
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.81.4078/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.81.4078/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/480168/LUAD-TP.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPicker/LUAD-TP/4397267/LUAD-TP.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"  "-oT="
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=456, in cluster file=229, common to both=172
[1] "Reduce the number of clustering variables from 209 to 200."
[1] 200 172
[1] "CDKN2A MUTATION ANALYSIS"
[1] 3
  CDKN2A MUTATED CDKN2A WILD-TYPE 
               8              164 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
               8              164 
[1] "KRAS MUTATION ANALYSIS"
[1] 3
  KRAS MUTATED KRAS WILD-TYPE 
            47            125 
  KRAS MUTATED KRAS WILD-TYPE 
            47            125 
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
            87             85 
  TP53 MUTATED TP53 WILD-TYPE 
            87             85 
[1] "EGFR MUTATION ANALYSIS"
[1] 3
  EGFR MUTATED EGFR WILD-TYPE 
            22            150 
  EGFR MUTATED EGFR WILD-TYPE 
            22            150 
[1] "KRTAP5-5 MUTATION ANALYSIS"
[1] 3
  KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE 
                21                151 
  KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE 
                21                151 
[1] "STK11 MUTATION ANALYSIS"
[1] 3
  STK11 MUTATED STK11 WILD-TYPE 
             20             152 
  STK11 MUTATED STK11 WILD-TYPE 
             20             152 
[1] "KEAP1 MUTATION ANALYSIS"
[1] 3
  KEAP1 MUTATED KEAP1 WILD-TYPE 
             32             140 
  KEAP1 MUTATED KEAP1 WILD-TYPE 
             32             140 
[1] "CRIPAK MUTATION ANALYSIS"
[1] 3
  CRIPAK MUTATED CRIPAK WILD-TYPE 
              12              160 
  CRIPAK MUTATED CRIPAK WILD-TYPE 
              12              160 
[1] "RBM10 MUTATION ANALYSIS"
[1] 3
  RBM10 MUTATED RBM10 WILD-TYPE 
             12             160 
  RBM10 MUTATED RBM10 WILD-TYPE 
             12             160 
[1] "NF1 MUTATION ANALYSIS"
[1] 3
  NF1 MUTATED NF1 WILD-TYPE 
           21           151 
  NF1 MUTATED NF1 WILD-TYPE 
           21           151 
[1] "GPR112 MUTATION ANALYSIS"
[1] 3
  GPR112 MUTATED GPR112 WILD-TYPE 
              35              137 
  GPR112 MUTATED GPR112 WILD-TYPE 
              35              137 
[1] "FLG MUTATION ANALYSIS"
[1] 3
  FLG MUTATED FLG WILD-TYPE 
           44           128 
  FLG MUTATED FLG WILD-TYPE 
           44           128 
[1] "SMARCA4 MUTATION ANALYSIS"
[1] 3
  SMARCA4 MUTATED SMARCA4 WILD-TYPE 
               14               158 
  SMARCA4 MUTATED SMARCA4 WILD-TYPE 
               14               158 
[1] "HRNR MUTATION ANALYSIS"
[1] 3
  HRNR MUTATED HRNR WILD-TYPE 
            25            147 
  HRNR MUTATED HRNR WILD-TYPE 
            25            147 
[1] "MUC7 MUTATION ANALYSIS"
[1] 3
  MUC7 MUTATED MUC7 WILD-TYPE 
            15            157 
  MUC7 MUTATED MUC7 WILD-TYPE 
            15            157 
[1] "COL11A1 MUTATION ANALYSIS"
[1] 3
  COL11A1 MUTATED COL11A1 WILD-TYPE 
               34               138 
  COL11A1 MUTATED COL11A1 WILD-TYPE 
               34               138 
[1] "BRAF MUTATION ANALYSIS"
[1] 3
  BRAF MUTATED BRAF WILD-TYPE 
            15            157 
  BRAF MUTATED BRAF WILD-TYPE 
            15            157 
[1] "U2AF1 MUTATION ANALYSIS"
[1] 3
  U2AF1 MUTATED U2AF1 WILD-TYPE 
              6             166 
  U2AF1 MUTATED U2AF1 WILD-TYPE 
              6             166 
[1] "PCK1 MUTATION ANALYSIS"
[1] 3
  PCK1 MUTATED PCK1 WILD-TYPE 
            10            162 
  PCK1 MUTATED PCK1 WILD-TYPE 
            10            162 
[1] "CSMD3 MUTATION ANALYSIS"
[1] 3
  CSMD3 MUTATED CSMD3 WILD-TYPE 
             78              94 
  CSMD3 MUTATED CSMD3 WILD-TYPE 
             78              94 
[1] "RIMS2 MUTATION ANALYSIS"
[1] 3
  RIMS2 MUTATED RIMS2 WILD-TYPE 
             32             140 
  RIMS2 MUTATED RIMS2 WILD-TYPE 
             32             140 
[1] "FTSJD1 MUTATION ANALYSIS"
[1] 3
  FTSJD1 MUTATED FTSJD1 WILD-TYPE 
               6              166 
  FTSJD1 MUTATED FTSJD1 WILD-TYPE 
               6              166 
[1] "RB1 MUTATION ANALYSIS"
[1] 3
  RB1 MUTATED RB1 WILD-TYPE 
            7           165 
  RB1 MUTATED RB1 WILD-TYPE 
            7           165 
[1] "LRP1B MUTATION ANALYSIS"
[1] 3
  LRP1B MUTATED LRP1B WILD-TYPE 
             61             111 
  LRP1B MUTATED LRP1B WILD-TYPE 
             61             111 
[1] "RIT1 MUTATION ANALYSIS"
[1] 3
  RIT1 MUTATED RIT1 WILD-TYPE 
             8            164 
  RIT1 MUTATED RIT1 WILD-TYPE 
             8            164 
[1] "OR10J3 MUTATION ANALYSIS"
[1] 3
  OR10J3 MUTATED OR10J3 WILD-TYPE 
               9              163 
  OR10J3 MUTATED OR10J3 WILD-TYPE 
               9              163 
[1] "LTBP1 MUTATION ANALYSIS"
[1] 3
  LTBP1 MUTATED LTBP1 WILD-TYPE 
             20             152 
  LTBP1 MUTATED LTBP1 WILD-TYPE 
             20             152 
[1] "SETD2 MUTATION ANALYSIS"
[1] 3
  SETD2 MUTATED SETD2 WILD-TYPE 
             15             157 
  SETD2 MUTATED SETD2 WILD-TYPE 
             15             157 
[1] "ZCCHC5 MUTATION ANALYSIS"
[1] 3
  ZCCHC5 MUTATED ZCCHC5 WILD-TYPE 
              10              162 
  ZCCHC5 MUTATED ZCCHC5 WILD-TYPE 
              10              162 
[1] "ADAMTS5 MUTATION ANALYSIS"
[1] 3
  ADAMTS5 MUTATED ADAMTS5 WILD-TYPE 
               14               158 
  ADAMTS5 MUTATED ADAMTS5 WILD-TYPE 
               14               158 
[1] "GBA3 MUTATION ANALYSIS"
[1] 3
  GBA3 MUTATED GBA3 WILD-TYPE 
             8            164 
  GBA3 MUTATED GBA3 WILD-TYPE 
             8            164 
[1] "MYL10 MUTATION ANALYSIS"
[1] 3
  MYL10 MUTATED MYL10 WILD-TYPE 
              5             167 
  MYL10 MUTATED MYL10 WILD-TYPE 
              5             167 
[1] "SMAD4 MUTATION ANALYSIS"
[1] 3
  SMAD4 MUTATED SMAD4 WILD-TYPE 
              7             165 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
              7             165 
[1] "ZNF268 MUTATION ANALYSIS"
[1] 3
  ZNF268 MUTATED ZNF268 WILD-TYPE 
               5              167 
  ZNF268 MUTATED ZNF268 WILD-TYPE 
               5              167 
[1] "OR4Q3 MUTATION ANALYSIS"
[1] 3
  OR4Q3 MUTATED OR4Q3 WILD-TYPE 
             11             161 
  OR4Q3 MUTATED OR4Q3 WILD-TYPE 
             11             161 
[1] "ARID1A MUTATION ANALYSIS"
[1] 3
  ARID1A MUTATED ARID1A WILD-TYPE 
              11              161 
  ARID1A MUTATED ARID1A WILD-TYPE 
              11              161 
[1] "CCDC73 MUTATION ANALYSIS"
[1] 3
  CCDC73 MUTATED CCDC73 WILD-TYPE 
              11              161 
  CCDC73 MUTATED CCDC73 WILD-TYPE 
              11              161 
[1] "MGA MUTATION ANALYSIS"
[1] 3
  MGA MUTATED MGA WILD-TYPE 
           16           156 
  MGA MUTATED MGA WILD-TYPE 
           16           156 
[1] "FAM48B1 MUTATION ANALYSIS"
[1] 3
  FAM48B1 MUTATED FAM48B1 WILD-TYPE 
               10               162 
  FAM48B1 MUTATED FAM48B1 WILD-TYPE 
               10               162 
[1] "IFNA7 MUTATION ANALYSIS"
[1] 3
  IFNA7 MUTATED IFNA7 WILD-TYPE 
              5             167 
  IFNA7 MUTATED IFNA7 WILD-TYPE 
              5             167 
[1] "FANCD2 MUTATION ANALYSIS"
[1] 3
  FANCD2 MUTATED FANCD2 WILD-TYPE 
               7              165 
  FANCD2 MUTATED FANCD2 WILD-TYPE 
               7              165 
[1] "MBD1 MUTATION ANALYSIS"
[1] 3
  MBD1 MUTATED MBD1 WILD-TYPE 
             6            166 
  MBD1 MUTATED MBD1 WILD-TYPE 
             6            166 
[1] "ASTN2 MUTATION ANALYSIS"
[1] 3
  ASTN2 MUTATED ASTN2 WILD-TYPE 
             15             157 
  ASTN2 MUTATED ASTN2 WILD-TYPE 
             15             157 
[1] "MLL3 MUTATION ANALYSIS"
[1] 3
  MLL3 MUTATED MLL3 WILD-TYPE 
            34            138 
  MLL3 MUTATED MLL3 WILD-TYPE 
            34            138 
[1] "FLI1 MUTATION ANALYSIS"
[1] 3
  FLI1 MUTATED FLI1 WILD-TYPE 
             6            166 
  FLI1 MUTATED FLI1 WILD-TYPE 
             6            166 
[1] "LAX1 MUTATION ANALYSIS"
[1] 3
  LAX1 MUTATED LAX1 WILD-TYPE 
             6            166 
  LAX1 MUTATED LAX1 WILD-TYPE 
             6            166 
[1] "SVOP MUTATION ANALYSIS"
[1] 3
  SVOP MUTATED SVOP WILD-TYPE 
             7            165 
  SVOP MUTATED SVOP WILD-TYPE 
             7            165 
[1] "MTTP MUTATION ANALYSIS"
[1] 3
  MTTP MUTATED MTTP WILD-TYPE 
             6            166 
  MTTP MUTATED MTTP WILD-TYPE 
             6            166 
[1] "COL19A1 MUTATION ANALYSIS"
[1] 3
  COL19A1 MUTATED COL19A1 WILD-TYPE 
               14               158 
  COL19A1 MUTATED COL19A1 WILD-TYPE 
               14               158 
[1] "LRRC32 MUTATION ANALYSIS"
[1] 3
  LRRC32 MUTATED LRRC32 WILD-TYPE 
              11              161 
  LRRC32 MUTATED LRRC32 WILD-TYPE 
              11              161 
[1] "TEX15 MUTATION ANALYSIS"
[1] 3
  TEX15 MUTATED TEX15 WILD-TYPE 
             24             148 
  TEX15 MUTATED TEX15 WILD-TYPE 
             24             148 
[1] "OR10G9 MUTATION ANALYSIS"
[1] 3
  OR10G9 MUTATED OR10G9 WILD-TYPE 
              10              162 
  OR10G9 MUTATED OR10G9 WILD-TYPE 
              10              162 
[1] "CNGA2 MUTATION ANALYSIS"
[1] 3
  CNGA2 MUTATED CNGA2 WILD-TYPE 
             11             161 
  CNGA2 MUTATED CNGA2 WILD-TYPE 
             11             161 
[1] "FGB MUTATION ANALYSIS"
[1] 3
  FGB MUTATED FGB WILD-TYPE 
           11           161 
  FGB MUTATED FGB WILD-TYPE 
           11           161 
[1] "ANP32C MUTATION ANALYSIS"
[1] 3
  ANP32C MUTATED ANP32C WILD-TYPE 
               8              164 
  ANP32C MUTATED ANP32C WILD-TYPE 
               8              164 
[1] "KIAA1755 MUTATION ANALYSIS"
[1] 3
  KIAA1755 MUTATED KIAA1755 WILD-TYPE 
                12                160 
  KIAA1755 MUTATED KIAA1755 WILD-TYPE 
                12                160 
[1] "OVCH1 MUTATION ANALYSIS"
[1] 3
  OVCH1 MUTATED OVCH1 WILD-TYPE 
             14             158 
  OVCH1 MUTATED OVCH1 WILD-TYPE 
             14             158 
[1] "PJA1 MUTATION ANALYSIS"
[1] 3
  PJA1 MUTATED PJA1 WILD-TYPE 
             8            164 
  PJA1 MUTATED PJA1 WILD-TYPE 
             8            164 
[1] "SUN1 MUTATION ANALYSIS"
[1] 3
  SUN1 MUTATED SUN1 WILD-TYPE 
             8            164 
  SUN1 MUTATED SUN1 WILD-TYPE 
             8            164 
[1] "RUFY2 MUTATION ANALYSIS"
[1] 3
  RUFY2 MUTATED RUFY2 WILD-TYPE 
              7             165 
  RUFY2 MUTATED RUFY2 WILD-TYPE 
              7             165 
[1] "PABPC3 MUTATION ANALYSIS"
[1] 3
  PABPC3 MUTATED PABPC3 WILD-TYPE 
               9              163 
  PABPC3 MUTATED PABPC3 WILD-TYPE 
               9              163 
[1] "STXBP5L MUTATION ANALYSIS"
[1] 3
  STXBP5L MUTATED STXBP5L WILD-TYPE 
               12               160 
  STXBP5L MUTATED STXBP5L WILD-TYPE 
               12               160 
[1] "ELTD1 MUTATION ANALYSIS"
[1] 3
  ELTD1 MUTATED ELTD1 WILD-TYPE 
             15             157 
  ELTD1 MUTATED ELTD1 WILD-TYPE 
             15             157 
[1] "KRT28 MUTATION ANALYSIS"
[1] 3
  KRT28 MUTATED KRT28 WILD-TYPE 
              7             165 
  KRT28 MUTATED KRT28 WILD-TYPE 
              7             165 
[1] "EPHA6 MUTATION ANALYSIS"
[1] 3
  EPHA6 MUTATED EPHA6 WILD-TYPE 
             22             150 
  EPHA6 MUTATED EPHA6 WILD-TYPE 
             22             150 
[1] "OR10R2 MUTATION ANALYSIS"
[1] 3
  OR10R2 MUTATED OR10R2 WILD-TYPE 
              10              162 
  OR10R2 MUTATED OR10R2 WILD-TYPE 
              10              162 
[1] "TLR4 MUTATION ANALYSIS"
[1] 3
  TLR4 MUTATED TLR4 WILD-TYPE 
            23            149 
  TLR4 MUTATED TLR4 WILD-TYPE 
            23            149 
[1] "OR6F1 MUTATION ANALYSIS"
[1] 3
  OR6F1 MUTATED OR6F1 WILD-TYPE 
             10             162 
  OR6F1 MUTATED OR6F1 WILD-TYPE 
             10             162 
[1] "THEMIS MUTATION ANALYSIS"
[1] 3
  THEMIS MUTATED THEMIS WILD-TYPE 
              10              162 
  THEMIS MUTATED THEMIS WILD-TYPE 
              10              162 
[1] "DACT1 MUTATION ANALYSIS"
[1] 3
  DACT1 MUTATED DACT1 WILD-TYPE 
             10             162 
  DACT1 MUTATED DACT1 WILD-TYPE 
             10             162 
[1] "APC MUTATION ANALYSIS"
[1] 3
  APC MUTATED APC WILD-TYPE 
           10           162 
  APC MUTATED APC WILD-TYPE 
           10           162 
[1] "SCG2 MUTATION ANALYSIS"
[1] 3
  SCG2 MUTATED SCG2 WILD-TYPE 
             8            164 
  SCG2 MUTATED SCG2 WILD-TYPE 
             8            164 
[1] "BRE MUTATION ANALYSIS"
[1] 3
  BRE MUTATED BRE WILD-TYPE 
            4           168 
  BRE MUTATED BRE WILD-TYPE 
            4           168 
[1] "SERPINB13 MUTATION ANALYSIS"
[1] 3
  SERPINB13 MUTATED SERPINB13 WILD-TYPE 
                  9                 163 
  SERPINB13 MUTATED SERPINB13 WILD-TYPE 
                  9                 163 
[1] "GATA3 MUTATION ANALYSIS"
[1] 3
  GATA3 MUTATED GATA3 WILD-TYPE 
              6             166 
  GATA3 MUTATED GATA3 WILD-TYPE 
              6             166 
[1] "GNG2 MUTATION ANALYSIS"
[1] 3
  GNG2 MUTATED GNG2 WILD-TYPE 
             4            168 
  GNG2 MUTATED GNG2 WILD-TYPE 
             4            168 
[1] "TSHZ3 MUTATION ANALYSIS"
[1] 3
  TSHZ3 MUTATED TSHZ3 WILD-TYPE 
             25             147 
  TSHZ3 MUTATED TSHZ3 WILD-TYPE 
             25             147 
[1] "GPR158 MUTATION ANALYSIS"
[1] 3
  GPR158 MUTATED GPR158 WILD-TYPE 
              18              154 
  GPR158 MUTATED GPR158 WILD-TYPE 
              18              154 
[1] "SPTA1 MUTATION ANALYSIS"
[1] 3
  SPTA1 MUTATED SPTA1 WILD-TYPE 
             51             121 
  SPTA1 MUTATED SPTA1 WILD-TYPE 
             51             121 
[1] "PDGFA MUTATION ANALYSIS"
[1] 3
  PDGFA MUTATED PDGFA WILD-TYPE 
              5             167 
  PDGFA MUTATED PDGFA WILD-TYPE 
              5             167 
[1] "F8 MUTATION ANALYSIS"
[1] 3
  F8 MUTATED F8 WILD-TYPE 
          15          157 
  F8 MUTATED F8 WILD-TYPE 
          15          157 
[1] "CTRC MUTATION ANALYSIS"
[1] 3
  CTRC MUTATED CTRC WILD-TYPE 
             4            168 
  CTRC MUTATED CTRC WILD-TYPE 
             4            168 
[1] "EPHB6 MUTATION ANALYSIS"
[1] 3
  EPHB6 MUTATED EPHB6 WILD-TYPE 
             19             153 
  EPHB6 MUTATED EPHB6 WILD-TYPE 
             19             153 
[1] "C12ORF74 MUTATION ANALYSIS"
[1] 3
  C12ORF74 MUTATED C12ORF74 WILD-TYPE 
                 3                169 
  C12ORF74 MUTATED C12ORF74 WILD-TYPE 
                 3                169 
[1] "DENND2A MUTATION ANALYSIS"
[1] 3
  DENND2A MUTATED DENND2A WILD-TYPE 
                9               163 
  DENND2A MUTATED DENND2A WILD-TYPE 
                9               163 
[1] "POF1B MUTATION ANALYSIS"
[1] 3
  POF1B MUTATED POF1B WILD-TYPE 
              9             163 
  POF1B MUTATED POF1B WILD-TYPE 
              9             163 
[1] "TMTC1 MUTATION ANALYSIS"
[1] 3
  TMTC1 MUTATED TMTC1 WILD-TYPE 
             22             150 
  TMTC1 MUTATED TMTC1 WILD-TYPE 
             22             150 
[1] "OR2F2 MUTATION ANALYSIS"
[1] 3
  OR2F2 MUTATED OR2F2 WILD-TYPE 
              6             166 
  OR2F2 MUTATED OR2F2 WILD-TYPE 
              6             166 
[1] "SPATA18 MUTATION ANALYSIS"
[1] 3
  SPATA18 MUTATED SPATA18 WILD-TYPE 
                8               164 
  SPATA18 MUTATED SPATA18 WILD-TYPE 
                8               164 
[1] "FSCB MUTATION ANALYSIS"
[1] 3
  FSCB MUTATED FSCB WILD-TYPE 
            15            157 
  FSCB MUTATED FSCB WILD-TYPE 
            15            157 
[1] "TBX21 MUTATION ANALYSIS"
[1] 3
  TBX21 MUTATED TBX21 WILD-TYPE 
              7             165 
  TBX21 MUTATED TBX21 WILD-TYPE 
              7             165 
[1] "CDH6 MUTATION ANALYSIS"
[1] 3
  CDH6 MUTATED CDH6 WILD-TYPE 
            17            155 
  CDH6 MUTATED CDH6 WILD-TYPE 
            17            155 
[1] "TTC18 MUTATION ANALYSIS"
[1] 3
  TTC18 MUTATED TTC18 WILD-TYPE 
              5             167 
  TTC18 MUTATED TTC18 WILD-TYPE 
              5             167 
[1] "NALCN MUTATION ANALYSIS"
[1] 3
  NALCN MUTATED NALCN WILD-TYPE 
             24             148 
  NALCN MUTATED NALCN WILD-TYPE 
             24             148 
[1] "ABCB5 MUTATION ANALYSIS"
[1] 3
  ABCB5 MUTATED ABCB5 WILD-TYPE 
             19             153 
  ABCB5 MUTATED ABCB5 WILD-TYPE 
             19             153 
[1] "OR5I1 MUTATION ANALYSIS"
[1] 3
  OR5I1 MUTATED OR5I1 WILD-TYPE 
             11             161 
  OR5I1 MUTATED OR5I1 WILD-TYPE 
             11             161 
[1] "COL5A1 MUTATION ANALYSIS"
[1] 3
  COL5A1 MUTATED COL5A1 WILD-TYPE 
              13              159 
  COL5A1 MUTATED COL5A1 WILD-TYPE 
              13              159 
[1] "ITGAX MUTATION ANALYSIS"
[1] 3
  ITGAX MUTATED ITGAX WILD-TYPE 
             17             155 
  ITGAX MUTATED ITGAX WILD-TYPE 
             17             155 
[1] "FBXL7 MUTATION ANALYSIS"
[1] 3
  FBXL7 MUTATED FBXL7 WILD-TYPE 
             17             155 
  FBXL7 MUTATED FBXL7 WILD-TYPE 
             17             155 
[1] "SVEP1 MUTATION ANALYSIS"
[1] 3
  SVEP1 MUTATED SVEP1 WILD-TYPE 
             21             151 
  SVEP1 MUTATED SVEP1 WILD-TYPE 
             21             151 
[1] "DEFB112 MUTATION ANALYSIS"
[1] 3
  DEFB112 MUTATED DEFB112 WILD-TYPE 
                4               168 
  DEFB112 MUTATED DEFB112 WILD-TYPE 
                4               168 
[1] "ARID2 MUTATION ANALYSIS"
[1] 3
  ARID2 MUTATED ARID2 WILD-TYPE 
             12             160 
  ARID2 MUTATED ARID2 WILD-TYPE 
             12             160 
[1] "ANKRD44 MUTATION ANALYSIS"
[1] 3
  ANKRD44 MUTATED ANKRD44 WILD-TYPE 
                9               163 
  ANKRD44 MUTATED ANKRD44 WILD-TYPE 
                9               163 
[1] "OR4C16 MUTATION ANALYSIS"
[1] 3
  OR4C16 MUTATED OR4C16 WILD-TYPE 
              14              158 
  OR4C16 MUTATED OR4C16 WILD-TYPE 
              14              158 
[1] "EPS8L3 MUTATION ANALYSIS"
[1] 3
  EPS8L3 MUTATED EPS8L3 WILD-TYPE 
               4              168 
  EPS8L3 MUTATED EPS8L3 WILD-TYPE 
               4              168 
[1] "TARS2 MUTATION ANALYSIS"
[1] 3
  TARS2 MUTATED TARS2 WILD-TYPE 
              8             164 
  TARS2 MUTATED TARS2 WILD-TYPE 
              8             164 
[1] "SPEG MUTATION ANALYSIS"
[1] 3
  SPEG MUTATED SPEG WILD-TYPE 
            16            156 
  SPEG MUTATED SPEG WILD-TYPE 
            16            156 
[1] "GPR174 MUTATION ANALYSIS"
[1] 3
  GPR174 MUTATED GPR174 WILD-TYPE 
               6              166 
  GPR174 MUTATED GPR174 WILD-TYPE 
               6              166 
[1] "KIF9 MUTATION ANALYSIS"
[1] 3
  KIF9 MUTATED KIF9 WILD-TYPE 
             7            165 
  KIF9 MUTATED KIF9 WILD-TYPE 
             7            165 
[1] "OR2T27 MUTATION ANALYSIS"
[1] 3
  OR2T27 MUTATED OR2T27 WILD-TYPE 
               8              164 
  OR2T27 MUTATED OR2T27 WILD-TYPE 
               8              164 
[1] "CYP1A1 MUTATION ANALYSIS"
[1] 3
  CYP1A1 MUTATED CYP1A1 WILD-TYPE 
               4              168 
  CYP1A1 MUTATED CYP1A1 WILD-TYPE 
               4              168 
[1] "C1ORF173 MUTATION ANALYSIS"
[1] 3
  C1ORF173 MUTATED C1ORF173 WILD-TYPE 
                25                147 
  C1ORF173 MUTATED C1ORF173 WILD-TYPE 
                25                147 
[1] "SH2D2A MUTATION ANALYSIS"
[1] 3
  SH2D2A MUTATED SH2D2A WILD-TYPE 
               6              166 
  SH2D2A MUTATED SH2D2A WILD-TYPE 
               6              166 
[1] "CD5L MUTATION ANALYSIS"
[1] 3
  CD5L MUTATED CD5L WILD-TYPE 
            12            160 
  CD5L MUTATED CD5L WILD-TYPE 
            12            160 
[1] "ANKRD56 MUTATION ANALYSIS"
[1] 3
  ANKRD56 MUTATED ANKRD56 WILD-TYPE 
               11               161 
  ANKRD56 MUTATED ANKRD56 WILD-TYPE 
               11               161 
[1] "HOXA5 MUTATION ANALYSIS"
[1] 3
  HOXA5 MUTATED HOXA5 WILD-TYPE 
              6             166 
  HOXA5 MUTATED HOXA5 WILD-TYPE 
              6             166 
[1] "FERD3L MUTATION ANALYSIS"
[1] 3
  FERD3L MUTATED FERD3L WILD-TYPE 
               7              165 
  FERD3L MUTATED FERD3L WILD-TYPE 
               7              165 
[1] "PLA2G4E MUTATION ANALYSIS"
[1] 3
  PLA2G4E MUTATED PLA2G4E WILD-TYPE 
                4               168 
  PLA2G4E MUTATED PLA2G4E WILD-TYPE 
                4               168 
[1] "RP1L1 MUTATION ANALYSIS"
[1] 3
  RP1L1 MUTATED RP1L1 WILD-TYPE 
             32             140 
  RP1L1 MUTATED RP1L1 WILD-TYPE 
             32             140 
[1] "SIRPB1 MUTATION ANALYSIS"
[1] 3
  SIRPB1 MUTATED SIRPB1 WILD-TYPE 
               6              166 
  SIRPB1 MUTATED SIRPB1 WILD-TYPE 
               6              166 
[1] "GTF2I MUTATION ANALYSIS"
[1] 3
  GTF2I MUTATED GTF2I WILD-TYPE 
              3             169 
  GTF2I MUTATED GTF2I WILD-TYPE 
              3             169 
[1] "COL3A1 MUTATION ANALYSIS"
[1] 3
  COL3A1 MUTATED COL3A1 WILD-TYPE 
              22              150 
  COL3A1 MUTATED COL3A1 WILD-TYPE 
              22              150 
[1] "MUC16 MUTATION ANALYSIS"
[1] 3
  MUC16 MUTATED MUC16 WILD-TYPE 
             79              93 
  MUC16 MUTATED MUC16 WILD-TYPE 
             79              93 
[1] "VPS13C MUTATION ANALYSIS"
[1] 3
  VPS13C MUTATED VPS13C WILD-TYPE 
              19              153 
  VPS13C MUTATED VPS13C WILD-TYPE 
              19              153 
[1] "HOXA3 MUTATION ANALYSIS"
[1] 3
  HOXA3 MUTATED HOXA3 WILD-TYPE 
              6             166 
  HOXA3 MUTATED HOXA3 WILD-TYPE 
              6             166 
[1] "TBX15 MUTATION ANALYSIS"
[1] 3
  TBX15 MUTATED TBX15 WILD-TYPE 
             11             161 
  TBX15 MUTATED TBX15 WILD-TYPE 
             11             161 
[1] "OR56A4 MUTATION ANALYSIS"
[1] 3
  OR56A4 MUTATED OR56A4 WILD-TYPE 
               6              166 
  OR56A4 MUTATED OR56A4 WILD-TYPE 
               6              166 
[1] "HCK MUTATION ANALYSIS"
[1] 3
  HCK MUTATED HCK WILD-TYPE 
            6           166 
  HCK MUTATED HCK WILD-TYPE 
            6           166 
[1] "KDR MUTATION ANALYSIS"
[1] 3
  KDR MUTATED KDR WILD-TYPE 
           20           152 
  KDR MUTATED KDR WILD-TYPE 
           20           152 
[1] "BRS3 MUTATION ANALYSIS"
[1] 3
  BRS3 MUTATED BRS3 WILD-TYPE 
             7            165 
  BRS3 MUTATED BRS3 WILD-TYPE 
             7            165 
[1] "LPPR4 MUTATION ANALYSIS"
[1] 3
  LPPR4 MUTATED LPPR4 WILD-TYPE 
             14             158 
  LPPR4 MUTATED LPPR4 WILD-TYPE 
             14             158 
[1] "KDM5C MUTATION ANALYSIS"
[1] 3
  KDM5C MUTATED KDM5C WILD-TYPE 
              8             164 
  KDM5C MUTATED KDM5C WILD-TYPE 
              8             164 
[1] "TRPC1 MUTATION ANALYSIS"
[1] 3
  TRPC1 MUTATED TRPC1 WILD-TYPE 
              7             165 
  TRPC1 MUTATED TRPC1 WILD-TYPE 
              7             165 
[1] "HAX1 MUTATION ANALYSIS"
[1] 3
  HAX1 MUTATED HAX1 WILD-TYPE 
             4            168 
  HAX1 MUTATED HAX1 WILD-TYPE 
             4            168 
[1] "ZNF260 MUTATION ANALYSIS"
[1] 3
  ZNF260 MUTATED ZNF260 WILD-TYPE 
               4              168 
  ZNF260 MUTATED ZNF260 WILD-TYPE 
               4              168 
[1] "OLAH MUTATION ANALYSIS"
[1] 3
  OLAH MUTATED OLAH WILD-TYPE 
             7            165 
  OLAH MUTATED OLAH WILD-TYPE 
             7            165 
[1] "C9ORF64 MUTATION ANALYSIS"
[1] 3
  C9ORF64 MUTATED C9ORF64 WILD-TYPE 
                3               169 
  C9ORF64 MUTATED C9ORF64 WILD-TYPE 
                3               169 
[1] "ATM MUTATION ANALYSIS"
[1] 3
  ATM MUTATED ATM WILD-TYPE 
           15           157 
  ATM MUTATED ATM WILD-TYPE 
           15           157 
[1] "POLR3B MUTATION ANALYSIS"
[1] 3
  POLR3B MUTATED POLR3B WILD-TYPE 
              11              161 
  POLR3B MUTATED POLR3B WILD-TYPE 
              11              161 
[1] "C1ORF49 MUTATION ANALYSIS"
[1] 3
  C1ORF49 MUTATED C1ORF49 WILD-TYPE 
                6               166 
  C1ORF49 MUTATED C1ORF49 WILD-TYPE 
                6               166 
[1] "MFSD8 MUTATION ANALYSIS"
[1] 3
  MFSD8 MUTATED MFSD8 WILD-TYPE 
              5             167 
  MFSD8 MUTATED MFSD8 WILD-TYPE 
              5             167 
[1] "OR4A15 MUTATION ANALYSIS"
[1] 3
  OR4A15 MUTATED OR4A15 WILD-TYPE 
              14              158 
  OR4A15 MUTATED OR4A15 WILD-TYPE 
              14              158 
[1] "LELP1 MUTATION ANALYSIS"
[1] 3
  LELP1 MUTATED LELP1 WILD-TYPE 
              3             169 
  LELP1 MUTATED LELP1 WILD-TYPE 
              3             169 
[1] "AOAH MUTATION ANALYSIS"
[1] 3
  AOAH MUTATED AOAH WILD-TYPE 
             8            164 
  AOAH MUTATED AOAH WILD-TYPE 
             8            164 
[1] "GRK5 MUTATION ANALYSIS"
[1] 3
  GRK5 MUTATED GRK5 WILD-TYPE 
             7            165 
  GRK5 MUTATED GRK5 WILD-TYPE 
             7            165 
[1] "FCRL4 MUTATION ANALYSIS"
[1] 3
  FCRL4 MUTATED FCRL4 WILD-TYPE 
              7             165 
  FCRL4 MUTATED FCRL4 WILD-TYPE 
              7             165 
[1] "NT5DC3 MUTATION ANALYSIS"
[1] 3
  NT5DC3 MUTATED NT5DC3 WILD-TYPE 
               5              167 
  NT5DC3 MUTATED NT5DC3 WILD-TYPE 
               5              167 
[1] "NAALAD2 MUTATION ANALYSIS"
[1] 3
  NAALAD2 MUTATED NAALAD2 WILD-TYPE 
                9               163 
  NAALAD2 MUTATED NAALAD2 WILD-TYPE 
                9               163 
[1] "C8ORF37 MUTATION ANALYSIS"
[1] 3
  C8ORF37 MUTATED C8ORF37 WILD-TYPE 
                6               166 
  C8ORF37 MUTATED C8ORF37 WILD-TYPE 
                6               166 
[1] "XIRP2 MUTATION ANALYSIS"
[1] 3
  XIRP2 MUTATED XIRP2 WILD-TYPE 
             47             125 
  XIRP2 MUTATED XIRP2 WILD-TYPE 
             47             125 
[1] "PTH MUTATION ANALYSIS"
[1] 3
  PTH MUTATED PTH WILD-TYPE 
            3           169 
  PTH MUTATED PTH WILD-TYPE 
            3           169 
[1] "STAC3 MUTATION ANALYSIS"
[1] 3
  STAC3 MUTATED STAC3 WILD-TYPE 
              3             169 
  STAC3 MUTATED STAC3 WILD-TYPE 
              3             169 
[1] "IL18RAP MUTATION ANALYSIS"
[1] 3
  IL18RAP MUTATED IL18RAP WILD-TYPE 
                5               167 
  IL18RAP MUTATED IL18RAP WILD-TYPE 
                5               167 
[1] "TAAR5 MUTATION ANALYSIS"
[1] 3
  TAAR5 MUTATED TAAR5 WILD-TYPE 
              7             165 
  TAAR5 MUTATED TAAR5 WILD-TYPE 
              7             165 
[1] "C2ORF39 MUTATION ANALYSIS"
[1] 3
  C2ORF39 MUTATED C2ORF39 WILD-TYPE 
                8               164 
  C2ORF39 MUTATED C2ORF39 WILD-TYPE 
                8               164 
[1] "OR13G1 MUTATION ANALYSIS"
[1] 3
  OR13G1 MUTATED OR13G1 WILD-TYPE 
               9              163 
  OR13G1 MUTATED OR13G1 WILD-TYPE 
               9              163 
[1] "OR2G2 MUTATION ANALYSIS"
[1] 3
  OR2G2 MUTATED OR2G2 WILD-TYPE 
             12             160 
  OR2G2 MUTATED OR2G2 WILD-TYPE 
             12             160 
[1] "ADAMTS2 MUTATION ANALYSIS"
[1] 3
  ADAMTS2 MUTATED ADAMTS2 WILD-TYPE 
               14               158 
  ADAMTS2 MUTATED ADAMTS2 WILD-TYPE 
               14               158 
[1] "FBN2 MUTATION ANALYSIS"
[1] 3
  FBN2 MUTATED FBN2 WILD-TYPE 
            29            143 
  FBN2 MUTATED FBN2 WILD-TYPE 
            29            143 
[1] "BTK MUTATION ANALYSIS"
[1] 3
  BTK MUTATED BTK WILD-TYPE 
            7           165 
  BTK MUTATED BTK WILD-TYPE 
            7           165 
[1] "REG1B MUTATION ANALYSIS"
[1] 3
  REG1B MUTATED REG1B WILD-TYPE 
             13             159 
  REG1B MUTATED REG1B WILD-TYPE 
             13             159 
[1] "COL5A2 MUTATION ANALYSIS"
[1] 3
  COL5A2 MUTATED COL5A2 WILD-TYPE 
              18              154 
  COL5A2 MUTATED COL5A2 WILD-TYPE 
              18              154 
[1] "NHEDC1 MUTATION ANALYSIS"
[1] 3
  NHEDC1 MUTATED NHEDC1 WILD-TYPE 
               9              163 
  NHEDC1 MUTATED NHEDC1 WILD-TYPE 
               9              163 
[1] "IL1RAPL1 MUTATION ANALYSIS"
[1] 3
  IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE 
                11                161 
  IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE 
                11                161 
[1] "DGKB MUTATION ANALYSIS"
[1] 3
  DGKB MUTATED DGKB WILD-TYPE 
            11            161 
  DGKB MUTATED DGKB WILD-TYPE 
            11            161 
[1] "COL25A1 MUTATION ANALYSIS"
[1] 3
  COL25A1 MUTATED COL25A1 WILD-TYPE 
               11               161 
  COL25A1 MUTATED COL25A1 WILD-TYPE 
               11               161 
[1] "SEMA5A MUTATION ANALYSIS"
[1] 3
  SEMA5A MUTATED SEMA5A WILD-TYPE 
              15              157 
  SEMA5A MUTATED SEMA5A WILD-TYPE 
              15              157 
[1] "BHMT MUTATION ANALYSIS"
[1] 3
  BHMT MUTATED BHMT WILD-TYPE 
             5            167 
  BHMT MUTATED BHMT WILD-TYPE 
             5            167 
[1] "CXCL6 MUTATION ANALYSIS"
[1] 3
  CXCL6 MUTATED CXCL6 WILD-TYPE 
              4             168 
  CXCL6 MUTATED CXCL6 WILD-TYPE 
              4             168 
[1] "CLEC12B MUTATION ANALYSIS"
[1] 3
  CLEC12B MUTATED CLEC12B WILD-TYPE 
                3               169 
  CLEC12B MUTATED CLEC12B WILD-TYPE 
                3               169 
[1] "DYDC2 MUTATION ANALYSIS"
[1] 3
  DYDC2 MUTATED DYDC2 WILD-TYPE 
              3             169 
  DYDC2 MUTATED DYDC2 WILD-TYPE 
              3             169 
[1] "AKR1B10 MUTATION ANALYSIS"
[1] 3
  AKR1B10 MUTATED AKR1B10 WILD-TYPE 
                4               168 
  AKR1B10 MUTATED AKR1B10 WILD-TYPE 
                4               168 
[1] "CMA1 MUTATION ANALYSIS"
[1] 3
  CMA1 MUTATED CMA1 WILD-TYPE 
             4            168 
  CMA1 MUTATED CMA1 WILD-TYPE 
             4            168 
[1] "KRTAP1-5 MUTATION ANALYSIS"
[1] 3
  KRTAP1-5 MUTATED KRTAP1-5 WILD-TYPE 
                 7                165 
  KRTAP1-5 MUTATED KRTAP1-5 WILD-TYPE 
                 7                165 
[1] "STX2 MUTATION ANALYSIS"
[1] 3
  STX2 MUTATED STX2 WILD-TYPE 
             4            168 
  STX2 MUTATED STX2 WILD-TYPE 
             4            168 
[1] "AQP10 MUTATION ANALYSIS"
[1] 3
  AQP10 MUTATED AQP10 WILD-TYPE 
              6             166 
  AQP10 MUTATED AQP10 WILD-TYPE 
              6             166 
[1] "P2RX7 MUTATION ANALYSIS"
[1] 3
  P2RX7 MUTATED P2RX7 WILD-TYPE 
              4             168 
  P2RX7 MUTATED P2RX7 WILD-TYPE 
              4             168 
[1] "NETO1 MUTATION ANALYSIS"
[1] 3
  NETO1 MUTATED NETO1 WILD-TYPE 
             14             158 
  NETO1 MUTATED NETO1 WILD-TYPE 
             14             158 
[1] "MGAT4C MUTATION ANALYSIS"
[1] 3
  MGAT4C MUTATED MGAT4C WILD-TYPE 
               7              165 
  MGAT4C MUTATED MGAT4C WILD-TYPE 
               7              165 
[1] "SLC34A2 MUTATION ANALYSIS"
[1] 3
  SLC34A2 MUTATED SLC34A2 WILD-TYPE 
                8               164 
  SLC34A2 MUTATED SLC34A2 WILD-TYPE 
                8               164 
[1] "NTRK1 MUTATION ANALYSIS"
[1] 3
  NTRK1 MUTATED NTRK1 WILD-TYPE 
              7             165 
  NTRK1 MUTATED NTRK1 WILD-TYPE 
              7             165 
[1] "VEGFC MUTATION ANALYSIS"
[1] 3
  VEGFC MUTATED VEGFC WILD-TYPE 
              9             163 
  VEGFC MUTATED VEGFC WILD-TYPE 
              9             163 
[1] "GC MUTATION ANALYSIS"
[1] 3
  GC MUTATED GC WILD-TYPE 
           5          167 
  GC MUTATED GC WILD-TYPE 
           5          167 
[1] "CTCFL MUTATION ANALYSIS"
[1] 3
  CTCFL MUTATED CTCFL WILD-TYPE 
             11             161 
  CTCFL MUTATED CTCFL WILD-TYPE 
             11             161 
[1] "DYTN MUTATION ANALYSIS"
[1] 3
  DYTN MUTATED DYTN WILD-TYPE 
            10            162 
  DYTN MUTATED DYTN WILD-TYPE 
            10            162 
[1] "EHHADH MUTATION ANALYSIS"
[1] 3
  EHHADH MUTATED EHHADH WILD-TYPE 
               4              168 
  EHHADH MUTATED EHHADH WILD-TYPE 
               4              168 
[1] "COL4A2 MUTATION ANALYSIS"
[1] 3
  COL4A2 MUTATED COL4A2 WILD-TYPE 
              11              161 
  COL4A2 MUTATED COL4A2 WILD-TYPE 
              11              161 
[1] "ABCG5 MUTATION ANALYSIS"
[1] 3
  ABCG5 MUTATED ABCG5 WILD-TYPE 
              9             163 
  ABCG5 MUTATED ABCG5 WILD-TYPE 
              9             163 
[1] "OR10G2 MUTATION ANALYSIS"
[1] 3
  OR10G2 MUTATED OR10G2 WILD-TYPE 
               5              167 
  OR10G2 MUTATED OR10G2 WILD-TYPE 
               5              167 
[1] "CYP4V2 MUTATION ANALYSIS"
[1] 3
  CYP4V2 MUTATED CYP4V2 WILD-TYPE 
               6              166 
  CYP4V2 MUTATED CYP4V2 WILD-TYPE 
               6              166 
[1] "EIF2C1 MUTATION ANALYSIS"
[1] 3
  EIF2C1 MUTATED EIF2C1 WILD-TYPE 
               4              168 
  EIF2C1 MUTATED EIF2C1 WILD-TYPE 
               4              168 
[1] "CCDC39 MUTATION ANALYSIS"
[1] 3
  CCDC39 MUTATED CCDC39 WILD-TYPE 
               7              165 
  CCDC39 MUTATED CCDC39 WILD-TYPE 
               7              165 
[1] "FAM5C MUTATION ANALYSIS"
[1] 3
  FAM5C MUTATED FAM5C WILD-TYPE 
             28             144 
  FAM5C MUTATED FAM5C WILD-TYPE 
             28             144 
[1] "TKTL1 MUTATION ANALYSIS"
[1] 3
  TKTL1 MUTATED TKTL1 WILD-TYPE 
              5             167 
  TKTL1 MUTATED TKTL1 WILD-TYPE 
              5             167 
[1] "SLC22A6 MUTATION ANALYSIS"
[1] 3
  SLC22A6 MUTATED SLC22A6 WILD-TYPE 
                8               164 
  SLC22A6 MUTATED SLC22A6 WILD-TYPE 
                8               164 
[1] "PPP3CA MUTATION ANALYSIS"
[1] 3
  PPP3CA MUTATED PPP3CA WILD-TYPE 
               3              169 
  PPP3CA MUTATED PPP3CA WILD-TYPE 
               3              169 
[1] "C20ORF132 MUTATION ANALYSIS"
[1] 3
  C20ORF132 MUTATED C20ORF132 WILD-TYPE 
                  8                 164 
  C20ORF132 MUTATED C20ORF132 WILD-TYPE 
                  8                 164 
[1] "EIF4G3 MUTATION ANALYSIS"
[1] 3
  EIF4G3 MUTATED EIF4G3 WILD-TYPE 
               6              166 
  EIF4G3 MUTATED EIF4G3 WILD-TYPE 
               6              166 
[1] "PLCB1 MUTATION ANALYSIS"
[1] 3
  PLCB1 MUTATED PLCB1 WILD-TYPE 
             12             160 
  PLCB1 MUTATED PLCB1 WILD-TYPE 
             12             160 
[1] "KRTAP19-6 MUTATION ANALYSIS"
[1] 3
  KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE 
                  4                 168 
  KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE 
                  4                 168 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "VITALSTATUS"                           
 [3] "DAYSTODEATH"                           
 [4] "DAYSTOLASTFOLLOWUP"                    
 [5] "PRIMARYSITEOFDESEASE"                  
 [6] "NEOPLASM.DISEASESTAGE"                 
 [7] "PATHOLOGY.T.STAGE"                     
 [8] "PATHOLOGY.N.STAGE"                     
 [9] "PATHOLOGY.M.STAGE"                     
[10] "DCCUPLOADDATE"                         
[11] "GENDER"                                
[12] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
[13] "DAYSTOLASTKNOWNALIVE"                  
[14] "RADIATIONTHERAPY"                      
[15] "KARNOFSKYPERFORMANCESCORE"             
[16] "HISTOLOGICALTYPE"                      
[17] "RADIATIONS.RADIATION.REGIMENINDICATION"
[18] "NUMBERPACKYEARSSMOKED"                 
[19] "YEAROFTOBACCOSMOKINGONSET"             
[20] "COMPLETENESS.OF.RESECTION"             
[21] "BATCHNUMBER"                           

Input Data has 21 rows and 172 columns.

[1] "Batch" "21"   
[1] "Last Follow UP"
TCGA-05-4244 TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 
          NA         1523           NA          606          426         1369 
TCGA-05-4390 TCGA-05-4395 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 
        1126           NA           NA           NA         1431           NA 
TCGA-05-4403 TCGA-05-4405 TCGA-05-4410 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
         578          610           NA           NA          454           NA 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
         911          365          913          669          791          791 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
         761          761          730           NA          457          151 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
         881          670           30           62           14          224 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
         181          264         2973         3674         1147         1491 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
         863         1073          354         1357          448          667 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
        1429          400         1367          741         1280         1301 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
          97          246         1130         1163          715          189 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
         722          417          383          407          328          302 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
         845          362          165          370         1938           NA 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
        1110           NA         2318           NA           NA           NA 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
        1081         1421          428          999          268          896 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
         157         1700          457          369          890          521 
TCGA-49-6767 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
          NA           NA         2174         2146          455          785 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
         944         1499          245          282          267         1091 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
        2369          653           NA           NA          567          882 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
         764          686           NA           NA           NA           NA 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
          NA           NA         1015          701         1178         1479 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
        1374           87            2          992           24         1728 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
         628         1189         1126         2676           62         1305 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
         864         1559          865           30          609          573 
TCGA-67-3773 TCGA-67-3774 TCGA-67-4679 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
         427          385           NA          173          140          422 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
          61         1599          711          911          799          467 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-75-5122 TCGA-75-5125 
         130           40          164           38           NA           NA 
TCGA-75-5126 TCGA-75-5146 TCGA-75-5147 TCGA-75-6203 TCGA-75-6205 TCGA-75-6206 
          NA           NA           NA           NA           NA           NA 
TCGA-75-6207 TCGA-75-6211 TCGA-75-6212 TCGA-80-5611 TCGA-86-6562 TCGA-91-6828 
          NA           NA           NA           NA           NA          323 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
          NA          309           79          417 
Variable 1:'AGE':	nDistinctValues=44,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYSTODEATH':	nDistinctValues=57,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=125,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'NEOPLASM.DISEASESTAGE':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'PATHOLOGY.T.STAGE':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'PATHOLOGY.N.STAGE':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'PATHOLOGY.M.STAGE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=18,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 13:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=41,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 14:'RADIATION.THERAPY':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 15:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=6,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 16:'HISTOLOGICAL.TYPE':	nDistinctValues=11,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 18:'NUMBERPACKYEARSSMOKED':	nDistinctValues=47,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 19:'YEAROFTOBACCOSMOKINGONSET':	nDistinctValues=39,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 20:'COMPLETENESS.OF.RESECTION':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 21:'BATCH.NUMBER':	nDistinctValues=9,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                                   
 [2] "NEOPLASM.DISEASESTAGE"                 
 [3] "PATHOLOGY.T.STAGE"                     
 [4] "PATHOLOGY.N.STAGE"                     
 [5] "PATHOLOGY.M.STAGE"                     
 [6] "GENDER"                                
 [7] "KARNOFSKY.PERFORMANCE.SCORE"           
 [8] "HISTOLOGICAL.TYPE"                     
 [9] "RADIATIONS.RADIATION.REGIMENINDICATION"
[10] "NUMBERPACKYEARSSMOKED"                 
[11] "YEAROFTOBACCOSMOKINGONSET"             
[12] "COMPLETENESS.OF.RESECTION"             
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "3"          
[1] "PATHOLOGY.N" "4"          
Output Data has 172 columns, 1 survival variables, and 12 non-survival variables.
AGE, nv=44, binary=FALSE, numeric=TRUE
NEOPLASM.DISEASESTAGE, nv=7, binary=FALSE, numeric=FALSE
PATHOLOGY.T.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T1  T2  T3  T4 
 41 109  14   8 
[1] "table(vv)"
vv
 T1  T2  T3  T4 
 41 109  14   8 
$ClinVariableName
[1] "PATHOLOGY.T.STAGE"

$Table
vv
 T1  T2  T3  T4 
 41 109  14   8 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 T1  T2  T3  T4 
 41 109  14   8 
PATHOLOGY.N.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
N0 N1 N2 N3 
95 37 34  1 
[1] "table(vv)"
vv
   N0    N1 N2+N3 
   95    37    35 
$ClinVariableName
[1] "PATHOLOGY.N.STAGE"

$Table
vv
N0 N1 N2 N3 
95 37 34  1 

$nClasses
[1] 3

$ClinVariableType
[1] "multiclass(3)"


   N0    N1 N2+N3 
   95    37    35 
PATHOLOGY.M.STAGE, nv=3, binary=FALSE, numeric=FALSE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=6, binary=FALSE, numeric=TRUE
HISTOLOGICAL.TYPE, nv=11, binary=FALSE, numeric=FALSE
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
NUMBERPACKYEARSSMOKED, nv=47, binary=FALSE, numeric=TRUE
YEAROFTOBACCOSMOKINGONSET, nv=39, binary=FALSE, numeric=TRUE
COMPLETENESS.OF.RESECTION, nv=4, binary=FALSE, numeric=FALSE

Clustering(1) Variable = CDKN2A MUTATION ANALYSIS
D1V1, survival
                  sevent
clus2               0  1
  CDKN2A MUTATED    6  2
  CDKN2A WILD-TYPE 93 54
  CDKN2A MUTATED CDKN2A WILD-TYPE 
               8              147 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
               2               54 
$`CDKN2A MUTATED`
TCGA-05-4426 TCGA-05-4433 TCGA-38-4625 TCGA-44-5645 TCGA-49-4505 TCGA-50-6595 
       26.01        24.00        97.74        12.59        14.07         6.21 
TCGA-55-1594 TCGA-67-3771 
       38.73        20.02 

$`CDKN2A WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4434 TCGA-05-5420 
       21.99        26.01        25.02        25.02        15.02        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        4.96        28.96        22.03         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        7.36         5.95         8.68       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61        14.73        21.93 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       46.98        13.15        44.94        24.36        42.08        42.77 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        37.15        38.24        23.51         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       23.74        13.71        13.38        10.78         9.93        27.78 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
       11.90         5.42        12.16        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       46.72        32.84         8.81        29.46         5.16        55.89 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        29.26        17.13        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       70.55        14.96        25.81        31.04        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12        18.64        29.00        25.12        22.55        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6597 TCGA-55-1592 
        3.88        25.51        11.05        12.16        33.37        23.05 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        87.98         2.04 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 
       42.90        28.41        51.25        28.44         0.99        18.84 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
       14.04        12.66         5.69         4.60        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        26.27        15.35         4.27 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 
        1.32         5.39         1.25        12.36        10.62        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       10.16         2.60        13.71 

  CDKN2A MUTATED CDKN2A WILD-TYPE 
            6.21             0.07 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
           97.74           120.79 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
           22.01            20.65 
[1] "6.2 - 97.7 (22.0)"  "0.1 - 120.8 (20.6)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
[1] "hr=" "1.8"
D1V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  CDKN2A MUTATED          2        3         0         1          2          0
  CDKN2A WILD-TYPE       35       50        11        22         31          6
                  vv
clus               STAGE IV
  CDKN2A MUTATED          0
  CDKN2A WILD-TYPE        9
D1V3, multiclass
                  vv
clus                T1  T2  T3  T4
  CDKN2A MUTATED     2   6   0   0
  CDKN2A WILD-TYPE  39 103  14   8
D1V4, multiclass
    clus
vv   CDKN2A MUTATED CDKN2A WILD-TYPE
  T1              2               39
  T2              6              103
  T3              0               14
  T4              0                8
                  vv
clus               N0 N1 N2+N3
  CDKN2A MUTATED    4  1     2
  CDKN2A WILD-TYPE 91 36    33
D1V5, multiclass
       clus
vv      CDKN2A MUTATED CDKN2A WILD-TYPE
  N0                 4               91
  N1                 1               36
  N2+N3              2               33
                  vv
clus                M0  M1  MX
  CDKN2A MUTATED     7   0   0
  CDKN2A WILD-TYPE 136   9  18
D1V6, multiclass
    clus
vv   CDKN2A MUTATED CDKN2A WILD-TYPE
  M0              7              136
  M1              0                9
  MX              0               18
D1V7, binary
                  cls
clus                0  1
  CDKN2A MUTATED    5  3
  CDKN2A WILD-TYPE 88 76
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CDKN2A MUTATED      5    3
  CDKN2A WILD-TYPE   88   76
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  FEMALE              5               88
  MALE                3               76
D1V8, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  CDKN2A MUTATED                            0                                 2
  CDKN2A WILD-TYPE                          2                                37
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CDKN2A MUTATED                                                    6
  CDKN2A WILD-TYPE                                                109
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  CDKN2A MUTATED                                            0
  CDKN2A WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  CDKN2A MUTATED                                               0
  CDKN2A WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  CDKN2A MUTATED                                0
  CDKN2A WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  CDKN2A MUTATED                                    0
  CDKN2A WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  CDKN2A MUTATED                              0                             0
  CDKN2A WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  CDKN2A MUTATED                                               0
  CDKN2A WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  CDKN2A MUTATED                              0
  CDKN2A WILD-TYPE                            2
D1V9, multiclass
D1V10, binary
                  cls
clus                 0   1
  CDKN2A MUTATED     0   8
  CDKN2A WILD-TYPE  14 150
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CDKN2A MUTATED      0    8
  CDKN2A WILD-TYPE   14  150
     clus
vv    CDKN2A MUTATED CDKN2A WILD-TYPE
  NO               0               14
  YES              8              150
D1V11, continuous
D1V12, continuous
                  vv
clus                R0  R1  R2  RX
  CDKN2A MUTATED     6   0   0   0
  CDKN2A WILD-TYPE 109   6   4   9
D1V13, multiclass
    clus
vv   CDKN2A MUTATED CDKN2A WILD-TYPE
  R0              6              109
  R1              0                6
  R2              0                4
  RX              0                9

Clustering(2) Variable = KRAS MUTATION ANALYSIS
D2V1, survival
                sevent
clus2             0  1
  KRAS MUTATED   27 15
  KRAS WILD-TYPE 72 41
  KRAS MUTATED KRAS WILD-TYPE 
            42            113 
  KRAS MUTATED KRAS WILD-TYPE 
            15             41 
$`KRAS MUTATED`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4390 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       50.07         3.98        37.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-35-3615 
       14.93         8.98        26.01        25.02        24.00         0.46 
TCGA-38-4626 TCGA-44-2668 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6776 
      120.79         8.09        13.38        10.78         9.93        63.72 
TCGA-44-6777 TCGA-49-4505 TCGA-49-4510 TCGA-49-6744 TCGA-50-5051 TCGA-50-5932 
       32.45        14.07        29.46        29.26        14.96        35.87 
TCGA-50-5933 TCGA-50-5936 TCGA-50-5941 TCGA-55-1595 TCGA-55-6642 TCGA-64-1677 
       77.88         8.45        18.64        48.62        32.61        20.65 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5815 TCGA-67-3773 TCGA-67-3774 
       87.98         2.04        42.90        28.44        14.04        12.66 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4670 TCGA-73-4677 TCGA-91-6828 TCGA-91-6836 
       23.38        29.95         4.27         1.25        10.62        13.71 

$`KRAS WILD-TYPE`
TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
       19.92        14.01        45.01         9.96        24.03        47.05 
TCGA-05-4402 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.02        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4432 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 
       25.02        15.02        15.02         4.96        28.96        22.03 
TCGA-05-5429 TCGA-05-5715 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        0.99         2.04         7.36         5.95         8.68        97.74 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       14.73        21.93        46.98        13.15        44.94        24.36 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       42.08        42.77         3.19        37.15        38.24        23.51 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6147 TCGA-44-6148 
        6.21        23.74        13.71        12.59        27.78        11.90 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
        5.42        12.16        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 
       28.57        12.66        35.54        46.72        32.84         8.81 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6745 TCGA-50-5044 
        5.16        55.89        15.02        12.13        17.13        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       71.47        70.55        25.81        31.04        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5935 TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 
        9.27         8.78        21.47        15.12        29.00        25.12 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       22.55        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 
        6.21        33.37        23.05        38.73        45.17         2.86 
TCGA-55-6543 TCGA-55-6712 TCGA-64-1676 TCGA-64-1678 TCGA-64-1680 TCGA-64-5779 
        0.07         0.79        56.81        39.09        37.02        28.41 
TCGA-64-5781 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-6215 TCGA-67-6216 
       51.25         0.99        20.02        18.84         5.69         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4666 TCGA-73-4668 TCGA-73-4675 
       13.87         2.01        52.57        26.27        15.35         1.32 
TCGA-73-4676 TCGA-86-6562 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        5.39        12.36        41.33        10.16         2.60 

  KRAS MUTATED KRAS WILD-TYPE 
          0.46           0.07 
  KRAS MUTATED KRAS WILD-TYPE 
        120.79          97.74 
  KRAS MUTATED KRAS WILD-TYPE 
        19.525         21.930 
[1] "0.5 - 120.8 (19.5)" "0.1 - 97.7 (21.9)" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
  "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
  "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
  "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
  "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
  "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
  "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
[1] "hr=" "1.1"
D2V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  KRAS MUTATED          7       18         2         6          9          3
  KRAS WILD-TYPE       30       35         9        17         24          3
                vv
clus             STAGE IV
  KRAS MUTATED          2
  KRAS WILD-TYPE        7
D2V3, multiclass
                vv
clus             T1 T2 T3 T4
  KRAS MUTATED    6 32  5  4
  KRAS WILD-TYPE 35 77  9  4
D2V4, multiclass
    clus
vv   KRAS MUTATED KRAS WILD-TYPE
  T1            6             35
  T2           32             77
  T3            5              9
  T4            4              4
                vv
clus             N0 N1 N2+N3
  KRAS MUTATED   28  7    11
  KRAS WILD-TYPE 67 30    24
D2V5, multiclass
       clus
vv      KRAS MUTATED KRAS WILD-TYPE
  N0              28             67
  N1               7             30
  N2+N3           11             24
                vv
clus              M0  M1  MX
  KRAS MUTATED    40   2   5
  KRAS WILD-TYPE 103   7  13
D2V6, multiclass
    clus
vv   KRAS MUTATED KRAS WILD-TYPE
  M0           40            103
  M1            2              7
  MX            5             13
D2V7, binary
                cls
clus              0  1
  KRAS MUTATED   23 24
  KRAS WILD-TYPE 70 55
[1] "tbl2"
                cls
clus             [,1] [,2]
  KRAS MUTATED     23   24
  KRAS WILD-TYPE   70   55
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  FEMALE           23             70
  MALE             24             55
D2V8, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  KRAS MUTATED                            0                                12
  KRAS WILD-TYPE                          2                                27
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  KRAS MUTATED                                                   30
  KRAS WILD-TYPE                                                 85
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  KRAS MUTATED                                            0
  KRAS WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  KRAS MUTATED                                               1
  KRAS WILD-TYPE                                             1
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  KRAS MUTATED                                1
  KRAS WILD-TYPE                              1
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  KRAS MUTATED                                    0
  KRAS WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  KRAS MUTATED                              1                             1
  KRAS WILD-TYPE                            1                             3
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  KRAS MUTATED                                               0
  KRAS WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  KRAS MUTATED                              1
  KRAS WILD-TYPE                            1
D2V9, multiclass
D2V10, binary
                cls
clus               0   1
  KRAS MUTATED     2  45
  KRAS WILD-TYPE  12 113
[1] "tbl2"
                cls
clus             [,1] [,2]
  KRAS MUTATED      2   45
  KRAS WILD-TYPE   12  113
     clus
vv    KRAS MUTATED KRAS WILD-TYPE
  NO             2             12
  YES           45            113
D2V11, continuous
D2V12, continuous
                vv
clus             R0 R1 R2 RX
  KRAS MUTATED   32  0  2  3
  KRAS WILD-TYPE 83  6  2  6
D2V13, multiclass
    clus
vv   KRAS MUTATED KRAS WILD-TYPE
  R0           32             83
  R1            0              6
  R2            2              2
  RX            3              6

Clustering(3) Variable = TP53 MUTATION ANALYSIS
D3V1, survival
                sevent
clus2             0  1
  TP53 MUTATED   51 28
  TP53 WILD-TYPE 48 28
  TP53 MUTATED TP53 WILD-TYPE 
            79             76 
  TP53 MUTATED TP53 WILD-TYPE 
            28             28 
$`TP53 MUTATED`
TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 
       19.92        14.01         9.96        24.03        47.05         8.02 
TCGA-05-4405 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
       20.05        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-5423 TCGA-05-5428 TCGA-35-4122 TCGA-35-4123 
       25.02        24.00         4.96        22.03         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 
        8.68        97.74        28.37        35.28        44.61        14.73 
TCGA-44-2656 TCGA-44-2659 TCGA-44-2662 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
       46.98        44.94        42.08         3.19         8.09        37.15 
TCGA-44-3918 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6147 
       23.51        13.71        12.59        13.38        10.78        27.78 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4487 
        5.42        12.16        32.45        36.49        16.41        28.11 
TCGA-49-4490 TCGA-49-4505 TCGA-49-4514 TCGA-50-5045 TCGA-50-5049 TCGA-50-5066 
       12.66        14.07        55.89        71.47        70.55        31.04 
TCGA-50-5068 TCGA-50-5931 TCGA-50-5933 TCGA-50-5939 TCGA-50-5941 TCGA-50-5944 
       49.28         8.78        77.88        15.12        18.64        25.12 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       22.55        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6712 
        6.21        23.05        38.73        45.17         2.86         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-5775 TCGA-64-5778 TCGA-67-3770 
       56.81        20.65        39.09         2.04        42.90         0.99 
TCGA-67-3771 TCGA-73-4666 TCGA-73-4670 TCGA-73-4676 TCGA-91-6829 TCGA-91-6831 
       20.02        26.27         4.27         5.39        41.33        10.16 
TCGA-91-6836 
       13.71 

$`TP53 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4389 TCGA-05-4390 TCGA-05-4403 TCGA-05-4415 
       50.07         3.98        45.01        37.02        19.00         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4422 TCGA-05-4425 TCGA-05-4434 TCGA-05-5420 
       14.93         8.98        12.00        21.99        15.02        15.02 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-38-4626 TCGA-38-4627 
       28.96         0.99         2.04         0.46       120.79        37.71 
TCGA-38-4628 TCGA-38-4631 TCGA-44-2655 TCGA-44-2657 TCGA-44-2661 TCGA-44-2665 
       49.02        11.64        21.93        13.15        24.36        42.77 
TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-6146 TCGA-44-6148 TCGA-44-6776 
       38.24         6.21        23.74         9.93        11.90        63.72 
TCGA-49-4486 TCGA-49-4488 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 
       76.21        28.57        35.54        46.72        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.46         5.16        15.02        12.13        29.26        17.13 
TCGA-50-5044 TCGA-50-5051 TCGA-50-5055 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 
       20.48        14.96        25.81         8.05         9.27        35.87 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5942 TCGA-50-6597 TCGA-55-1595 TCGA-55-6543 
       21.47         8.45        29.00        33.37        48.62         0.07 
TCGA-55-6642 TCGA-64-1680 TCGA-64-5774 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       32.61        37.02        87.98        28.41        51.25        28.44 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
       18.84        14.04        12.66         5.69         4.60        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 TCGA-73-4675 
        2.01        52.57        23.38        29.95        15.35         1.32 
TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6835 
        1.25        12.36        10.62         2.60 

  TP53 MUTATED TP53 WILD-TYPE 
          0.79           0.07 
  TP53 MUTATED TP53 WILD-TYPE 
         97.74         120.79 
  TP53 MUTATED TP53 WILD-TYPE 
         22.55          18.92 
[1] "0.8 - 97.7 (22.6)"  "0.1 - 120.8 (18.9)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
[1] "hr=" "1.1"
D3V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  TP53 MUTATED         19       27         4        13         15          4
  TP53 WILD-TYPE       18       26         7        10         18          2
                vv
clus             STAGE IV
  TP53 MUTATED          5
  TP53 WILD-TYPE        4
D3V3, multiclass
                vv
clus             T1 T2 T3 T4
  TP53 MUTATED   21 56  5  5
  TP53 WILD-TYPE 20 53  9  3
D3V4, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  T1           21             20
  T2           56             53
  T3            5              9
  T4            5              3
                vv
clus             N0 N1 N2+N3
  TP53 MUTATED   49 17    17
  TP53 WILD-TYPE 46 20    18
D3V5, multiclass
       clus
vv      TP53 MUTATED TP53 WILD-TYPE
  N0              49             46
  N1              17             20
  N2+N3           17             18
                vv
clus             M0 M1 MX
  TP53 MUTATED   69  5 11
  TP53 WILD-TYPE 74  4  7
D3V6, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  M0           69             74
  M1            5              4
  MX           11              7
D3V7, binary
                cls
clus              0  1
  TP53 MUTATED   43 44
  TP53 WILD-TYPE 50 35
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED     43   44
  TP53 WILD-TYPE   50   35
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  FEMALE           43             50
  MALE             44             35
D3V8, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  TP53 MUTATED                            1                                22
  TP53 WILD-TYPE                          1                                17
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  TP53 MUTATED                                                   60
  TP53 WILD-TYPE                                                 55
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  TP53 MUTATED                                            0
  TP53 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  TP53 MUTATED                                               2
  TP53 WILD-TYPE                                             0
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  TP53 MUTATED                                0
  TP53 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  TP53 MUTATED                                    0
  TP53 WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  TP53 MUTATED                              0                             2
  TP53 WILD-TYPE                            2                             2
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  TP53 MUTATED                                               0
  TP53 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  TP53 MUTATED                              0
  TP53 WILD-TYPE                            2
D3V9, multiclass
D3V10, binary
                cls
clus              0  1
  TP53 MUTATED    7 80
  TP53 WILD-TYPE  7 78
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED      7   80
  TP53 WILD-TYPE    7   78
     clus
vv    TP53 MUTATED TP53 WILD-TYPE
  NO             7              7
  YES           80             78
D3V11, continuous
D3V12, continuous
                vv
clus             R0 R1 R2 RX
  TP53 MUTATED   54  3  1  4
  TP53 WILD-TYPE 61  3  3  5
D3V13, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  R0           54             61
  R1            3              3
  R2            1              3
  RX            4              5

Clustering(4) Variable = EGFR MUTATION ANALYSIS
D4V1, survival
                sevent
clus2             0  1
  EGFR MUTATED    9 10
  EGFR WILD-TYPE 90 46
  EGFR MUTATED EGFR WILD-TYPE 
            19            136 
  EGFR MUTATED EGFR WILD-TYPE 
            10             46 
$`EGFR MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4402 TCGA-05-5423 TCGA-38-4627 TCGA-38-4628 
       19.92         9.96         8.02         4.96        37.71        49.02 
TCGA-38-4629 TCGA-38-6178 TCGA-44-6147 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       28.37        14.73        27.78        12.66        35.54        46.72 
TCGA-50-5944 TCGA-50-6591 TCGA-50-6595 TCGA-67-3770 TCGA-67-3772 TCGA-67-6217 
       25.12         3.88         6.21         0.99        18.84        13.87 
TCGA-91-6835 
        2.60 

$`EGFR WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4397 
       50.07         3.98        14.01        45.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05        19.00        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
       29.95        12.00        30.02        21.99        26.01        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 
       25.02        25.02        24.00        15.02        15.02        28.96 
TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
       22.03         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
        8.68        97.74       120.79        35.28        11.64        44.61 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       21.93        46.98        13.15        44.94        24.36        42.08 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       42.77         3.19         8.09        37.15        38.24        23.51 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21        23.74        13.71        12.59        13.38        10.78 
TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        9.93        11.90         5.42        12.16        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4505 
       36.49        16.41        76.21        28.11        28.57        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46         5.16        55.89        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        29.26        17.13        20.48        71.47        70.55 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81        31.04        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 TCGA-50-6593 
       18.64        29.00        22.55        42.31        25.51        11.05 
TCGA-50-6594 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       12.16        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        87.98         2.04        42.90        28.41 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
       51.25        28.44        20.02        14.04        12.66         5.69 
TCGA-67-6216 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
        4.60         2.01        52.57        23.38        29.95        26.27 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 
       15.35         4.27         1.32         5.39         1.25        12.36 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6836 
       10.62        41.33        10.16        13.71 

  EGFR MUTATED EGFR WILD-TYPE 
          0.99           0.07 
  EGFR MUTATED EGFR WILD-TYPE 
         49.02         120.79 
  EGFR MUTATED EGFR WILD-TYPE 
         14.73          21.96 
[1] "1.0 - 49.0 (14.7)"  "0.1 - 120.8 (22.0)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"EGFR WILD-TYPE"   "EGFR MUTATED"   "EGFR MUTATED"   "EGFR MUTATED" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED"   "EGFR MUTATED" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"EGFR WILD-TYPE"   "EGFR MUTATED"   "EGFR MUTATED"   "EGFR MUTATED" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED"   "EGFR MUTATED" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"EGFR WILD-TYPE"   "EGFR MUTATED"   "EGFR MUTATED"   "EGFR MUTATED" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED"   "EGFR MUTATED" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
[1] "hr=" "2.2"
D4V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  EGFR MUTATED          4        4         3         3          5          1
  EGFR WILD-TYPE       33       49         8        20         28          5
                vv
clus             STAGE IV
  EGFR MUTATED          2
  EGFR WILD-TYPE        7
D4V3, multiclass
                vv
clus             T1 T2 T3 T4
  EGFR MUTATED    5 13  3  1
  EGFR WILD-TYPE 36 96 11  7
D4V4, multiclass
    clus
vv   EGFR MUTATED EGFR WILD-TYPE
  T1            5             36
  T2           13             96
  T3            3             11
  T4            1              7
                vv
clus             N0 N1 N2+N3
  EGFR MUTATED    9  6     5
  EGFR WILD-TYPE 86 31    30
D4V5, multiclass
       clus
vv      EGFR MUTATED EGFR WILD-TYPE
  N0               9             86
  N1               6             31
  N2+N3            5             30
                vv
clus              M0  M1  MX
  EGFR MUTATED    19   2   0
  EGFR WILD-TYPE 124   7  18
D4V6, multiclass
    clus
vv   EGFR MUTATED EGFR WILD-TYPE
  M0           19            124
  M1            2              7
  MX            0             18
D4V7, binary
                cls
clus              0  1
  EGFR MUTATED   15  7
  EGFR WILD-TYPE 78 72
[1] "tbl2"
                cls
clus             [,1] [,2]
  EGFR MUTATED     15    7
  EGFR WILD-TYPE   78   72
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  FEMALE           15             78
  MALE              7             72
D4V8, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  EGFR MUTATED                            1                                 5
  EGFR WILD-TYPE                          1                                34
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  EGFR MUTATED                                                   15
  EGFR WILD-TYPE                                                100
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  EGFR MUTATED                                            0
  EGFR WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  EGFR MUTATED                                               0
  EGFR WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  EGFR MUTATED                                0
  EGFR WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  EGFR MUTATED                                    1
  EGFR WILD-TYPE                                  1
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  EGFR MUTATED                              0                             0
  EGFR WILD-TYPE                            2                             4
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  EGFR MUTATED                                               0
  EGFR WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  EGFR MUTATED                              0
  EGFR WILD-TYPE                            2
D4V9, multiclass
D4V10, binary
                cls
clus               0   1
  EGFR MUTATED     0  22
  EGFR WILD-TYPE  14 136
[1] "tbl2"
                cls
clus             [,1] [,2]
  EGFR MUTATED      0   22
  EGFR WILD-TYPE   14  136
     clus
vv    EGFR MUTATED EGFR WILD-TYPE
  NO             0             14
  YES           22            136
D4V11, continuous
D4V12, continuous
                vv
clus              R0  R1  R2  RX
  EGFR MUTATED    14   1   1   1
  EGFR WILD-TYPE 101   5   3   8
D4V13, multiclass
    clus
vv   EGFR MUTATED EGFR WILD-TYPE
  R0           14            101
  R1            1              5
  R2            1              3
  RX            1              8

Clustering(5) Variable = KRTAP5-5 MUTATION ANALYSIS
D5V1, survival
                    sevent
clus2                 0  1
  KRTAP5-5 MUTATED    7 10
  KRTAP5-5 WILD-TYPE 92 46
  KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE 
                17                138 
  KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE 
                10                 46 
$`KRTAP5-5 MUTATED`
TCGA-05-4396 TCGA-05-5428 TCGA-38-4628 TCGA-44-2656 TCGA-44-2668 TCGA-44-6148 
        9.96        22.03        49.02        46.98         8.09        11.90 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-50-5933 TCGA-50-5944 TCGA-50-6591 
       35.54        46.72        32.84        77.88        25.12         3.88 
TCGA-50-6593 TCGA-55-1592 TCGA-64-5778 TCGA-64-5815 TCGA-67-3773 
       11.05        23.05        42.90        28.44        14.04 

$`KRTAP5-5 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
       15.02         4.96        28.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61        14.73        21.93 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        44.94        24.36        42.08        42.77         3.19 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       37.15        38.24        23.51         6.21        23.74        13.71 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6774 
       12.59        13.38        10.78         9.93        27.78         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
       12.16        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4505 TCGA-49-4507 TCGA-49-4510 
       28.11        28.57        12.66        14.07         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
        5.16        55.89        15.02        12.13        29.26        17.13 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        70.55        14.96        25.81        31.04 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 
       49.28         8.05         9.27         8.78        35.87        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5946 TCGA-50-6590 
        8.45        15.12        18.64        29.00        22.55        42.31 
TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 
       25.51        12.16         6.21        33.37        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 
       20.65        39.09        37.02        87.98         2.04        28.41 
TCGA-64-5781 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3774 TCGA-67-6215 
       51.25         0.99        20.02        18.84        12.66         5.69 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        4.60        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       26.27        15.35         4.27         1.32         5.39         1.25 
TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       12.36        10.62        41.33        10.16         2.60        13.71 

  KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE 
              3.88               0.07 
  KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE 
             77.88             120.79 
  KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE 
            25.120             20.035 
[1] "3.9 - 77.9 (25.1)"  "0.1 - 120.8 (20.0)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
  "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-44-2655 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
  "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5645 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-49-4486 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
  "KRTAP5-5 MUTATED"   "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
  "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-50-5044         TCGA-50-5045         TCGA-50-5049 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-50-5051         TCGA-50-5055         TCGA-50-5066 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-50-5068         TCGA-50-5072         TCGA-50-5930 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-50-5931         TCGA-50-5932         TCGA-50-5933 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" 
        TCGA-50-5935         TCGA-50-5936         TCGA-50-5939 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-50-5941         TCGA-50-5942         TCGA-50-5944 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" 
        TCGA-50-5946         TCGA-50-6590         TCGA-50-6591 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" 
        TCGA-50-6592         TCGA-50-6593         TCGA-50-6594 
"KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" 
        TCGA-50-6595         TCGA-50-6597         TCGA-55-1592 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-55-6712         TCGA-64-1676         TCGA-64-1677 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1680         TCGA-64-5774 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-67-6217         TCGA-71-6725         TCGA-73-4658 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-73-4659         TCGA-73-4662         TCGA-73-4666 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-73-4668         TCGA-73-4670         TCGA-73-4675 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-73-4676         TCGA-73-4677         TCGA-86-6562 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
  "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-44-2655 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
  "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5645 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-49-4486 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
  "KRTAP5-5 MUTATED"   "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
  "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-50-5044         TCGA-50-5045         TCGA-50-5049 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-50-5051         TCGA-50-5055         TCGA-50-5066 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-50-5068         TCGA-50-5072         TCGA-50-5930 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-50-5931         TCGA-50-5932         TCGA-50-5933 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" 
        TCGA-50-5935         TCGA-50-5936         TCGA-50-5939 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-50-5941         TCGA-50-5942         TCGA-50-5944 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" 
        TCGA-50-5946         TCGA-50-6590         TCGA-50-6591 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" 
        TCGA-50-6592         TCGA-50-6593         TCGA-50-6594 
"KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" 
        TCGA-50-6595         TCGA-50-6597         TCGA-55-1592 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-55-6712         TCGA-64-1676         TCGA-64-1677 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1680         TCGA-64-5774 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-67-6217         TCGA-71-6725         TCGA-73-4658 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-73-4659         TCGA-73-4662         TCGA-73-4666 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-73-4668         TCGA-73-4670         TCGA-73-4675 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-73-4676         TCGA-73-4677         TCGA-86-6562 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
  "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-44-2655 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
  "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5645 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-49-4486 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
  "KRTAP5-5 MUTATED"   "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
  "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-50-5044         TCGA-50-5045         TCGA-50-5049 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-50-5051         TCGA-50-5055         TCGA-50-5066 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-50-5068         TCGA-50-5072         TCGA-50-5930 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-50-5931         TCGA-50-5932         TCGA-50-5933 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" 
        TCGA-50-5935         TCGA-50-5936         TCGA-50-5939 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-50-5941         TCGA-50-5942         TCGA-50-5944 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" 
        TCGA-50-5946         TCGA-50-6590         TCGA-50-6591 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" 
        TCGA-50-6592         TCGA-50-6593         TCGA-50-6594 
"KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" 
        TCGA-50-6595         TCGA-50-6597         TCGA-55-1592 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-55-6712         TCGA-64-1676         TCGA-64-1677 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1680         TCGA-64-5774 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-67-6217         TCGA-71-6725         TCGA-73-4658 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-73-4659         TCGA-73-4662         TCGA-73-4666 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-73-4668         TCGA-73-4670         TCGA-73-4675 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-73-4676         TCGA-73-4677         TCGA-86-6562 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
[1] "hr=" "1.4"
D5V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  KRTAP5-5 MUTATED          3        8         2         3          2
  KRTAP5-5 WILD-TYPE       34       45         9        20         31
                    vv
clus                 STAGE IIIB STAGE IV
  KRTAP5-5 MUTATED            2        1
  KRTAP5-5 WILD-TYPE          4        8
D5V3, multiclass
                    vv
clus                 T1 T2 T3 T4
  KRTAP5-5 MUTATED    4 13  2  2
  KRTAP5-5 WILD-TYPE 37 96 12  6
D5V4, multiclass
    clus
vv   KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  T1                4                 37
  T2               13                 96
  T3                2                 12
  T4                2                  6
                    vv
clus                 N0 N1 N2+N3
  KRTAP5-5 MUTATED   12  6     3
  KRTAP5-5 WILD-TYPE 83 31    32
D5V5, multiclass
       clus
vv      KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  N0                  12                 83
  N1                   6                 31
  N2+N3                3                 32
                    vv
clus                  M0  M1  MX
  KRTAP5-5 MUTATED    20   1   0
  KRTAP5-5 WILD-TYPE 123   8  18
D5V6, multiclass
    clus
vv   KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  M0               20                123
  M1                1                  8
  MX                0                 18
D5V7, binary
                    cls
clus                  0  1
  KRTAP5-5 MUTATED    9 12
  KRTAP5-5 WILD-TYPE 84 67
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KRTAP5-5 MUTATED      9   12
  KRTAP5-5 WILD-TYPE   84   67
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  FEMALE                9                 84
  MALE                 12                 67
D5V8, continuous
[1] "Remove cluster labels:" "KRTAP5-5 MUTATED"      
clus
  KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE 
                 1                 11 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-64-1677         TCGA-71-6725         TCGA-73-4659 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-73-4676         TCGA-75-5122 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  KRTAP5-5 MUTATED                            1
  KRTAP5-5 WILD-TYPE                          1
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  KRTAP5-5 MUTATED                                   4
  KRTAP5-5 WILD-TYPE                                35
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  KRTAP5-5 MUTATED                                                   13
  KRTAP5-5 WILD-TYPE                                                102
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  KRTAP5-5 MUTATED                                            0
  KRTAP5-5 WILD-TYPE                                          1
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  KRTAP5-5 MUTATED                                               1
  KRTAP5-5 WILD-TYPE                                             1
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  KRTAP5-5 MUTATED                                0
  KRTAP5-5 WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  KRTAP5-5 MUTATED                                    1
  KRTAP5-5 WILD-TYPE                                  1
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  KRTAP5-5 MUTATED                              1                             0
  KRTAP5-5 WILD-TYPE                            1                             4
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  KRTAP5-5 MUTATED                                               0
  KRTAP5-5 WILD-TYPE                                             1
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  KRTAP5-5 MUTATED                              0
  KRTAP5-5 WILD-TYPE                            2
D5V9, multiclass
D5V10, binary
                    cls
clus                   0   1
  KRTAP5-5 MUTATED     1  20
  KRTAP5-5 WILD-TYPE  13 138
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KRTAP5-5 MUTATED      1   20
  KRTAP5-5 WILD-TYPE   13  138
     clus
vv    KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  NO                 1                 13
  YES               20                138
D5V11, continuous
D5V12, continuous
                    vv
clus                 R0 R1 R2 RX
  KRTAP5-5 MUTATED   16  1  0  1
  KRTAP5-5 WILD-TYPE 99  5  4  8
D5V13, multiclass
    clus
vv   KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  R0               16                 99
  R1                1                  5
  R2                0                  4
  RX                1                  8

Clustering(6) Variable = STK11 MUTATION ANALYSIS
D6V1, survival
                 sevent
clus2              0  1
  STK11 MUTATED    9  9
  STK11 WILD-TYPE 90 47
  STK11 MUTATED STK11 WILD-TYPE 
             18             137 
  STK11 MUTATED STK11 WILD-TYPE 
              9              47 
$`STK11 MUTATED`
TCGA-05-4415 TCGA-05-4417 TCGA-05-4422 TCGA-05-4432 TCGA-35-3615 TCGA-44-6144 
        2.96        14.93        12.00        25.02         0.46        13.38 
TCGA-44-6776 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4507 TCGA-50-5072 
       63.72        16.41        76.21        28.11         8.81         8.05 
TCGA-50-5932 TCGA-50-5939 TCGA-55-1596 TCGA-67-3774 TCGA-73-4670 TCGA-73-4677 
       35.87        15.12        45.17        12.66         4.27         1.25 

$`STK11 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
        8.98        29.95        30.02        21.99        26.01        26.01 
TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02        15.02         4.96        28.96 
TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
       22.03         0.99         2.04         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       97.74       120.79        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61        14.73        21.93        46.98        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       44.94        24.36        42.08        42.77         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       37.15        38.24        23.51         6.21        23.74        13.71 
TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
       12.59        10.78         9.93        27.78        11.90         5.42 
TCGA-44-6775 TCGA-44-6777 TCGA-44-6778 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       12.16        32.45        36.49        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       46.72        14.07        32.84        29.46         5.16        55.89 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        29.26        17.13        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5930 
       70.55        14.96        25.81        31.04        49.28         9.27 
TCGA-50-5931 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5941 TCGA-50-5942 
        8.78        77.88        21.47         8.45        18.64        29.00 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       25.12        22.55        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        87.98         2.04        42.90        28.41 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       51.25        28.44         0.99        20.02        18.84        14.04 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        5.69         4.60        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-86-6562 
       29.95        26.27        15.35         1.32         5.39        12.36 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       10.62        41.33        10.16         2.60        13.71 

  STK11 MUTATED STK11 WILD-TYPE 
           0.46            0.07 
  STK11 MUTATED STK11 WILD-TYPE 
          76.21          120.79 
  STK11 MUTATED STK11 WILD-TYPE 
         14.155          21.990 
[1] "0.5 - 76.2 (14.2)"  "0.1 - 120.8 (22.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
  "STK11 MUTATED"   "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
  "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
  "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED"   "STK11 MUTATED" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
  "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
  "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
  "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
  "STK11 MUTATED"   "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
  "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
  "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED"   "STK11 MUTATED" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
  "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
  "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
  "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
  "STK11 MUTATED"   "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
  "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
  "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED"   "STK11 MUTATED" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
  "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
  "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE"   "STK11 MUTATED" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"STK11 WILD-TYPE"   "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
  "STK11 MUTATED" "STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"STK11 WILD-TYPE" "STK11 WILD-TYPE" "STK11 WILD-TYPE" 
[1] "hr=" "1.7"
D6V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  STK11 MUTATED          5        6         0         4          2          2
  STK11 WILD-TYPE       32       47        11        19         31          4
                 vv
clus              STAGE IV
  STK11 MUTATED          1
  STK11 WILD-TYPE        8
D6V3, multiclass
                 vv
clus              T1 T2 T3 T4
  STK11 MUTATED    4 13  1  2
  STK11 WILD-TYPE 37 96 13  6
D6V4, multiclass
    clus
vv   STK11 MUTATED STK11 WILD-TYPE
  T1             4              37
  T2            13              96
  T3             1              13
  T4             2               6
                 vv
clus              N0 N1 N2+N3
  STK11 MUTATED   12  5     3
  STK11 WILD-TYPE 83 32    32
D6V5, multiclass
       clus
vv      STK11 MUTATED STK11 WILD-TYPE
  N0               12              83
  N1                5              32
  N2+N3             3              32
                 vv
clus               M0  M1  MX
  STK11 MUTATED    17   1   2
  STK11 WILD-TYPE 126   8  16
D6V6, multiclass
    clus
vv   STK11 MUTATED STK11 WILD-TYPE
  M0            17             126
  M1             1               8
  MX             2              16
D6V7, binary
                 cls
clus               0  1
  STK11 MUTATED    7 13
  STK11 WILD-TYPE 86 66
[1] "tbl2"
                 cls
clus              [,1] [,2]
  STK11 MUTATED      7   13
  STK11 WILD-TYPE   86   66
        clus
vv       STK11 MUTATED STK11 WILD-TYPE
  FEMALE             7              86
  MALE              13              66
D6V8, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  STK11 MUTATED                            0                                 6
  STK11 WILD-TYPE                          2                                33
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  STK11 MUTATED                                                   14
  STK11 WILD-TYPE                                                101
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  STK11 MUTATED                                            0
  STK11 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  STK11 MUTATED                                               0
  STK11 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  STK11 MUTATED                                0
  STK11 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  STK11 MUTATED                                    0
  STK11 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  STK11 MUTATED                              0                             0
  STK11 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  STK11 MUTATED                                               0
  STK11 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  STK11 MUTATED                              0
  STK11 WILD-TYPE                            2
D6V9, multiclass
D6V10, binary
                 cls
clus                0   1
  STK11 MUTATED     2  18
  STK11 WILD-TYPE  12 140
[1] "tbl2"
                 cls
clus              [,1] [,2]
  STK11 MUTATED      2   18
  STK11 WILD-TYPE   12  140
     clus
vv    STK11 MUTATED STK11 WILD-TYPE
  NO              2              12
  YES            18             140
D6V11, continuous
D6V12, continuous
                 vv
clus               R0  R1  R2  RX
  STK11 MUTATED    13   0   0   2
  STK11 WILD-TYPE 102   6   4   7
D6V13, multiclass
    clus
vv   STK11 MUTATED STK11 WILD-TYPE
  R0            13             102
  R1             0               6
  R2             0               4
  RX             2               7

Clustering(7) Variable = KEAP1 MUTATION ANALYSIS
D7V1, survival
                 sevent
clus2              0  1
  KEAP1 MUTATED   17 12
  KEAP1 WILD-TYPE 82 44
  KEAP1 MUTATED KEAP1 WILD-TYPE 
             29             126 
  KEAP1 MUTATED KEAP1 WILD-TYPE 
             12              44 
$`KEAP1 MUTATED`
TCGA-05-4384 TCGA-05-4389 TCGA-05-4418 TCGA-35-3615 TCGA-35-5375 TCGA-38-4631 
       14.01        45.01         8.98         0.46         8.68        11.64 
TCGA-44-2655 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4488 
       21.93        63.72        36.49        16.41        76.21        28.57 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-50-5051 
       32.84         8.81        55.89        15.02        12.13        14.96 
TCGA-50-5068 TCGA-50-5936 TCGA-50-5939 TCGA-55-5899 TCGA-64-5781 TCGA-67-3771 
       49.28         8.45        15.12         2.86        51.25        20.02 
TCGA-67-3774 TCGA-73-4666 TCGA-73-4670 TCGA-73-4676 TCGA-73-4677 
       12.66        26.27         4.27         5.39         1.25 

$`KEAP1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       50.07         3.98        19.92        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
       29.95        12.00        30.02        21.99        26.01        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02        15.02         4.96 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-4122 TCGA-35-4123 
       28.96        22.03         0.99         2.04         7.36         5.95 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       97.74       120.79        37.71        49.02        28.37        35.28 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       44.61        14.73        46.98        13.15        44.94        24.36 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       42.08        42.77         3.19         8.09        37.15        38.24 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
       23.51         6.21        23.74        13.71        12.59        13.38 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
       10.78         9.93        27.78        11.90         5.42        12.16 
TCGA-44-6777 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       32.45        28.11        12.66        35.54        46.72        14.07 
TCGA-49-4510 TCGA-49-4512 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       29.46         5.16        29.26        17.13        20.48        71.47 
TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       70.55        25.81        31.04         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       35.87        77.88        21.47        18.64        29.00        25.12 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       22.55        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 
       37.02        87.98         2.04        42.90        28.41        28.44 
TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.99        18.84        14.04         5.69         4.60        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 TCGA-73-4675 
        2.01        52.57        23.38        29.95        15.35         1.32 
TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       12.36        10.62        41.33        10.16         2.60        13.71 

  KEAP1 MUTATED KEAP1 WILD-TYPE 
           0.46            0.07 
  KEAP1 MUTATED KEAP1 WILD-TYPE 
          76.21          120.79 
  KEAP1 MUTATED KEAP1 WILD-TYPE 
          15.02           22.29 
[1] "0.5 - 76.2 (15.0)"  "0.1 - 120.8 (22.3)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED"   "KEAP1 MUTATED" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
  "KEAP1 MUTATED"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED"   "KEAP1 MUTATED" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
  "KEAP1 MUTATED"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED"   "KEAP1 MUTATED" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
  "KEAP1 MUTATED"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
[1] "hr=" "1.2"
D7V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  KEAP1 MUTATED         10        7         1         4          7          1
  KEAP1 WILD-TYPE       27       46        10        19         26          5
                 vv
clus              STAGE IV
  KEAP1 MUTATED          2
  KEAP1 WILD-TYPE        7
D7V3, multiclass
                 vv
clus              T1 T2 T3 T4
  KEAP1 MUTATED   11 18  2  1
  KEAP1 WILD-TYPE 30 91 12  7
D7V4, multiclass
    clus
vv   KEAP1 MUTATED KEAP1 WILD-TYPE
  T1            11              30
  T2            18              91
  T3             2              12
  T4             1               7
                 vv
clus              N0 N1 N2+N3
  KEAP1 MUTATED   18  7     7
  KEAP1 WILD-TYPE 77 30    28
D7V5, multiclass
       clus
vv      KEAP1 MUTATED KEAP1 WILD-TYPE
  N0               18              77
  N1                7              30
  N2+N3             7              28
                 vv
clus               M0  M1  MX
  KEAP1 MUTATED    24   2   6
  KEAP1 WILD-TYPE 119   7  12
D7V6, multiclass
    clus
vv   KEAP1 MUTATED KEAP1 WILD-TYPE
  M0            24             119
  M1             2               7
  MX             6              12
D7V7, binary
                 cls
clus               0  1
  KEAP1 MUTATED   17 15
  KEAP1 WILD-TYPE 76 64
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KEAP1 MUTATED     17   15
  KEAP1 WILD-TYPE   76   64
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  FEMALE            17              76
  MALE              15              64
D7V8, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  KEAP1 MUTATED                            0                                 6
  KEAP1 WILD-TYPE                          2                                33
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  KEAP1 MUTATED                                                   22
  KEAP1 WILD-TYPE                                                 93
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  KEAP1 MUTATED                                            0
  KEAP1 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  KEAP1 MUTATED                                               0
  KEAP1 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  KEAP1 MUTATED                                1
  KEAP1 WILD-TYPE                              1
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  KEAP1 MUTATED                                    0
  KEAP1 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  KEAP1 MUTATED                              0                             1
  KEAP1 WILD-TYPE                            2                             3
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  KEAP1 MUTATED                                               0
  KEAP1 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  KEAP1 MUTATED                              2
  KEAP1 WILD-TYPE                            0
D7V9, multiclass
D7V10, binary
                 cls
clus                0   1
  KEAP1 MUTATED     3  29
  KEAP1 WILD-TYPE  11 129
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KEAP1 MUTATED      3   29
  KEAP1 WILD-TYPE   11  129
     clus
vv    KEAP1 MUTATED KEAP1 WILD-TYPE
  NO              3              11
  YES            29             129
D7V11, continuous
D7V12, continuous
                 vv
clus              R0 R1 R2 RX
  KEAP1 MUTATED   22  1  0  2
  KEAP1 WILD-TYPE 93  5  4  7
D7V13, multiclass
    clus
vv   KEAP1 MUTATED KEAP1 WILD-TYPE
  R0            22              93
  R1             1               5
  R2             0               4
  RX             2               7

Clustering(8) Variable = CRIPAK MUTATION ANALYSIS
D8V1, survival
                  sevent
clus2               0  1
  CRIPAK MUTATED    6  3
  CRIPAK WILD-TYPE 93 53
  CRIPAK MUTATED CRIPAK WILD-TYPE 
               9              146 
  CRIPAK MUTATED CRIPAK WILD-TYPE 
               3               53 
$`CRIPAK MUTATED`
TCGA-05-4396 TCGA-05-4403 TCGA-05-5425 TCGA-05-5715 TCGA-44-2668 TCGA-44-3396 
        9.96        19.00        28.96         2.04         8.09        37.15 
TCGA-44-6148 TCGA-50-6594 TCGA-64-5779 
       11.90        12.16        28.41 

$`CRIPAK WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02        15.02 
TCGA-05-5423 TCGA-05-5428 TCGA-05-5429 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        4.96        22.03         0.99         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        97.74       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61        14.73        21.93        46.98 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        44.94        24.36        42.08        42.77         3.19 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
       38.24        23.51         6.21        23.74        13.71        12.59 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6774 TCGA-44-6775 
       13.38        10.78         9.93        27.78         5.42        12.16 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46         5.16        55.89        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       29.26        17.13        20.48        71.47        70.55        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81        31.04        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12        18.64 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
       29.00        25.12        22.55        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       11.05         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        87.98         2.04        42.90 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       51.25        28.44         0.99        20.02        18.84        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
       12.66         5.69         4.60        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        26.27        15.35         4.27         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        5.39         1.25        12.36        10.62        41.33        10.16 
TCGA-91-6835 TCGA-91-6836 
        2.60        13.71 

  CRIPAK MUTATED CRIPAK WILD-TYPE 
            2.04             0.07 
  CRIPAK MUTATED CRIPAK WILD-TYPE 
           37.15           120.79 
  CRIPAK MUTATED CRIPAK WILD-TYPE 
           12.16            21.70 
[1] "2.0 - 37.1 (12.2)"  "0.1 - 120.8 (21.7)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
  "CRIPAK MUTATED"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
  "CRIPAK MUTATED" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
  "CRIPAK MUTATED" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
  "CRIPAK MUTATED"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
  "CRIPAK MUTATED" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
  "CRIPAK MUTATED" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
  "CRIPAK MUTATED"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
  "CRIPAK MUTATED" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE"   "CRIPAK MUTATED" "CRIPAK WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
  "CRIPAK MUTATED" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
[1] "hr=" "1.4"
D8V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  CRIPAK MUTATED          1        6         0         1          3          1
  CRIPAK WILD-TYPE       36       47        11        22         30          5
                  vv
clus               STAGE IV
  CRIPAK MUTATED          0
  CRIPAK WILD-TYPE        9
D8V3, multiclass
                  vv
clus                T1  T2  T3  T4
  CRIPAK MUTATED     1   9   1   1
  CRIPAK WILD-TYPE  40 100  13   7
D8V4, multiclass
    clus
vv   CRIPAK MUTATED CRIPAK WILD-TYPE
  T1              1               40
  T2              9              100
  T3              1               13
  T4              1                7
                  vv
clus               N0 N1 N2+N3
  CRIPAK MUTATED    7  2     3
  CRIPAK WILD-TYPE 88 35    32
D8V5, multiclass
       clus
vv      CRIPAK MUTATED CRIPAK WILD-TYPE
  N0                 7               88
  N1                 2               35
  N2+N3              3               32
                  vv
clus                M0  M1  MX
  CRIPAK MUTATED    12   0   0
  CRIPAK WILD-TYPE 131   9  18
D8V6, multiclass
    clus
vv   CRIPAK MUTATED CRIPAK WILD-TYPE
  M0             12              131
  M1              0                9
  MX              0               18
D8V7, binary
                  cls
clus                0  1
  CRIPAK MUTATED    4  8
  CRIPAK WILD-TYPE 89 71
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CRIPAK MUTATED      4    8
  CRIPAK WILD-TYPE   89   71
        clus
vv       CRIPAK MUTATED CRIPAK WILD-TYPE
  FEMALE              4               89
  MALE                8               71
D8V8, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  CRIPAK MUTATED                            1                                 4
  CRIPAK WILD-TYPE                          1                                35
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CRIPAK MUTATED                                                    5
  CRIPAK WILD-TYPE                                                110
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  CRIPAK MUTATED                                            0
  CRIPAK WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  CRIPAK MUTATED                                               0
  CRIPAK WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  CRIPAK MUTATED                                0
  CRIPAK WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  CRIPAK MUTATED                                    0
  CRIPAK WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  CRIPAK MUTATED                              1                             0
  CRIPAK WILD-TYPE                            1                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  CRIPAK MUTATED                                               1
  CRIPAK WILD-TYPE                                             0
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  CRIPAK MUTATED                              0
  CRIPAK WILD-TYPE                            2
D8V9, multiclass
D8V10, binary
                  cls
clus                 0   1
  CRIPAK MUTATED     1  11
  CRIPAK WILD-TYPE  13 147
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CRIPAK MUTATED      1   11
  CRIPAK WILD-TYPE   13  147
     clus
vv    CRIPAK MUTATED CRIPAK WILD-TYPE
  NO               1               13
  YES             11              147
D8V11, continuous
D8V12, continuous
                  vv
clus                R0  R1  R2  RX
  CRIPAK MUTATED    10   0   0   1
  CRIPAK WILD-TYPE 105   6   4   8
D8V13, multiclass
    clus
vv   CRIPAK MUTATED CRIPAK WILD-TYPE
  R0             10              105
  R1              0                6
  R2              0                4
  RX              1                8

Clustering(9) Variable = RBM10 MUTATION ANALYSIS
D9V1, survival
                 sevent
clus2              0  1
  RBM10 MUTATED    7  4
  RBM10 WILD-TYPE 92 52
  RBM10 MUTATED RBM10 WILD-TYPE 
             11             144 
  RBM10 MUTATED RBM10 WILD-TYPE 
              4              52 
$`RBM10 MUTATED`
TCGA-05-4403 TCGA-05-4418 TCGA-05-4424 TCGA-35-3615 TCGA-44-2655 TCGA-44-4112 
       19.00         8.98        30.02         0.46        21.93        23.74 
TCGA-49-4494 TCGA-64-1676 TCGA-64-5775 TCGA-67-3770 TCGA-91-6828 
       35.54        56.81         2.04         0.99        10.62 

$`RBM10 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 
        9.96        24.03        47.05         8.02        20.05         2.96 
TCGA-05-4417 TCGA-05-4420 TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
       14.93        29.95        12.00        21.99        26.01        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02        15.02         4.96 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-4122 TCGA-35-4123 
       28.96        22.03         0.99         2.04         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        97.74       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2656 TCGA-44-2657 
       35.28        11.64        44.61        14.73        46.98        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       44.94        24.36        42.08        42.77         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-5643 TCGA-44-5645 
       37.15        38.24        23.51         6.21        13.71        12.59 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
       13.38        10.78         9.93        27.78        11.90         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
       12.16        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.11        28.57        12.66        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46         5.16        55.89        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       29.26        17.13        20.48        71.47        70.55        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81        31.04        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12        18.64 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
       29.00        25.12        22.55        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 
       20.65        39.09        37.02        87.98        42.90        28.41 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       51.25        28.44        20.02        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        5.69         4.60        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        26.27        15.35         4.27         1.32         5.39 
TCGA-73-4677 TCGA-86-6562 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25        12.36        41.33        10.16         2.60        13.71 

  RBM10 MUTATED RBM10 WILD-TYPE 
           0.46            0.07 
  RBM10 MUTATED RBM10 WILD-TYPE 
          56.81          120.79 
  RBM10 MUTATED RBM10 WILD-TYPE 
          19.00           21.06 
[1] "0.5 - 56.8 (19.0)"  "0.1 - 120.8 (21.1)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
  "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
  "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
  "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE"   "RBM10 MUTATED" "RBM10 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"RBM10 WILD-TYPE" "RBM10 WILD-TYPE" "RBM10 WILD-TYPE" 
[1] "hr=" "1.3"
D9V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  RBM10 MUTATED          4        3         0         1          3          1
  RBM10 WILD-TYPE       33       50        11        22         30          5
                 vv
clus              STAGE IV
  RBM10 MUTATED          0
  RBM10 WILD-TYPE        9
D9V3, multiclass
                 vv
clus               T1  T2  T3  T4
  RBM10 MUTATED     4   3   3   2
  RBM10 WILD-TYPE  37 106  11   6
D9V4, multiclass
    clus
vv   RBM10 MUTATED RBM10 WILD-TYPE
  T1             4              37
  T2             3             106
  T3             3              11
  T4             2               6
                 vv
clus              N0 N1 N2+N3
  RBM10 MUTATED    9  0     3
  RBM10 WILD-TYPE 86 37    32
D9V5, multiclass
       clus
vv      RBM10 MUTATED RBM10 WILD-TYPE
  N0                9              86
  N1                0              37
  N2+N3             3              32
                 vv
clus               M0  M1  MX
  RBM10 MUTATED    12   0   0
  RBM10 WILD-TYPE 131   9  18
D9V6, multiclass
    clus
vv   RBM10 MUTATED RBM10 WILD-TYPE
  M0            12             131
  M1             0               9
  MX             0              18
D9V7, binary
                 cls
clus               0  1
  RBM10 MUTATED    3  9
  RBM10 WILD-TYPE 90 70
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RBM10 MUTATED      3    9
  RBM10 WILD-TYPE   90   70
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  FEMALE             3              90
  MALE               9              70
D9V8, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  RBM10 MUTATED                            0                                 4
  RBM10 WILD-TYPE                          2                                35
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  RBM10 MUTATED                                                    8
  RBM10 WILD-TYPE                                                107
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  RBM10 MUTATED                                            0
  RBM10 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  RBM10 MUTATED                                               0
  RBM10 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  RBM10 MUTATED                                0
  RBM10 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  RBM10 MUTATED                                    0
  RBM10 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  RBM10 MUTATED                              0                             0
  RBM10 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  RBM10 MUTATED                                               0
  RBM10 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  RBM10 MUTATED                              0
  RBM10 WILD-TYPE                            2
D9V9, multiclass
D9V10, binary
                 cls
clus                0   1
  RBM10 MUTATED     0  12
  RBM10 WILD-TYPE  14 146
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RBM10 MUTATED      0   12
  RBM10 WILD-TYPE   14  146
     clus
vv    RBM10 MUTATED RBM10 WILD-TYPE
  NO              0              14
  YES            12             146
D9V11, continuous
D9V12, continuous
                 vv
clus               R0  R1  R2  RX
  RBM10 MUTATED    11   1   0   0
  RBM10 WILD-TYPE 104   5   4   9
D9V13, multiclass
    clus
vv   RBM10 MUTATED RBM10 WILD-TYPE
  R0            11             104
  R1             1               5
  R2             0               4
  RX             0               9

Clustering(10) Variable = NF1 MUTATION ANALYSIS
D10V1, survival
               sevent
clus2            0  1
  NF1 MUTATED    9 10
  NF1 WILD-TYPE 90 46
  NF1 MUTATED NF1 WILD-TYPE 
           19           136 
  NF1 MUTATED NF1 WILD-TYPE 
           10            46 
$`NF1 MUTATED`
TCGA-05-4424 TCGA-38-4629 TCGA-38-4631 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       30.02        28.37        11.64        46.98        13.15        44.94 
TCGA-44-3918 TCGA-44-6144 TCGA-44-6775 TCGA-49-4488 TCGA-50-5045 TCGA-50-5068 
       23.51        13.38        12.16        28.57        71.47        49.28 
TCGA-50-5072 TCGA-50-5946 TCGA-50-6593 TCGA-55-1592 TCGA-73-4658 TCGA-73-4676 
        8.05        22.55        11.05        23.05        52.57         5.39 
TCGA-91-6829 
       41.33 

$`NF1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4425 
        2.96        14.93         8.98        29.95        12.00        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 
       15.02         4.96        28.96        22.03         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        97.74       120.79 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       37.71        49.02        35.28        44.61        14.73        21.93 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
       24.36        42.08        42.77         3.19         8.09        37.15 
TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6145 
       38.24         6.21        23.74        13.71        12.59        10.78 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6776 TCGA-44-6777 
        9.93        27.78        11.90         5.42        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 
       36.49        16.41        76.21        28.11        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46         5.16 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       55.89        15.02        12.13        29.26        17.13        20.48 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5930 TCGA-50-5931 
       70.55        14.96        25.81        31.04         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12        18.64 
TCGA-50-5942 TCGA-50-5944 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6594 
       29.00        25.12        42.31         3.88        25.51        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
        6.21        33.37        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        87.98         2.04        42.90        28.41        51.25 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       28.44         0.99        20.02        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4659 TCGA-73-4662 
        5.69         4.60        13.87         2.01        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4677 TCGA-86-6562 
       26.27        15.35         4.27         1.32         1.25        12.36 
TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       10.62        10.16         2.60        13.71 

  NF1 MUTATED NF1 WILD-TYPE 
         5.39          0.07 
  NF1 MUTATED NF1 WILD-TYPE 
        71.47        120.79 
  NF1 MUTATED NF1 WILD-TYPE 
       23.510        20.035 
[1] "5.4 - 71.5 (23.5)"  "0.1 - 120.8 (20.0)"
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428    TCGA-05-5429 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
  "NF1 MUTATED"   "NF1 MUTATED"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
  "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
  "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED"   "NF1 MUTATED" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
  "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
  "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-86-6562 
"NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-91-6828    TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428    TCGA-05-5429 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
  "NF1 MUTATED"   "NF1 MUTATED"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
  "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
  "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED"   "NF1 MUTATED" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
  "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
  "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-86-6562 
"NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-91-6828    TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428    TCGA-05-5429 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
  "NF1 MUTATED"   "NF1 MUTATED"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
  "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
  "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED"   "NF1 MUTATED" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
  "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
  "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-86-6562 
"NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-91-6828    TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
[1] "hr=" "1.3"
D10V2, continuous
               vv
clus            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  NF1 MUTATED          6        7         1         5          2          0
  NF1 WILD-TYPE       31       46        10        18         31          6
               vv
clus            STAGE IV
  NF1 MUTATED          0
  NF1 WILD-TYPE        9
D10V3, multiclass
               vv
clus            T1 T2 T3 T4
  NF1 MUTATED    6 12  3  0
  NF1 WILD-TYPE 35 97 11  8
D10V4, multiclass
    clus
vv   NF1 MUTATED NF1 WILD-TYPE
  T1           6            35
  T2          12            97
  T3           3            11
  T4           0             8
               vv
clus            N0 N1 N2+N3
  NF1 MUTATED   14  4     2
  NF1 WILD-TYPE 81 33    33
D10V5, multiclass
       clus
vv      NF1 MUTATED NF1 WILD-TYPE
  N0             14            81
  N1              4            33
  N2+N3           2            33
               vv
clus             M0  M1  MX
  NF1 MUTATED    15   0   6
  NF1 WILD-TYPE 128   9  12
D10V6, multiclass
    clus
vv   NF1 MUTATED NF1 WILD-TYPE
  M0          15           128
  M1           0             9
  MX           6            12
D10V7, binary
               cls
clus             0  1
  NF1 MUTATED   12  9
  NF1 WILD-TYPE 81 70
[1] "tbl2"
               cls
clus            [,1] [,2]
  NF1 MUTATED     12    9
  NF1 WILD-TYPE   81   70
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  FEMALE          12            81
  MALE             9            70
D10V8, continuous
[1] "Remove cluster labels:" "NF1 MUTATED"           
clus
  NF1 MUTATED NF1 WILD-TYPE 
            1            11 
   TCGA-35-4122    TCGA-35-4123    TCGA-35-5375    TCGA-64-1677    TCGA-64-5778 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-71-6725    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-75-5122 
"NF1 WILD-TYPE" 
               vv
clus            LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  NF1 MUTATED                            0                                 3
  NF1 WILD-TYPE                          2                                36
               vv
clus            LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  NF1 MUTATED                                                   17
  NF1 WILD-TYPE                                                 98
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  NF1 MUTATED                                            0
  NF1 WILD-TYPE                                          1
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  NF1 MUTATED                                               1
  NF1 WILD-TYPE                                             1
               vv
clus            LUNG CLEAR CELL ADENOCARCINOMA
  NF1 MUTATED                                0
  NF1 WILD-TYPE                              2
               vv
clus            LUNG MICROPAPILLARY ADENOCARCINOMA LUNG MUCINOUS ADENOCARCINOMA
  NF1 MUTATED                                    0                            0
  NF1 WILD-TYPE                                  2                            2
               vv
clus            LUNG PAPILLARY ADENOCARCINOMA
  NF1 MUTATED                               0
  NF1 WILD-TYPE                             4
               vv
clus            LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  NF1 MUTATED                                               0
  NF1 WILD-TYPE                                             1
               vv
clus            MUCINOUS (COLLOID) CARCINOMA
  NF1 MUTATED                              0
  NF1 WILD-TYPE                            2
D10V9, multiclass
D10V10, binary
               cls
clus              0   1
  NF1 MUTATED     3  18
  NF1 WILD-TYPE  11 140
[1] "tbl2"
               cls
clus            [,1] [,2]
  NF1 MUTATED      3   18
  NF1 WILD-TYPE   11  140
     clus
vv    NF1 MUTATED NF1 WILD-TYPE
  NO            3            11
  YES          18           140
D10V11, continuous
D10V12, continuous
               vv
clus             R0  R1  R2  RX
  NF1 MUTATED    13   1   0   2
  NF1 WILD-TYPE 102   5   4   7
D10V13, multiclass
    clus
vv   NF1 MUTATED NF1 WILD-TYPE
  R0          13           102
  R1           1             5
  R2           0             4
  RX           2             7

Clustering(11) Variable = GPR112 MUTATION ANALYSIS
D11V1, survival
                  sevent
clus2               0  1
  GPR112 MUTATED   19 10
  GPR112 WILD-TYPE 80 46
  GPR112 MUTATED GPR112 WILD-TYPE 
              29              126 
  GPR112 MUTATED GPR112 WILD-TYPE 
              10               46 
$`GPR112 MUTATED`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
        3.98        19.92        45.01        37.02         9.96        24.03 
TCGA-05-4405 TCGA-05-4420 TCGA-05-4424 TCGA-05-4427 TCGA-05-4432 TCGA-35-5375 
       20.05        29.95        30.02        26.01        25.02         8.68 
TCGA-38-4631 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-6777 TCGA-49-4505 
       11.64        46.98        13.15        44.94        32.45        14.07 
TCGA-49-6744 TCGA-50-5045 TCGA-50-5049 TCGA-50-5939 TCGA-50-6590 TCGA-64-1676 
       29.26        71.47        70.55        15.12        42.31        56.81 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-73-4670 TCGA-73-4676 
        2.04        42.90        51.25         4.27         5.39 

$`GPR112 WILD-TYPE`
TCGA-05-4249 TCGA-05-4384 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4415 
       50.07        14.01        47.05         8.02        19.00         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 TCGA-05-4430 
       14.93         8.98        12.00        21.99        26.01        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 
       24.00        15.02        15.02         4.96        28.96        22.03 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 
        0.99         2.04         0.46         7.36         5.95        97.74 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 
      120.79        37.71        49.02        28.37        35.28        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       14.73        21.93        24.36        42.08        42.77         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        37.15        38.24        23.51         6.21        23.74 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       13.71        12.59        13.38        10.78         9.93        27.78 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 
       11.90         5.42        12.16        63.72        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46         5.16        55.89        15.02 
TCGA-49-6743 TCGA-49-6745 TCGA-50-5044 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       12.13        17.13        20.48        14.96        25.81        31.04 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
       21.47         8.45        18.64        29.00        25.12        22.55 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
       32.61         0.79        20.65        39.09        37.02        87.98 
TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       28.41        28.44         0.99        20.02        18.84        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
       12.66         5.69         4.60        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4675 TCGA-73-4677 
       23.38        29.95        26.27        15.35         1.32         1.25 
TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       12.36        10.62        41.33        10.16         2.60        13.71 

  GPR112 MUTATED GPR112 WILD-TYPE 
            2.04             0.07 
  GPR112 MUTATED GPR112 WILD-TYPE 
           71.47           120.79 
  GPR112 MUTATED GPR112 WILD-TYPE 
           26.01            19.51 
[1] "2.0 - 71.5 (26.0)"  "0.1 - 120.8 (19.5)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GPR112 WILD-TYPE"   "GPR112 MUTATED"   "GPR112 MUTATED" "GPR112 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
  "GPR112 MUTATED"   "GPR112 MUTATED"   "GPR112 MUTATED"   "GPR112 MUTATED" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE"   "GPR112 MUTATED" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE"   "GPR112 MUTATED" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"GPR112 WILD-TYPE"   "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "GPR112 MUTATED" "GPR112 WILD-TYPE"   "GPR112 MUTATED" "GPR112 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE"   "GPR112 MUTATED" "GPR112 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"GPR112 WILD-TYPE"   "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"GPR112 WILD-TYPE"   "GPR112 MUTATED"   "GPR112 MUTATED"   "GPR112 MUTATED" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
  "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"GPR112 WILD-TYPE"   "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"GPR112 WILD-TYPE"   "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
  "GPR112 MUTATED"   "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"GPR112 WILD-TYPE"   "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE"   "GPR112 MUTATED" "GPR112 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"GPR112 WILD-TYPE"   "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE"   "GPR112 MUTATED"   "GPR112 MUTATED" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"GPR112 WILD-TYPE"   "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"GPR112 WILD-TYPE"   "GPR112 MUTATED" "GPR112 WILD-TYPE"   "GPR112 MUTATED" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GPR112 WILD-TYPE"   "GPR112 MUTATED"   "GPR112 MUTATED" "GPR112 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
  "GPR112 MUTATED"   "GPR112 MUTATED"   "GPR112 MUTATED"   "GPR112 MUTATED" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE"   "GPR112 MUTATED" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE"   "GPR112 MUTATED" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"GPR112 WILD-TYPE"   "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "GPR112 MUTATED" "GPR112 WILD-TYPE"   "GPR112 MUTATED" "GPR112 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE"   "GPR112 MUTATED" "GPR112 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"GPR112 WILD-TYPE"   "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"GPR112 WILD-TYPE"   "GPR112 MUTATED"   "GPR112 MUTATED"   "GPR112 MUTATED" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
  "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"GPR112 WILD-TYPE"   "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"GPR112 WILD-TYPE"   "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
  "GPR112 MUTATED"   "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"GPR112 WILD-TYPE"   "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE"   "GPR112 MUTATED" "GPR112 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"GPR112 WILD-TYPE"   "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE"   "GPR112 MUTATED"   "GPR112 MUTATED" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"GPR112 WILD-TYPE"   "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"GPR112 WILD-TYPE"   "GPR112 MUTATED" "GPR112 WILD-TYPE"   "GPR112 MUTATED" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GPR112 WILD-TYPE"   "GPR112 MUTATED"   "GPR112 MUTATED" "GPR112 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
  "GPR112 MUTATED"   "GPR112 MUTATED"   "GPR112 MUTATED"   "GPR112 MUTATED" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE"   "GPR112 MUTATED" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE"   "GPR112 MUTATED" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"GPR112 WILD-TYPE"   "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "GPR112 MUTATED" "GPR112 WILD-TYPE"   "GPR112 MUTATED" "GPR112 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE"   "GPR112 MUTATED" "GPR112 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"GPR112 WILD-TYPE"   "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"GPR112 WILD-TYPE"   "GPR112 MUTATED"   "GPR112 MUTATED"   "GPR112 MUTATED" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
  "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"GPR112 WILD-TYPE"   "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"GPR112 WILD-TYPE"   "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
  "GPR112 MUTATED"   "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"GPR112 WILD-TYPE"   "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE"   "GPR112 MUTATED" "GPR112 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"GPR112 WILD-TYPE"   "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE"   "GPR112 MUTATED"   "GPR112 MUTATED" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"GPR112 WILD-TYPE"   "GPR112 MUTATED" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"GPR112 WILD-TYPE"   "GPR112 MUTATED" "GPR112 WILD-TYPE"   "GPR112 MUTATED" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"GPR112 WILD-TYPE" "GPR112 WILD-TYPE" "GPR112 WILD-TYPE" 
[1] "hr=" "1.3"
D11V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  GPR112 MUTATED          4       15         2         7          4          1
  GPR112 WILD-TYPE       33       38         9        16         29          5
                  vv
clus               STAGE IV
  GPR112 MUTATED          2
  GPR112 WILD-TYPE        7
D11V3, multiclass
                  vv
clus               T1 T2 T3 T4
  GPR112 MUTATED    3 25  5  2
  GPR112 WILD-TYPE 38 84  9  6
D11V4, multiclass
    clus
vv   GPR112 MUTATED GPR112 WILD-TYPE
  T1              3               38
  T2             25               84
  T3              5                9
  T4              2                6
                  vv
clus               N0 N1 N2+N3
  GPR112 MUTATED   20 10     3
  GPR112 WILD-TYPE 75 27    32
D11V5, multiclass
       clus
vv      GPR112 MUTATED GPR112 WILD-TYPE
  N0                20               75
  N1                10               27
  N2+N3              3               32
                  vv
clus                M0  M1  MX
  GPR112 MUTATED    30   2   3
  GPR112 WILD-TYPE 113   7  15
D11V6, multiclass
    clus
vv   GPR112 MUTATED GPR112 WILD-TYPE
  M0             30              113
  M1              2                7
  MX              3               15
D11V7, binary
                  cls
clus                0  1
  GPR112 MUTATED   17 18
  GPR112 WILD-TYPE 76 61
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GPR112 MUTATED     17   18
  GPR112 WILD-TYPE   76   61
        clus
vv       GPR112 MUTATED GPR112 WILD-TYPE
  FEMALE             17               76
  MALE               18               61
D11V8, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  GPR112 MUTATED                            0                                14
  GPR112 WILD-TYPE                          2                                25
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  GPR112 MUTATED                                                   19
  GPR112 WILD-TYPE                                                 96
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  GPR112 MUTATED                                            0
  GPR112 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  GPR112 MUTATED                                               1
  GPR112 WILD-TYPE                                             1
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  GPR112 MUTATED                                0
  GPR112 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  GPR112 MUTATED                                    0
  GPR112 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  GPR112 MUTATED                              0                             1
  GPR112 WILD-TYPE                            2                             3
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  GPR112 MUTATED                                               0
  GPR112 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  GPR112 MUTATED                              0
  GPR112 WILD-TYPE                            2
D11V9, multiclass
D11V10, binary
                  cls
clus                 0   1
  GPR112 MUTATED     4  31
  GPR112 WILD-TYPE  10 127
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GPR112 MUTATED      4   31
  GPR112 WILD-TYPE   10  127
     clus
vv    GPR112 MUTATED GPR112 WILD-TYPE
  NO               4               10
  YES             31              127
D11V11, continuous
D11V12, continuous
                  vv
clus               R0 R1 R2 RX
  GPR112 MUTATED   24  1  2  2
  GPR112 WILD-TYPE 91  5  2  7
D11V13, multiclass
    clus
vv   GPR112 MUTATED GPR112 WILD-TYPE
  R0             24               91
  R1              1                5
  R2              2                2
  RX              2                7

Clustering(12) Variable = FLG MUTATION ANALYSIS
D12V1, survival
               sevent
clus2            0  1
  FLG MUTATED   29 12
  FLG WILD-TYPE 70 44
  FLG MUTATED FLG WILD-TYPE 
           41           114 
  FLG MUTATED FLG WILD-TYPE 
           12            44 
$`FLG MUTATED`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4396 TCGA-05-4398 TCGA-05-4403 TCGA-05-4420 
       50.07        19.92         9.96        47.05        19.00        29.95 
TCGA-05-4424 TCGA-05-5428 TCGA-05-5715 TCGA-38-4626 TCGA-44-2656 TCGA-44-2657 
       30.02        22.03         2.04       120.79        46.98        13.15 
TCGA-44-2659 TCGA-44-2668 TCGA-44-3918 TCGA-44-4112 TCGA-44-6147 TCGA-44-6774 
       44.94         8.09        23.51        23.74        27.78         5.42 
TCGA-44-6777 TCGA-44-6779 TCGA-49-4487 TCGA-49-4514 TCGA-50-5045 TCGA-50-5049 
       32.45        16.41        28.11        55.89        71.47        70.55 
TCGA-50-5933 TCGA-50-5941 TCGA-50-6590 TCGA-50-6593 TCGA-55-1596 TCGA-55-5899 
       77.88        18.64        42.31        11.05        45.17         2.86 
TCGA-64-1676 TCGA-64-1678 TCGA-64-5779 TCGA-64-5781 TCGA-67-3771 TCGA-73-4659 
       56.81        39.09        28.41        51.25        20.02        23.38 
TCGA-73-4662 TCGA-73-4670 TCGA-91-6828 TCGA-91-6829 TCGA-91-6836 
       29.95         4.27        10.62        41.33        13.71 

$`FLG WILD-TYPE`
TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4397 TCGA-05-4402 
        3.98        14.01        45.01        37.02        24.03         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4422 TCGA-05-4425 
       20.05         2.96        14.93         8.98        12.00        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-35-3615 TCGA-35-4122 
       15.02         4.96        28.96         0.99         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        5.95         8.68        97.74        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2661 
       35.28        11.64        44.61        14.73        21.93        24.36 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 
       42.08        42.77         3.19        37.15        38.24         6.21 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 
       13.71        12.59        13.38        10.78         9.93        11.90 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 TCGA-49-4486 TCGA-49-4488 TCGA-49-4490 
       12.16        63.72        36.49        76.21        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
        5.16        15.02        12.13        29.26        17.13        20.48 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81        31.04        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 
        8.78        35.87        21.47         8.45        15.12        29.00 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 
       25.12        22.55         3.88        25.51        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-6543 TCGA-55-6642 
       33.37        23.05        38.73        48.62         0.07        32.61 
TCGA-55-6712 TCGA-64-1677 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
        0.79        20.65        37.02        87.98         2.04        42.90 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
       28.44         0.99        18.84        14.04        12.66         5.69 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4666 TCGA-73-4668 
        4.60        13.87         2.01        52.57        26.27        15.35 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6831 TCGA-91-6835 
        1.32         5.39         1.25        12.36        10.16         2.60 

  FLG MUTATED FLG WILD-TYPE 
         2.04          0.07 
  FLG MUTATED FLG WILD-TYPE 
       120.79         97.74 
  FLG MUTATED FLG WILD-TYPE 
       28.110        15.235 
[1] "2.0 - 120.8 (28.1)" "0.1 - 97.7 (15.2)" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
  "FLG MUTATED" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
  "FLG MUTATED" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428    TCGA-05-5429 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
  "FLG MUTATED"   "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
  "FLG MUTATED" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
  "FLG MUTATED" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED"   "FLG MUTATED" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"FLG WILD-TYPE"   "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED"   "FLG MUTATED" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"FLG WILD-TYPE"   "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-86-6562 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-91-6828    TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
  "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
  "FLG MUTATED" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
  "FLG MUTATED" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428    TCGA-05-5429 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
  "FLG MUTATED"   "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
  "FLG MUTATED" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
  "FLG MUTATED" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED"   "FLG MUTATED" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"FLG WILD-TYPE"   "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED"   "FLG MUTATED" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"FLG WILD-TYPE"   "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-86-6562 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-91-6828    TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
  "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
  "FLG MUTATED" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
  "FLG MUTATED" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428    TCGA-05-5429 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
  "FLG MUTATED"   "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
  "FLG MUTATED" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
  "FLG MUTATED" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED"   "FLG MUTATED" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"FLG WILD-TYPE"   "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED"   "FLG MUTATED" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"FLG WILD-TYPE"   "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-86-6562 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-91-6828    TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
  "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" 
[1] "hr=" "2.1"
D12V2, continuous
               vv
clus            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  FLG MUTATED         11       16         3         4          6          3
  FLG WILD-TYPE       26       37         8        19         27          3
               vv
clus            STAGE IV
  FLG MUTATED          1
  FLG WILD-TYPE        8
D12V3, multiclass
               vv
clus            T1 T2 T3 T4
  FLG MUTATED   13 26  2  3
  FLG WILD-TYPE 28 83 12  5
D12V4, multiclass
    clus
vv   FLG MUTATED FLG WILD-TYPE
  T1          13            28
  T2          26            83
  T3           2            12
  T4           3             5
               vv
clus            N0 N1 N2+N3
  FLG MUTATED   26  7     8
  FLG WILD-TYPE 69 30    27
D12V5, multiclass
       clus
vv      FLG MUTATED FLG WILD-TYPE
  N0             26            69
  N1              7            30
  N2+N3           8            27
               vv
clus             M0  M1  MX
  FLG MUTATED    39   1   4
  FLG WILD-TYPE 104   8  14
D12V6, multiclass
    clus
vv   FLG MUTATED FLG WILD-TYPE
  M0          39           104
  M1           1             8
  MX           4            14
D12V7, binary
               cls
clus             0  1
  FLG MUTATED   25 19
  FLG WILD-TYPE 68 60
[1] "tbl2"
               cls
clus            [,1] [,2]
  FLG MUTATED     25   19
  FLG WILD-TYPE   68   60
        clus
vv       FLG MUTATED FLG WILD-TYPE
  FEMALE          25            68
  MALE            19            60
D12V8, continuous
[1] "Remove cluster labels:" "FLG MUTATED"           
clus
  FLG MUTATED FLG WILD-TYPE 
            2            10 
   TCGA-35-4122    TCGA-35-4123    TCGA-35-5375    TCGA-64-1677    TCGA-64-5778 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-71-6725    TCGA-73-4666    TCGA-73-4668    TCGA-73-4676    TCGA-75-5122 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
               vv
clus            LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  FLG MUTATED                            1                                11
  FLG WILD-TYPE                          1                                28
               vv
clus            LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  FLG MUTATED                                                   29
  FLG WILD-TYPE                                                 86
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  FLG MUTATED                                            0
  FLG WILD-TYPE                                          1
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  FLG MUTATED                                               1
  FLG WILD-TYPE                                             1
               vv
clus            LUNG CLEAR CELL ADENOCARCINOMA
  FLG MUTATED                                0
  FLG WILD-TYPE                              2
               vv
clus            LUNG MICROPAPILLARY ADENOCARCINOMA LUNG MUCINOUS ADENOCARCINOMA
  FLG MUTATED                                    0                            0
  FLG WILD-TYPE                                  2                            2
               vv
clus            LUNG PAPILLARY ADENOCARCINOMA
  FLG MUTATED                               2
  FLG WILD-TYPE                             2
               vv
clus            LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  FLG MUTATED                                               0
  FLG WILD-TYPE                                             1
               vv
clus            MUCINOUS (COLLOID) CARCINOMA
  FLG MUTATED                              0
  FLG WILD-TYPE                            2
D12V9, multiclass
D12V10, binary
               cls
clus              0   1
  FLG MUTATED     5  39
  FLG WILD-TYPE   9 119
[1] "tbl2"
               cls
clus            [,1] [,2]
  FLG MUTATED      5   39
  FLG WILD-TYPE    9  119
     clus
vv    FLG MUTATED FLG WILD-TYPE
  NO            5             9
  YES          39           119
D12V11, continuous
D12V12, continuous
               vv
clus            R0 R1 R2 RX
  FLG MUTATED   30  1  1  1
  FLG WILD-TYPE 85  5  3  8
D12V13, multiclass
    clus
vv   FLG MUTATED FLG WILD-TYPE
  R0          30            85
  R1           1             5
  R2           1             3
  RX           1             8

Clustering(13) Variable = SMARCA4 MUTATION ANALYSIS
D13V1, survival
                   sevent
clus2                0  1
  SMARCA4 MUTATED    8  4
  SMARCA4 WILD-TYPE 91 52
  SMARCA4 MUTATED SMARCA4 WILD-TYPE 
               12               143 
  SMARCA4 MUTATED SMARCA4 WILD-TYPE 
                4                52 
$`SMARCA4 MUTATED`
TCGA-05-4432 TCGA-05-5420 TCGA-35-5375 TCGA-38-4631 TCGA-44-2656 TCGA-49-6742 
       25.02        15.02         8.68        11.64        46.98        15.02 
TCGA-50-5072 TCGA-50-5936 TCGA-50-6592 TCGA-55-1596 TCGA-55-6543 TCGA-67-3771 
        8.05         8.45        25.51        45.17         0.07        20.02 

$`SMARCA4 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 
       21.99        26.01        26.01        25.02        24.00        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        4.96        28.96        22.03         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        7.36         5.95        97.74       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 
       28.37        35.28        44.61        14.73        21.93        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       44.94        24.36        42.08        42.77         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       37.15        38.24        23.51         6.21        23.74        13.71 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
       12.59        13.38        10.78         9.93        27.78        11.90 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42        12.16        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46         5.16        55.89 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        29.26        17.13        20.48        71.47        70.55 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5930 TCGA-50-5931 
       14.96        25.81        31.04        49.28         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       35.87        77.88        21.47        15.12        18.64        29.00 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 
       25.12        22.55        42.31         3.88        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 
        6.21        33.37        23.05        38.73        48.62         2.86 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       87.98         2.04        42.90        28.41        51.25        28.44 
TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        0.99        18.84        14.04        12.66         5.69         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        26.27 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 
       15.35         4.27         1.32         5.39         1.25        12.36 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       10.62        41.33        10.16         2.60        13.71 

  SMARCA4 MUTATED SMARCA4 WILD-TYPE 
             0.07              0.46 
  SMARCA4 MUTATED SMARCA4 WILD-TYPE 
            46.98            120.79 
  SMARCA4 MUTATED SMARCA4 WILD-TYPE 
            15.02             21.93 
[1] "0.1 - 47.0 (15.0)"  "0.5 - 120.8 (21.9)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
  "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
  "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
  "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
  "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
  "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
  "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
  "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
  "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
  "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
  "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
  "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE"   "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
  "SMARCA4 MUTATED" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
[1] "hr=" "1.3"
D13V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  SMARCA4 MUTATED          2        4         0         4          4          0
  SMARCA4 WILD-TYPE       35       49        11        19         29          6
                   vv
clus                STAGE IV
  SMARCA4 MUTATED          0
  SMARCA4 WILD-TYPE        9
D13V3, multiclass
                   vv
clus                T1 T2 T3 T4
  SMARCA4 MUTATED    2 11  1  0
  SMARCA4 WILD-TYPE 39 98 13  8
D13V4, multiclass
    clus
vv   SMARCA4 MUTATED SMARCA4 WILD-TYPE
  T1               2                39
  T2              11                98
  T3               1                13
  T4               0                 8
                   vv
clus                N0 N1 N2+N3
  SMARCA4 MUTATED    7  3     4
  SMARCA4 WILD-TYPE 88 34    31
D13V5, multiclass
       clus
vv      SMARCA4 MUTATED SMARCA4 WILD-TYPE
  N0                  7                88
  N1                  3                34
  N2+N3               4                31
                   vv
clus                 M0  M1  MX
  SMARCA4 MUTATED    12   0   2
  SMARCA4 WILD-TYPE 131   9  16
D13V6, multiclass
    clus
vv   SMARCA4 MUTATED SMARCA4 WILD-TYPE
  M0              12               131
  M1               0                 9
  MX               2                16
D13V7, binary
                   cls
clus                 0  1
  SMARCA4 MUTATED    5  9
  SMARCA4 WILD-TYPE 88 70
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SMARCA4 MUTATED      5    9
  SMARCA4 WILD-TYPE   88   70
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  FEMALE               5                88
  MALE                 9                70
D13V8, continuous
[1] "Remove cluster labels:" "SMARCA4 MUTATED"       
clus
  SMARCA4 MUTATED SMARCA4 WILD-TYPE 
                1                11 
       TCGA-35-4122        TCGA-35-4123        TCGA-64-1677        TCGA-64-5778 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4676        TCGA-75-5122 
"SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" "SMARCA4 WILD-TYPE" 
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  SMARCA4 MUTATED                            0
  SMARCA4 WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  SMARCA4 MUTATED                                   1
  SMARCA4 WILD-TYPE                                38
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SMARCA4 MUTATED                                                    9
  SMARCA4 WILD-TYPE                                                106
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  SMARCA4 MUTATED                                            1
  SMARCA4 WILD-TYPE                                          0
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  SMARCA4 MUTATED                                               0
  SMARCA4 WILD-TYPE                                             2
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  SMARCA4 MUTATED                                0
  SMARCA4 WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  SMARCA4 MUTATED                                    0
  SMARCA4 WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  SMARCA4 MUTATED                              0                             0
  SMARCA4 WILD-TYPE                            2                             4
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  SMARCA4 MUTATED                                               1
  SMARCA4 WILD-TYPE                                             0
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  SMARCA4 MUTATED                              2
  SMARCA4 WILD-TYPE                            0
D13V9, multiclass
D13V10, binary
                   cls
clus                  0   1
  SMARCA4 MUTATED     1  13
  SMARCA4 WILD-TYPE  13 145
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SMARCA4 MUTATED      1   13
  SMARCA4 WILD-TYPE   13  145
     clus
vv    SMARCA4 MUTATED SMARCA4 WILD-TYPE
  NO                1                13
  YES              13               145
D13V11, continuous
D13V12, continuous
                   vv
clus                 R0  R1  R2  RX
  SMARCA4 MUTATED     9   0   0   0
  SMARCA4 WILD-TYPE 106   6   4   9
D13V13, multiclass
    clus
vv   SMARCA4 MUTATED SMARCA4 WILD-TYPE
  R0               9               106
  R1               0                 6
  R2               0                 4
  RX               0                 9

Clustering(14) Variable = HRNR MUTATION ANALYSIS
D14V1, survival
                sevent
clus2             0  1
  HRNR MUTATED   13 11
  HRNR WILD-TYPE 86 45
  HRNR MUTATED HRNR WILD-TYPE 
            24            131 
  HRNR MUTATED HRNR WILD-TYPE 
            11             45 
$`HRNR MUTATED`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4396 TCGA-05-4398 TCGA-05-4415 TCGA-05-4417 
        3.98        19.92         9.96        47.05         2.96        14.93 
TCGA-05-4427 TCGA-35-4122 TCGA-38-4629 TCGA-44-2666 TCGA-44-3396 TCGA-44-3918 
       26.01         7.36        28.37         3.19        37.15        23.51 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-49-4487 TCGA-50-5051 TCGA-50-5930 
       12.16        63.72        32.45        28.11        14.96         9.27 
TCGA-64-5781 TCGA-67-6215 TCGA-73-4659 TCGA-73-4666 TCGA-91-6829 TCGA-91-6836 
       51.25         5.69        23.38        26.27        41.33        13.71 

$`HRNR WILD-TYPE`
TCGA-05-4249 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4397 TCGA-05-4402 
       50.07        14.01        45.01        37.02        24.03         8.02 
TCGA-05-4403 TCGA-05-4405 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
       19.00        20.05         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       21.99        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 
       15.02         4.96        28.96        22.03         0.99         2.04 
TCGA-35-3615 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        0.46         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       49.02        35.28        11.64        44.61        14.73        21.93 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       46.98        13.15        44.94        24.36        42.08        42.77 
TCGA-44-2668 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.09        38.24         6.21        23.74        13.71        12.59 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
       13.38        10.78         9.93        27.78        11.90         5.42 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       36.49        16.41        76.21        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46         5.16 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       55.89        15.02        12.13        29.26        17.13        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       71.47        70.55        25.81        31.04        49.28         8.05 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
       18.64        29.00        25.12        22.55        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        87.98 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
        2.04        42.90        28.41        28.44         0.99        20.02 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
       18.84        14.04        12.66         4.60        13.87         2.01 
TCGA-73-4658 TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       52.57        29.95        15.35         4.27         1.32         5.39 
TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 
        1.25        12.36        10.62        10.16         2.60 

  HRNR MUTATED HRNR WILD-TYPE 
          2.96           0.07 
  HRNR MUTATED HRNR WILD-TYPE 
         63.72         120.79 
  HRNR MUTATED HRNR WILD-TYPE 
         21.65          20.65 
[1] "3.0 - 63.7 (21.6)"  "0.1 - 120.8 (20.6)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"HRNR WILD-TYPE"   "HRNR MUTATED"   "HRNR MUTATED" "HRNR WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
  "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
  "HRNR MUTATED"   "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
  "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE"   "HRNR MUTATED" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED"   "HRNR MUTATED" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
  "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
  "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
  "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE"   "HRNR MUTATED" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"HRNR WILD-TYPE"   "HRNR MUTATED"   "HRNR MUTATED" "HRNR WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
  "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
  "HRNR MUTATED"   "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
  "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE"   "HRNR MUTATED" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED"   "HRNR MUTATED" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
  "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
  "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
  "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE"   "HRNR MUTATED" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"HRNR WILD-TYPE"   "HRNR MUTATED"   "HRNR MUTATED" "HRNR WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
  "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
  "HRNR MUTATED"   "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
  "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE"   "HRNR MUTATED" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED"   "HRNR MUTATED" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
  "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
  "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
  "HRNR MUTATED" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"HRNR WILD-TYPE"   "HRNR MUTATED" "HRNR WILD-TYPE"   "HRNR MUTATED" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"HRNR WILD-TYPE" "HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"HRNR WILD-TYPE" "HRNR WILD-TYPE"   "HRNR MUTATED" 
[1] "hr=" "1.5"
D14V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  HRNR MUTATED          4        9         0         2          5          4
  HRNR WILD-TYPE       33       44        11        21         28          2
                vv
clus             STAGE IV
  HRNR MUTATED          1
  HRNR WILD-TYPE        8
D14V3, multiclass
                vv
clus             T1 T2 T3 T4
  HRNR MUTATED    5 14  2  4
  HRNR WILD-TYPE 36 95 12  4
D14V4, multiclass
    clus
vv   HRNR MUTATED HRNR WILD-TYPE
  T1            5             36
  T2           14             95
  T3            2             12
  T4            4              4
                vv
clus             N0 N1 N2+N3
  HRNR MUTATED   14  3     7
  HRNR WILD-TYPE 81 34    28
D14V5, multiclass
       clus
vv      HRNR MUTATED HRNR WILD-TYPE
  N0              14             81
  N1               3             34
  N2+N3            7             28
                vv
clus              M0  M1  MX
  HRNR MUTATED    19   1   5
  HRNR WILD-TYPE 124   8  13
D14V6, multiclass
    clus
vv   HRNR MUTATED HRNR WILD-TYPE
  M0           19            124
  M1            1              8
  MX            5             13
D14V7, binary
                cls
clus              0  1
  HRNR MUTATED   15 10
  HRNR WILD-TYPE 78 69
[1] "tbl2"
                cls
clus             [,1] [,2]
  HRNR MUTATED     15   10
  HRNR WILD-TYPE   78   69
        clus
vv       HRNR MUTATED HRNR WILD-TYPE
  FEMALE           15             78
  MALE             10             69
D14V8, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  HRNR MUTATED                            0                                 9
  HRNR WILD-TYPE                          2                                30
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  HRNR MUTATED                                                   15
  HRNR WILD-TYPE                                                100
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  HRNR MUTATED                                            0
  HRNR WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  HRNR MUTATED                                               1
  HRNR WILD-TYPE                                             1
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  HRNR MUTATED                                0
  HRNR WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  HRNR MUTATED                                    0
  HRNR WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  HRNR MUTATED                              0                             0
  HRNR WILD-TYPE                            2                             4
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  HRNR MUTATED                                               0
  HRNR WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  HRNR MUTATED                              0
  HRNR WILD-TYPE                            2
D14V9, multiclass
D14V10, binary
                cls
clus               0   1
  HRNR MUTATED     3  22
  HRNR WILD-TYPE  11 136
[1] "tbl2"
                cls
clus             [,1] [,2]
  HRNR MUTATED      3   22
  HRNR WILD-TYPE   11  136
     clus
vv    HRNR MUTATED HRNR WILD-TYPE
  NO             3             11
  YES           22            136
D14V11, continuous
D14V12, continuous
                vv
clus             R0 R1 R2 RX
  HRNR MUTATED   19  0  1  1
  HRNR WILD-TYPE 96  6  3  8
D14V13, multiclass
    clus
vv   HRNR MUTATED HRNR WILD-TYPE
  R0           19             96
  R1            0              6
  R2            1              3
  RX            1              8

Clustering(15) Variable = MUC7 MUTATION ANALYSIS
D15V1, survival
                sevent
clus2             0  1
  MUC7 MUTATED   11  3
  MUC7 WILD-TYPE 88 53
  MUC7 MUTATED MUC7 WILD-TYPE 
            14            141 
  MUC7 MUTATED MUC7 WILD-TYPE 
             3             53 
$`MUC7 MUTATED`
TCGA-05-4382 TCGA-05-4390 TCGA-05-4424 TCGA-35-4122 TCGA-35-5375 TCGA-44-6778 
       19.92        37.02        30.02         7.36         8.68        36.49 
TCGA-49-4507 TCGA-49-6742 TCGA-50-6593 TCGA-55-1592 TCGA-55-5899 TCGA-64-5774 
        8.81        15.02        11.05        23.05         2.86        87.98 
TCGA-64-5781 TCGA-91-6828 
       51.25        10.62 

$`MUC7 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4396 TCGA-05-4397 
       50.07         3.98        14.01        45.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
        8.98        29.95        12.00        21.99        26.01        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02        15.02         4.96 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4123 
       28.96        22.03         0.99         2.04         0.46         5.95 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       97.74       120.79        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61        14.73        21.93        46.98        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       44.94        24.36        42.08        42.77         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       37.15        38.24        23.51         6.21        23.74        13.71 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
       12.59        13.38        10.78         9.93        27.78        11.90 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 TCGA-49-4486 
        5.42        12.16        63.72        32.45        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 
       32.84        29.46         5.16        55.89        12.13        29.26 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
       17.13        20.48        71.47        70.55        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       31.04        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12        18.64        29.00 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6594 
       25.12        22.55        42.31         3.88        25.51        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 
        6.21        33.37        38.73        48.62        45.17         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
        2.04        42.90        28.41        28.44         0.99        20.02 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
       18.84        14.04        12.66         5.69         4.60        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        26.27        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6829 
        4.27         1.32         5.39         1.25        12.36        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       10.16         2.60        13.71 

  MUC7 MUTATED MUC7 WILD-TYPE 
          2.86           0.07 
  MUC7 MUTATED MUC7 WILD-TYPE 
         87.98         120.79 
  MUC7 MUTATED MUC7 WILD-TYPE 
         17.47          21.47 
[1] "2.9 - 88.0 (17.5)"  "0.1 - 120.8 (21.5)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
  "MUC7 MUTATED" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
  "MUC7 MUTATED" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
  "MUC7 MUTATED" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE"   "MUC7 MUTATED" "MUC7 WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
[1] "hr=" "1.9"
D15V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  MUC7 MUTATED          5        4         0         3          3          0
  MUC7 WILD-TYPE       32       49        11        20         30          6
                vv
clus             STAGE IV
  MUC7 MUTATED          0
  MUC7 WILD-TYPE        9
D15V3, multiclass
                vv
clus              T1  T2  T3  T4
  MUC7 MUTATED     5   8   2   0
  MUC7 WILD-TYPE  36 101  12   8
D15V4, multiclass
    clus
vv   MUC7 MUTATED MUC7 WILD-TYPE
  T1            5             36
  T2            8            101
  T3            2             12
  T4            0              8
                vv
clus             N0 N1 N2+N3
  MUC7 MUTATED    9  4     2
  MUC7 WILD-TYPE 86 33    33
D15V5, multiclass
       clus
vv      MUC7 MUTATED MUC7 WILD-TYPE
  N0               9             86
  N1               4             33
  N2+N3            2             33
                vv
clus              M0  M1  MX
  MUC7 MUTATED    14   0   1
  MUC7 WILD-TYPE 129   9  17
D15V6, multiclass
    clus
vv   MUC7 MUTATED MUC7 WILD-TYPE
  M0           14            129
  M1            0              9
  MX            1             17
D15V7, binary
                cls
clus              0  1
  MUC7 MUTATED    4 11
  MUC7 WILD-TYPE 89 68
[1] "tbl2"
                cls
clus             [,1] [,2]
  MUC7 MUTATED      4   11
  MUC7 WILD-TYPE   89   68
        clus
vv       MUC7 MUTATED MUC7 WILD-TYPE
  FEMALE            4             89
  MALE             11             68
D15V8, continuous
[1] "Remove cluster labels:" "MUC7 MUTATED"          
clus
  MUC7 MUTATED MUC7 WILD-TYPE 
             2             10 
    TCGA-35-4123     TCGA-64-1677     TCGA-64-5778     TCGA-71-6725 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-73-4676     TCGA-75-5122 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  MUC7 MUTATED                            0                                 5
  MUC7 WILD-TYPE                          2                                34
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  MUC7 MUTATED                                                    9
  MUC7 WILD-TYPE                                                106
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  MUC7 MUTATED                                            0
  MUC7 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  MUC7 MUTATED                                               0
  MUC7 WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  MUC7 MUTATED                                0
  MUC7 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  MUC7 MUTATED                                    0
  MUC7 WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  MUC7 MUTATED                              0                             0
  MUC7 WILD-TYPE                            2                             4
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  MUC7 MUTATED                                               0
  MUC7 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  MUC7 MUTATED                              1
  MUC7 WILD-TYPE                            1
D15V9, multiclass
D15V10, binary
                cls
clus               0   1
  MUC7 MUTATED     1  14
  MUC7 WILD-TYPE  13 144
[1] "tbl2"
                cls
clus             [,1] [,2]
  MUC7 MUTATED      1   14
  MUC7 WILD-TYPE   13  144
     clus
vv    MUC7 MUTATED MUC7 WILD-TYPE
  NO             1             13
  YES           14            144
D15V11, continuous
D15V12, continuous
                vv
clus              R0  R1  R2  RX
  MUC7 MUTATED    13   1   0   0
  MUC7 WILD-TYPE 102   5   4   9
D15V13, multiclass
    clus
vv   MUC7 MUTATED MUC7 WILD-TYPE
  R0           13            102
  R1            1              5
  R2            0              4
  RX            0              9

Clustering(16) Variable = COL11A1 MUTATION ANALYSIS
D16V1, survival
                   sevent
clus2                0  1
  COL11A1 MUTATED   18 13
  COL11A1 WILD-TYPE 81 43
  COL11A1 MUTATED COL11A1 WILD-TYPE 
               31               124 
  COL11A1 MUTATED COL11A1 WILD-TYPE 
               13                43 
$`COL11A1 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4402 TCGA-05-4427 TCGA-35-5375 TCGA-38-4629 
       19.92         9.96         8.02        26.01         8.68        28.37 
TCGA-38-4631 TCGA-38-4632 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-4112 
       11.64        44.61        46.98        13.15        44.94        23.74 
TCGA-44-6774 TCGA-44-6776 TCGA-49-4494 TCGA-49-6743 TCGA-50-5049 TCGA-50-5072 
        5.42        63.72        35.54        12.13        70.55         8.05 
TCGA-50-5931 TCGA-50-5941 TCGA-50-6590 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        8.78        18.64        42.31        38.73        48.62        45.17 
TCGA-64-1678 TCGA-64-5775 TCGA-64-5781 TCGA-67-3771 TCGA-73-4659 TCGA-73-4666 
       39.09         2.04        51.25        20.02        23.38        26.27 
TCGA-73-4677 
        1.25 

$`COL11A1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4397 
       50.07         3.98        14.01        45.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05        19.00        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4430 
       29.95        12.00        30.02        21.99        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02        15.02         4.96        28.96 
TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
       22.03         0.99         2.04         0.46         7.36         5.95 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-6178 
       97.74       120.79        37.71        49.02        35.28        14.73 
TCGA-44-2655 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       21.93        24.36        42.08        42.77         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-5643 TCGA-44-5645 
       37.15        38.24        23.51         6.21        13.71        12.59 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 
       13.38        10.78         9.93        27.78        11.90        12.16 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       12.66        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
        5.16        55.89        15.02        29.26        17.13        20.48 
TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5930 
       71.47        14.96        25.81        31.04        49.28         9.27 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 
       35.87        77.88        21.47         8.45        15.12        29.00 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       25.12        22.55         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
        6.21        33.37        23.05         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1680 TCGA-64-5774 TCGA-64-5778 
        0.79        56.81        20.65        37.02        87.98        42.90 
TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       28.41        28.44         0.99        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4662 
        5.69         4.60        13.87         2.01        52.57        29.95 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-86-6562 TCGA-91-6828 
       15.35         4.27         1.32         5.39        12.36        10.62 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33        10.16         2.60        13.71 

  COL11A1 MUTATED COL11A1 WILD-TYPE 
             1.25              0.07 
  COL11A1 MUTATED COL11A1 WILD-TYPE 
            70.55            120.79 
  COL11A1 MUTATED COL11A1 WILD-TYPE 
           23.740            20.265 
[1] "1.2 - 70.5 (23.7)"  "0.1 - 120.8 (20.3)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED"   "COL11A1 MUTATED"   "COL11A1 MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
  "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
  "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED"   "COL11A1 MUTATED" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
  "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
  "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
  "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED"   "COL11A1 MUTATED"   "COL11A1 MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
  "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
  "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED"   "COL11A1 MUTATED" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
  "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
  "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
  "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED"   "COL11A1 MUTATED"   "COL11A1 MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
  "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
  "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED"   "COL11A1 MUTATED" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
  "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
  "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"COL11A1 WILD-TYPE"   "COL11A1 MUTATED" "COL11A1 WILD-TYPE"   "COL11A1 MUTATED" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
  "COL11A1 MUTATED" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" "COL11A1 WILD-TYPE" 
[1] "hr=" "1.1"
D16V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  COL11A1 MUTATED          5       10         1         5          9          1
  COL11A1 WILD-TYPE       32       43        10        18         24          5
                   vv
clus                STAGE IV
  COL11A1 MUTATED          3
  COL11A1 WILD-TYPE        6
D16V3, multiclass
                   vv
clus                T1 T2 T3 T4
  COL11A1 MUTATED    7 22  3  2
  COL11A1 WILD-TYPE 34 87 11  6
D16V4, multiclass
    clus
vv   COL11A1 MUTATED COL11A1 WILD-TYPE
  T1               7                34
  T2              22                87
  T3               3                11
  T4               2                 6
                   vv
clus                N0 N1 N2+N3
  COL11A1 MUTATED   19  5     8
  COL11A1 WILD-TYPE 76 32    27
D16V5, multiclass
       clus
vv      COL11A1 MUTATED COL11A1 WILD-TYPE
  N0                 19                76
  N1                  5                32
  N2+N3               8                27
                   vv
clus                 M0  M1  MX
  COL11A1 MUTATED    28   3   3
  COL11A1 WILD-TYPE 115   6  15
D16V6, multiclass
    clus
vv   COL11A1 MUTATED COL11A1 WILD-TYPE
  M0              28               115
  M1               3                 6
  MX               3                15
D16V7, binary
                   cls
clus                 0  1
  COL11A1 MUTATED   18 16
  COL11A1 WILD-TYPE 75 63
[1] "tbl2"
                   cls
clus                [,1] [,2]
  COL11A1 MUTATED     18   16
  COL11A1 WILD-TYPE   75   63
        clus
vv       COL11A1 MUTATED COL11A1 WILD-TYPE
  FEMALE              18                75
  MALE                16                63
D16V8, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  COL11A1 MUTATED                            0
  COL11A1 WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  COL11A1 MUTATED                                   6
  COL11A1 WILD-TYPE                                33
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  COL11A1 MUTATED                                                   26
  COL11A1 WILD-TYPE                                                 89
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  COL11A1 MUTATED                                            0
  COL11A1 WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  COL11A1 MUTATED                                               0
  COL11A1 WILD-TYPE                                             2
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  COL11A1 MUTATED                                2
  COL11A1 WILD-TYPE                              0
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  COL11A1 MUTATED                                    0
  COL11A1 WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  COL11A1 MUTATED                              0                             0
  COL11A1 WILD-TYPE                            2                             4
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  COL11A1 MUTATED                                               0
  COL11A1 WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  COL11A1 MUTATED                              0
  COL11A1 WILD-TYPE                            2
D16V9, multiclass
D16V10, binary
                   cls
clus                  0   1
  COL11A1 MUTATED     3  31
  COL11A1 WILD-TYPE  11 127
[1] "tbl2"
                   cls
clus                [,1] [,2]
  COL11A1 MUTATED      3   31
  COL11A1 WILD-TYPE   11  127
     clus
vv    COL11A1 MUTATED COL11A1 WILD-TYPE
  NO                3                11
  YES              31               127
D16V11, continuous
D16V12, continuous
                   vv
clus                R0 R1 R2 RX
  COL11A1 MUTATED   23  0  1  1
  COL11A1 WILD-TYPE 92  6  3  8
D16V13, multiclass
    clus
vv   COL11A1 MUTATED COL11A1 WILD-TYPE
  R0              23                92
  R1               0                 6
  R2               1                 3
  RX               1                 8

Clustering(17) Variable = BRAF MUTATION ANALYSIS
D17V1, survival
                sevent
clus2             0  1
  BRAF MUTATED    9  4
  BRAF WILD-TYPE 90 52
  BRAF MUTATED BRAF WILD-TYPE 
            13            142 
  BRAF MUTATED BRAF WILD-TYPE 
             4             52 
$`BRAF MUTATED`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4389 TCGA-05-5428 TCGA-44-2662 TCGA-44-2666 
       50.07        19.92        45.01        22.03        42.08         3.19 
TCGA-44-3918 TCGA-44-6774 TCGA-50-5044 TCGA-50-5933 TCGA-50-5941 TCGA-50-5942 
       23.51         5.42        20.48        77.88        18.64        29.00 
TCGA-50-6594 
       12.16 

$`BRAF WILD-TYPE`
TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
        3.98        14.01        37.02         9.96        24.03        47.05 
TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
        8.02        19.00        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
       29.95        12.00        30.02        21.99        26.01        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02        15.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
       28.96         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        97.74       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61        14.73        21.93        46.98 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2665 TCGA-44-2668 TCGA-44-3396 
       13.15        44.94        24.36        42.77         8.09        37.15 
TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
       38.24         6.21        23.74        13.71        12.59        13.38 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 
       10.78         9.93        27.78        11.90        12.16        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46         5.16        55.89        15.02        12.13        29.26 
TCGA-49-6745 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       17.13        71.47        70.55        14.96        25.81        31.04 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 
       49.28         8.05         9.27         8.78        35.87        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        8.45        15.12        25.12        22.55        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       25.51        11.05         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        87.98         2.04 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       42.90        28.41        51.25        28.44         0.99        20.02 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
       18.84        14.04        12.66         5.69         4.60        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        26.27        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 
        4.27         1.32         5.39         1.25        12.36        10.62 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33        10.16         2.60        13.71 

  BRAF MUTATED BRAF WILD-TYPE 
          3.19           0.07 
  BRAF MUTATED BRAF WILD-TYPE 
         77.88         120.79 
  BRAF MUTATED BRAF WILD-TYPE 
         22.03          20.35 
[1] "3.2 - 77.9 (22.0)"  "0.1 - 120.8 (20.4)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
  "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
  "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
  "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
[1] "hr=" "1.5"
D17V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  BRAF MUTATED          3        6         1         0          3          2
  BRAF WILD-TYPE       34       47        10        23         30          4
                vv
clus             STAGE IV
  BRAF MUTATED          0
  BRAF WILD-TYPE        9
D17V3, multiclass
                vv
clus              T1  T2  T3  T4
  BRAF MUTATED     5   7   1   2
  BRAF WILD-TYPE  36 102  13   6
D17V4, multiclass
    clus
vv   BRAF MUTATED BRAF WILD-TYPE
  T1            5             36
  T2            7            102
  T3            1             13
  T4            2              6
                vv
clus             N0 N1 N2+N3
  BRAF MUTATED    9  2     4
  BRAF WILD-TYPE 86 35    31
D17V5, multiclass
       clus
vv      BRAF MUTATED BRAF WILD-TYPE
  N0               9             86
  N1               2             35
  N2+N3            4             31
                vv
clus              M0  M1  MX
  BRAF MUTATED    15   0   0
  BRAF WILD-TYPE 128   9  18
D17V6, multiclass
    clus
vv   BRAF MUTATED BRAF WILD-TYPE
  M0           15            128
  M1            0              9
  MX            0             18
D17V7, binary
                cls
clus              0  1
  BRAF MUTATED    6  9
  BRAF WILD-TYPE 87 70
[1] "tbl2"
                cls
clus             [,1] [,2]
  BRAF MUTATED      6    9
  BRAF WILD-TYPE   87   70
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  FEMALE            6             87
  MALE              9             70
D17V8, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  BRAF MUTATED                            0                                 4
  BRAF WILD-TYPE                          2                                35
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  BRAF MUTATED                                                   11
  BRAF WILD-TYPE                                                104
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  BRAF MUTATED                                            0
  BRAF WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  BRAF MUTATED                                               0
  BRAF WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  BRAF MUTATED                                0
  BRAF WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  BRAF MUTATED                                    0
  BRAF WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  BRAF MUTATED                              0                             0
  BRAF WILD-TYPE                            2                             4
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  BRAF MUTATED                                               0
  BRAF WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  BRAF MUTATED                              0
  BRAF WILD-TYPE                            2
D17V9, multiclass
D17V10, binary
                cls
clus               0   1
  BRAF MUTATED     2  13
  BRAF WILD-TYPE  12 145
[1] "tbl2"
                cls
clus             [,1] [,2]
  BRAF MUTATED      2   13
  BRAF WILD-TYPE   12  145
     clus
vv    BRAF MUTATED BRAF WILD-TYPE
  NO             2             12
  YES           13            145
D17V11, continuous
D17V12, continuous
                vv
clus              R0  R1  R2  RX
  BRAF MUTATED     9   0   0   1
  BRAF WILD-TYPE 106   6   4   8
D17V13, multiclass
    clus
vv   BRAF MUTATED BRAF WILD-TYPE
  R0            9            106
  R1            0              6
  R2            0              4
  RX            1              8

Clustering(18) Variable = U2AF1 MUTATION ANALYSIS
D18V1, survival
                 sevent
clus2              0  1
  U2AF1 MUTATED    5  1
  U2AF1 WILD-TYPE 94 55
  U2AF1 MUTATED U2AF1 WILD-TYPE 
              6             149 
  U2AF1 MUTATED U2AF1 WILD-TYPE 
              1              55 
$`U2AF1 MUTATED`
TCGA-49-4505 TCGA-49-6743 TCGA-49-6744 TCGA-50-5941 TCGA-55-1595 TCGA-64-1680 
       14.07        12.13        29.26        18.64        48.62        37.02 

$`U2AF1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       21.99        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 
       15.02        15.02         4.96        28.96        22.03         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        97.74 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
      120.79        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61        14.73        21.93        46.98        13.15        44.94 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
       24.36        42.08        42.77         3.19         8.09        37.15 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
       38.24        23.51         6.21        23.74        13.71        12.59 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
       13.38        10.78         9.93        27.78        11.90         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
       12.16        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 
       28.11        28.57        12.66        35.54        46.72        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6745 
        8.81        29.46         5.16        55.89        15.02        17.13 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        70.55        14.96        25.81        31.04 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
       21.47         8.45        15.12        29.00        25.12        22.55 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       33.37        23.05        38.73        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-5774 
       32.61         0.79        56.81        20.65        39.09        87.98 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        2.04        42.90        28.41        51.25        28.44         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       20.02        18.84        14.04        12.66         5.69         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        26.27 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 
       15.35         4.27         1.32         5.39         1.25        12.36 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       10.62        41.33        10.16         2.60        13.71 

  U2AF1 MUTATED U2AF1 WILD-TYPE 
          12.13            0.07 
  U2AF1 MUTATED U2AF1 WILD-TYPE 
          48.62          120.79 
  U2AF1 MUTATED U2AF1 WILD-TYPE 
          23.95           20.65 
[1] "12.1 - 48.6 (24.0)" "0.1 - 120.8 (20.6)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"U2AF1 WILD-TYPE"   "U2AF1 MUTATED" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
  "U2AF1 MUTATED"   "U2AF1 MUTATED" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE"   "U2AF1 MUTATED" "U2AF1 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE"   "U2AF1 MUTATED" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
  "U2AF1 MUTATED" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"U2AF1 WILD-TYPE"   "U2AF1 MUTATED" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
  "U2AF1 MUTATED"   "U2AF1 MUTATED" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE"   "U2AF1 MUTATED" "U2AF1 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE"   "U2AF1 MUTATED" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
  "U2AF1 MUTATED" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"U2AF1 WILD-TYPE"   "U2AF1 MUTATED" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
  "U2AF1 MUTATED"   "U2AF1 MUTATED" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE"   "U2AF1 MUTATED" "U2AF1 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE"   "U2AF1 MUTATED" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
  "U2AF1 MUTATED" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
[1] "hr=" "2.4"
D18V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  U2AF1 MUTATED          1        0         1         1          2          0
  U2AF1 WILD-TYPE       36       53        10        22         31          6
                 vv
clus              STAGE IV
  U2AF1 MUTATED          1
  U2AF1 WILD-TYPE        8
D18V3, multiclass
                 vv
clus               T1  T2  T3  T4
  U2AF1 MUTATED     2   4   0   0
  U2AF1 WILD-TYPE  39 105  14   8
D18V4, multiclass
    clus
vv   U2AF1 MUTATED U2AF1 WILD-TYPE
  T1             2              39
  T2             4             105
  T3             0              14
  T4             0               8
                 vv
clus              N0 N1 N2+N3
  U2AF1 MUTATED    1  2     3
  U2AF1 WILD-TYPE 94 35    32
D18V5, multiclass
       clus
vv      U2AF1 MUTATED U2AF1 WILD-TYPE
  N0                1              94
  N1                2              35
  N2+N3             3              32
                 vv
clus               M0  M1  MX
  U2AF1 MUTATED     3   1   2
  U2AF1 WILD-TYPE 140   8  16
D18V6, multiclass
    clus
vv   U2AF1 MUTATED U2AF1 WILD-TYPE
  M0             3             140
  M1             1               8
  MX             2              16
D18V7, binary
                 cls
clus               0  1
  U2AF1 MUTATED    5  1
  U2AF1 WILD-TYPE 88 78
[1] "tbl2"
                 cls
clus              [,1] [,2]
  U2AF1 MUTATED      5    1
  U2AF1 WILD-TYPE   88   78
        clus
vv       U2AF1 MUTATED U2AF1 WILD-TYPE
  FEMALE             5              88
  MALE               1              78
D18V8, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  U2AF1 MUTATED                            0                                 2
  U2AF1 WILD-TYPE                          2                                37
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  U2AF1 MUTATED                                                    2
  U2AF1 WILD-TYPE                                                113
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  U2AF1 MUTATED                                            0
  U2AF1 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  U2AF1 MUTATED                                               0
  U2AF1 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  U2AF1 MUTATED                                2
  U2AF1 WILD-TYPE                              0
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  U2AF1 MUTATED                                    0
  U2AF1 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  U2AF1 MUTATED                              0                             0
  U2AF1 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  U2AF1 MUTATED                                               0
  U2AF1 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  U2AF1 MUTATED                              0
  U2AF1 WILD-TYPE                            2
D18V9, multiclass
D18V10, binary
                 cls
clus                0   1
  U2AF1 MUTATED     1   5
  U2AF1 WILD-TYPE  13 153
[1] "tbl2"
                 cls
clus              [,1] [,2]
  U2AF1 MUTATED      1    5
  U2AF1 WILD-TYPE   13  153
     clus
vv    U2AF1 MUTATED U2AF1 WILD-TYPE
  NO              1              13
  YES             5             153
D18V11, continuous
D18V12, continuous
                 vv
clus               R0  R1  R2  RX
  U2AF1 MUTATED     3   0   0   0
  U2AF1 WILD-TYPE 112   6   4   9
D18V13, multiclass
    clus
vv   U2AF1 MUTATED U2AF1 WILD-TYPE
  R0             3             112
  R1             0               6
  R2             0               4
  RX             0               9

Clustering(19) Variable = PCK1 MUTATION ANALYSIS
D19V1, survival
                sevent
clus2             0  1
  PCK1 MUTATED    4  5
  PCK1 WILD-TYPE 95 51
  PCK1 MUTATED PCK1 WILD-TYPE 
             9            146 
  PCK1 MUTATED PCK1 WILD-TYPE 
             5             51 
$`PCK1 MUTATED`
TCGA-05-4250 TCGA-05-4396 TCGA-05-4425 TCGA-38-4632 TCGA-44-2655 TCGA-50-5049 
        3.98         9.96        21.99        44.61        21.93        70.55 
TCGA-64-1677 TCGA-64-5775 TCGA-67-3771 
       20.65         2.04        20.02 

$`PCK1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4397 
       50.07        19.92        14.01        45.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 
        8.98        29.95        12.00        30.02        26.01        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02        15.02         4.96 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
       28.96        22.03         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        97.74       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-44-2656 TCGA-44-2657 
       28.37        35.28        11.64        14.73        46.98        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       44.94        24.36        42.08        42.77         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       37.15        38.24        23.51         6.21        23.74        13.71 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
       12.59        13.38        10.78         9.93        27.78        11.90 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42        12.16        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46         5.16        55.89 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        29.26        17.13        20.48        71.47 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81        31.04        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
       18.64        29.00        25.12        22.55        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5778 
        0.79        56.81        39.09        37.02        87.98        42.90 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 
       28.41        51.25        28.44         0.99        18.84        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
       12.66         5.69         4.60        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        26.27        15.35         4.27         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        5.39         1.25        12.36        10.62        41.33        10.16 
TCGA-91-6835 TCGA-91-6836 
        2.60        13.71 

  PCK1 MUTATED PCK1 WILD-TYPE 
          2.04           0.07 
  PCK1 MUTATED PCK1 WILD-TYPE 
         70.55         120.79 
  PCK1 MUTATED PCK1 WILD-TYPE 
        20.650         20.975 
[1] "2.0 - 70.5 (20.6)"  "0.1 - 120.8 (21.0)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
  "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
  "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
  "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
  "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
  "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE"   "PCK1 MUTATED" "PCK1 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
  "PCK1 MUTATED" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
[1] "hr=" "1.8"
D19V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  PCK1 MUTATED          3        1         0         0          3          1
  PCK1 WILD-TYPE       34       52        11        23         30          5
                vv
clus             STAGE IV
  PCK1 MUTATED          2
  PCK1 WILD-TYPE        7
D19V3, multiclass
                vv
clus              T1  T2  T3  T4
  PCK1 MUTATED     2   5   1   2
  PCK1 WILD-TYPE  39 104  13   6
D19V4, multiclass
    clus
vv   PCK1 MUTATED PCK1 WILD-TYPE
  T1            2             39
  T2            5            104
  T3            1             13
  T4            2              6
                vv
clus             N0 N1 N2+N3
  PCK1 MUTATED    6  3     1
  PCK1 WILD-TYPE 89 34    34
D19V5, multiclass
       clus
vv      PCK1 MUTATED PCK1 WILD-TYPE
  N0               6             89
  N1               3             34
  N2+N3            1             34
                vv
clus              M0  M1  MX
  PCK1 MUTATED     8   2   0
  PCK1 WILD-TYPE 135   7  18
D19V6, multiclass
    clus
vv   PCK1 MUTATED PCK1 WILD-TYPE
  M0            8            135
  M1            2              7
  MX            0             18
D19V7, binary
                cls
clus              0  1
  PCK1 MUTATED    5  5
  PCK1 WILD-TYPE 88 74
[1] "tbl2"
                cls
clus             [,1] [,2]
  PCK1 MUTATED      5    5
  PCK1 WILD-TYPE   88   74
        clus
vv       PCK1 MUTATED PCK1 WILD-TYPE
  FEMALE            5             88
  MALE              5             74
D19V8, continuous
[1] "Remove cluster labels:" "PCK1 MUTATED"          
clus
  PCK1 MUTATED PCK1 WILD-TYPE 
             1             11 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-64-5778 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-71-6725     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4676     TCGA-75-5122 
"PCK1 WILD-TYPE" "PCK1 WILD-TYPE" "PCK1 WILD-TYPE" 
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  PCK1 MUTATED                            0                                 3
  PCK1 WILD-TYPE                          2                                36
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  PCK1 MUTATED                                                    7
  PCK1 WILD-TYPE                                                108
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  PCK1 MUTATED                                            0
  PCK1 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  PCK1 MUTATED                                               0
  PCK1 WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  PCK1 MUTATED                                0
  PCK1 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  PCK1 MUTATED                                    0
  PCK1 WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  PCK1 MUTATED                              0                             0
  PCK1 WILD-TYPE                            2                             4
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  PCK1 MUTATED                                               0
  PCK1 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  PCK1 MUTATED                              0
  PCK1 WILD-TYPE                            2
D19V9, multiclass
D19V10, binary
                cls
clus               0   1
  PCK1 MUTATED     1   9
  PCK1 WILD-TYPE  13 149
[1] "tbl2"
                cls
clus             [,1] [,2]
  PCK1 MUTATED      1    9
  PCK1 WILD-TYPE   13  149
     clus
vv    PCK1 MUTATED PCK1 WILD-TYPE
  NO             1             13
  YES            9            149
D19V11, continuous
D19V12, continuous
                vv
clus              R0  R1  R2  RX
  PCK1 MUTATED     6   1   1   1
  PCK1 WILD-TYPE 109   5   3   8
D19V13, multiclass
    clus
vv   PCK1 MUTATED PCK1 WILD-TYPE
  R0            6            109
  R1            1              5
  R2            1              3
  RX            1              8

Clustering(20) Variable = CSMD3 MUTATION ANALYSIS
D20V1, survival
                 sevent
clus2              0  1
  CSMD3 MUTATED   47 23
  CSMD3 WILD-TYPE 52 33
  CSMD3 MUTATED CSMD3 WILD-TYPE 
             70              85 
  CSMD3 MUTATED CSMD3 WILD-TYPE 
             23              33 
$`CSMD3 MUTATED`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       50.07        19.92        45.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4417 TCGA-05-4424 TCGA-05-4427 
       47.05         8.02        20.05        14.93        30.02        26.01 
TCGA-05-4432 TCGA-05-5425 TCGA-05-5428 TCGA-38-4625 TCGA-38-4631 TCGA-38-4632 
       25.02        28.96        22.03        97.74        11.64        44.61 
TCGA-44-2656 TCGA-44-2662 TCGA-44-2665 TCGA-44-2668 TCGA-44-3918 TCGA-44-4112 
       46.98        42.08        42.77         8.09        23.51        23.74 
TCGA-44-5643 TCGA-44-6144 TCGA-44-6145 TCGA-44-6147 TCGA-44-6774 TCGA-44-6775 
       13.71        13.38        10.78        27.78         5.42        12.16 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4487 TCGA-49-4488 TCGA-49-4505 
       32.45        36.49        16.41        28.11        28.57        14.07 
TCGA-49-4506 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-50-5049 
       32.84        55.89        15.02        12.13        29.26        70.55 
TCGA-50-5068 TCGA-50-5933 TCGA-50-5941 TCGA-50-5944 TCGA-50-6590 TCGA-50-6592 
       49.28        77.88        18.64        25.12        42.31        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       11.05        12.16        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-64-1676 TCGA-64-1678 TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 
        2.86        56.81        39.09         2.04        42.90        51.25 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-73-4658 TCGA-73-4668 TCGA-73-4670 
       28.44         0.99        20.02        52.57        15.35         4.27 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6831 TCGA-91-6835 
        5.39         1.25        10.16         2.60 

$`CSMD3 WILD-TYPE`
TCGA-05-4250 TCGA-05-4384 TCGA-05-4403 TCGA-05-4415 TCGA-05-4418 TCGA-05-4420 
        3.98        14.01        19.00         2.96         8.98        29.95 
TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 
       12.00        21.99        26.01        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
       15.02         4.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        5.95         8.68       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       35.28        14.73        21.93        13.15        44.94        24.36 
TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-5645 TCGA-44-6146 
        3.19        37.15        38.24         6.21        12.59         9.93 
TCGA-44-6148 TCGA-44-6776 TCGA-49-4486 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       11.90        63.72        76.21        12.66        35.54        46.72 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
        8.81        29.46         5.16        17.13        20.48        71.47 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       14.96        25.81        31.04         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 TCGA-50-5946 
       35.87        21.47         8.45        15.12        29.00        22.55 
TCGA-50-6591 TCGA-50-6595 TCGA-50-6597 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
        3.88         6.21        33.37         0.07        32.61         0.79 
TCGA-64-1677 TCGA-64-1680 TCGA-64-5774 TCGA-64-5779 TCGA-67-3772 TCGA-67-3773 
       20.65        37.02        87.98        28.41        18.84        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4659 
       12.66         5.69         4.60        13.87         2.01        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4675 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 
       29.95        26.27         1.32        12.36        10.62        41.33 
TCGA-91-6836 
       13.71 

  CSMD3 MUTATED CSMD3 WILD-TYPE 
           0.99            0.07 
  CSMD3 MUTATED CSMD3 WILD-TYPE 
          97.74          120.79 
  CSMD3 MUTATED CSMD3 WILD-TYPE 
          25.07           15.02 
[1] "1.0 - 97.7 (25.1)"  "0.1 - 120.8 (15.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
  "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
  "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
  "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
  "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
  "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
  "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
  "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
  "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
  "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED"   "CSMD3 MUTATED" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
  "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
[1] "hr=" "1.6"
D20V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  CSMD3 MUTATED         19       24         4        16          9          3
  CSMD3 WILD-TYPE       18       29         7         7         24          3
                 vv
clus              STAGE IV
  CSMD3 MUTATED          3
  CSMD3 WILD-TYPE        6
D20V3, multiclass
                 vv
clus              T1 T2 T3 T4
  CSMD3 MUTATED   20 50  4  4
  CSMD3 WILD-TYPE 21 59 10  4
D20V4, multiclass
    clus
vv   CSMD3 MUTATED CSMD3 WILD-TYPE
  T1            20              21
  T2            50              59
  T3             4              10
  T4             4               4
                 vv
clus              N0 N1 N2+N3
  CSMD3 MUTATED   45 20    10
  CSMD3 WILD-TYPE 50 17    25
D20V5, multiclass
       clus
vv      CSMD3 MUTATED CSMD3 WILD-TYPE
  N0               45              50
  N1               20              17
  N2+N3            10              25
                 vv
clus              M0 M1 MX
  CSMD3 MUTATED   65  3 10
  CSMD3 WILD-TYPE 78  6  8
D20V6, multiclass
    clus
vv   CSMD3 MUTATED CSMD3 WILD-TYPE
  M0            65              78
  M1             3               6
  MX            10               8
D20V7, binary
                 cls
clus               0  1
  CSMD3 MUTATED   44 34
  CSMD3 WILD-TYPE 49 45
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CSMD3 MUTATED     44   34
  CSMD3 WILD-TYPE   49   45
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  FEMALE            44              49
  MALE              34              45
D20V8, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  CSMD3 MUTATED                            1                                19
  CSMD3 WILD-TYPE                          1                                20
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CSMD3 MUTATED                                                   50
  CSMD3 WILD-TYPE                                                 65
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  CSMD3 MUTATED                                            0
  CSMD3 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  CSMD3 MUTATED                                               1
  CSMD3 WILD-TYPE                                             1
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  CSMD3 MUTATED                                2
  CSMD3 WILD-TYPE                              0
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  CSMD3 MUTATED                                    1
  CSMD3 WILD-TYPE                                  1
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  CSMD3 MUTATED                              0                             2
  CSMD3 WILD-TYPE                            2                             2
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  CSMD3 MUTATED                                               1
  CSMD3 WILD-TYPE                                             0
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  CSMD3 MUTATED                              1
  CSMD3 WILD-TYPE                            1
D20V9, multiclass
D20V10, binary
                 cls
clus               0  1
  CSMD3 MUTATED    5 73
  CSMD3 WILD-TYPE  9 85
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CSMD3 MUTATED      5   73
  CSMD3 WILD-TYPE    9   85
     clus
vv    CSMD3 MUTATED CSMD3 WILD-TYPE
  NO              5               9
  YES            73              85
D20V11, continuous
D20V12, continuous
                 vv
clus              R0 R1 R2 RX
  CSMD3 MUTATED   53  2  2  3
  CSMD3 WILD-TYPE 62  4  2  6
D20V13, multiclass
    clus
vv   CSMD3 MUTATED CSMD3 WILD-TYPE
  R0            53              62
  R1             2               4
  R2             2               2
  RX             3               6

Clustering(21) Variable = RIMS2 MUTATION ANALYSIS
D21V1, survival
                 sevent
clus2              0  1
  RIMS2 MUTATED   15 14
  RIMS2 WILD-TYPE 84 42
  RIMS2 MUTATED RIMS2 WILD-TYPE 
             29             126 
  RIMS2 MUTATED RIMS2 WILD-TYPE 
             14              42 
$`RIMS2 MUTATED`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4415 TCGA-38-4628 TCGA-38-4630 TCGA-38-4632 
       50.07        19.92         2.96        49.02        35.28        44.61 
TCGA-44-2656 TCGA-44-6778 TCGA-49-4510 TCGA-49-6742 TCGA-50-5049 TCGA-50-5066 
       46.98        36.49        29.46        15.02        70.55        31.04 
TCGA-50-5932 TCGA-50-5933 TCGA-50-6590 TCGA-50-6593 TCGA-55-1592 TCGA-55-5899 
       35.87        77.88        42.31        11.05        23.05         2.86 
TCGA-64-1677 TCGA-64-5775 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       20.65         2.04        51.25        28.44         0.99        20.02 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 TCGA-91-6828 TCGA-91-6836 
       52.57        23.38        26.27        10.62        13.71 

$`RIMS2 WILD-TYPE`
TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
        3.98        14.01        45.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        19.00        20.05        14.93         8.98 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
       29.95        12.00        30.02        21.99        26.01        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02        15.02         4.96 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
       28.96        22.03         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4629 
        5.95         8.68        97.74       120.79        37.71        28.37 
TCGA-38-4631 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       11.64        14.73        21.93        13.15        44.94        24.36 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       42.08        42.77         3.19         8.09        37.15        38.24 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
       23.51         6.21        23.74        13.71        12.59        13.38 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
       10.78         9.93        27.78        11.90         5.42        12.16 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       63.72        32.45        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
        5.16        55.89        12.13        29.26        17.13        20.48 
TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       71.47        14.96        25.81        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
        8.78        21.47         8.45        15.12        18.64        29.00 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 
       25.12        22.55         3.88        25.51        12.16         6.21 
TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 
       33.37        38.73        48.62        45.17         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5778 
        0.79        56.81        39.09        37.02        87.98        42.90 
TCGA-64-5779 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       28.41        18.84        14.04        12.66         5.69         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       13.87         2.01        29.95        15.35         4.27         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        5.39         1.25        12.36        41.33        10.16         2.60 

  RIMS2 MUTATED RIMS2 WILD-TYPE 
           0.99            0.07 
  RIMS2 MUTATED RIMS2 WILD-TYPE 
          77.88          120.79 
  RIMS2 MUTATED RIMS2 WILD-TYPE 
          28.44           18.74 
[1] "1.0 - 77.9 (28.4)"  "0.1 - 120.8 (18.7)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED"   "RIMS2 MUTATED"   "RIMS2 MUTATED" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
  "RIMS2 MUTATED"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED"   "RIMS2 MUTATED"   "RIMS2 MUTATED" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
  "RIMS2 MUTATED"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED"   "RIMS2 MUTATED"   "RIMS2 MUTATED" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
  "RIMS2 MUTATED"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
[1] "hr=" "1"  
D21V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  RIMS2 MUTATED          7        9         0         7          5          2
  RIMS2 WILD-TYPE       30       44        11        16         28          4
                 vv
clus              STAGE IV
  RIMS2 MUTATED          2
  RIMS2 WILD-TYPE        7
D21V3, multiclass
                 vv
clus              T1 T2 T3 T4
  RIMS2 MUTATED    7 20  2  3
  RIMS2 WILD-TYPE 34 89 12  5
D21V4, multiclass
    clus
vv   RIMS2 MUTATED RIMS2 WILD-TYPE
  T1             7              34
  T2            20              89
  T3             2              12
  T4             3               5
                 vv
clus              N0 N1 N2+N3
  RIMS2 MUTATED   18  8     6
  RIMS2 WILD-TYPE 77 29    29
D21V5, multiclass
       clus
vv      RIMS2 MUTATED RIMS2 WILD-TYPE
  N0               18              77
  N1                8              29
  N2+N3             6              29
                 vv
clus               M0  M1  MX
  RIMS2 MUTATED    27   2   3
  RIMS2 WILD-TYPE 116   7  15
D21V6, multiclass
    clus
vv   RIMS2 MUTATED RIMS2 WILD-TYPE
  M0            27             116
  M1             2               7
  MX             3              15
D21V7, binary
                 cls
clus               0  1
  RIMS2 MUTATED   14 18
  RIMS2 WILD-TYPE 79 61
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RIMS2 MUTATED     14   18
  RIMS2 WILD-TYPE   79   61
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  FEMALE            14              79
  MALE              18              61
D21V8, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  RIMS2 MUTATED                            0                                 6
  RIMS2 WILD-TYPE                          2                                33
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  RIMS2 MUTATED                                                   23
  RIMS2 WILD-TYPE                                                 92
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  RIMS2 MUTATED                                            0
  RIMS2 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  RIMS2 MUTATED                                               0
  RIMS2 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  RIMS2 MUTATED                                0
  RIMS2 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  RIMS2 MUTATED                                    0
  RIMS2 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  RIMS2 MUTATED                              0                             2
  RIMS2 WILD-TYPE                            2                             2
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  RIMS2 MUTATED                                               0
  RIMS2 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  RIMS2 MUTATED                              1
  RIMS2 WILD-TYPE                            1
D21V9, multiclass
D21V10, binary
                 cls
clus                0   1
  RIMS2 MUTATED     3  29
  RIMS2 WILD-TYPE  11 129
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RIMS2 MUTATED      3   29
  RIMS2 WILD-TYPE   11  129
     clus
vv    RIMS2 MUTATED RIMS2 WILD-TYPE
  NO              3              11
  YES            29             129
D21V11, continuous
D21V12, continuous
                 vv
clus              R0 R1 R2 RX
  RIMS2 MUTATED   23  1  1  0
  RIMS2 WILD-TYPE 92  5  3  9
D21V13, multiclass
    clus
vv   RIMS2 MUTATED RIMS2 WILD-TYPE
  R0            23              92
  R1             1               5
  R2             1               3
  RX             0               9

Clustering(22) Variable = FTSJD1 MUTATION ANALYSIS
D22V1, survival
                  sevent
clus2               0  1
  FTSJD1 MUTATED    3  3
  FTSJD1 WILD-TYPE 96 53
  FTSJD1 MUTATED FTSJD1 WILD-TYPE 
               6              149 
  FTSJD1 MUTATED FTSJD1 WILD-TYPE 
               3               53 
$`FTSJD1 MUTATED`
TCGA-05-4396 TCGA-05-4420 TCGA-38-4625 TCGA-44-3398 TCGA-44-4112 TCGA-73-4658 
        9.96        29.95        97.74        38.24        23.74        52.57 

$`FTSJD1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
       14.93         8.98        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        4.96        28.96        22.03         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        7.36         5.95         8.68       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61        14.73        21.93 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       46.98        13.15        44.94        24.36        42.08        42.77 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3918 TCGA-44-3919 TCGA-44-5643 
        3.19         8.09        37.15        23.51         6.21        13.71 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
       12.59        13.38        10.78         9.93        27.78        11.90 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42        12.16        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46         5.16        55.89 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        29.26        17.13        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       70.55        14.96        25.81        31.04        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12        18.64        29.00        25.12        22.55        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       87.98         2.04        42.90        28.41        51.25        28.44 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99        20.02        18.84        14.04        12.66         5.69 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
        4.60        13.87         2.01        23.38        29.95        26.27 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 
       15.35         4.27         1.32         5.39         1.25        12.36 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       10.62        41.33        10.16         2.60        13.71 

  FTSJD1 MUTATED FTSJD1 WILD-TYPE 
            9.96             0.07 
  FTSJD1 MUTATED FTSJD1 WILD-TYPE 
           97.74           120.79 
  FTSJD1 MUTATED FTSJD1 WILD-TYPE 
          34.095           20.050 
[1] "10.0 - 97.7 (34.1)" "0.1 - 120.8 (20.1)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
  "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
  "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"FTSJD1 WILD-TYPE"   "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
  "FTSJD1 MUTATED" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
[1] "hr=" "1.4"
D22V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  FTSJD1 MUTATED          1        4         0         0          0          1
  FTSJD1 WILD-TYPE       36       49        11        23         33          5
                  vv
clus               STAGE IV
  FTSJD1 MUTATED          0
  FTSJD1 WILD-TYPE        9
D22V3, multiclass
                  vv
clus                T1  T2  T3  T4
  FTSJD1 MUTATED     1   4   0   1
  FTSJD1 WILD-TYPE  40 105  14   7
D22V4, multiclass
    clus
vv   FTSJD1 MUTATED FTSJD1 WILD-TYPE
  T1              1               40
  T2              4              105
  T3              0               14
  T4              1                7
                  vv
clus               N0 N1 N2+N3
  FTSJD1 MUTATED    5  1     0
  FTSJD1 WILD-TYPE 90 36    35
D22V5, multiclass
       clus
vv      FTSJD1 MUTATED FTSJD1 WILD-TYPE
  N0                 5               90
  N1                 1               36
  N2+N3              0               35
                  vv
clus                M0  M1  MX
  FTSJD1 MUTATED     6   0   0
  FTSJD1 WILD-TYPE 137   9  18
D22V6, multiclass
    clus
vv   FTSJD1 MUTATED FTSJD1 WILD-TYPE
  M0              6              137
  M1              0                9
  MX              0               18
D22V7, binary
                  cls
clus                0  1
  FTSJD1 MUTATED    4  2
  FTSJD1 WILD-TYPE 89 77
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FTSJD1 MUTATED      4    2
  FTSJD1 WILD-TYPE   89   77
        clus
vv       FTSJD1 MUTATED FTSJD1 WILD-TYPE
  FEMALE              4               89
  MALE                2               77
D22V8, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  FTSJD1 MUTATED                            0                                 2
  FTSJD1 WILD-TYPE                          2                                37
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  FTSJD1 MUTATED                                                    4
  FTSJD1 WILD-TYPE                                                111
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  FTSJD1 MUTATED                                            0
  FTSJD1 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  FTSJD1 MUTATED                                               0
  FTSJD1 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  FTSJD1 MUTATED                                0
  FTSJD1 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  FTSJD1 MUTATED                                    0
  FTSJD1 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  FTSJD1 MUTATED                              0                             0
  FTSJD1 WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  FTSJD1 MUTATED                                               0
  FTSJD1 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  FTSJD1 MUTATED                              0
  FTSJD1 WILD-TYPE                            2
D22V9, multiclass
D22V10, binary
                  cls
clus                 0   1
  FTSJD1 MUTATED     0   6
  FTSJD1 WILD-TYPE  14 152
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FTSJD1 MUTATED      0    6
  FTSJD1 WILD-TYPE   14  152
     clus
vv    FTSJD1 MUTATED FTSJD1 WILD-TYPE
  NO               0               14
  YES              6              152
D22V11, continuous
D22V12, continuous
                  vv
clus                R0  R1  R2  RX
  FTSJD1 MUTATED     6   0   0   0
  FTSJD1 WILD-TYPE 109   6   4   9
D22V13, multiclass
    clus
vv   FTSJD1 MUTATED FTSJD1 WILD-TYPE
  R0              6              109
  R1              0                6
  R2              0                4
  RX              0                9

Clustering(23) Variable = RB1 MUTATION ANALYSIS
D23V1, survival
               sevent
clus2            0  1
  RB1 MUTATED    4  3
  RB1 WILD-TYPE 95 53
  RB1 MUTATED RB1 WILD-TYPE 
            7           148 
  RB1 MUTATED RB1 WILD-TYPE 
            3            53 
$`RB1 MUTATED`
TCGA-05-4397 TCGA-05-4415 TCGA-35-5375 TCGA-44-6775 TCGA-91-6828 TCGA-91-6829 
       24.03         2.96         8.68        12.16        10.62        41.33 
TCGA-91-6835 
        2.60 

$`RB1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4417 
        9.96        47.05         8.02        19.00        20.05        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        4.96        28.96        22.03         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        7.36         5.95        97.74       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61        14.73        21.93 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       46.98        13.15        44.94        24.36        42.08        42.77 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        37.15        38.24        23.51         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
       23.74        13.71        12.59        13.38        10.78         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
       27.78        11.90         5.42        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46         5.16 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       55.89        15.02        12.13        29.26        17.13        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        70.55        14.96        25.81        31.04        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12        18.64        29.00        25.12        22.55 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        87.98         2.04        42.90        28.41        51.25 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       28.44         0.99        20.02        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        5.69         4.60        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        26.27        15.35         4.27         1.32         5.39 
TCGA-73-4677 TCGA-86-6562 TCGA-91-6831 TCGA-91-6836 
        1.25        12.36        10.16        13.71 

  RB1 MUTATED RB1 WILD-TYPE 
         2.60          0.07 
  RB1 MUTATED RB1 WILD-TYPE 
        41.33        120.79 
  RB1 MUTATED RB1 WILD-TYPE 
        10.62         21.70 
[1] "2.6 - 41.3 (10.6)"  "0.1 - 120.8 (21.7)"
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428    TCGA-05-5429 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-86-6562 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-91-6828    TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
  "RB1 MUTATED"   "RB1 MUTATED" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428    TCGA-05-5429 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-86-6562 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-91-6828    TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
  "RB1 MUTATED"   "RB1 MUTATED" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428    TCGA-05-5429 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-86-6562 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-91-6828    TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
  "RB1 MUTATED"   "RB1 MUTATED" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
[1] "hr=" "2.2"
D23V2, continuous
               vv
clus            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  RB1 MUTATED          2        2         0         1          1          1
  RB1 WILD-TYPE       35       51        11        22         32          5
               vv
clus            STAGE IV
  RB1 MUTATED          0
  RB1 WILD-TYPE        9
D23V3, multiclass
               vv
clus             T1  T2  T3  T4
  RB1 MUTATED     2   4   0   1
  RB1 WILD-TYPE  39 105  14   7
D23V4, multiclass
    clus
vv   RB1 MUTATED RB1 WILD-TYPE
  T1           2            39
  T2           4           105
  T3           0            14
  T4           1             7
               vv
clus            N0 N1 N2+N3
  RB1 MUTATED    4  1     2
  RB1 WILD-TYPE 91 36    33
D23V5, multiclass
       clus
vv      RB1 MUTATED RB1 WILD-TYPE
  N0              4            91
  N1              1            36
  N2+N3           2            33
               vv
clus             M0  M1  MX
  RB1 MUTATED     5   0   2
  RB1 WILD-TYPE 138   9  16
D23V6, multiclass
    clus
vv   RB1 MUTATED RB1 WILD-TYPE
  M0           5           138
  M1           0             9
  MX           2            16
D23V7, binary
               cls
clus             0  1
  RB1 MUTATED    2  5
  RB1 WILD-TYPE 91 74
[1] "tbl2"
               cls
clus            [,1] [,2]
  RB1 MUTATED      2    5
  RB1 WILD-TYPE   91   74
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  FEMALE           2            91
  MALE             5            74
D23V8, continuous
[1] "Remove cluster labels:" "RB1 MUTATED"           
clus
  RB1 MUTATED RB1 WILD-TYPE 
            1            11 
   TCGA-35-4122    TCGA-35-4123    TCGA-64-1677    TCGA-64-5778    TCGA-71-6725 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668    TCGA-73-4676 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-75-5122 
"RB1 WILD-TYPE" 
               vv
clus            LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  RB1 MUTATED                            0                                 2
  RB1 WILD-TYPE                          2                                37
               vv
clus            LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  RB1 MUTATED                                                    4
  RB1 WILD-TYPE                                                111
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  RB1 MUTATED                                            0
  RB1 WILD-TYPE                                          1
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  RB1 MUTATED                                               1
  RB1 WILD-TYPE                                             1
               vv
clus            LUNG CLEAR CELL ADENOCARCINOMA
  RB1 MUTATED                                0
  RB1 WILD-TYPE                              2
               vv
clus            LUNG MICROPAPILLARY ADENOCARCINOMA LUNG MUCINOUS ADENOCARCINOMA
  RB1 MUTATED                                    0                            0
  RB1 WILD-TYPE                                  2                            2
               vv
clus            LUNG PAPILLARY ADENOCARCINOMA
  RB1 MUTATED                               0
  RB1 WILD-TYPE                             4
               vv
clus            LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  RB1 MUTATED                                               0
  RB1 WILD-TYPE                                             1
               vv
clus            MUCINOUS (COLLOID) CARCINOMA
  RB1 MUTATED                              0
  RB1 WILD-TYPE                            2
D23V9, multiclass
D23V10, binary
               cls
clus              0   1
  RB1 MUTATED     0   7
  RB1 WILD-TYPE  14 151
[1] "tbl2"
               cls
clus            [,1] [,2]
  RB1 MUTATED      0    7
  RB1 WILD-TYPE   14  151
     clus
vv    RB1 MUTATED RB1 WILD-TYPE
  NO            0            14
  YES           7           151
D23V11, continuous
D23V12, continuous
               vv
clus             R0  R1  R2  RX
  RB1 MUTATED     6   0   0   1
  RB1 WILD-TYPE 109   6   4   8
D23V13, multiclass
    clus
vv   RB1 MUTATED RB1 WILD-TYPE
  R0           6           109
  R1           0             6
  R2           0             4
  RX           1             8

Clustering(24) Variable = LRP1B MUTATION ANALYSIS
D24V1, survival
                 sevent
clus2              0  1
  LRP1B MUTATED   35 19
  LRP1B WILD-TYPE 64 37
  LRP1B MUTATED LRP1B WILD-TYPE 
             54             101 
  LRP1B MUTATED LRP1B WILD-TYPE 
             19              37 
$`LRP1B MUTATED`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4389 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
       50.07        19.92        45.01         9.96        24.03        47.05 
TCGA-05-4405 TCGA-05-4418 TCGA-05-4424 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       20.05         8.98        30.02        26.01        25.02        25.02 
TCGA-05-5420 TCGA-35-3615 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
       15.02         0.46         5.95         8.68        97.74       120.79 
TCGA-38-4631 TCGA-38-4632 TCGA-44-2661 TCGA-44-2668 TCGA-44-3398 TCGA-44-3918 
       11.64        44.61        24.36         8.09        38.24        23.51 
TCGA-44-4112 TCGA-44-6145 TCGA-44-6774 TCGA-44-6779 TCGA-49-4487 TCGA-49-4488 
       23.74        10.78         5.42        16.41        28.11        28.57 
TCGA-49-4494 TCGA-49-6742 TCGA-49-6743 TCGA-49-6745 TCGA-50-5049 TCGA-50-5933 
       35.54        15.02        12.13        17.13        70.55        77.88 
TCGA-50-5941 TCGA-50-6590 TCGA-50-6593 TCGA-50-6595 TCGA-55-1592 TCGA-55-1596 
       18.64        42.31        11.05         6.21        23.05        45.17 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1680 TCGA-64-5775 TCGA-64-5778 TCGA-67-3771 
       56.81        20.65        37.02         2.04        42.90        20.02 
TCGA-73-4658 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-91-6828 TCGA-91-6836 
       52.57        29.95        26.27        15.35        10.62        13.71 

$`LRP1B WILD-TYPE`
TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4402 TCGA-05-4403 TCGA-05-4415 
        3.98        14.01        37.02         8.02        19.00         2.96 
TCGA-05-4417 TCGA-05-4420 TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 TCGA-05-4433 
       14.93        29.95        12.00        21.99        26.01        24.00 
TCGA-05-4434 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 
       15.02         4.96        28.96        22.03         0.99         2.04 
TCGA-35-4122 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-6178 
        7.36        37.71        49.02        28.37        35.28        14.73 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2662 TCGA-44-2665 
       21.93        46.98        13.15        44.94        42.08        42.77 
TCGA-44-2666 TCGA-44-3396 TCGA-44-3919 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        3.19        37.15         6.21        13.71        12.59        13.38 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        9.93        27.78        11.90        12.16        63.72        32.45 
TCGA-44-6778 TCGA-49-4486 TCGA-49-4490 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       36.49        76.21        12.66        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6744 TCGA-50-5044 
        8.81        29.46         5.16        55.89        29.26        20.48 
TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       71.47        14.96        25.81        31.04        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        9.27         8.78        35.87        21.47         8.45        15.12 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6594 
       29.00        25.12        22.55         3.88        25.51        12.16 
TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       33.37        38.73        48.62         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1678 TCGA-64-5774 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
        0.79        39.09        87.98        28.41        51.25        28.44 
TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        0.99        18.84        14.04        12.66         5.69         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4659 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       13.87         2.01        23.38         4.27         1.32         5.39 
TCGA-73-4677 TCGA-86-6562 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.25        12.36        41.33        10.16         2.60 

  LRP1B MUTATED LRP1B WILD-TYPE 
           0.46            0.07 
  LRP1B MUTATED LRP1B WILD-TYPE 
         120.79           87.98 
  LRP1B MUTATED LRP1B WILD-TYPE 
         23.625          18.840 
[1] "0.5 - 120.8 (23.6)" "0.1 - 88.0 (18.8)" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
  "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "LRP1B MUTATED"   "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED"   "LRP1B MUTATED" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
  "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
  "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
  "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
  "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
  "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
  "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "LRP1B MUTATED"   "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED"   "LRP1B MUTATED" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
  "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
  "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
  "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
  "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
  "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
  "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "LRP1B MUTATED"   "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED"   "LRP1B MUTATED" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
  "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
  "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
  "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
  "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
  "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
[1] "hr=" "1.4"
D24V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  LRP1B MUTATED         14       17         1         9         13          4
  LRP1B WILD-TYPE       23       36        10        14         20          2
                 vv
clus              STAGE IV
  LRP1B MUTATED          3
  LRP1B WILD-TYPE        6
D24V3, multiclass
                 vv
clus              T1 T2 T3 T4
  LRP1B MUTATED   16 35  5  5
  LRP1B WILD-TYPE 25 74  9  3
D24V4, multiclass
    clus
vv   LRP1B MUTATED LRP1B WILD-TYPE
  T1            16              25
  T2            35              74
  T3             5               9
  T4             5               3
                 vv
clus              N0 N1 N2+N3
  LRP1B MUTATED   35 10    16
  LRP1B WILD-TYPE 60 27    19
D24V5, multiclass
       clus
vv      LRP1B MUTATED LRP1B WILD-TYPE
  N0               35              60
  N1               10              27
  N2+N3            16              19
                 vv
clus              M0 M1 MX
  LRP1B MUTATED   54  3  4
  LRP1B WILD-TYPE 89  6 14
D24V6, multiclass
    clus
vv   LRP1B MUTATED LRP1B WILD-TYPE
  M0            54              89
  M1             3               6
  MX             4              14
D24V7, binary
                 cls
clus               0  1
  LRP1B MUTATED   29 32
  LRP1B WILD-TYPE 64 47
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRP1B MUTATED     29   32
  LRP1B WILD-TYPE   64   47
        clus
vv       LRP1B MUTATED LRP1B WILD-TYPE
  FEMALE            29              64
  MALE              32              47
D24V8, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  LRP1B MUTATED                            0                                15
  LRP1B WILD-TYPE                          2                                24
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  LRP1B MUTATED                                                   40
  LRP1B WILD-TYPE                                                 75
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  LRP1B MUTATED                                            0
  LRP1B WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  LRP1B MUTATED                                               1
  LRP1B WILD-TYPE                                             1
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  LRP1B MUTATED                                1
  LRP1B WILD-TYPE                              1
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  LRP1B MUTATED                                    1
  LRP1B WILD-TYPE                                  1
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  LRP1B MUTATED                              0                             1
  LRP1B WILD-TYPE                            2                             3
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  LRP1B MUTATED                                               1
  LRP1B WILD-TYPE                                             0
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  LRP1B MUTATED                              1
  LRP1B WILD-TYPE                            1
D24V9, multiclass
D24V10, binary
                 cls
clus                0   1
  LRP1B MUTATED     4  57
  LRP1B WILD-TYPE  10 101
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRP1B MUTATED      4   57
  LRP1B WILD-TYPE   10  101
     clus
vv    LRP1B MUTATED LRP1B WILD-TYPE
  NO              4              10
  YES            57             101
D24V11, continuous
D24V12, continuous
                 vv
clus              R0 R1 R2 RX
  LRP1B MUTATED   47  1  1  1
  LRP1B WILD-TYPE 68  5  3  8
D24V13, multiclass
    clus
vv   LRP1B MUTATED LRP1B WILD-TYPE
  R0            47              68
  R1             1               5
  R2             1               3
  RX             1               8

Clustering(25) Variable = RIT1 MUTATION ANALYSIS
D25V1, survival
                sevent
clus2             0  1
  RIT1 MUTATED    6  2
  RIT1 WILD-TYPE 93 54
  RIT1 MUTATED RIT1 WILD-TYPE 
             8            147 
  RIT1 MUTATED RIT1 WILD-TYPE 
             2             54 
$`RIT1 MUTATED`
TCGA-05-4384 TCGA-05-4396 TCGA-44-6779 TCGA-49-4514 TCGA-55-1596 TCGA-73-4666 
       14.01         9.96        16.41        55.89        45.17        26.27 
TCGA-73-4675 TCGA-91-6836 
        1.32        13.71 

$`RIT1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4389 TCGA-05-4390 TCGA-05-4397 
       50.07         3.98        19.92        45.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        4.96        28.96        22.03         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61        14.73 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       21.93        46.98        13.15        44.94        24.36        42.08 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       42.77         3.19         8.09        37.15        38.24        23.51 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21        23.74        13.71        12.59        13.38        10.78 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93        27.78        11.90         5.42        12.16        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       32.45        36.49        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
        5.16        15.02        12.13        29.26        17.13        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        70.55        14.96        25.81        31.04        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12        18.64        29.00        25.12        22.55 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 
       33.37        23.05        38.73        48.62         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       87.98         2.04        42.90        28.41        51.25        28.44 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99        20.02        18.84        14.04        12.66         5.69 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        4.60        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 
       15.35         4.27         5.39         1.25        12.36        10.62 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
       41.33        10.16         2.60 

  RIT1 MUTATED RIT1 WILD-TYPE 
          1.32           0.07 
  RIT1 MUTATED RIT1 WILD-TYPE 
         55.89         120.79 
  RIT1 MUTATED RIT1 WILD-TYPE 
         15.21          21.47 
[1] "1.3 - 55.9 (15.2)"  "0.1 - 120.8 (21.5)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
  "RIT1 MUTATED" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
  "RIT1 MUTATED" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
  "RIT1 MUTATED" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" "RIT1 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE"   "RIT1 MUTATED" 
[1] "hr=" "1.4"
D25V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  RIT1 MUTATED          1        1         0         2          2          1
  RIT1 WILD-TYPE       36       52        11        21         31          5
                vv
clus             STAGE IV
  RIT1 MUTATED          1
  RIT1 WILD-TYPE        8
D25V3, multiclass
                vv
clus              T1  T2  T3  T4
  RIT1 MUTATED     2   4   1   1
  RIT1 WILD-TYPE  39 105  13   7
D25V4, multiclass
    clus
vv   RIT1 MUTATED RIT1 WILD-TYPE
  T1            2             39
  T2            4            105
  T3            1             13
  T4            1              7
                vv
clus             N0 N1 N2+N3
  RIT1 MUTATED    3  4     1
  RIT1 WILD-TYPE 92 33    34
D25V5, multiclass
       clus
vv      RIT1 MUTATED RIT1 WILD-TYPE
  N0               3             92
  N1               4             33
  N2+N3            1             34
                vv
clus              M0  M1  MX
  RIT1 MUTATED     5   1   2
  RIT1 WILD-TYPE 138   8  16
D25V6, multiclass
    clus
vv   RIT1 MUTATED RIT1 WILD-TYPE
  M0            5            138
  M1            1              8
  MX            2             16
D25V7, binary
                cls
clus              0  1
  RIT1 MUTATED    4  4
  RIT1 WILD-TYPE 89 75
[1] "tbl2"
                cls
clus             [,1] [,2]
  RIT1 MUTATED      4    4
  RIT1 WILD-TYPE   89   75
        clus
vv       RIT1 MUTATED RIT1 WILD-TYPE
  FEMALE            4             89
  MALE              4             75
D25V8, continuous
[1] "Remove cluster labels:" "RIT1 MUTATED"          
clus
  RIT1 MUTATED RIT1 WILD-TYPE 
             1             11 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-64-1677 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-64-5778     TCGA-71-6725     TCGA-73-4659     TCGA-73-4662 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4676     TCGA-75-5122 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  RIT1 MUTATED                            0                                 2
  RIT1 WILD-TYPE                          2                                37
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  RIT1 MUTATED                                                    5
  RIT1 WILD-TYPE                                                110
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  RIT1 MUTATED                                            0
  RIT1 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  RIT1 MUTATED                                               0
  RIT1 WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  RIT1 MUTATED                                0
  RIT1 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  RIT1 MUTATED                                    0
  RIT1 WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  RIT1 MUTATED                              0                             1
  RIT1 WILD-TYPE                            2                             3
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  RIT1 MUTATED                                               0
  RIT1 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  RIT1 MUTATED                              0
  RIT1 WILD-TYPE                            2
D25V9, multiclass
D25V10, binary
                cls
clus               0   1
  RIT1 MUTATED     1   7
  RIT1 WILD-TYPE  13 151
[1] "tbl2"
                cls
clus             [,1] [,2]
  RIT1 MUTATED      1    7
  RIT1 WILD-TYPE   13  151
     clus
vv    RIT1 MUTATED RIT1 WILD-TYPE
  NO             1             13
  YES            7            151
D25V11, continuous
D25V12, continuous
                vv
clus              R0  R1  R2  RX
  RIT1 MUTATED     4   0   0   2
  RIT1 WILD-TYPE 111   6   4   7
D25V13, multiclass
    clus
vv   RIT1 MUTATED RIT1 WILD-TYPE
  R0            4            111
  R1            0              6
  R2            0              4
  RX            2              7

Clustering(26) Variable = OR10J3 MUTATION ANALYSIS
D26V1, survival
                  sevent
clus2               0  1
  OR10J3 MUTATED    6  3
  OR10J3 WILD-TYPE 93 53
  OR10J3 MUTATED OR10J3 WILD-TYPE 
               9              146 
  OR10J3 MUTATED OR10J3 WILD-TYPE 
               3               53 
$`OR10J3 MUTATED`
TCGA-05-4249 TCGA-05-4396 TCGA-05-4420 TCGA-05-5423 TCGA-44-3918 TCGA-44-6145 
       50.07         9.96        29.95         4.96        23.51        10.78 
TCGA-50-5935 TCGA-64-5781 TCGA-73-4677 
       21.47        51.25         1.25 

$`OR10J3 WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4397 
        3.98        19.92        14.01        45.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
        8.98        12.00        30.02        21.99        26.01        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 
       25.02        25.02        24.00        15.02        15.02        28.96 
TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
       22.03         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        97.74       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61        14.73        21.93        46.98 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        44.94        24.36        42.08        42.77         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
        8.09        37.15        38.24         6.21        23.74        13.71 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
       12.59        13.38         9.93        27.78        11.90         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
       12.16        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46         5.16        55.89        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        29.26        17.13        20.48        71.47        70.55 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81        31.04        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
        8.78        35.87        77.88         8.45        15.12        18.64 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
       29.00        25.12        22.55        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        87.98         2.04 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       42.90        28.41        28.44         0.99        20.02        18.84 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
       14.04        12.66         5.69         4.60        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        26.27        15.35         4.27 
TCGA-73-4675 TCGA-73-4676 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         5.39        12.36        10.62        41.33        10.16 
TCGA-91-6835 TCGA-91-6836 
        2.60        13.71 

  OR10J3 MUTATED OR10J3 WILD-TYPE 
            1.25             0.07 
  OR10J3 MUTATED OR10J3 WILD-TYPE 
           51.25           120.79 
  OR10J3 MUTATED OR10J3 WILD-TYPE 
          21.470           20.565 
[1] "1.2 - 51.2 (21.5)"  "0.1 - 120.8 (20.6)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
  "OR10J3 MUTATED" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE"   "OR10J3 MUTATED" "OR10J3 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE"   "OR10J3 MUTATED" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE"   "OR10J3 MUTATED" "OR10J3 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE"   "OR10J3 MUTATED" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"OR10J3 WILD-TYPE"   "OR10J3 MUTATED" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE"   "OR10J3 MUTATED" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"OR10J3 WILD-TYPE"   "OR10J3 MUTATED" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
  "OR10J3 MUTATED" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
  "OR10J3 MUTATED" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE"   "OR10J3 MUTATED" "OR10J3 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE"   "OR10J3 MUTATED" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE"   "OR10J3 MUTATED" "OR10J3 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE"   "OR10J3 MUTATED" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"OR10J3 WILD-TYPE"   "OR10J3 MUTATED" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE"   "OR10J3 MUTATED" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"OR10J3 WILD-TYPE"   "OR10J3 MUTATED" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
  "OR10J3 MUTATED" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
  "OR10J3 MUTATED" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE"   "OR10J3 MUTATED" "OR10J3 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE"   "OR10J3 MUTATED" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE"   "OR10J3 MUTATED" "OR10J3 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE"   "OR10J3 MUTATED" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"OR10J3 WILD-TYPE"   "OR10J3 MUTATED" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE"   "OR10J3 MUTATED" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"OR10J3 WILD-TYPE"   "OR10J3 MUTATED" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
  "OR10J3 MUTATED" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
[1] "hr=" "1"  
D26V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  OR10J3 MUTATED          4        3         0         1          0          1
  OR10J3 WILD-TYPE       33       50        11        22         33          5
                  vv
clus               STAGE IV
  OR10J3 MUTATED          0
  OR10J3 WILD-TYPE        9
D26V3, multiclass
                  vv
clus                T1  T2  T3  T4
  OR10J3 MUTATED     3   5   0   1
  OR10J3 WILD-TYPE  38 104  14   7
D26V4, multiclass
    clus
vv   OR10J3 MUTATED OR10J3 WILD-TYPE
  T1              3               38
  T2              5              104
  T3              0               14
  T4              1                7
                  vv
clus               N0 N1 N2+N3
  OR10J3 MUTATED    7  2     0
  OR10J3 WILD-TYPE 88 35    35
D26V5, multiclass
       clus
vv      OR10J3 MUTATED OR10J3 WILD-TYPE
  N0                 7               88
  N1                 2               35
  N2+N3              0               35
                  vv
clus                M0  M1  MX
  OR10J3 MUTATED     9   0   0
  OR10J3 WILD-TYPE 134   9  18
D26V6, multiclass
    clus
vv   OR10J3 MUTATED OR10J3 WILD-TYPE
  M0              9              134
  M1              0                9
  MX              0               18
D26V7, binary
                  cls
clus                0  1
  OR10J3 MUTATED    4  5
  OR10J3 WILD-TYPE 89 74
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10J3 MUTATED      4    5
  OR10J3 WILD-TYPE   89   74
        clus
vv       OR10J3 MUTATED OR10J3 WILD-TYPE
  FEMALE              4               89
  MALE                5               74
D26V8, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR10J3 MUTATED                            0                                 4
  OR10J3 WILD-TYPE                          2                                35
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR10J3 MUTATED                                                    5
  OR10J3 WILD-TYPE                                                110
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR10J3 MUTATED                                            0
  OR10J3 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR10J3 MUTATED                                               0
  OR10J3 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  OR10J3 MUTATED                                0
  OR10J3 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  OR10J3 MUTATED                                    0
  OR10J3 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR10J3 MUTATED                              0                             0
  OR10J3 WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR10J3 MUTATED                                               0
  OR10J3 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  OR10J3 MUTATED                              0
  OR10J3 WILD-TYPE                            2
D26V9, multiclass
D26V10, binary
                  cls
clus                 0   1
  OR10J3 MUTATED     1   8
  OR10J3 WILD-TYPE  13 150
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10J3 MUTATED      1    8
  OR10J3 WILD-TYPE   13  150
     clus
vv    OR10J3 MUTATED OR10J3 WILD-TYPE
  NO               1               13
  YES              8              150
D26V11, continuous
D26V12, continuous
                  vv
clus                R0  R1  R2  RX
  OR10J3 MUTATED     7   0   0   0
  OR10J3 WILD-TYPE 108   6   4   9
D26V13, multiclass
    clus
vv   OR10J3 MUTATED OR10J3 WILD-TYPE
  R0              7              108
  R1              0                6
  R2              0                4
  RX              0                9

Clustering(27) Variable = LTBP1 MUTATION ANALYSIS
D27V1, survival
                 sevent
clus2              0  1
  LTBP1 MUTATED   12  5
  LTBP1 WILD-TYPE 87 51
  LTBP1 MUTATED LTBP1 WILD-TYPE 
             17             138 
  LTBP1 MUTATED LTBP1 WILD-TYPE 
              5              51 
$`LTBP1 MUTATED`
TCGA-05-4390 TCGA-05-4396 TCGA-05-4427 TCGA-05-4432 TCGA-35-4123 TCGA-38-4625 
       37.02         9.96        26.01        25.02         5.95        97.74 
TCGA-38-4632 TCGA-44-2655 TCGA-44-2656 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
       44.61        21.93        46.98        32.45        36.49        16.41 
TCGA-49-4488 TCGA-55-1595 TCGA-64-5781 TCGA-67-3771 TCGA-67-3773 
       28.57        48.62        51.25        20.02        14.04 

$`LTBP1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4397 
       50.07         3.98        19.92        14.01        45.01        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02        15.02         4.96        28.96 
TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 
       22.03         0.99         2.04         0.46         7.36         8.68 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
      120.79        37.71        49.02        28.37        35.28        11.64 
TCGA-38-6178 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       14.73        13.15        44.94        24.36        42.08        42.77 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        37.15        38.24        23.51         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
       23.74        13.71        12.59        13.38        10.78         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-49-4486 
       27.78        11.90         5.42        12.16        63.72        76.21 
TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.11        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46         5.16        55.89        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       29.26        17.13        20.48        71.47        70.55        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81        31.04        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12        18.64 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
       29.00        25.12        22.55        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        87.98         2.04        42.90 
TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3774 TCGA-67-6215 
       28.41        28.44         0.99        18.84        12.66         5.69 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        4.60        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       26.27        15.35         4.27         1.32         5.39         1.25 
TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       12.36        10.62        41.33        10.16         2.60        13.71 

  LTBP1 MUTATED LTBP1 WILD-TYPE 
           5.95            0.07 
  LTBP1 MUTATED LTBP1 WILD-TYPE 
          97.74          120.79 
  LTBP1 MUTATED LTBP1 WILD-TYPE 
          28.57           19.46 
[1] "6.0 - 97.7 (28.6)"  "0.1 - 120.8 (19.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"LTBP1 WILD-TYPE"   "LTBP1 MUTATED"   "LTBP1 MUTATED" "LTBP1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "LTBP1 MUTATED" "LTBP1 WILD-TYPE"   "LTBP1 MUTATED" "LTBP1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"LTBP1 WILD-TYPE"   "LTBP1 MUTATED" "LTBP1 WILD-TYPE"   "LTBP1 MUTATED" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE"   "LTBP1 MUTATED" "LTBP1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
  "LTBP1 MUTATED"   "LTBP1 MUTATED" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
  "LTBP1 MUTATED"   "LTBP1 MUTATED"   "LTBP1 MUTATED" "LTBP1 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"LTBP1 WILD-TYPE"   "LTBP1 MUTATED" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE"   "LTBP1 MUTATED" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"LTBP1 WILD-TYPE"   "LTBP1 MUTATED" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "LTBP1 MUTATED" "LTBP1 WILD-TYPE"   "LTBP1 MUTATED" "LTBP1 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"LTBP1 WILD-TYPE"   "LTBP1 MUTATED"   "LTBP1 MUTATED" "LTBP1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "LTBP1 MUTATED" "LTBP1 WILD-TYPE"   "LTBP1 MUTATED" "LTBP1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"LTBP1 WILD-TYPE"   "LTBP1 MUTATED" "LTBP1 WILD-TYPE"   "LTBP1 MUTATED" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE"   "LTBP1 MUTATED" "LTBP1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
  "LTBP1 MUTATED"   "LTBP1 MUTATED" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
  "LTBP1 MUTATED"   "LTBP1 MUTATED"   "LTBP1 MUTATED" "LTBP1 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"LTBP1 WILD-TYPE"   "LTBP1 MUTATED" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE"   "LTBP1 MUTATED" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"LTBP1 WILD-TYPE"   "LTBP1 MUTATED" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "LTBP1 MUTATED" "LTBP1 WILD-TYPE"   "LTBP1 MUTATED" "LTBP1 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"LTBP1 WILD-TYPE"   "LTBP1 MUTATED"   "LTBP1 MUTATED" "LTBP1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "LTBP1 MUTATED" "LTBP1 WILD-TYPE"   "LTBP1 MUTATED" "LTBP1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"LTBP1 WILD-TYPE"   "LTBP1 MUTATED" "LTBP1 WILD-TYPE"   "LTBP1 MUTATED" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE"   "LTBP1 MUTATED" "LTBP1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
  "LTBP1 MUTATED"   "LTBP1 MUTATED" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
  "LTBP1 MUTATED"   "LTBP1 MUTATED"   "LTBP1 MUTATED" "LTBP1 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"LTBP1 WILD-TYPE"   "LTBP1 MUTATED" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE"   "LTBP1 MUTATED" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"LTBP1 WILD-TYPE"   "LTBP1 MUTATED" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "LTBP1 MUTATED" "LTBP1 WILD-TYPE"   "LTBP1 MUTATED" "LTBP1 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
[1] "hr=" "1.8"
D27V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  LTBP1 MUTATED          6        8         0         4          0          1
  LTBP1 WILD-TYPE       31       45        11        19         33          5
                 vv
clus              STAGE IV
  LTBP1 MUTATED          1
  LTBP1 WILD-TYPE        8
D27V3, multiclass
                 vv
clus              T1 T2 T3 T4
  LTBP1 MUTATED    6 11  2  1
  LTBP1 WILD-TYPE 35 98 12  7
D27V4, multiclass
    clus
vv   LTBP1 MUTATED LTBP1 WILD-TYPE
  T1             6              35
  T2            11              98
  T3             2              12
  T4             1               7
                 vv
clus              N0 N1 N2+N3
  LTBP1 MUTATED   14  5     0
  LTBP1 WILD-TYPE 81 32    35
D27V5, multiclass
       clus
vv      LTBP1 MUTATED LTBP1 WILD-TYPE
  N0               14              81
  N1                5              32
  N2+N3             0              35
                 vv
clus               M0  M1  MX
  LTBP1 MUTATED    14   1   5
  LTBP1 WILD-TYPE 129   8  13
D27V6, multiclass
    clus
vv   LTBP1 MUTATED LTBP1 WILD-TYPE
  M0            14             129
  M1             1               8
  MX             5              13
D27V7, binary
                 cls
clus               0  1
  LTBP1 MUTATED   12  8
  LTBP1 WILD-TYPE 81 71
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LTBP1 MUTATED     12    8
  LTBP1 WILD-TYPE   81   71
        clus
vv       LTBP1 MUTATED LTBP1 WILD-TYPE
  FEMALE            12              81
  MALE               8              71
D27V8, continuous
[1] "Remove cluster labels:" "LTBP1 MUTATED"         
clus
  LTBP1 MUTATED LTBP1 WILD-TYPE 
              2              10 
     TCGA-35-4122      TCGA-35-5375      TCGA-64-1677      TCGA-64-5778 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676 
"LTBP1 WILD-TYPE" "LTBP1 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  LTBP1 MUTATED                            0                                 5
  LTBP1 WILD-TYPE                          2                                34
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  LTBP1 MUTATED                                                   14
  LTBP1 WILD-TYPE                                                101
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  LTBP1 MUTATED                                            0
  LTBP1 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  LTBP1 MUTATED                                               0
  LTBP1 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  LTBP1 MUTATED                                1
  LTBP1 WILD-TYPE                              1
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  LTBP1 MUTATED                                    0
  LTBP1 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  LTBP1 MUTATED                              0                             0
  LTBP1 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  LTBP1 MUTATED                                               0
  LTBP1 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  LTBP1 MUTATED                              0
  LTBP1 WILD-TYPE                            2
D27V9, multiclass
D27V10, binary
                 cls
clus                0   1
  LTBP1 MUTATED     1  19
  LTBP1 WILD-TYPE  13 139
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LTBP1 MUTATED      1   19
  LTBP1 WILD-TYPE   13  139
     clus
vv    LTBP1 MUTATED LTBP1 WILD-TYPE
  NO              1              13
  YES            19             139
D27V11, continuous
D27V12, continuous
                 vv
clus               R0  R1  R2  RX
  LTBP1 MUTATED    15   0   0   0
  LTBP1 WILD-TYPE 100   6   4   9
D27V13, multiclass
    clus
vv   LTBP1 MUTATED LTBP1 WILD-TYPE
  R0            15             100
  R1             0               6
  R2             0               4
  RX             0               9

Clustering(28) Variable = SETD2 MUTATION ANALYSIS
D28V1, survival
                 sevent
clus2              0  1
  SETD2 MUTATED    8  6
  SETD2 WILD-TYPE 91 50
  SETD2 MUTATED SETD2 WILD-TYPE 
             14             141 
  SETD2 MUTATED SETD2 WILD-TYPE 
              6              50 
$`SETD2 MUTATED`
TCGA-05-4396 TCGA-05-4425 TCGA-05-4427 TCGA-38-4631 TCGA-44-2666 TCGA-49-4487 
        9.96        21.99        26.01        11.64         3.19        28.11 
TCGA-49-6744 TCGA-50-5941 TCGA-50-5942 TCGA-64-5775 TCGA-67-6216 TCGA-73-4658 
       29.26        18.64        29.00         2.04         4.60        52.57 
TCGA-73-4666 TCGA-73-4676 
       26.27         5.39 

$`SETD2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4426 
       14.93         8.98        29.95        12.00        30.02        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02        15.02         4.96 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
       28.96        22.03         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        97.74       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       28.37        35.28        44.61        14.73        21.93        46.98 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2668 
       13.15        44.94        24.36        42.08        42.77         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       37.15        38.24        23.51         6.21        23.74        13.71 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
       12.59        13.38        10.78         9.93        27.78        11.90 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42        12.16        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       76.21        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46         5.16        55.89        15.02 
TCGA-49-6743 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.13        17.13        20.48        71.47        70.55        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81        31.04        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5944 
       35.87        77.88        21.47         8.45        15.12        25.12 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       22.55        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       39.09        37.02        87.98        42.90        28.41        51.25 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       28.44         0.99        20.02        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6217 TCGA-71-6725 TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 
        5.69        13.87         2.01        23.38        29.95        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 
        4.27         1.32         1.25        12.36        10.62        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       10.16         2.60        13.71 

  SETD2 MUTATED SETD2 WILD-TYPE 
           2.04            0.07 
  SETD2 MUTATED SETD2 WILD-TYPE 
          52.57          120.79 
  SETD2 MUTATED SETD2 WILD-TYPE 
         20.315          20.650 
[1] "2.0 - 52.6 (20.3)"  "0.1 - 120.8 (20.6)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED" "SETD2 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED" "SETD2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "SETD2 MUTATED" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"SETD2 WILD-TYPE"   "SETD2 MUTATED" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
  "SETD2 MUTATED" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"SETD2 WILD-TYPE"   "SETD2 MUTATED" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED"   "SETD2 MUTATED" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED" "SETD2 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"SETD2 WILD-TYPE"   "SETD2 MUTATED" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
  "SETD2 MUTATED" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED" "SETD2 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED" "SETD2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "SETD2 MUTATED" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"SETD2 WILD-TYPE"   "SETD2 MUTATED" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
  "SETD2 MUTATED" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"SETD2 WILD-TYPE"   "SETD2 MUTATED" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED"   "SETD2 MUTATED" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED" "SETD2 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"SETD2 WILD-TYPE"   "SETD2 MUTATED" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
  "SETD2 MUTATED" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED" "SETD2 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED" "SETD2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "SETD2 MUTATED" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"SETD2 WILD-TYPE"   "SETD2 MUTATED" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
  "SETD2 MUTATED" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"SETD2 WILD-TYPE"   "SETD2 MUTATED" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED"   "SETD2 MUTATED" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED" "SETD2 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"SETD2 WILD-TYPE"   "SETD2 MUTATED" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
  "SETD2 MUTATED" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE"   "SETD2 MUTATED" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
[1] "hr=" "1.7"
D28V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  SETD2 MUTATED          3        3         2         1          3          1
  SETD2 WILD-TYPE       34       50         9        22         30          5
                 vv
clus              STAGE IV
  SETD2 MUTATED          2
  SETD2 WILD-TYPE        7
D28V3, multiclass
                 vv
clus               T1  T2  T3  T4
  SETD2 MUTATED     4   8   1   2
  SETD2 WILD-TYPE  37 101  13   6
D28V4, multiclass
    clus
vv   SETD2 MUTATED SETD2 WILD-TYPE
  T1             4              37
  T2             8             101
  T3             1              13
  T4             2               6
                 vv
clus              N0 N1 N2+N3
  SETD2 MUTATED    9  4     2
  SETD2 WILD-TYPE 86 33    33
D28V5, multiclass
       clus
vv      SETD2 MUTATED SETD2 WILD-TYPE
  N0                9              86
  N1                4              33
  N2+N3             2              33
                 vv
clus               M0  M1  MX
  SETD2 MUTATED    12   2   1
  SETD2 WILD-TYPE 131   7  17
D28V6, multiclass
    clus
vv   SETD2 MUTATED SETD2 WILD-TYPE
  M0            12             131
  M1             2               7
  MX             1              17
D28V7, binary
                 cls
clus               0  1
  SETD2 MUTATED   11  4
  SETD2 WILD-TYPE 82 75
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SETD2 MUTATED     11    4
  SETD2 WILD-TYPE   82   75
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  FEMALE            11              82
  MALE               4              75
D28V8, continuous
[1] "Remove cluster labels:" "SETD2 MUTATED"         
clus
  SETD2 MUTATED SETD2 WILD-TYPE 
              2              10 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-73-4668      TCGA-75-5122 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  SETD2 MUTATED                            0                                 4
  SETD2 WILD-TYPE                          2                                35
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SETD2 MUTATED                                                   10
  SETD2 WILD-TYPE                                                105
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  SETD2 MUTATED                                            0
  SETD2 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  SETD2 MUTATED                                               0
  SETD2 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  SETD2 MUTATED                                0
  SETD2 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  SETD2 MUTATED                                    0
  SETD2 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  SETD2 MUTATED                              0                             1
  SETD2 WILD-TYPE                            2                             3
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  SETD2 MUTATED                                               0
  SETD2 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  SETD2 MUTATED                              0
  SETD2 WILD-TYPE                            2
D28V9, multiclass
D28V10, binary
                 cls
clus                0   1
  SETD2 MUTATED     3  12
  SETD2 WILD-TYPE  11 146
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SETD2 MUTATED      3   12
  SETD2 WILD-TYPE   11  146
     clus
vv    SETD2 MUTATED SETD2 WILD-TYPE
  NO              3              11
  YES            12             146
D28V11, continuous
D28V12, continuous
                 vv
clus               R0  R1  R2  RX
  SETD2 MUTATED    12   1   1   0
  SETD2 WILD-TYPE 103   5   3   9
D28V13, multiclass
    clus
vv   SETD2 MUTATED SETD2 WILD-TYPE
  R0            12             103
  R1             1               5
  R2             1               3
  RX             0               9

Clustering(29) Variable = ZCCHC5 MUTATION ANALYSIS
D29V1, survival
                  sevent
clus2               0  1
  ZCCHC5 MUTATED    6  2
  ZCCHC5 WILD-TYPE 93 54
  ZCCHC5 MUTATED ZCCHC5 WILD-TYPE 
               8              147 
  ZCCHC5 MUTATED ZCCHC5 WILD-TYPE 
               2               54 
$`ZCCHC5 MUTATED`
TCGA-05-4390 TCGA-05-4396 TCGA-05-4405 TCGA-05-4430 TCGA-05-5423 TCGA-38-4626 
       37.02         9.96        20.05        25.02         4.96       120.79 
TCGA-44-3396 TCGA-50-6590 
       37.15        42.31 

$`ZCCHC5 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4397 
       50.07         3.98        19.92        14.01        45.01        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        19.00         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
       29.95        12.00        30.02        21.99        26.01        26.01 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5428 
       25.02        24.00        15.02        15.02        28.96        22.03 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       97.74        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61        14.73        21.93        46.98        13.15        44.94 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3398 
       24.36        42.08        42.77         3.19         8.09        38.24 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
       23.51         6.21        23.74        13.71        12.59        13.38 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
       10.78         9.93        27.78        11.90         5.42        12.16 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46         5.16        55.89        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       29.26        17.13        20.48        71.47        70.55        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81        31.04        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12        18.64 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       29.00        25.12        22.55         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        87.98         2.04        42.90 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       28.41        51.25        28.44         0.99        20.02        18.84 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
       14.04        12.66         5.69         4.60        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        26.27        15.35         4.27 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 
        1.32         5.39         1.25        12.36        10.62        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       10.16         2.60        13.71 

  ZCCHC5 MUTATED ZCCHC5 WILD-TYPE 
            4.96             0.07 
  ZCCHC5 MUTATED ZCCHC5 WILD-TYPE 
          120.79            97.74 
  ZCCHC5 MUTATED ZCCHC5 WILD-TYPE 
           31.02            20.48 
[1] "5.0 - 120.8 (31.0)" "0.1 - 97.7 (20.5)" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"ZCCHC5 WILD-TYPE"   "ZCCHC5 MUTATED"   "ZCCHC5 MUTATED" "ZCCHC5 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE"   "ZCCHC5 MUTATED" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZCCHC5 WILD-TYPE"   "ZCCHC5 MUTATED" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE"   "ZCCHC5 MUTATED" "ZCCHC5 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
  "ZCCHC5 MUTATED" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"ZCCHC5 WILD-TYPE"   "ZCCHC5 MUTATED" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE"   "ZCCHC5 MUTATED" "ZCCHC5 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"ZCCHC5 WILD-TYPE"   "ZCCHC5 MUTATED"   "ZCCHC5 MUTATED" "ZCCHC5 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE"   "ZCCHC5 MUTATED" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZCCHC5 WILD-TYPE"   "ZCCHC5 MUTATED" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE"   "ZCCHC5 MUTATED" "ZCCHC5 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
  "ZCCHC5 MUTATED" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"ZCCHC5 WILD-TYPE"   "ZCCHC5 MUTATED" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE"   "ZCCHC5 MUTATED" "ZCCHC5 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"ZCCHC5 WILD-TYPE"   "ZCCHC5 MUTATED"   "ZCCHC5 MUTATED" "ZCCHC5 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE"   "ZCCHC5 MUTATED" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZCCHC5 WILD-TYPE"   "ZCCHC5 MUTATED" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE"   "ZCCHC5 MUTATED" "ZCCHC5 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
  "ZCCHC5 MUTATED" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"ZCCHC5 WILD-TYPE"   "ZCCHC5 MUTATED" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE"   "ZCCHC5 MUTATED" "ZCCHC5 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" "ZCCHC5 WILD-TYPE" 
[1] "hr=" "2.2"
D29V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  ZCCHC5 MUTATED          0        6         1         1          1          1
  ZCCHC5 WILD-TYPE       37       47        10        22         32          5
                  vv
clus               STAGE IV
  ZCCHC5 MUTATED          0
  ZCCHC5 WILD-TYPE        9
D29V3, multiclass
                  vv
clus                T1  T2  T3  T4
  ZCCHC5 MUTATED     0   9   0   1
  ZCCHC5 WILD-TYPE  41 100  14   7
D29V4, multiclass
    clus
vv   ZCCHC5 MUTATED ZCCHC5 WILD-TYPE
  T1              0               41
  T2              9              100
  T3              0               14
  T4              1                7
                  vv
clus               N0 N1 N2+N3
  ZCCHC5 MUTATED    7  2     1
  ZCCHC5 WILD-TYPE 88 35    34
D29V5, multiclass
       clus
vv      ZCCHC5 MUTATED ZCCHC5 WILD-TYPE
  N0                 7               88
  N1                 2               35
  N2+N3              1               34
                  vv
clus                M0  M1  MX
  ZCCHC5 MUTATED    10   0   0
  ZCCHC5 WILD-TYPE 133   9  18
D29V6, multiclass
    clus
vv   ZCCHC5 MUTATED ZCCHC5 WILD-TYPE
  M0             10              133
  M1              0                9
  MX              0               18
D29V7, binary
                  cls
clus                0  1
  ZCCHC5 MUTATED    7  3
  ZCCHC5 WILD-TYPE 86 76
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZCCHC5 MUTATED      7    3
  ZCCHC5 WILD-TYPE   86   76
        clus
vv       ZCCHC5 MUTATED ZCCHC5 WILD-TYPE
  FEMALE              7               86
  MALE                3               76
D29V8, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  ZCCHC5 MUTATED                            0                                 5
  ZCCHC5 WILD-TYPE                          2                                34
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ZCCHC5 MUTATED                                                    5
  ZCCHC5 WILD-TYPE                                                110
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  ZCCHC5 MUTATED                                            0
  ZCCHC5 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  ZCCHC5 MUTATED                                               0
  ZCCHC5 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  ZCCHC5 MUTATED                                0
  ZCCHC5 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  ZCCHC5 MUTATED                                    0
  ZCCHC5 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  ZCCHC5 MUTATED                              0                             0
  ZCCHC5 WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  ZCCHC5 MUTATED                                               0
  ZCCHC5 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  ZCCHC5 MUTATED                              0
  ZCCHC5 WILD-TYPE                            2
D29V9, multiclass
D29V10, binary
                  cls
clus                 0   1
  ZCCHC5 MUTATED     0  10
  ZCCHC5 WILD-TYPE  14 148
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZCCHC5 MUTATED      0   10
  ZCCHC5 WILD-TYPE   14  148
     clus
vv    ZCCHC5 MUTATED ZCCHC5 WILD-TYPE
  NO               0               14
  YES             10              148
D29V11, continuous
D29V12, continuous
                  vv
clus                R0  R1  R2  RX
  ZCCHC5 MUTATED     9   0   0   0
  ZCCHC5 WILD-TYPE 106   6   4   9
D29V13, multiclass
    clus
vv   ZCCHC5 MUTATED ZCCHC5 WILD-TYPE
  R0              9              106
  R1              0                6
  R2              0                4
  RX              0                9

Clustering(30) Variable = ADAMTS5 MUTATION ANALYSIS
D30V1, survival
                   sevent
clus2                0  1
  ADAMTS5 MUTATED   12  1
  ADAMTS5 WILD-TYPE 87 55
  ADAMTS5 MUTATED ADAMTS5 WILD-TYPE 
               13               142 
  ADAMTS5 MUTATED ADAMTS5 WILD-TYPE 
                1                55 
$`ADAMTS5 MUTATED`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4390 TCGA-05-4396 TCGA-05-4398 TCGA-38-4626 
       50.07        19.92        37.02         9.96        47.05       120.79 
TCGA-44-2659 TCGA-50-5049 TCGA-64-1678 TCGA-64-5774 TCGA-67-6217 TCGA-73-4662 
       44.94        70.55        39.09        87.98        13.87        29.95 
TCGA-73-4666 
       26.27 

$`ADAMTS5 WILD-TYPE`
TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4397 TCGA-05-4402 TCGA-05-4403 
        3.98        14.01        45.01        24.03         8.02        19.00 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 
       20.05         2.96        14.93         8.98        29.95        12.00 
TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       30.02        21.99        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 
       24.00        15.02        15.02         4.96        28.96        22.03 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       97.74        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 
       44.61        14.73        21.93        46.98        13.15        24.36 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       42.08        42.77         3.19         8.09        37.15        38.24 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
       23.51         6.21        23.74        13.71        12.59        13.38 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
       10.78         9.93        27.78        11.90         5.42        12.16 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46         5.16        55.89        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 
       29.26        17.13        20.48        71.47        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       31.04        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12        18.64        29.00 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       25.12        22.55        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1680 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       20.65        37.02         2.04        42.90        28.41        51.25 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       28.44         0.99        20.02        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4668 
        5.69         4.60         2.01        52.57        23.38        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 
        4.27         1.32         5.39         1.25        12.36        10.62 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33        10.16         2.60        13.71 

  ADAMTS5 MUTATED ADAMTS5 WILD-TYPE 
             9.96              0.07 
  ADAMTS5 MUTATED ADAMTS5 WILD-TYPE 
           120.79             97.74 
  ADAMTS5 MUTATED ADAMTS5 WILD-TYPE 
            39.09             19.51 
[1] "10.0 - 120.8 (39.1)" "0.1 - 97.7 (19.5)"  
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
  "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
  "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED"   "ADAMTS5 MUTATED" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
  "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
  "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED"   "ADAMTS5 MUTATED" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
  "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
  "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED"   "ADAMTS5 MUTATED" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
[1] "hr=" "11" 
D30V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  ADAMTS5 MUTATED          2        5         3         1          0          2
  ADAMTS5 WILD-TYPE       35       48         8        22         33          4
                   vv
clus                STAGE IV
  ADAMTS5 MUTATED          1
  ADAMTS5 WILD-TYPE        8
D30V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  ADAMTS5 MUTATED     3   9   0   2
  ADAMTS5 WILD-TYPE  38 100  14   6
D30V4, multiclass
    clus
vv   ADAMTS5 MUTATED ADAMTS5 WILD-TYPE
  T1               3                38
  T2               9               100
  T3               0                14
  T4               2                 6
                   vv
clus                N0 N1 N2+N3
  ADAMTS5 MUTATED   10  3     1
  ADAMTS5 WILD-TYPE 85 34    34
D30V5, multiclass
       clus
vv      ADAMTS5 MUTATED ADAMTS5 WILD-TYPE
  N0                 10                85
  N1                  3                34
  N2+N3               1                34
                   vv
clus                 M0  M1  MX
  ADAMTS5 MUTATED    13   1   0
  ADAMTS5 WILD-TYPE 130   8  18
D30V6, multiclass
    clus
vv   ADAMTS5 MUTATED ADAMTS5 WILD-TYPE
  M0              13               130
  M1               1                 8
  MX               0                18
D30V7, binary
                   cls
clus                 0  1
  ADAMTS5 MUTATED    8  6
  ADAMTS5 WILD-TYPE 85 73
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ADAMTS5 MUTATED      8    6
  ADAMTS5 WILD-TYPE   85   73
        clus
vv       ADAMTS5 MUTATED ADAMTS5 WILD-TYPE
  FEMALE               8                85
  MALE                 6                73
D30V8, continuous
[1] "Remove cluster labels:" "ADAMTS5 MUTATED"       
clus
  ADAMTS5 MUTATED ADAMTS5 WILD-TYPE 
                2                10 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-64-1677 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-64-5778        TCGA-71-6725        TCGA-73-4659        TCGA-73-4668 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-73-4676        TCGA-75-5122 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  ADAMTS5 MUTATED                            0
  ADAMTS5 WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  ADAMTS5 MUTATED                                   5
  ADAMTS5 WILD-TYPE                                34
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ADAMTS5 MUTATED                                                    9
  ADAMTS5 WILD-TYPE                                                106
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  ADAMTS5 MUTATED                                            0
  ADAMTS5 WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  ADAMTS5 MUTATED                                               0
  ADAMTS5 WILD-TYPE                                             2
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  ADAMTS5 MUTATED                                0
  ADAMTS5 WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  ADAMTS5 MUTATED                                    0
  ADAMTS5 WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  ADAMTS5 MUTATED                              0                             0
  ADAMTS5 WILD-TYPE                            2                             4
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  ADAMTS5 MUTATED                                               0
  ADAMTS5 WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  ADAMTS5 MUTATED                              0
  ADAMTS5 WILD-TYPE                            2
D30V9, multiclass
D30V10, binary
                   cls
clus                  0   1
  ADAMTS5 MUTATED     2  12
  ADAMTS5 WILD-TYPE  12 146
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ADAMTS5 MUTATED      2   12
  ADAMTS5 WILD-TYPE   12  146
     clus
vv    ADAMTS5 MUTATED ADAMTS5 WILD-TYPE
  NO                2                12
  YES              12               146
D30V11, continuous
D30V12, continuous
                   vv
clus                 R0  R1  R2  RX
  ADAMTS5 MUTATED    12   0   0   1
  ADAMTS5 WILD-TYPE 103   6   4   8
D30V13, multiclass
    clus
vv   ADAMTS5 MUTATED ADAMTS5 WILD-TYPE
  R0              12               103
  R1               0                 6
  R2               0                 4
  RX               1                 8

Clustering(31) Variable = GBA3 MUTATION ANALYSIS
D31V1, survival
                sevent
clus2             0  1
  GBA3 MUTATED    3  5
  GBA3 WILD-TYPE 96 51
  GBA3 MUTATED GBA3 WILD-TYPE 
             8            147 
  GBA3 MUTATED GBA3 WILD-TYPE 
             5             51 
$`GBA3 MUTATED`
TCGA-38-4631 TCGA-44-6145 TCGA-49-4514 TCGA-50-5931 TCGA-64-5778 TCGA-73-4658 
       11.64        10.78        55.89         8.78        42.90        52.57 
TCGA-73-4677 TCGA-91-6829 
        1.25        41.33 

$`GBA3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       21.99        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 
       15.02        15.02         4.96        28.96        22.03         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        97.74 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 
      120.79        37.71        49.02        28.37        35.28        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       14.73        21.93        46.98        13.15        44.94        24.36 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       42.08        42.77         3.19         8.09        37.15        38.24 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
       23.51         6.21        23.74        13.71        12.59        13.38 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93        27.78        11.90         5.42        12.16        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.46         5.16        15.02        12.13        29.26        17.13 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        70.55        14.96        25.81        31.04 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
       49.28         8.05         9.27        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12        18.64        29.00        25.12        22.55 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       37.02        87.98         2.04        28.41        51.25        28.44 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99        20.02        18.84        14.04        12.66         5.69 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
        4.60        13.87         2.01        23.38        29.95        26.27 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-86-6562 TCGA-91-6828 
       15.35         4.27         1.32         5.39        12.36        10.62 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       10.16         2.60        13.71 

  GBA3 MUTATED GBA3 WILD-TYPE 
          1.25           0.07 
  GBA3 MUTATED GBA3 WILD-TYPE 
         55.89         120.79 
  GBA3 MUTATED GBA3 WILD-TYPE 
        26.485         20.650 
[1] "1.2 - 55.9 (26.5)"  "0.1 - 120.8 (20.6)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
  "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
  "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
  "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
  "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
  "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
  "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
  "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
  "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
  "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
[1] "hr=" "1.4"
D31V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  GBA3 MUTATED          3        5         0         0          0          0
  GBA3 WILD-TYPE       34       48        11        23         33          6
                vv
clus             STAGE IV
  GBA3 MUTATED          0
  GBA3 WILD-TYPE        9
D31V3, multiclass
                vv
clus              T1  T2  T3  T4
  GBA3 MUTATED     2   6   0   0
  GBA3 WILD-TYPE  39 103  14   8
D31V4, multiclass
    clus
vv   GBA3 MUTATED GBA3 WILD-TYPE
  T1            2             39
  T2            6            103
  T3            0             14
  T4            0              8
                vv
clus             N0 N1 N2+N3
  GBA3 MUTATED    8  0     0
  GBA3 WILD-TYPE 87 37    35
D31V5, multiclass
       clus
vv      GBA3 MUTATED GBA3 WILD-TYPE
  N0               8             87
  N1               0             37
  N2+N3            0             35
                vv
clus              M0  M1  MX
  GBA3 MUTATED     7   0   1
  GBA3 WILD-TYPE 136   9  17
D31V6, multiclass
    clus
vv   GBA3 MUTATED GBA3 WILD-TYPE
  M0            7            136
  M1            0              9
  MX            1             17
D31V7, binary
                cls
clus              0  1
  GBA3 MUTATED    5  3
  GBA3 WILD-TYPE 88 76
[1] "tbl2"
                cls
clus             [,1] [,2]
  GBA3 MUTATED      5    3
  GBA3 WILD-TYPE   88   76
        clus
vv       GBA3 MUTATED GBA3 WILD-TYPE
  FEMALE            5             88
  MALE              3             76
D31V8, continuous
[1] "Remove cluster labels:" "GBA3 MUTATED"          
clus
  GBA3 MUTATED GBA3 WILD-TYPE 
             1             11 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-64-1677 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-71-6725     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4676     TCGA-75-5122 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  GBA3 MUTATED                            0                                 0
  GBA3 WILD-TYPE                          2                                39
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  GBA3 MUTATED                                                    5
  GBA3 WILD-TYPE                                                110
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  GBA3 MUTATED                                            0
  GBA3 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  GBA3 MUTATED                                               2
  GBA3 WILD-TYPE                                             0
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  GBA3 MUTATED                                0
  GBA3 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  GBA3 MUTATED                                    0
  GBA3 WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  GBA3 MUTATED                              0                             1
  GBA3 WILD-TYPE                            2                             3
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  GBA3 MUTATED                                               0
  GBA3 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  GBA3 MUTATED                              0
  GBA3 WILD-TYPE                            2
D31V9, multiclass
D31V10, binary
                cls
clus               0   1
  GBA3 MUTATED     0   8
  GBA3 WILD-TYPE  14 150
[1] "tbl2"
                cls
clus             [,1] [,2]
  GBA3 MUTATED      0    8
  GBA3 WILD-TYPE   14  150
     clus
vv    GBA3 MUTATED GBA3 WILD-TYPE
  NO             0             14
  YES            8            150
D31V11, continuous
D31V12, continuous
                vv
clus              R0  R1  R2  RX
  GBA3 MUTATED     7   0   0   0
  GBA3 WILD-TYPE 108   6   4   9
D31V13, multiclass
    clus
vv   GBA3 MUTATED GBA3 WILD-TYPE
  R0            7            108
  R1            0              6
  R2            0              4
  RX            0              9

Clustering(32) Variable = MYL10 MUTATION ANALYSIS
D32V1, survival
                 sevent
clus2              0  1
  MYL10 MUTATED    3  2
  MYL10 WILD-TYPE 96 54
  MYL10 MUTATED MYL10 WILD-TYPE 
              5             150 
  MYL10 MUTATED MYL10 WILD-TYPE 
              2              54 
$`MYL10 MUTATED`
TCGA-05-4250 TCGA-05-4398 TCGA-05-4418 TCGA-05-4430 TCGA-73-4676 
        3.98        47.05         8.98        25.02         5.39 

$`MYL10 WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 
       50.07        19.92        14.01        45.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
       29.95        12.00        30.02        21.99        26.01        26.01 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02        15.02         4.96        28.96 
TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
       22.03         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        97.74       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61        14.73        21.93        46.98 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        44.94        24.36        42.08        42.77         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        37.15        38.24        23.51         6.21        23.74 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       13.71        12.59        13.38        10.78         9.93        27.78 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
       11.90         5.42        12.16        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46         5.16 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       55.89        15.02        12.13        29.26        17.13        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        70.55        14.96        25.81        31.04        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12        18.64        29.00        25.12        22.55 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        87.98         2.04        42.90        28.41        51.25 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       28.44         0.99        20.02        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        5.69         4.60        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4677 
       29.95        26.27        15.35         4.27         1.32         1.25 
TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       12.36        10.62        41.33        10.16         2.60        13.71 

  MYL10 MUTATED MYL10 WILD-TYPE 
           3.98            0.07 
  MYL10 MUTATED MYL10 WILD-TYPE 
          47.05          120.79 
  MYL10 MUTATED MYL10 WILD-TYPE 
           8.98           21.06 
[1] "4.0 - 47.0 (9.0)"   "0.1 - 120.8 (21.1)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"MYL10 WILD-TYPE"   "MYL10 MUTATED" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "MYL10 MUTATED" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE"   "MYL10 MUTATED" "MYL10 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"MYL10 WILD-TYPE"   "MYL10 MUTATED" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE"   "MYL10 MUTATED" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"MYL10 WILD-TYPE"   "MYL10 MUTATED" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "MYL10 MUTATED" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE"   "MYL10 MUTATED" "MYL10 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"MYL10 WILD-TYPE"   "MYL10 MUTATED" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE"   "MYL10 MUTATED" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"MYL10 WILD-TYPE"   "MYL10 MUTATED" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "MYL10 MUTATED" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE"   "MYL10 MUTATED" "MYL10 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"MYL10 WILD-TYPE"   "MYL10 MUTATED" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE"   "MYL10 MUTATED" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
[1] "hr=" "1.6"
D32V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  MYL10 MUTATED          0        1         1         0          2          1
  MYL10 WILD-TYPE       37       52        10        23         31          5
                 vv
clus              STAGE IV
  MYL10 MUTATED          0
  MYL10 WILD-TYPE        9
D32V3, multiclass
                 vv
clus               T1  T2  T3  T4
  MYL10 MUTATED     0   2   2   1
  MYL10 WILD-TYPE  41 107  12   7
D32V4, multiclass
    clus
vv   MYL10 MUTATED MYL10 WILD-TYPE
  T1             0              41
  T2             2             107
  T3             2              12
  T4             1               7
                 vv
clus              N0 N1 N2+N3
  MYL10 MUTATED    1  2     2
  MYL10 WILD-TYPE 94 35    33
D32V5, multiclass
       clus
vv      MYL10 MUTATED MYL10 WILD-TYPE
  N0                1              94
  N1                2              35
  N2+N3             2              33
                 vv
clus               M0  M1  MX
  MYL10 MUTATED     5   0   0
  MYL10 WILD-TYPE 138   9  18
D32V6, multiclass
    clus
vv   MYL10 MUTATED MYL10 WILD-TYPE
  M0             5             138
  M1             0               9
  MX             0              18
D32V7, binary
                 cls
clus               0  1
  MYL10 MUTATED    3  2
  MYL10 WILD-TYPE 90 77
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MYL10 MUTATED      3    2
  MYL10 WILD-TYPE   90   77
        clus
vv       MYL10 MUTATED MYL10 WILD-TYPE
  FEMALE             3              90
  MALE               2              77
D32V8, continuous
[1] "Remove cluster labels:" "MYL10 MUTATED"         
clus
  MYL10 MUTATED MYL10 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4668      TCGA-75-5122 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  MYL10 MUTATED                            0                                 3
  MYL10 WILD-TYPE                          2                                36
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  MYL10 MUTATED                                                    2
  MYL10 WILD-TYPE                                                113
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  MYL10 MUTATED                                            0
  MYL10 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  MYL10 MUTATED                                               0
  MYL10 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  MYL10 MUTATED                                0
  MYL10 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  MYL10 MUTATED                                    0
  MYL10 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  MYL10 MUTATED                              0                             0
  MYL10 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  MYL10 MUTATED                                               0
  MYL10 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  MYL10 MUTATED                              0
  MYL10 WILD-TYPE                            2
D32V9, multiclass
D32V10, binary
                 cls
clus                0   1
  MYL10 MUTATED     1   4
  MYL10 WILD-TYPE  13 154
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MYL10 MUTATED      1    4
  MYL10 WILD-TYPE   13  154
     clus
vv    MYL10 MUTATED MYL10 WILD-TYPE
  NO              1              13
  YES             4             154
D32V11, continuous
D32V12, continuous
[1] "Remove cluster labels:" "MYL10 MUTATED"         
clus
  MYL10 MUTATED MYL10 WILD-TYPE 
              1              67 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4396      TCGA-05-4405 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4410      TCGA-05-4415      TCGA-05-4417      TCGA-05-4424 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4433      TCGA-05-5420      TCGA-05-5423 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-5425      TCGA-05-5428      TCGA-35-4122      TCGA-35-4123 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-35-5375      TCGA-38-4625      TCGA-38-4626      TCGA-44-2655 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2662 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3396      TCGA-44-3398 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-3918      TCGA-44-4112      TCGA-44-5645      TCGA-44-6144 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6147      TCGA-44-6148      TCGA-44-6774 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6775      TCGA-44-6776      TCGA-44-6777      TCGA-44-6778 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6779      TCGA-49-4486      TCGA-49-4494      TCGA-49-4505 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6642      TCGA-55-6712      TCGA-64-1677 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-64-5774      TCGA-64-5775 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-5778      TCGA-64-5779      TCGA-64-5781      TCGA-73-4659 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-73-4662      TCGA-73-4666      TCGA-73-4668      TCGA-73-4670 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-73-4675      TCGA-91-6829      TCGA-91-6836 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
                 vv
clus               R0  R1  R2  RX
  MYL10 MUTATED     4   0   1   0
  MYL10 WILD-TYPE 111   6   3   9
D32V13, multiclass
    clus
vv   MYL10 MUTATED MYL10 WILD-TYPE
  R0             4             111
  R1             0               6
  R2             1               3
  RX             0               9

Clustering(33) Variable = SMAD4 MUTATION ANALYSIS
D33V1, survival
                 sevent
clus2              0  1
  SMAD4 MUTATED    4  3
  SMAD4 WILD-TYPE 95 53
  SMAD4 MUTATED SMAD4 WILD-TYPE 
              7             148 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
              3              53 
$`SMAD4 MUTATED`
TCGA-05-4396 TCGA-05-5429 TCGA-05-5715 TCGA-38-4625 TCGA-44-2662 TCGA-49-4490 
        9.96         0.99         2.04        97.74        42.08        12.66 
TCGA-67-6216 
        4.60 

$`SMAD4 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-35-3615 TCGA-35-4122 
       15.02         4.96        28.96        22.03         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        5.95         8.68       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61        14.73        21.93        46.98 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       13.15        44.94        24.36        42.77         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       37.15        38.24        23.51         6.21        23.74        13.71 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
       12.59        13.38        10.78         9.93        27.78        11.90 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42        12.16        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       76.21        28.11        28.57        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46         5.16        55.89        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        29.26        17.13        20.48        71.47        70.55 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81        31.04        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
       18.64        29.00        25.12        22.55        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        87.98 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        2.04        42.90        28.41        51.25        28.44         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6217 
       20.02        18.84        14.04        12.66         5.69        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        26.27        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 
        4.27         1.32         5.39         1.25        12.36        10.62 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33        10.16         2.60        13.71 

  SMAD4 MUTATED SMAD4 WILD-TYPE 
           0.99            0.07 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
          97.74          120.79 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
           9.96           21.70 
[1] "1.0 - 97.7 (10.0)"  "0.1 - 120.8 (21.7)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
[1] "hr=" "1.2"
D33V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  SMAD4 MUTATED          1        3         0         0          2          1
  SMAD4 WILD-TYPE       36       50        11        23         31          5
                 vv
clus              STAGE IV
  SMAD4 MUTATED          0
  SMAD4 WILD-TYPE        9
D33V3, multiclass
                 vv
clus               T1  T2  T3  T4
  SMAD4 MUTATED     1   3   2   1
  SMAD4 WILD-TYPE  40 106  12   7
D33V4, multiclass
    clus
vv   SMAD4 MUTATED SMAD4 WILD-TYPE
  T1             1              40
  T2             3             106
  T3             2              12
  T4             1               7
                 vv
clus              N0 N1 N2+N3
  SMAD4 MUTATED    4  1     2
  SMAD4 WILD-TYPE 91 36    33
D33V5, multiclass
       clus
vv      SMAD4 MUTATED SMAD4 WILD-TYPE
  N0                4              91
  N1                1              36
  N2+N3             2              33
                 vv
clus               M0  M1  MX
  SMAD4 MUTATED     7   0   0
  SMAD4 WILD-TYPE 136   9  18
D33V6, multiclass
    clus
vv   SMAD4 MUTATED SMAD4 WILD-TYPE
  M0             7             136
  M1             0               9
  MX             0              18
D33V7, binary
                 cls
clus               0  1
  SMAD4 MUTATED    4  3
  SMAD4 WILD-TYPE 89 76
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SMAD4 MUTATED      4    3
  SMAD4 WILD-TYPE   89   76
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  FEMALE             4              89
  MALE               3              76
D33V8, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  SMAD4 MUTATED                            0                                 2
  SMAD4 WILD-TYPE                          2                                37
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SMAD4 MUTATED                                                    5
  SMAD4 WILD-TYPE                                                110
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  SMAD4 MUTATED                                            0
  SMAD4 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  SMAD4 MUTATED                                               0
  SMAD4 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  SMAD4 MUTATED                                0
  SMAD4 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  SMAD4 MUTATED                                    0
  SMAD4 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  SMAD4 MUTATED                              0                             0
  SMAD4 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  SMAD4 MUTATED                                               0
  SMAD4 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  SMAD4 MUTATED                              0
  SMAD4 WILD-TYPE                            2
D33V9, multiclass
D33V10, binary
                 cls
clus                0   1
  SMAD4 MUTATED     0   7
  SMAD4 WILD-TYPE  14 151
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SMAD4 MUTATED      0    7
  SMAD4 WILD-TYPE   14  151
     clus
vv    SMAD4 MUTATED SMAD4 WILD-TYPE
  NO              0              14
  YES             7             151
D33V11, continuous
D33V12, continuous
                 vv
clus               R0  R1  R2  RX
  SMAD4 MUTATED     6   0   0   0
  SMAD4 WILD-TYPE 109   6   4   9
D33V13, multiclass
    clus
vv   SMAD4 MUTATED SMAD4 WILD-TYPE
  R0             6             109
  R1             0               6
  R2             0               4
  RX             0               9

Clustering(34) Variable = ZNF268 MUTATION ANALYSIS
D34V1, survival
                  sevent
clus2               0  1
  ZNF268 MUTATED    2  2
  ZNF268 WILD-TYPE 97 54
  ZNF268 MUTATED ZNF268 WILD-TYPE 
               4              151 
  ZNF268 MUTATED ZNF268 WILD-TYPE 
               2               54 
$`ZNF268 MUTATED`
TCGA-05-4397 TCGA-44-2656 TCGA-44-3918 TCGA-55-1592 
       24.03        46.98        23.51        23.05 

$`ZNF268 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
        9.96        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 
       15.02         4.96        28.96        22.03         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        97.74       120.79 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       14.73        21.93        13.15        44.94        24.36        42.08 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 
       42.77         3.19         8.09        37.15        38.24         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
       23.74        13.71        12.59        13.38        10.78         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
       27.78        11.90         5.42        12.16        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
        5.16        55.89        15.02        12.13        29.26        17.13 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        70.55        14.96        25.81        31.04 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12        18.64        29.00        25.12 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       22.55        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
        6.21        33.37        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        87.98         2.04        42.90        28.41        51.25 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       28.44         0.99        20.02        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        5.69         4.60        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        26.27        15.35         4.27         1.32         5.39 
TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.25        12.36        10.62        41.33        10.16         2.60 
TCGA-91-6836 
       13.71 

  ZNF268 MUTATED ZNF268 WILD-TYPE 
           23.05             0.07 
  ZNF268 MUTATED ZNF268 WILD-TYPE 
           46.98           120.79 
  ZNF268 MUTATED ZNF268 WILD-TYPE 
           23.77            20.05 
[1] "23.1 - 47.0 (23.8)" "0.1 - 120.8 (20.1)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE"   "ZNF268 MUTATED" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"ZNF268 WILD-TYPE"   "ZNF268 MUTATED" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE"   "ZNF268 MUTATED" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"ZNF268 WILD-TYPE"   "ZNF268 MUTATED" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE"   "ZNF268 MUTATED" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"ZNF268 WILD-TYPE"   "ZNF268 MUTATED" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE"   "ZNF268 MUTATED" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"ZNF268 WILD-TYPE"   "ZNF268 MUTATED" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE"   "ZNF268 MUTATED" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"ZNF268 WILD-TYPE"   "ZNF268 MUTATED" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE"   "ZNF268 MUTATED" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"ZNF268 WILD-TYPE"   "ZNF268 MUTATED" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
[1] "hr=" "1.2"
D34V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  ZNF268 MUTATED          2        1         0         1          0          0
  ZNF268 WILD-TYPE       35       52        11        22         33          6
                  vv
clus               STAGE IV
  ZNF268 MUTATED          1
  ZNF268 WILD-TYPE        8
D34V3, multiclass
                  vv
clus                T1  T2  T3  T4
  ZNF268 MUTATED     1   4   0   0
  ZNF268 WILD-TYPE  40 105  14   8
D34V4, multiclass
    clus
vv   ZNF268 MUTATED ZNF268 WILD-TYPE
  T1              1               40
  T2              4              105
  T3              0               14
  T4              0                8
                  vv
clus               N0 N1 N2+N3
  ZNF268 MUTATED    3  1     1
  ZNF268 WILD-TYPE 92 36    34
D34V5, multiclass
       clus
vv      ZNF268 MUTATED ZNF268 WILD-TYPE
  N0                 3               92
  N1                 1               36
  N2+N3              1               34
                  vv
clus                M0  M1  MX
  ZNF268 MUTATED     4   1   0
  ZNF268 WILD-TYPE 139   8  18
D34V6, multiclass
    clus
vv   ZNF268 MUTATED ZNF268 WILD-TYPE
  M0              4              139
  M1              1                8
  MX              0               18
D34V7, binary
                  cls
clus                0  1
  ZNF268 MUTATED    1  4
  ZNF268 WILD-TYPE 92 75
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF268 MUTATED      1    4
  ZNF268 WILD-TYPE   92   75
        clus
vv       ZNF268 MUTATED ZNF268 WILD-TYPE
  FEMALE              1               92
  MALE                4               75
D34V8, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  ZNF268 MUTATED                            0                                 1
  ZNF268 WILD-TYPE                          2                                38
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ZNF268 MUTATED                                                    4
  ZNF268 WILD-TYPE                                                111
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  ZNF268 MUTATED                                            0
  ZNF268 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  ZNF268 MUTATED                                               0
  ZNF268 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  ZNF268 MUTATED                                0
  ZNF268 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  ZNF268 MUTATED                                    0
  ZNF268 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  ZNF268 MUTATED                              0                             0
  ZNF268 WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  ZNF268 MUTATED                                               0
  ZNF268 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  ZNF268 MUTATED                              0
  ZNF268 WILD-TYPE                            2
D34V9, multiclass
D34V10, binary
                  cls
clus                 0   1
  ZNF268 MUTATED     0   5
  ZNF268 WILD-TYPE  14 153
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF268 MUTATED      0    5
  ZNF268 WILD-TYPE   14  153
     clus
vv    ZNF268 MUTATED ZNF268 WILD-TYPE
  NO               0               14
  YES              5              153
D34V11, continuous
D34V12, continuous
                  vv
clus                R0  R1  R2  RX
  ZNF268 MUTATED     3   0   0   1
  ZNF268 WILD-TYPE 112   6   4   8
D34V13, multiclass
    clus
vv   ZNF268 MUTATED ZNF268 WILD-TYPE
  R0              3              112
  R1              0                6
  R2              0                4
  RX              1                8

Clustering(35) Variable = OR4Q3 MUTATION ANALYSIS
D35V1, survival
                 sevent
clus2              0  1
  OR4Q3 MUTATED    5  6
  OR4Q3 WILD-TYPE 94 50
  OR4Q3 MUTATED OR4Q3 WILD-TYPE 
             11             144 
  OR4Q3 MUTATED OR4Q3 WILD-TYPE 
              6              50 
$`OR4Q3 MUTATED`
TCGA-05-4382 TCGA-05-4397 TCGA-05-4418 TCGA-05-4424 TCGA-05-4432 TCGA-05-5715 
       19.92        24.03         8.98        30.02        25.02         2.04 
TCGA-38-4632 TCGA-44-5643 TCGA-49-4490 TCGA-50-5072 TCGA-73-4658 
       44.61        13.71        12.66         8.05        52.57 

$`OR4Q3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 
       50.07         3.98        14.01        45.01        37.02         9.96 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
       29.95        12.00        21.99        26.01        26.01        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 
       24.00        15.02        15.02         4.96        28.96        22.03 
TCGA-05-5429 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        0.99         0.46         7.36         5.95         8.68        97.74 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
      120.79        37.71        49.02        28.37        35.28        11.64 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       14.73        21.93        46.98        13.15        44.94        24.36 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       42.08        42.77         3.19         8.09        37.15        38.24 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
       23.51         6.21        23.74        12.59        13.38        10.78 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93        27.78        11.90         5.42        12.16        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
        5.16        55.89        15.02        12.13        29.26        17.13 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        70.55        14.96        25.81        31.04 
TCGA-50-5068 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
       49.28         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12        18.64        29.00        25.12        22.55 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        87.98         2.04        42.90        28.41        51.25 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       28.44         0.99        20.02        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4659 TCGA-73-4662 
        5.69         4.60        13.87         2.01        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       26.27        15.35         4.27         1.32         5.39         1.25 
TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       12.36        10.62        41.33        10.16         2.60        13.71 

  OR4Q3 MUTATED OR4Q3 WILD-TYPE 
           2.04            0.07 
  OR4Q3 MUTATED OR4Q3 WILD-TYPE 
          52.57          120.79 
  OR4Q3 MUTATED OR4Q3 WILD-TYPE 
          19.92           21.06 
[1] "2.0 - 52.6 (19.9)"  "0.1 - 120.8 (21.1)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
  "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
  "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE"   "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
  "OR4Q3 MUTATED" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
[1] "hr=" "1.8"
D35V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  OR4Q3 MUTATED          0        3         0         3          4          0
  OR4Q3 WILD-TYPE       37       50        11        20         29          6
                 vv
clus              STAGE IV
  OR4Q3 MUTATED          1
  OR4Q3 WILD-TYPE        8
D35V3, multiclass
                 vv
clus               T1  T2  T3  T4
  OR4Q3 MUTATED     0   8   3   0
  OR4Q3 WILD-TYPE  41 101  11   8
D35V4, multiclass
    clus
vv   OR4Q3 MUTATED OR4Q3 WILD-TYPE
  T1             0              41
  T2             8             101
  T3             3              11
  T4             0               8
                 vv
clus              N0 N1 N2+N3
  OR4Q3 MUTATED    4  3     4
  OR4Q3 WILD-TYPE 91 34    31
D35V5, multiclass
       clus
vv      OR4Q3 MUTATED OR4Q3 WILD-TYPE
  N0                4              91
  N1                3              34
  N2+N3             4              31
                 vv
clus               M0  M1  MX
  OR4Q3 MUTATED    10   1   0
  OR4Q3 WILD-TYPE 133   8  18
D35V6, multiclass
    clus
vv   OR4Q3 MUTATED OR4Q3 WILD-TYPE
  M0            10             133
  M1             1               8
  MX             0              18
D35V7, binary
                 cls
clus               0  1
  OR4Q3 MUTATED    3  8
  OR4Q3 WILD-TYPE 90 71
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4Q3 MUTATED      3    8
  OR4Q3 WILD-TYPE   90   71
        clus
vv       OR4Q3 MUTATED OR4Q3 WILD-TYPE
  FEMALE             3              90
  MALE               8              71
D35V8, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR4Q3 MUTATED                            0                                 6
  OR4Q3 WILD-TYPE                          2                                33
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR4Q3 MUTATED                                                    5
  OR4Q3 WILD-TYPE                                                110
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR4Q3 MUTATED                                            0
  OR4Q3 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR4Q3 MUTATED                                               0
  OR4Q3 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  OR4Q3 MUTATED                                0
  OR4Q3 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  OR4Q3 MUTATED                                    0
  OR4Q3 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR4Q3 MUTATED                              0                             0
  OR4Q3 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR4Q3 MUTATED                                               0
  OR4Q3 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  OR4Q3 MUTATED                              0
  OR4Q3 WILD-TYPE                            2
D35V9, multiclass
D35V10, binary
                 cls
clus                0   1
  OR4Q3 MUTATED     2   9
  OR4Q3 WILD-TYPE  12 149
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4Q3 MUTATED      2    9
  OR4Q3 WILD-TYPE   12  149
     clus
vv    OR4Q3 MUTATED OR4Q3 WILD-TYPE
  NO              2              12
  YES             9             149
D35V11, continuous
D35V12, continuous
[1] "Remove cluster labels:" "OR4Q3 MUTATED"         
clus
  OR4Q3 MUTATED OR4Q3 WILD-TYPE 
              1              67 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4396      TCGA-05-4405 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-05-4410      TCGA-05-4415      TCGA-05-4417      TCGA-05-4427 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-05-4433      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-05-5428      TCGA-35-4122      TCGA-35-4123      TCGA-35-5375 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-38-4625      TCGA-38-4626      TCGA-44-2655      TCGA-44-2656 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2662      TCGA-44-2666 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5645      TCGA-44-6144      TCGA-44-6145 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-44-6147      TCGA-44-6148      TCGA-44-6774      TCGA-44-6775 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-44-6776      TCGA-44-6777      TCGA-44-6778      TCGA-44-6779 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-49-4486      TCGA-49-4494      TCGA-49-4505      TCGA-55-1592 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1595      TCGA-55-1596      TCGA-55-5899 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-55-6642      TCGA-55-6712      TCGA-64-1677      TCGA-64-1678 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-73-4659      TCGA-73-4662 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4668      TCGA-73-4670      TCGA-73-4675 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
     TCGA-73-4676      TCGA-91-6829      TCGA-91-6836 
"OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" "OR4Q3 WILD-TYPE" 
                 vv
clus               R0  R1  R2  RX
  OR4Q3 MUTATED     7   1   0   0
  OR4Q3 WILD-TYPE 108   5   4   9
D35V13, multiclass
    clus
vv   OR4Q3 MUTATED OR4Q3 WILD-TYPE
  R0             7             108
  R1             1               5
  R2             0               4
  RX             0               9

Clustering(36) Variable = ARID1A MUTATION ANALYSIS
D36V1, survival
                  sevent
clus2               0  1
  ARID1A MUTATED    9  1
  ARID1A WILD-TYPE 90 55
  ARID1A MUTATED ARID1A WILD-TYPE 
              10              145 
  ARID1A MUTATED ARID1A WILD-TYPE 
               1               55 
$`ARID1A MUTATED`
TCGA-05-4382 TCGA-05-4425 TCGA-05-4427 TCGA-05-5715 TCGA-38-4631 TCGA-44-6147 
       19.92        21.99        26.01         2.04        11.64        27.78 
TCGA-55-5899 TCGA-64-1678 TCGA-67-3771 TCGA-91-6831 
        2.86        39.09        20.02        10.16 

$`ARID1A WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 
       50.07         3.98        14.01        45.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4426 
       14.93         8.98        29.95        12.00        30.02        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02        15.02         4.96 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
       28.96        22.03         0.99         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        97.74       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       35.28        44.61        14.73        21.93        46.98        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       44.94        24.36        42.08        42.77         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       37.15        38.24        23.51         6.21        23.74        13.71 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 
       12.59        13.38        10.78         9.93        11.90         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
       12.16        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46         5.16        55.89        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        29.26        17.13        20.48        71.47        70.55 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81        31.04        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
       18.64        29.00        25.12        22.55        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       38.73        48.62        45.17         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       56.81        20.65        37.02        87.98         2.04        42.90 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 
       28.41        51.25        28.44         0.99        18.84        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
       12.66         5.69         4.60        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        26.27        15.35         4.27         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6835 
        5.39         1.25        12.36        10.62        41.33         2.60 
TCGA-91-6836 
       13.71 

  ARID1A MUTATED ARID1A WILD-TYPE 
            2.04             0.07 
  ARID1A MUTATED ARID1A WILD-TYPE 
           39.09           120.79 
  ARID1A MUTATED ARID1A WILD-TYPE 
           19.97            21.47 
[1] "2.0 - 39.1 (20.0)"  "0.1 - 120.8 (21.5)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
[1] "hr=" "2.4"
D36V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  ARID1A MUTATED          3        4         1         1          1          0
  ARID1A WILD-TYPE       34       49        10        22         32          6
                  vv
clus               STAGE IV
  ARID1A MUTATED          1
  ARID1A WILD-TYPE        8
D36V3, multiclass
                  vv
clus                T1  T2  T3  T4
  ARID1A MUTATED     3   8   0   0
  ARID1A WILD-TYPE  38 101  14   8
D36V4, multiclass
    clus
vv   ARID1A MUTATED ARID1A WILD-TYPE
  T1              3               38
  T2              8              101
  T3              0               14
  T4              0                8
                  vv
clus               N0 N1 N2+N3
  ARID1A MUTATED    7  2     1
  ARID1A WILD-TYPE 88 35    34
D36V5, multiclass
       clus
vv      ARID1A MUTATED ARID1A WILD-TYPE
  N0                 7               88
  N1                 2               35
  N2+N3              1               34
                  vv
clus                M0  M1  MX
  ARID1A MUTATED     9   1   1
  ARID1A WILD-TYPE 134   8  17
D36V6, multiclass
    clus
vv   ARID1A MUTATED ARID1A WILD-TYPE
  M0              9              134
  M1              1                8
  MX              1               17
D36V7, binary
                  cls
clus                0  1
  ARID1A MUTATED    7  4
  ARID1A WILD-TYPE 86 75
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ARID1A MUTATED      7    4
  ARID1A WILD-TYPE   86   75
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  FEMALE              7               86
  MALE                4               75
D36V8, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  ARID1A MUTATED                            0                                 4
  ARID1A WILD-TYPE                          2                                35
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ARID1A MUTATED                                                    7
  ARID1A WILD-TYPE                                                108
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  ARID1A MUTATED                                            0
  ARID1A WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  ARID1A MUTATED                                               0
  ARID1A WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  ARID1A MUTATED                                0
  ARID1A WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  ARID1A MUTATED                                    0
  ARID1A WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  ARID1A MUTATED                              0                             0
  ARID1A WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  ARID1A MUTATED                                               0
  ARID1A WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  ARID1A MUTATED                              0
  ARID1A WILD-TYPE                            2
D36V9, multiclass
D36V10, binary
                  cls
clus                 0   1
  ARID1A MUTATED     0  11
  ARID1A WILD-TYPE  14 147
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ARID1A MUTATED      0   11
  ARID1A WILD-TYPE   14  147
     clus
vv    ARID1A MUTATED ARID1A WILD-TYPE
  NO               0               14
  YES             11              147
D36V11, continuous
D36V12, continuous
                  vv
clus                R0  R1  R2  RX
  ARID1A MUTATED     8   1   0   0
  ARID1A WILD-TYPE 107   5   4   9
D36V13, multiclass
    clus
vv   ARID1A MUTATED ARID1A WILD-TYPE
  R0              8              107
  R1              1                5
  R2              0                4
  RX              0                9

Clustering(37) Variable = CCDC73 MUTATION ANALYSIS
D37V1, survival
                  sevent
clus2               0  1
  CCDC73 MUTATED    6  4
  CCDC73 WILD-TYPE 93 52
  CCDC73 MUTATED CCDC73 WILD-TYPE 
              10              145 
  CCDC73 MUTATED CCDC73 WILD-TYPE 
               4               52 
$`CCDC73 MUTATED`
TCGA-05-5423 TCGA-38-4625 TCGA-44-6147 TCGA-49-4488 TCGA-50-5049 TCGA-50-5051 
        4.96        97.74        27.78        28.57        70.55        14.96 
TCGA-50-6594 TCGA-55-1595 TCGA-55-5899 TCGA-91-6829 
       12.16        48.62         2.86        41.33 

$`CCDC73 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       21.99        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 
       15.02        15.02        28.96        22.03         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         5.95         8.68       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61        14.73 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       21.93        46.98        13.15        44.94        24.36        42.08 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       42.77         3.19         8.09        37.15        38.24        23.51 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21        23.74        13.71        12.59        13.38        10.78 
TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        9.93        11.90         5.42        12.16        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 
       36.49        16.41        76.21        28.11        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46         5.16 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       55.89        15.02        12.13        29.26        17.13        20.48 
TCGA-50-5045 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       71.47        25.81        31.04        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
       18.64        29.00        25.12        22.55        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       25.51        11.05         6.21        33.37        23.05        38.73 
TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
       45.17         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        87.98         2.04        42.90        28.41 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       51.25        28.44         0.99        20.02        18.84        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
       12.66         5.69         4.60        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        26.27        15.35         4.27         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 
        5.39         1.25        12.36        10.62        10.16         2.60 
TCGA-91-6836 
       13.71 

  CCDC73 MUTATED CCDC73 WILD-TYPE 
            2.86             0.07 
  CCDC73 MUTATED CCDC73 WILD-TYPE 
           97.74           120.79 
  CCDC73 MUTATED CCDC73 WILD-TYPE 
          28.175           20.480 
[1] "2.9 - 97.7 (28.2)"  "0.1 - 120.8 (20.5)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"CCDC73 WILD-TYPE"   "CCDC73 MUTATED"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"CCDC73 WILD-TYPE"   "CCDC73 MUTATED"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"CCDC73 WILD-TYPE"   "CCDC73 MUTATED"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"CCDC73 WILD-TYPE"   "CCDC73 MUTATED" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE"   "CCDC73 MUTATED" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
[1] "hr=" "1.3"
D37V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  CCDC73 MUTATED          5        2         0         1          3          0
  CCDC73 WILD-TYPE       32       51        11        22         30          6
                  vv
clus               STAGE IV
  CCDC73 MUTATED          0
  CCDC73 WILD-TYPE        9
D37V3, multiclass
                  vv
clus                T1  T2  T3  T4
  CCDC73 MUTATED     4   5   2   0
  CCDC73 WILD-TYPE  37 104  12   8
D37V4, multiclass
    clus
vv   CCDC73 MUTATED CCDC73 WILD-TYPE
  T1              4               37
  T2              5              104
  T3              2               12
  T4              0                8
                  vv
clus               N0 N1 N2+N3
  CCDC73 MUTATED    5  2     3
  CCDC73 WILD-TYPE 90 35    32
D37V5, multiclass
       clus
vv      CCDC73 MUTATED CCDC73 WILD-TYPE
  N0                 5               90
  N1                 2               35
  N2+N3              3               32
                  vv
clus                M0  M1  MX
  CCDC73 MUTATED     9   0   2
  CCDC73 WILD-TYPE 134   9  16
D37V6, multiclass
    clus
vv   CCDC73 MUTATED CCDC73 WILD-TYPE
  M0              9              134
  M1              0                9
  MX              2               16
D37V7, binary
                  cls
clus                0  1
  CCDC73 MUTATED    7  4
  CCDC73 WILD-TYPE 86 75
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CCDC73 MUTATED      7    4
  CCDC73 WILD-TYPE   86   75
        clus
vv       CCDC73 MUTATED CCDC73 WILD-TYPE
  FEMALE              7               86
  MALE                4               75
D37V8, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  CCDC73 MUTATED                            0                                 1
  CCDC73 WILD-TYPE                          2                                38
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CCDC73 MUTATED                                                    7
  CCDC73 WILD-TYPE                                                108
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  CCDC73 MUTATED                                            0
  CCDC73 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  CCDC73 MUTATED                                               1
  CCDC73 WILD-TYPE                                             1
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  CCDC73 MUTATED                                1
  CCDC73 WILD-TYPE                              1
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  CCDC73 MUTATED                                    0
  CCDC73 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  CCDC73 MUTATED                              0                             1
  CCDC73 WILD-TYPE                            2                             3
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  CCDC73 MUTATED                                               0
  CCDC73 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  CCDC73 MUTATED                              0
  CCDC73 WILD-TYPE                            2
D37V9, multiclass
D37V10, binary
                  cls
clus                 0   1
  CCDC73 MUTATED     1  10
  CCDC73 WILD-TYPE  13 148
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CCDC73 MUTATED      1   10
  CCDC73 WILD-TYPE   13  148
     clus
vv    CCDC73 MUTATED CCDC73 WILD-TYPE
  NO               1               13
  YES             10              148
D37V11, continuous
D37V12, continuous
                  vv
clus                R0  R1  R2  RX
  CCDC73 MUTATED     6   0   1   0
  CCDC73 WILD-TYPE 109   6   3   9
D37V13, multiclass
    clus
vv   CCDC73 MUTATED CCDC73 WILD-TYPE
  R0              6              109
  R1              0                6
  R2              1                3
  RX              0                9

Clustering(38) Variable = MGA MUTATION ANALYSIS
D38V1, survival
               sevent
clus2            0  1
  MGA MUTATED   10  6
  MGA WILD-TYPE 89 50
  MGA MUTATED MGA WILD-TYPE 
           16           139 
  MGA MUTATED MGA WILD-TYPE 
            6            50 
$`MGA MUTATED`
TCGA-05-4396 TCGA-05-4405 TCGA-05-4418 TCGA-05-5428 TCGA-05-5715 TCGA-35-5375 
        9.96        20.05         8.98        22.03         2.04         8.68 
TCGA-38-4628 TCGA-44-2655 TCGA-49-4494 TCGA-49-6743 TCGA-49-6745 TCGA-50-5931 
       49.02        21.93        35.54        12.13        17.13         8.78 
TCGA-55-6712 TCGA-64-5779 TCGA-73-4668 TCGA-91-6829 
        0.79        28.41        15.35        41.33 

$`MGA WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        19.00         2.96        14.93 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
       29.95        12.00        30.02        21.99        26.01        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02        15.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 
       28.96         0.99         0.46         7.36         5.95        97.74 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
      120.79        37.71        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       14.73        46.98        13.15        44.94        24.36        42.08 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       42.77         3.19         8.09        37.15        38.24        23.51 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21        23.74        13.71        12.59        13.38        10.78 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93        27.78        11.90         5.42        12.16        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       12.66        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-50-5044 TCGA-50-5045 
        5.16        55.89        15.02        29.26        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       70.55        14.96        25.81        31.04        49.28         8.05 
TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        9.27        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
       18.64        29.00        25.12        22.55        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        87.98         2.04 
TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       42.90        51.25        28.44         0.99        20.02        18.84 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
       14.04        12.66         5.69         4.60        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 
       52.57        23.38        29.95        26.27         4.27         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 
        5.39         1.25        12.36        10.62        10.16         2.60 
TCGA-91-6836 
       13.71 

  MGA MUTATED MGA WILD-TYPE 
         0.79          0.07 
  MGA MUTATED MGA WILD-TYPE 
        49.02        120.79 
  MGA MUTATED MGA WILD-TYPE 
        16.24         21.99 
[1] "0.8 - 49.0 (16.2)"  "0.1 - 120.8 (22.0)"
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428    TCGA-05-5429 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
  "MGA MUTATED" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
  "MGA MUTATED" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
  "MGA MUTATED" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-86-6562 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-91-6828    TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428    TCGA-05-5429 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
  "MGA MUTATED" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
  "MGA MUTATED" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
  "MGA MUTATED" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-86-6562 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-91-6828    TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428    TCGA-05-5429 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
  "MGA MUTATED" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
  "MGA MUTATED" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
  "MGA MUTATED" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE"   "MGA MUTATED" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-86-6562 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-91-6828    TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"MGA WILD-TYPE"   "MGA MUTATED" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
[1] "hr=" "1.5"
D38V2, continuous
               vv
clus            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  MGA MUTATED          1        4         2         2          6          1
  MGA WILD-TYPE       36       49         9        21         27          5
               vv
clus            STAGE IV
  MGA MUTATED          0
  MGA WILD-TYPE        9
D38V3, multiclass
               vv
clus            T1 T2 T3 T4
  MGA MUTATED    3 10  2  1
  MGA WILD-TYPE 38 99 12  7
D38V4, multiclass
    clus
vv   MGA MUTATED MGA WILD-TYPE
  T1           3            38
  T2          10            99
  T3           2            12
  T4           1             7
               vv
clus            N0 N1 N2+N3
  MGA MUTATED    5  5     6
  MGA WILD-TYPE 90 32    29
D38V5, multiclass
       clus
vv      MGA MUTATED MGA WILD-TYPE
  N0              5            90
  N1              5            32
  N2+N3           6            29
               vv
clus             M0  M1  MX
  MGA MUTATED    13   0   3
  MGA WILD-TYPE 130   9  15
D38V6, multiclass
    clus
vv   MGA MUTATED MGA WILD-TYPE
  M0          13           130
  M1           0             9
  MX           3            15
D38V7, binary
               cls
clus             0  1
  MGA MUTATED    7  9
  MGA WILD-TYPE 86 70
[1] "tbl2"
               cls
clus            [,1] [,2]
  MGA MUTATED      7    9
  MGA WILD-TYPE   86   70
        clus
vv       MGA MUTATED MGA WILD-TYPE
  FEMALE           7            86
  MALE             9            70
D38V8, continuous
[1] "Remove cluster labels:" "MGA MUTATED"           
clus
  MGA MUTATED MGA WILD-TYPE 
            2            10 
   TCGA-35-4122    TCGA-35-4123    TCGA-64-1677    TCGA-64-5778    TCGA-71-6725 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4676    TCGA-75-5122 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
               vv
clus            LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  MGA MUTATED                            1                                 5
  MGA WILD-TYPE                          1                                34
               vv
clus            LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  MGA MUTATED                                                    7
  MGA WILD-TYPE                                                108
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  MGA MUTATED                                            0
  MGA WILD-TYPE                                          1
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  MGA MUTATED                                               1
  MGA WILD-TYPE                                             1
               vv
clus            LUNG CLEAR CELL ADENOCARCINOMA
  MGA MUTATED                                1
  MGA WILD-TYPE                              1
               vv
clus            LUNG MICROPAPILLARY ADENOCARCINOMA LUNG MUCINOUS ADENOCARCINOMA
  MGA MUTATED                                    1                            0
  MGA WILD-TYPE                                  1                            2
               vv
clus            LUNG PAPILLARY ADENOCARCINOMA
  MGA MUTATED                               0
  MGA WILD-TYPE                             4
               vv
clus            LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  MGA MUTATED                                               0
  MGA WILD-TYPE                                             1
               vv
clus            MUCINOUS (COLLOID) CARCINOMA
  MGA MUTATED                              0
  MGA WILD-TYPE                            2
D38V9, multiclass
D38V10, binary
               cls
clus              0   1
  MGA MUTATED     1  15
  MGA WILD-TYPE  13 143
[1] "tbl2"
               cls
clus            [,1] [,2]
  MGA MUTATED      1   15
  MGA WILD-TYPE   13  143
     clus
vv    MGA MUTATED MGA WILD-TYPE
  NO            1            13
  YES          15           143
D38V11, continuous
D38V12, continuous
               vv
clus             R0  R1  R2  RX
  MGA MUTATED    13   0   0   0
  MGA WILD-TYPE 102   6   4   9
D38V13, multiclass
    clus
vv   MGA MUTATED MGA WILD-TYPE
  R0          13           102
  R1           0             6
  R2           0             4
  RX           0             9

Clustering(39) Variable = FAM48B1 MUTATION ANALYSIS
D39V1, survival
                   sevent
clus2                0  1
  FAM48B1 MUTATED    6  3
  FAM48B1 WILD-TYPE 93 53
  FAM48B1 MUTATED FAM48B1 WILD-TYPE 
                9               146 
  FAM48B1 MUTATED FAM48B1 WILD-TYPE 
                3                53 
$`FAM48B1 MUTATED`
TCGA-05-4427 TCGA-35-4123 TCGA-38-4628 TCGA-38-4631 TCGA-44-2657 TCGA-44-2661 
       26.01         5.95        49.02        11.64        13.15        24.36 
TCGA-50-5931 TCGA-64-1678 TCGA-73-4666 
        8.78        39.09        26.27 

$`FAM48B1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       21.99        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 
       15.02         4.96        28.96        22.03         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         8.68        97.74       120.79        37.71 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       28.37        35.28        44.61        14.73        21.93        46.98 
TCGA-44-2659 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
       44.94        42.08        42.77         3.19         8.09        37.15 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
       38.24        23.51         6.21        23.74        13.71        12.59 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
       13.38        10.78         9.93        27.78        11.90         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
       12.16        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46         5.16        55.89        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        29.26        17.13        20.48        71.47        70.55 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81        31.04        49.28         8.05         9.27 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12        18.64 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
       29.00        25.12        22.55        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       56.81        20.65        37.02        87.98         2.04        42.90 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       28.41        51.25        28.44         0.99        20.02        18.84 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
       14.04        12.66         5.69         4.60        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       52.57        23.38        29.95        15.35         4.27         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        5.39         1.25        12.36        10.62        41.33        10.16 
TCGA-91-6835 TCGA-91-6836 
        2.60        13.71 

  FAM48B1 MUTATED FAM48B1 WILD-TYPE 
             5.95              0.07 
  FAM48B1 MUTATED FAM48B1 WILD-TYPE 
            49.02            120.79 
  FAM48B1 MUTATED FAM48B1 WILD-TYPE 
           24.360            20.565 
[1] "6.0 - 49.0 (24.4)"  "0.1 - 120.8 (20.6)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
  "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
  "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
  "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
  "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
  "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
  "FAM48B1 MUTATED" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE"   "FAM48B1 MUTATED" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
[1] "hr=" "1"  
D39V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  FAM48B1 MUTATED          2        4         1         2          0          0
  FAM48B1 WILD-TYPE       35       49        10        21         33          6
                   vv
clus                STAGE IV
  FAM48B1 MUTATED          1
  FAM48B1 WILD-TYPE        8
D39V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  FAM48B1 MUTATED     3   7   0   0
  FAM48B1 WILD-TYPE  38 102  14   8
D39V4, multiclass
    clus
vv   FAM48B1 MUTATED FAM48B1 WILD-TYPE
  T1               3                38
  T2               7               102
  T3               0                14
  T4               0                 8
                   vv
clus                N0 N1 N2+N3
  FAM48B1 MUTATED    7  2     0
  FAM48B1 WILD-TYPE 88 35    35
D39V5, multiclass
       clus
vv      FAM48B1 MUTATED FAM48B1 WILD-TYPE
  N0                  7                88
  N1                  2                35
  N2+N3               0                35
                   vv
clus                 M0  M1  MX
  FAM48B1 MUTATED     9   1   0
  FAM48B1 WILD-TYPE 134   8  18
D39V6, multiclass
    clus
vv   FAM48B1 MUTATED FAM48B1 WILD-TYPE
  M0               9               134
  M1               1                 8
  MX               0                18
D39V7, binary
                   cls
clus                 0  1
  FAM48B1 MUTATED    8  2
  FAM48B1 WILD-TYPE 85 77
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM48B1 MUTATED      8    2
  FAM48B1 WILD-TYPE   85   77
        clus
vv       FAM48B1 MUTATED FAM48B1 WILD-TYPE
  FEMALE               8                85
  MALE                 2                77
D39V8, continuous
[1] "Remove cluster labels:" "FAM48B1 MUTATED"       
clus
  FAM48B1 MUTATED FAM48B1 WILD-TYPE 
                2                10 
       TCGA-35-4122        TCGA-35-5375        TCGA-64-1677        TCGA-64-5778 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4659        TCGA-73-4662        TCGA-73-4668 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
       TCGA-73-4676        TCGA-75-5122 
"FAM48B1 WILD-TYPE" "FAM48B1 WILD-TYPE" 
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  FAM48B1 MUTATED                            0
  FAM48B1 WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  FAM48B1 MUTATED                                   1
  FAM48B1 WILD-TYPE                                38
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  FAM48B1 MUTATED                                                    9
  FAM48B1 WILD-TYPE                                                106
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  FAM48B1 MUTATED                                            0
  FAM48B1 WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  FAM48B1 MUTATED                                               0
  FAM48B1 WILD-TYPE                                             2
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  FAM48B1 MUTATED                                0
  FAM48B1 WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  FAM48B1 MUTATED                                    0
  FAM48B1 WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  FAM48B1 MUTATED                              0                             0
  FAM48B1 WILD-TYPE                            2                             4
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  FAM48B1 MUTATED                                               0
  FAM48B1 WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  FAM48B1 MUTATED                              0
  FAM48B1 WILD-TYPE                            2
D39V9, multiclass
D39V10, binary
                   cls
clus                  0   1
  FAM48B1 MUTATED     1   9
  FAM48B1 WILD-TYPE  13 149
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM48B1 MUTATED      1    9
  FAM48B1 WILD-TYPE   13  149
     clus
vv    FAM48B1 MUTATED FAM48B1 WILD-TYPE
  NO                1                13
  YES               9               149
D39V11, continuous
D39V12, continuous
                   vv
clus                 R0  R1  R2  RX
  FAM48B1 MUTATED    10   0   0   0
  FAM48B1 WILD-TYPE 105   6   4   9
D39V13, multiclass
    clus
vv   FAM48B1 MUTATED FAM48B1 WILD-TYPE
  R0              10               105
  R1               0                 6
  R2               0                 4
  RX               0                 9

Clustering(40) Variable = IFNA7 MUTATION ANALYSIS
D40V1, survival
                 sevent
clus2              0  1
  IFNA7 MUTATED    3  2
  IFNA7 WILD-TYPE 96 54
  IFNA7 MUTATED IFNA7 WILD-TYPE 
              5             150 
  IFNA7 MUTATED IFNA7 WILD-TYPE 
              2              54 
$`IFNA7 MUTATED`
TCGA-05-4396 TCGA-05-4397 TCGA-05-4424 TCGA-44-2659 TCGA-44-6774 
        9.96        24.03        30.02        44.94         5.42 

$`IFNA7 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
        8.98        29.95        12.00        21.99        26.01        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02        15.02         4.96 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
       28.96        22.03         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        97.74       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61        14.73        21.93 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       46.98        13.15        24.36        42.08        42.77         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        37.15        38.24        23.51         6.21        23.74 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       13.71        12.59        13.38        10.78         9.93        27.78 
TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
       11.90        12.16        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46         5.16        55.89 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        29.26        17.13        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       70.55        14.96        25.81        31.04        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12        18.64        29.00        25.12        22.55        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       87.98         2.04        42.90        28.41        51.25        28.44 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99        20.02        18.84        14.04        12.66         5.69 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        4.60        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       26.27        15.35         4.27         1.32         5.39         1.25 
TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       12.36        10.62        41.33        10.16         2.60        13.71 

  IFNA7 MUTATED IFNA7 WILD-TYPE 
           5.42            0.07 
  IFNA7 MUTATED IFNA7 WILD-TYPE 
          44.94          120.79 
  IFNA7 MUTATED IFNA7 WILD-TYPE 
         24.030          20.565 
[1] "5.4 - 44.9 (24.0)"  "0.1 - 120.8 (20.6)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE"   "IFNA7 MUTATED"   "IFNA7 MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"IFNA7 WILD-TYPE"   "IFNA7 MUTATED" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE"   "IFNA7 MUTATED" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"IFNA7 WILD-TYPE"   "IFNA7 MUTATED" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE"   "IFNA7 MUTATED"   "IFNA7 MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"IFNA7 WILD-TYPE"   "IFNA7 MUTATED" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE"   "IFNA7 MUTATED" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"IFNA7 WILD-TYPE"   "IFNA7 MUTATED" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE"   "IFNA7 MUTATED"   "IFNA7 MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"IFNA7 WILD-TYPE"   "IFNA7 MUTATED" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE"   "IFNA7 MUTATED" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"IFNA7 WILD-TYPE"   "IFNA7 MUTATED" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
[1] "hr=" "1.2"
D40V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  IFNA7 MUTATED          0        0         0         3          1          1
  IFNA7 WILD-TYPE       37       53        11        20         32          5
                 vv
clus              STAGE IV
  IFNA7 MUTATED          0
  IFNA7 WILD-TYPE        9
D40V3, multiclass
                 vv
clus               T1  T2  T3  T4
  IFNA7 MUTATED     2   1   1   1
  IFNA7 WILD-TYPE  39 108  13   7
D40V4, multiclass
    clus
vv   IFNA7 MUTATED IFNA7 WILD-TYPE
  T1             2              39
  T2             1             108
  T3             1              13
  T4             1               7
                 vv
clus              N0 N1 N2+N3
  IFNA7 MUTATED    1  3     1
  IFNA7 WILD-TYPE 94 34    34
D40V5, multiclass
       clus
vv      IFNA7 MUTATED IFNA7 WILD-TYPE
  N0                1              94
  N1                3              34
  N2+N3             1              34
                 vv
clus               M0  M1  MX
  IFNA7 MUTATED     5   0   0
  IFNA7 WILD-TYPE 138   9  18
D40V6, multiclass
    clus
vv   IFNA7 MUTATED IFNA7 WILD-TYPE
  M0             5             138
  M1             0               9
  MX             0              18
D40V7, binary
                 cls
clus               0  1
  IFNA7 MUTATED    2  3
  IFNA7 WILD-TYPE 91 76
[1] "tbl2"
                 cls
clus              [,1] [,2]
  IFNA7 MUTATED      2    3
  IFNA7 WILD-TYPE   91   76
        clus
vv       IFNA7 MUTATED IFNA7 WILD-TYPE
  FEMALE             2              91
  MALE               3              76
D40V8, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  IFNA7 MUTATED                            0                                 3
  IFNA7 WILD-TYPE                          2                                36
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  IFNA7 MUTATED                                                    2
  IFNA7 WILD-TYPE                                                113
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  IFNA7 MUTATED                                            0
  IFNA7 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  IFNA7 MUTATED                                               0
  IFNA7 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  IFNA7 MUTATED                                0
  IFNA7 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  IFNA7 MUTATED                                    0
  IFNA7 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  IFNA7 MUTATED                              0                             0
  IFNA7 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  IFNA7 MUTATED                                               0
  IFNA7 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  IFNA7 MUTATED                              0
  IFNA7 WILD-TYPE                            2
D40V9, multiclass
D40V10, binary
                 cls
clus                0   1
  IFNA7 MUTATED     0   5
  IFNA7 WILD-TYPE  14 153
[1] "tbl2"
                 cls
clus              [,1] [,2]
  IFNA7 MUTATED      0    5
  IFNA7 WILD-TYPE   14  153
     clus
vv    IFNA7 MUTATED IFNA7 WILD-TYPE
  NO              0              14
  YES             5             153
D40V11, continuous
D40V12, continuous
                 vv
clus               R0  R1  R2  RX
  IFNA7 MUTATED     3   1   0   0
  IFNA7 WILD-TYPE 112   5   4   9
D40V13, multiclass
    clus
vv   IFNA7 MUTATED IFNA7 WILD-TYPE
  R0             3             112
  R1             1               5
  R2             0               4
  RX             0               9

Clustering(41) Variable = FANCD2 MUTATION ANALYSIS
D41V1, survival
                  sevent
clus2               0  1
  FANCD2 MUTATED    4  3
  FANCD2 WILD-TYPE 95 53
  FANCD2 MUTATED FANCD2 WILD-TYPE 
               7              148 
  FANCD2 MUTATED FANCD2 WILD-TYPE 
               3               53 
$`FANCD2 MUTATED`
TCGA-05-4396 TCGA-44-2656 TCGA-44-2659 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        9.96        46.98        44.94         3.19         8.09        37.15 
TCGA-64-1680 
       37.02 

$`FANCD2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 
       15.02         4.96        28.96        22.03         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        97.74       120.79 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       14.73        21.93        13.15        24.36        42.08        42.77 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
       38.24        23.51         6.21        23.74        13.71        12.59 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
       13.38        10.78         9.93        27.78        11.90         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
       12.16        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46         5.16        55.89        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        29.26        17.13        20.48        71.47        70.55 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81        31.04        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
       18.64        29.00        25.12        22.55        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-5774 TCGA-64-5775 
        0.79        56.81        20.65        39.09        87.98         2.04 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       42.90        28.41        51.25        28.44         0.99        20.02 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
       18.84        14.04        12.66         5.69         4.60        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        26.27        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 
        4.27         1.32         5.39         1.25        12.36        10.62 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33        10.16         2.60        13.71 

  FANCD2 MUTATED FANCD2 WILD-TYPE 
            3.19             0.07 
  FANCD2 MUTATED FANCD2 WILD-TYPE 
           46.98           120.79 
  FANCD2 MUTATED FANCD2 WILD-TYPE 
          37.020           20.565 
[1] "3.2 - 47.0 (37.0)"  "0.1 - 120.8 (20.6)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE"   "FANCD2 MUTATED" "FANCD2 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"FANCD2 WILD-TYPE"   "FANCD2 MUTATED" "FANCD2 WILD-TYPE"   "FANCD2 MUTATED" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE"   "FANCD2 MUTATED" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
  "FANCD2 MUTATED"   "FANCD2 MUTATED" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
  "FANCD2 MUTATED" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE"   "FANCD2 MUTATED" "FANCD2 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"FANCD2 WILD-TYPE"   "FANCD2 MUTATED" "FANCD2 WILD-TYPE"   "FANCD2 MUTATED" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE"   "FANCD2 MUTATED" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
  "FANCD2 MUTATED"   "FANCD2 MUTATED" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
  "FANCD2 MUTATED" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE"   "FANCD2 MUTATED" "FANCD2 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"FANCD2 WILD-TYPE"   "FANCD2 MUTATED" "FANCD2 WILD-TYPE"   "FANCD2 MUTATED" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE"   "FANCD2 MUTATED" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
  "FANCD2 MUTATED"   "FANCD2 MUTATED" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
  "FANCD2 MUTATED" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
[1] "hr=" "1.1"
D41V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  FANCD2 MUTATED          0        3         0         1          1          1
  FANCD2 WILD-TYPE       37       50        11        22         32          5
                  vv
clus               STAGE IV
  FANCD2 MUTATED          1
  FANCD2 WILD-TYPE        8
D41V3, multiclass
                  vv
clus                T1  T2  T3  T4
  FANCD2 MUTATED     1   5   0   1
  FANCD2 WILD-TYPE  40 104  14   7
D41V4, multiclass
    clus
vv   FANCD2 MUTATED FANCD2 WILD-TYPE
  T1              1               40
  T2              5              104
  T3              0               14
  T4              1                7
                  vv
clus               N0 N1 N2+N3
  FANCD2 MUTATED    3  2     2
  FANCD2 WILD-TYPE 92 35    33
D41V5, multiclass
       clus
vv      FANCD2 MUTATED FANCD2 WILD-TYPE
  N0                 3               92
  N1                 2               35
  N2+N3              2               33
                  vv
clus                M0  M1  MX
  FANCD2 MUTATED     6   1   0
  FANCD2 WILD-TYPE 137   8  18
D41V6, multiclass
    clus
vv   FANCD2 MUTATED FANCD2 WILD-TYPE
  M0              6              137
  M1              1                8
  MX              0               18
D41V7, binary
                  cls
clus                0  1
  FANCD2 MUTATED    2  5
  FANCD2 WILD-TYPE 91 74
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FANCD2 MUTATED      2    5
  FANCD2 WILD-TYPE   91   74
        clus
vv       FANCD2 MUTATED FANCD2 WILD-TYPE
  FEMALE              2               91
  MALE                5               74
D41V8, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  FANCD2 MUTATED                            0                                 2
  FANCD2 WILD-TYPE                          2                                37
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  FANCD2 MUTATED                                                    5
  FANCD2 WILD-TYPE                                                110
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  FANCD2 MUTATED                                            0
  FANCD2 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  FANCD2 MUTATED                                               0
  FANCD2 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  FANCD2 MUTATED                                0
  FANCD2 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  FANCD2 MUTATED                                    0
  FANCD2 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  FANCD2 MUTATED                              0                             0
  FANCD2 WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  FANCD2 MUTATED                                               0
  FANCD2 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  FANCD2 MUTATED                              0
  FANCD2 WILD-TYPE                            2
D41V9, multiclass
D41V10, binary
                  cls
clus                 0   1
  FANCD2 MUTATED     1   6
  FANCD2 WILD-TYPE  13 152
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FANCD2 MUTATED      1    6
  FANCD2 WILD-TYPE   13  152
     clus
vv    FANCD2 MUTATED FANCD2 WILD-TYPE
  NO               1               13
  YES              6              152
D41V11, continuous
D41V12, continuous
                  vv
clus                R0  R1  R2  RX
  FANCD2 MUTATED     6   0   0   0
  FANCD2 WILD-TYPE 109   6   4   9
D41V13, multiclass
    clus
vv   FANCD2 MUTATED FANCD2 WILD-TYPE
  R0              6              109
  R1              0                6
  R2              0                4
  RX              0                9

Clustering(42) Variable = MBD1 MUTATION ANALYSIS
D42V1, survival
                sevent
clus2             0  1
  MBD1 MUTATED    3  2
  MBD1 WILD-TYPE 96 54
  MBD1 MUTATED MBD1 WILD-TYPE 
             5            150 
  MBD1 MUTATED MBD1 WILD-TYPE 
             2             54 
$`MBD1 MUTATED`
TCGA-49-4487 TCGA-55-1592 TCGA-55-5899 TCGA-67-3771 TCGA-73-4662 
       28.11        23.05         2.86        20.02        29.95 

$`MBD1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       21.99        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 
       15.02        15.02         4.96        28.96        22.03         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        97.74 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
      120.79        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61        14.73        21.93        46.98        13.15        44.94 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
       24.36        42.08        42.77         3.19         8.09        37.15 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
       38.24        23.51         6.21        23.74        13.71        12.59 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
       13.38        10.78         9.93        27.78        11.90         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
       12.16        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46         5.16        55.89        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       29.26        17.13        20.48        71.47        70.55        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81        31.04        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12        18.64 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
       29.00        25.12        22.55        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 
       11.05        12.16         6.21        33.37        38.73        48.62 
TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
       45.17         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        87.98         2.04        42.90        28.41 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       51.25        28.44         0.99        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        5.69         4.60        13.87         2.01        52.57        23.38 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       26.27        15.35         4.27         1.32         5.39         1.25 
TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       12.36        10.62        41.33        10.16         2.60        13.71 

  MBD1 MUTATED MBD1 WILD-TYPE 
          2.86           0.07 
  MBD1 MUTATED MBD1 WILD-TYPE 
         29.95         120.79 
  MBD1 MUTATED MBD1 WILD-TYPE 
        23.050         20.565 
[1] "2.9 - 29.9 (23.1)"  "0.1 - 120.8 (20.6)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
  "MBD1 MUTATED" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"MBD1 WILD-TYPE"   "MBD1 MUTATED" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"MBD1 WILD-TYPE"   "MBD1 MUTATED" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
  "MBD1 MUTATED" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE"   "MBD1 MUTATED" "MBD1 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
  "MBD1 MUTATED" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"MBD1 WILD-TYPE"   "MBD1 MUTATED" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"MBD1 WILD-TYPE"   "MBD1 MUTATED" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
  "MBD1 MUTATED" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE"   "MBD1 MUTATED" "MBD1 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
  "MBD1 MUTATED" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"MBD1 WILD-TYPE"   "MBD1 MUTATED" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"MBD1 WILD-TYPE"   "MBD1 MUTATED" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
  "MBD1 MUTATED" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE"   "MBD1 MUTATED" "MBD1 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
[1] "hr=" "1.5"
D42V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  MBD1 MUTATED          5        1         0         0          0          0
  MBD1 WILD-TYPE       32       52        11        23         33          6
                vv
clus             STAGE IV
  MBD1 MUTATED          0
  MBD1 WILD-TYPE        9
D42V3, multiclass
                vv
clus              T1  T2  T3  T4
  MBD1 MUTATED     4   2   0   0
  MBD1 WILD-TYPE  37 107  14   8
D42V4, multiclass
    clus
vv   MBD1 MUTATED MBD1 WILD-TYPE
  T1            4             37
  T2            2            107
  T3            0             14
  T4            0              8
                vv
clus             N0 N1 N2+N3
  MBD1 MUTATED    5  1     0
  MBD1 WILD-TYPE 90 36    35
D42V5, multiclass
       clus
vv      MBD1 MUTATED MBD1 WILD-TYPE
  N0               5             90
  N1               1             36
  N2+N3            0             35
                vv
clus              M0  M1  MX
  MBD1 MUTATED     6   0   0
  MBD1 WILD-TYPE 137   9  18
D42V6, multiclass
    clus
vv   MBD1 MUTATED MBD1 WILD-TYPE
  M0            6            137
  M1            0              9
  MX            0             18
D42V7, binary
                cls
clus              0  1
  MBD1 MUTATED    3  3
  MBD1 WILD-TYPE 90 76
[1] "tbl2"
                cls
clus             [,1] [,2]
  MBD1 MUTATED      3    3
  MBD1 WILD-TYPE   90   76
        clus
vv       MBD1 MUTATED MBD1 WILD-TYPE
  FEMALE            3             90
  MALE              3             76
D42V8, continuous
[1] "Remove cluster labels:" "MBD1 MUTATED"          
clus
  MBD1 MUTATED MBD1 WILD-TYPE 
             1             11 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-64-1677 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-64-5778     TCGA-71-6725     TCGA-73-4659     TCGA-73-4666 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4676     TCGA-75-5122 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  MBD1 MUTATED                            0                                 0
  MBD1 WILD-TYPE                          2                                39
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  MBD1 MUTATED                                                    6
  MBD1 WILD-TYPE                                                109
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  MBD1 MUTATED                                            0
  MBD1 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  MBD1 MUTATED                                               0
  MBD1 WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  MBD1 MUTATED                                0
  MBD1 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  MBD1 MUTATED                                    0
  MBD1 WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  MBD1 MUTATED                              0                             0
  MBD1 WILD-TYPE                            2                             4
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  MBD1 MUTATED                                               0
  MBD1 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  MBD1 MUTATED                              0
  MBD1 WILD-TYPE                            2
D42V9, multiclass
D42V10, binary
                cls
clus               0   1
  MBD1 MUTATED     0   6
  MBD1 WILD-TYPE  14 152
[1] "tbl2"
                cls
clus             [,1] [,2]
  MBD1 MUTATED      0    6
  MBD1 WILD-TYPE   14  152
     clus
vv    MBD1 MUTATED MBD1 WILD-TYPE
  NO             0             14
  YES            6            152
D42V11, continuous
D42V12, continuous
                vv
clus              R0  R1  R2  RX
  MBD1 MUTATED     6   0   0   0
  MBD1 WILD-TYPE 109   6   4   9
D42V13, multiclass
    clus
vv   MBD1 MUTATED MBD1 WILD-TYPE
  R0            6            109
  R1            0              6
  R2            0              4
  RX            0              9

Clustering(43) Variable = ASTN2 MUTATION ANALYSIS
D43V1, survival
                 sevent
clus2              0  1
  ASTN2 MUTATED    8  6
  ASTN2 WILD-TYPE 91 50
  ASTN2 MUTATED ASTN2 WILD-TYPE 
             14             141 
  ASTN2 MUTATED ASTN2 WILD-TYPE 
              6              50 
$`ASTN2 MUTATED`
TCGA-05-4249 TCGA-05-4396 TCGA-05-4397 TCGA-05-4425 TCGA-05-4427 TCGA-38-4625 
       50.07         9.96        24.03        21.99        26.01        97.74 
TCGA-38-4631 TCGA-49-4487 TCGA-50-6593 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       11.64        28.11        11.05        42.90        28.41        51.25 
TCGA-73-4670 TCGA-91-6829 
        4.27        41.33 

$`ASTN2 WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4398 
        3.98        19.92        14.01        45.01        37.02        47.05 
TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
        8.02        19.00        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 
       29.95        12.00        30.02        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 
       24.00        15.02        15.02         4.96        28.96        22.03 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 
      120.79        37.71        49.02        28.37        35.28        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       14.73        21.93        46.98        13.15        44.94        24.36 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       42.08        42.77         3.19         8.09        37.15        38.24 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
       23.51         6.21        23.74        13.71        12.59        13.38 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
       10.78         9.93        27.78        11.90         5.42        12.16 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4488 
       63.72        32.45        36.49        16.41        76.21        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46         5.16        55.89        15.02        12.13        29.26 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
       17.13        20.48        71.47        70.55        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       31.04        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12        18.64        29.00 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6594 
       25.12        22.55        42.31         3.88        25.51        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5815 TCGA-67-3770 
       39.09        37.02        87.98         2.04        28.44         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       20.02        18.84        14.04        12.66         5.69         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        26.27 
TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 
       15.35         1.32         5.39         1.25        12.36        10.62 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       10.16         2.60        13.71 

  ASTN2 MUTATED ASTN2 WILD-TYPE 
           4.27            0.07 
  ASTN2 MUTATED ASTN2 WILD-TYPE 
          97.74          120.79 
  ASTN2 MUTATED ASTN2 WILD-TYPE 
          27.06           20.02 
[1] "4.3 - 97.7 (27.1)"  "0.1 - 120.8 (20.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED"   "ASTN2 MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"ASTN2 WILD-TYPE"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"ASTN2 WILD-TYPE"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
  "ASTN2 MUTATED"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"ASTN2 WILD-TYPE"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED"   "ASTN2 MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"ASTN2 WILD-TYPE"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"ASTN2 WILD-TYPE"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
  "ASTN2 MUTATED"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"ASTN2 WILD-TYPE"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED"   "ASTN2 MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"ASTN2 WILD-TYPE"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
  "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"ASTN2 WILD-TYPE"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
  "ASTN2 MUTATED"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"ASTN2 WILD-TYPE"   "ASTN2 MUTATED" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE"   "ASTN2 MUTATED" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
[1] "hr=" "1.2"
D43V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  ASTN2 MUTATED          1        7         0         2          2          1
  ASTN2 WILD-TYPE       36       46        11        21         31          5
                 vv
clus              STAGE IV
  ASTN2 MUTATED          2
  ASTN2 WILD-TYPE        7
D43V3, multiclass
                 vv
clus              T1 T2 T3 T4
  ASTN2 MUTATED    2 12  0  1
  ASTN2 WILD-TYPE 39 97 14  7
D43V4, multiclass
    clus
vv   ASTN2 MUTATED ASTN2 WILD-TYPE
  T1             2              39
  T2            12              97
  T3             0              14
  T4             1               7
                 vv
clus              N0 N1 N2+N3
  ASTN2 MUTATED   10  3     2
  ASTN2 WILD-TYPE 85 34    33
D43V5, multiclass
       clus
vv      ASTN2 MUTATED ASTN2 WILD-TYPE
  N0               10              85
  N1                3              34
  N2+N3             2              33
                 vv
clus               M0  M1  MX
  ASTN2 MUTATED    12   2   1
  ASTN2 WILD-TYPE 131   7  17
D43V6, multiclass
    clus
vv   ASTN2 MUTATED ASTN2 WILD-TYPE
  M0            12             131
  M1             2               7
  MX             1              17
D43V7, binary
                 cls
clus               0  1
  ASTN2 MUTATED    9  6
  ASTN2 WILD-TYPE 84 73
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ASTN2 MUTATED      9    6
  ASTN2 WILD-TYPE   84   73
        clus
vv       ASTN2 MUTATED ASTN2 WILD-TYPE
  FEMALE             9              84
  MALE               6              73
D43V8, continuous
[1] "Remove cluster labels:" "ASTN2 MUTATED"         
clus
  ASTN2 MUTATED ASTN2 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  ASTN2 MUTATED                            1                                 6
  ASTN2 WILD-TYPE                          1                                33
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ASTN2 MUTATED                                                    6
  ASTN2 WILD-TYPE                                                109
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  ASTN2 MUTATED                                            0
  ASTN2 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  ASTN2 MUTATED                                               2
  ASTN2 WILD-TYPE                                             0
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  ASTN2 MUTATED                                0
  ASTN2 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  ASTN2 MUTATED                                    0
  ASTN2 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  ASTN2 MUTATED                              0                             0
  ASTN2 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  ASTN2 MUTATED                                               0
  ASTN2 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  ASTN2 MUTATED                              0
  ASTN2 WILD-TYPE                            2
D43V9, multiclass
D43V10, binary
                 cls
clus                0   1
  ASTN2 MUTATED     1  14
  ASTN2 WILD-TYPE  13 144
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ASTN2 MUTATED      1   14
  ASTN2 WILD-TYPE   13  144
     clus
vv    ASTN2 MUTATED ASTN2 WILD-TYPE
  NO              1              13
  YES            14             144
D43V11, continuous
D43V12, continuous
                 vv
clus               R0  R1  R2  RX
  ASTN2 MUTATED    14   1   0   0
  ASTN2 WILD-TYPE 101   5   4   9
D43V13, multiclass
    clus
vv   ASTN2 MUTATED ASTN2 WILD-TYPE
  R0            14             101
  R1             1               5
  R2             0               4
  RX             0               9

Clustering(44) Variable = MLL3 MUTATION ANALYSIS
D44V1, survival
                sevent
clus2             0  1
  MLL3 MUTATED   17 14
  MLL3 WILD-TYPE 82 42
  MLL3 MUTATED MLL3 WILD-TYPE 
            31            124 
  MLL3 MUTATED MLL3 WILD-TYPE 
            14             42 
$`MLL3 MUTATED`
TCGA-05-4249 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 TCGA-05-4424 TCGA-05-4427 
       50.07        14.01         9.96        24.03        30.02        26.01 
TCGA-05-4434 TCGA-35-4123 TCGA-38-4628 TCGA-38-4632 TCGA-44-2656 TCGA-44-2657 
       15.02         5.95        49.02        44.61        46.98        13.15 
TCGA-44-3396 TCGA-44-6777 TCGA-49-4506 TCGA-49-6744 TCGA-50-5045 TCGA-50-5049 
       37.15        32.45        32.84        29.26        71.47        70.55 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5939 TCGA-50-6594 TCGA-64-1677 TCGA-64-1678 
        9.27         8.78        15.12        12.16        20.65        39.09 
TCGA-64-5781 TCGA-67-3770 TCGA-67-3771 TCGA-67-6217 TCGA-71-6725 TCGA-91-6829 
       51.25         0.99        20.02        13.87         2.01        41.33 
TCGA-91-6836 
       13.71 

$`MLL3 WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4389 TCGA-05-4390 TCGA-05-4398 TCGA-05-4402 
        3.98        19.92        45.01        37.02        47.05         8.02 
TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
       19.00        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       12.00        21.99        26.01        25.02        25.02        24.00 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 
       15.02         4.96        28.96        22.03         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         8.68        97.74       120.79        37.71 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-44-2655 TCGA-44-2659 
       28.37        35.28        11.64        14.73        21.93        44.94 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3398 
       24.36        42.08        42.77         3.19         8.09        38.24 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
       23.51         6.21        23.74        13.71        12.59        13.38 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
       10.78         9.93        27.78        11.90         5.42        12.16 
TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       63.72        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4507 TCGA-49-4510 
       12.66        35.54        46.72        14.07         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6745 TCGA-50-5044 
        5.16        55.89        15.02        12.13        17.13        20.48 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5932 
       14.96        25.81        31.04        49.28         8.05        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       77.88        21.47         8.45        18.64        29.00        25.12 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 
       22.55        42.31         3.88        25.51        11.05         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1680 TCGA-64-5774 
        0.07        32.61         0.79        56.81        37.02        87.98 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3772 TCGA-67-3773 
        2.04        42.90        28.41        28.44        18.84        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
       12.66         5.69         4.60        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       26.27        15.35         4.27         1.32         5.39         1.25 
TCGA-86-6562 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 
       12.36        10.62        10.16         2.60 

  MLL3 MUTATED MLL3 WILD-TYPE 
          0.99           0.07 
  MLL3 MUTATED MLL3 WILD-TYPE 
         71.47         120.79 
  MLL3 MUTATED MLL3 WILD-TYPE 
        24.030         20.265 
[1] "1.0 - 71.5 (24.0)"  "0.1 - 120.8 (20.3)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED"   "MLL3 MUTATED" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"MLL3 WILD-TYPE"   "MLL3 MUTATED"   "MLL3 MUTATED" "MLL3 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
  "MLL3 MUTATED"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED"   "MLL3 MUTATED" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE"   "MLL3 MUTATED" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED"   "MLL3 MUTATED" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED"   "MLL3 MUTATED" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"MLL3 WILD-TYPE"   "MLL3 MUTATED"   "MLL3 MUTATED" "MLL3 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
  "MLL3 MUTATED"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED"   "MLL3 MUTATED" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE"   "MLL3 MUTATED" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED"   "MLL3 MUTATED" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED"   "MLL3 MUTATED" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"MLL3 WILD-TYPE"   "MLL3 MUTATED"   "MLL3 MUTATED" "MLL3 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
  "MLL3 MUTATED"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED"   "MLL3 MUTATED" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"MLL3 WILD-TYPE"   "MLL3 MUTATED" "MLL3 WILD-TYPE"   "MLL3 MUTATED" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
  "MLL3 MUTATED" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED"   "MLL3 MUTATED" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"MLL3 WILD-TYPE" "MLL3 WILD-TYPE"   "MLL3 MUTATED" 
[1] "hr=" "1.1"
D44V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  MLL3 MUTATED          5       12         3         5          6          1
  MLL3 WILD-TYPE       32       41         8        18         27          5
                vv
clus             STAGE IV
  MLL3 MUTATED          2
  MLL3 WILD-TYPE        7
D44V3, multiclass
                vv
clus             T1 T2 T3 T4
  MLL3 MUTATED    3 25  4  2
  MLL3 WILD-TYPE 38 84 10  6
D44V4, multiclass
    clus
vv   MLL3 MUTATED MLL3 WILD-TYPE
  T1            3             38
  T2           25             84
  T3            4             10
  T4            2              6
                vv
clus             N0 N1 N2+N3
  MLL3 MUTATED   16 10     6
  MLL3 WILD-TYPE 79 27    29
D44V5, multiclass
       clus
vv      MLL3 MUTATED MLL3 WILD-TYPE
  N0              16             79
  N1              10             27
  N2+N3            6             29
                vv
clus              M0  M1  MX
  MLL3 MUTATED    28   2   4
  MLL3 WILD-TYPE 115   7  14
D44V6, multiclass
    clus
vv   MLL3 MUTATED MLL3 WILD-TYPE
  M0           28            115
  M1            2              7
  MX            4             14
D44V7, binary
                cls
clus              0  1
  MLL3 MUTATED   20 14
  MLL3 WILD-TYPE 73 65
[1] "tbl2"
                cls
clus             [,1] [,2]
  MLL3 MUTATED     20   14
  MLL3 WILD-TYPE   73   65
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  FEMALE           20             73
  MALE             14             65
D44V8, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  MLL3 MUTATED                            0                                10
  MLL3 WILD-TYPE                          2                                29
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  MLL3 MUTATED                                                   21
  MLL3 WILD-TYPE                                                 94
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  MLL3 MUTATED                                            0
  MLL3 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  MLL3 MUTATED                                               1
  MLL3 WILD-TYPE                                             1
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  MLL3 MUTATED                                0
  MLL3 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  MLL3 MUTATED                                    0
  MLL3 WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  MLL3 MUTATED                              0                             2
  MLL3 WILD-TYPE                            2                             2
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  MLL3 MUTATED                                               0
  MLL3 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  MLL3 MUTATED                              0
  MLL3 WILD-TYPE                            2
D44V9, multiclass
D44V10, binary
                cls
clus               0   1
  MLL3 MUTATED     4  30
  MLL3 WILD-TYPE  10 128
[1] "tbl2"
                cls
clus             [,1] [,2]
  MLL3 MUTATED      4   30
  MLL3 WILD-TYPE   10  128
     clus
vv    MLL3 MUTATED MLL3 WILD-TYPE
  NO             4             10
  YES           30            128
D44V11, continuous
D44V12, continuous
                vv
clus             R0 R1 R2 RX
  MLL3 MUTATED   20  2  2  2
  MLL3 WILD-TYPE 95  4  2  7
D44V13, multiclass
    clus
vv   MLL3 MUTATED MLL3 WILD-TYPE
  R0           20             95
  R1            2              4
  R2            2              2
  RX            2              7

Clustering(45) Variable = FLI1 MUTATION ANALYSIS
D45V1, survival
                sevent
clus2             0  1
  FLI1 MUTATED    5  1
  FLI1 WILD-TYPE 94 55
  FLI1 MUTATED FLI1 WILD-TYPE 
             6            149 
  FLI1 MUTATED FLI1 WILD-TYPE 
             1             55 
$`FLI1 MUTATED`
TCGA-05-4420 TCGA-05-4424 TCGA-44-2661 TCGA-44-3398 TCGA-44-3918 TCGA-50-5045 
       29.95        30.02        24.36        38.24        23.51        71.47 

$`FLI1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 
        2.96        14.93         8.98        12.00        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        4.96        28.96        22.03         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61        14.73 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2662 TCGA-44-2665 
       21.93        46.98        13.15        44.94        42.08        42.77 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
        3.19         8.09        37.15         6.21        23.74        13.71 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
       12.59        13.38        10.78         9.93        27.78        11.90 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42        12.16        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46         5.16        55.89 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5049 
       15.02        12.13        29.26        17.13        20.48        70.55 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81        31.04        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
       18.64        29.00        25.12        22.55        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        87.98 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        2.04        42.90        28.41        51.25        28.44         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       20.02        18.84        14.04        12.66         5.69         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        26.27 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 
       15.35         4.27         1.32         5.39         1.25        12.36 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       10.62        41.33        10.16         2.60        13.71 

  FLI1 MUTATED FLI1 WILD-TYPE 
         23.51           0.07 
  FLI1 MUTATED FLI1 WILD-TYPE 
         71.47         120.79 
  FLI1 MUTATED FLI1 WILD-TYPE 
        29.985         20.020 
[1] "23.5 - 71.5 (30.0)" "0.1 - 120.8 (20.0)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE"   "FLI1 MUTATED" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"FLI1 WILD-TYPE"   "FLI1 MUTATED" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
  "FLI1 MUTATED" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE"   "FLI1 MUTATED"   "FLI1 MUTATED" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
  "FLI1 MUTATED" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE"   "FLI1 MUTATED" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"FLI1 WILD-TYPE"   "FLI1 MUTATED" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
  "FLI1 MUTATED" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE"   "FLI1 MUTATED"   "FLI1 MUTATED" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
  "FLI1 MUTATED" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE"   "FLI1 MUTATED" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"FLI1 WILD-TYPE"   "FLI1 MUTATED" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
  "FLI1 MUTATED" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE"   "FLI1 MUTATED"   "FLI1 MUTATED" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
  "FLI1 MUTATED" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
[1] "hr=" "3.4"
D45V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  FLI1 MUTATED          4        1         0         1          0          0
  FLI1 WILD-TYPE       33       52        11        22         33          6
                vv
clus             STAGE IV
  FLI1 MUTATED          0
  FLI1 WILD-TYPE        9
D45V3, multiclass
                vv
clus              T1  T2  T3  T4
  FLI1 MUTATED     3   2   1   0
  FLI1 WILD-TYPE  38 107  13   8
D45V4, multiclass
    clus
vv   FLI1 MUTATED FLI1 WILD-TYPE
  T1            3             38
  T2            2            107
  T3            1             13
  T4            0              8
                vv
clus             N0 N1 N2+N3
  FLI1 MUTATED    5  1     0
  FLI1 WILD-TYPE 90 36    35
D45V5, multiclass
       clus
vv      FLI1 MUTATED FLI1 WILD-TYPE
  N0               5             90
  N1               1             36
  N2+N3            0             35
                vv
clus              M0  M1  MX
  FLI1 MUTATED     6   0   0
  FLI1 WILD-TYPE 137   9  18
D45V6, multiclass
    clus
vv   FLI1 MUTATED FLI1 WILD-TYPE
  M0            6            137
  M1            0              9
  MX            0             18
D45V7, binary
                cls
clus              0  1
  FLI1 MUTATED    4  2
  FLI1 WILD-TYPE 89 77
[1] "tbl2"
                cls
clus             [,1] [,2]
  FLI1 MUTATED      4    2
  FLI1 WILD-TYPE   89   77
        clus
vv       FLI1 MUTATED FLI1 WILD-TYPE
  FEMALE            4             89
  MALE              2             77
D45V8, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  FLI1 MUTATED                            0                                 2
  FLI1 WILD-TYPE                          2                                37
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  FLI1 MUTATED                                                    4
  FLI1 WILD-TYPE                                                111
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  FLI1 MUTATED                                            0
  FLI1 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  FLI1 MUTATED                                               0
  FLI1 WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  FLI1 MUTATED                                0
  FLI1 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  FLI1 MUTATED                                    0
  FLI1 WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  FLI1 MUTATED                              0                             0
  FLI1 WILD-TYPE                            2                             4
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  FLI1 MUTATED                                               0
  FLI1 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  FLI1 MUTATED                              0
  FLI1 WILD-TYPE                            2
D45V9, multiclass
D45V10, binary
                cls
clus               0   1
  FLI1 MUTATED     1   5
  FLI1 WILD-TYPE  13 153
[1] "tbl2"
                cls
clus             [,1] [,2]
  FLI1 MUTATED      1    5
  FLI1 WILD-TYPE   13  153
     clus
vv    FLI1 MUTATED FLI1 WILD-TYPE
  NO             1             13
  YES            5            153
D45V11, continuous
D45V12, continuous
                vv
clus              R0  R1  R2  RX
  FLI1 MUTATED     4   1   0   0
  FLI1 WILD-TYPE 111   5   4   9
D45V13, multiclass
    clus
vv   FLI1 MUTATED FLI1 WILD-TYPE
  R0            4            111
  R1            1              5
  R2            0              4
  RX            0              9

Clustering(46) Variable = LAX1 MUTATION ANALYSIS
D46V1, survival
                sevent
clus2             0  1
  LAX1 MUTATED    4  0
  LAX1 WILD-TYPE 95 56
  LAX1 MUTATED LAX1 WILD-TYPE 
             4            151 
  LAX1 MUTATED LAX1 WILD-TYPE 
             0             56 
$`LAX1 MUTATED`
TCGA-05-4382 TCGA-38-4626 TCGA-44-2659 TCGA-67-3770 
       19.92       120.79        44.94         0.99 

$`LAX1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 
       50.07         3.98        14.01        45.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 
       15.02         4.96        28.96        22.03         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 
        0.46         7.36         5.95         8.68        97.74        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61        14.73 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       21.93        46.98        13.15        24.36        42.08        42.77 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        37.15        38.24        23.51         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
       23.74        13.71        12.59        13.38        10.78         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
       27.78        11.90         5.42        12.16        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
        5.16        55.89        15.02        12.13        29.26        17.13 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        70.55        14.96        25.81        31.04 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12        18.64        29.00        25.12 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       22.55        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        87.98         2.04        42.90        28.41 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       51.25        28.44        20.02        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        5.69         4.60        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        26.27        15.35         4.27         1.32         5.39 
TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.25        12.36        10.62        41.33        10.16         2.60 
TCGA-91-6836 
       13.71 

  LAX1 MUTATED LAX1 WILD-TYPE 
          0.99           0.07 
  LAX1 MUTATED LAX1 WILD-TYPE 
        120.79          97.74 
  LAX1 MUTATED LAX1 WILD-TYPE 
         32.43          20.65 
[1] "1.0 - 120.8 (32.4)" "0.1 - 97.7 (20.6)" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE"   "LAX1 MUTATED" "LAX1 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
  "LAX1 MUTATED" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE"   "LAX1 MUTATED" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE"   "LAX1 MUTATED" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE"   "LAX1 MUTATED" "LAX1 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
  "LAX1 MUTATED" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE"   "LAX1 MUTATED" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE"   "LAX1 MUTATED" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE"   "LAX1 MUTATED" "LAX1 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
  "LAX1 MUTATED" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE"   "LAX1 MUTATED" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE"   "LAX1 MUTATED" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
[1] "hr="     "2.8e+07"
D46V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  LAX1 MUTATED          1        2         1         2          0          0
  LAX1 WILD-TYPE       36       51        10        21         33          6
                vv
clus             STAGE IV
  LAX1 MUTATED          0
  LAX1 WILD-TYPE        9
D46V3, multiclass
                vv
clus              T1  T2  T3  T4
  LAX1 MUTATED     2   2   2   0
  LAX1 WILD-TYPE  39 107  12   8
D46V4, multiclass
    clus
vv   LAX1 MUTATED LAX1 WILD-TYPE
  T1            2             39
  T2            2            107
  T3            2             12
  T4            0              8
                vv
clus             N0 N1 N2+N3
  LAX1 MUTATED    5  1     0
  LAX1 WILD-TYPE 90 36    35
D46V5, multiclass
       clus
vv      LAX1 MUTATED LAX1 WILD-TYPE
  N0               5             90
  N1               1             36
  N2+N3            0             35
                vv
clus              M0  M1  MX
  LAX1 MUTATED     5   0   1
  LAX1 WILD-TYPE 138   9  17
D46V6, multiclass
    clus
vv   LAX1 MUTATED LAX1 WILD-TYPE
  M0            5            138
  M1            0              9
  MX            1             17
D46V7, binary
                cls
clus              0  1
  LAX1 MUTATED    4  2
  LAX1 WILD-TYPE 89 77
[1] "tbl2"
                cls
clus             [,1] [,2]
  LAX1 MUTATED      4    2
  LAX1 WILD-TYPE   89   77
        clus
vv       LAX1 MUTATED LAX1 WILD-TYPE
  FEMALE            4             89
  MALE              2             77
D46V8, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  LAX1 MUTATED                            0                                 1
  LAX1 WILD-TYPE                          2                                38
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  LAX1 MUTATED                                                    5
  LAX1 WILD-TYPE                                                110
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  LAX1 MUTATED                                            0
  LAX1 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  LAX1 MUTATED                                               0
  LAX1 WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  LAX1 MUTATED                                0
  LAX1 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  LAX1 MUTATED                                    0
  LAX1 WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  LAX1 MUTATED                              0                             0
  LAX1 WILD-TYPE                            2                             4
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  LAX1 MUTATED                                               0
  LAX1 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  LAX1 MUTATED                              0
  LAX1 WILD-TYPE                            2
D46V9, multiclass
D46V10, binary
                cls
clus               0   1
  LAX1 MUTATED     0   6
  LAX1 WILD-TYPE  14 152
[1] "tbl2"
                cls
clus             [,1] [,2]
  LAX1 MUTATED      0    6
  LAX1 WILD-TYPE   14  152
     clus
vv    LAX1 MUTATED LAX1 WILD-TYPE
  NO             0             14
  YES            6            152
D46V11, continuous
D46V12, continuous
[1] "Remove cluster labels:" "LAX1 MUTATED"          
clus
  LAX1 MUTATED LAX1 WILD-TYPE 
             2             66 
    TCGA-05-4384     TCGA-05-4390     TCGA-05-4396     TCGA-05-4405 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-4410     TCGA-05-4415     TCGA-05-4417     TCGA-05-4424 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4433     TCGA-05-5420     TCGA-05-5423 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-5425     TCGA-05-5428     TCGA-35-4122     TCGA-35-4123 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-35-5375     TCGA-38-4625     TCGA-44-2655     TCGA-44-2656 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2662     TCGA-44-2666     TCGA-44-2668 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-4112 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-5645     TCGA-44-6144     TCGA-44-6145     TCGA-44-6147 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-49-4494     TCGA-49-4505     TCGA-55-1592     TCGA-55-1594 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-55-1595     TCGA-55-1596     TCGA-55-5899     TCGA-55-6642 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-64-5781     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-91-6829     TCGA-91-6836 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
                vv
clus              R0  R1  R2  RX
  LAX1 MUTATED     6   0   0   0
  LAX1 WILD-TYPE 109   6   4   9
D46V13, multiclass
    clus
vv   LAX1 MUTATED LAX1 WILD-TYPE
  R0            6            109
  R1            0              6
  R2            0              4
  RX            0              9

Clustering(47) Variable = SVOP MUTATION ANALYSIS
D47V1, survival
                sevent
clus2             0  1
  SVOP MUTATED    4  2
  SVOP WILD-TYPE 95 54
  SVOP MUTATED SVOP WILD-TYPE 
             6            149 
  SVOP MUTATED SVOP WILD-TYPE 
             2             54 
$`SVOP MUTATED`
TCGA-05-4398 TCGA-05-4418 TCGA-05-4427 TCGA-35-5375 TCGA-49-4487 TCGA-55-6712 
       47.05         8.98        26.01         8.68        28.11         0.79 

$`SVOP WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
        9.96        24.03         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
       14.93        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02        15.02         4.96 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
       28.96        22.03         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        5.95        97.74       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61        14.73        21.93        46.98 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        44.94        24.36        42.08        42.77         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        37.15        38.24        23.51         6.21        23.74 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       13.71        12.59        13.38        10.78         9.93        27.78 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
       11.90         5.42        12.16        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       16.41        76.21        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46         5.16        55.89 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        29.26        17.13        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       70.55        14.96        25.81        31.04        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12        18.64        29.00        25.12        22.55        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
       32.61        56.81        20.65        39.09        37.02        87.98 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        2.04        42.90        28.41        51.25        28.44         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       20.02        18.84        14.04        12.66         5.69         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        26.27 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 
       15.35         4.27         1.32         5.39         1.25        12.36 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       10.62        41.33        10.16         2.60        13.71 

  SVOP MUTATED SVOP WILD-TYPE 
          0.79           0.07 
  SVOP MUTATED SVOP WILD-TYPE 
         47.05         120.79 
  SVOP MUTATED SVOP WILD-TYPE 
        17.495         20.650 
[1] "0.8 - 47.0 (17.5)"  "0.1 - 120.8 (20.6)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
  "SVOP MUTATED" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"SVOP WILD-TYPE" "SVOP WILD-TYPE"   "SVOP MUTATED" "SVOP WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "SVOP MUTATED" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"SVOP WILD-TYPE" "SVOP WILD-TYPE"   "SVOP MUTATED" "SVOP WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
  "SVOP MUTATED" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
  "SVOP MUTATED" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
  "SVOP MUTATED" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"SVOP WILD-TYPE" "SVOP WILD-TYPE"   "SVOP MUTATED" "SVOP WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "SVOP MUTATED" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"SVOP WILD-TYPE" "SVOP WILD-TYPE"   "SVOP MUTATED" "SVOP WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
  "SVOP MUTATED" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
  "SVOP MUTATED" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
  "SVOP MUTATED" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"SVOP WILD-TYPE" "SVOP WILD-TYPE"   "SVOP MUTATED" "SVOP WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "SVOP MUTATED" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"SVOP WILD-TYPE" "SVOP WILD-TYPE"   "SVOP MUTATED" "SVOP WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
  "SVOP MUTATED" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
  "SVOP MUTATED" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
[1] "hr=" "1.2"
D47V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  SVOP MUTATED          1        1         1         1          2          1
  SVOP WILD-TYPE       36       52        10        22         31          5
                vv
clus             STAGE IV
  SVOP MUTATED          0
  SVOP WILD-TYPE        9
D47V3, multiclass
                vv
clus              T1  T2  T3  T4
  SVOP MUTATED     1   4   1   1
  SVOP WILD-TYPE  40 105  13   7
D47V4, multiclass
    clus
vv   SVOP MUTATED SVOP WILD-TYPE
  T1            1             40
  T2            4            105
  T3            1             13
  T4            1              7
                vv
clus             N0 N1 N2+N3
  SVOP MUTATED    2  2     3
  SVOP WILD-TYPE 93 35    32
D47V5, multiclass
       clus
vv      SVOP MUTATED SVOP WILD-TYPE
  N0               2             93
  N1               2             35
  N2+N3            3             32
                vv
clus              M0  M1  MX
  SVOP MUTATED     6   0   1
  SVOP WILD-TYPE 137   9  17
D47V6, multiclass
    clus
vv   SVOP MUTATED SVOP WILD-TYPE
  M0            6            137
  M1            0              9
  MX            1             17
D47V7, binary
                cls
clus              0  1
  SVOP MUTATED    3  4
  SVOP WILD-TYPE 90 75
[1] "tbl2"
                cls
clus             [,1] [,2]
  SVOP MUTATED      3    4
  SVOP WILD-TYPE   90   75
        clus
vv       SVOP MUTATED SVOP WILD-TYPE
  FEMALE            3             90
  MALE              4             75
D47V8, continuous
[1] "Remove cluster labels:" "SVOP MUTATED"          
clus
  SVOP MUTATED SVOP WILD-TYPE 
             1             11 
    TCGA-35-4122     TCGA-35-4123     TCGA-64-1677     TCGA-64-5778 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-71-6725     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4676     TCGA-75-5122 
"SVOP WILD-TYPE" "SVOP WILD-TYPE" "SVOP WILD-TYPE" 
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  SVOP MUTATED                            0                                 4
  SVOP WILD-TYPE                          2                                35
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SVOP MUTATED                                                    3
  SVOP WILD-TYPE                                                112
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  SVOP MUTATED                                            0
  SVOP WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  SVOP MUTATED                                               0
  SVOP WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  SVOP MUTATED                                0
  SVOP WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  SVOP MUTATED                                    0
  SVOP WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  SVOP MUTATED                              0                             0
  SVOP WILD-TYPE                            2                             4
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  SVOP MUTATED                                               0
  SVOP WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  SVOP MUTATED                              0
  SVOP WILD-TYPE                            2
D47V9, multiclass
D47V10, binary
                cls
clus               0   1
  SVOP MUTATED     0   7
  SVOP WILD-TYPE  14 151
[1] "tbl2"
                cls
clus             [,1] [,2]
  SVOP MUTATED      0    7
  SVOP WILD-TYPE   14  151
     clus
vv    SVOP MUTATED SVOP WILD-TYPE
  NO             0             14
  YES            7            151
D47V11, continuous
D47V12, continuous
                vv
clus              R0  R1  R2  RX
  SVOP MUTATED     5   0   0   1
  SVOP WILD-TYPE 110   6   4   8
D47V13, multiclass
    clus
vv   SVOP MUTATED SVOP WILD-TYPE
  R0            5            110
  R1            0              6
  R2            0              4
  RX            1              8

Clustering(48) Variable = MTTP MUTATION ANALYSIS
D48V1, survival
                sevent
clus2             0  1
  MTTP MUTATED    3  2
  MTTP WILD-TYPE 96 54
  MTTP MUTATED MTTP WILD-TYPE 
             5            150 
  MTTP MUTATED MTTP WILD-TYPE 
             2             54 
$`MTTP MUTATED`
TCGA-05-4396 TCGA-49-4487 TCGA-50-5049 TCGA-64-1680 TCGA-67-3774 
        9.96        28.11        70.55        37.02        12.66 

$`MTTP WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 
       15.02         4.96        28.96        22.03         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        97.74       120.79 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       14.73        21.93        46.98        13.15        44.94        24.36 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       42.08        42.77         3.19         8.09        37.15        38.24 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
       23.51         6.21        23.74        13.71        12.59        13.38 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
       10.78         9.93        27.78        11.90         5.42        12.16 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4488 
       63.72        32.45        36.49        16.41        76.21        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46         5.16        55.89        15.02        12.13        29.26 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       17.13        20.48        71.47        14.96        25.81        31.04 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12        18.64        29.00        25.12 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       22.55        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       39.09        87.98         2.04        42.90        28.41        51.25 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-6215 
       28.44         0.99        20.02        18.84        14.04         5.69 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        4.60        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       26.27        15.35         4.27         1.32         5.39         1.25 
TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       12.36        10.62        41.33        10.16         2.60        13.71 

  MTTP MUTATED MTTP WILD-TYPE 
          9.96           0.07 
  MTTP MUTATED MTTP WILD-TYPE 
         70.55         120.79 
  MTTP MUTATED MTTP WILD-TYPE 
        28.110         20.565 
[1] "10.0 - 70.5 (28.1)" "0.1 - 120.8 (20.6)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"MTTP WILD-TYPE" "MTTP WILD-TYPE"   "MTTP MUTATED" "MTTP WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
  "MTTP MUTATED" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"MTTP WILD-TYPE"   "MTTP MUTATED" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
  "MTTP MUTATED" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE"   "MTTP MUTATED" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"MTTP WILD-TYPE" "MTTP WILD-TYPE"   "MTTP MUTATED" "MTTP WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
  "MTTP MUTATED" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"MTTP WILD-TYPE"   "MTTP MUTATED" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
  "MTTP MUTATED" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE"   "MTTP MUTATED" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"MTTP WILD-TYPE" "MTTP WILD-TYPE"   "MTTP MUTATED" "MTTP WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
  "MTTP MUTATED" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"MTTP WILD-TYPE"   "MTTP MUTATED" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
  "MTTP MUTATED" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE"   "MTTP MUTATED" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
[1] "hr=" "1.1"
D48V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  MTTP MUTATED          2        2         0         0          0          1
  MTTP WILD-TYPE       35       51        11        23         33          5
                vv
clus             STAGE IV
  MTTP MUTATED          1
  MTTP WILD-TYPE        8
D48V3, multiclass
                vv
clus              T1  T2  T3  T4
  MTTP MUTATED     1   4   0   1
  MTTP WILD-TYPE  40 105  14   7
D48V4, multiclass
    clus
vv   MTTP MUTATED MTTP WILD-TYPE
  T1            1             40
  T2            4            105
  T3            0             14
  T4            1              7
                vv
clus             N0 N1 N2+N3
  MTTP MUTATED    4  1     1
  MTTP WILD-TYPE 91 36    34
D48V5, multiclass
       clus
vv      MTTP MUTATED MTTP WILD-TYPE
  N0               4             91
  N1               1             36
  N2+N3            1             34
                vv
clus              M0  M1  MX
  MTTP MUTATED     5   1   0
  MTTP WILD-TYPE 138   8  18
D48V6, multiclass
    clus
vv   MTTP MUTATED MTTP WILD-TYPE
  M0            5            138
  M1            1              8
  MX            0             18
D48V7, binary
                cls
clus              0  1
  MTTP MUTATED    2  4
  MTTP WILD-TYPE 91 75
[1] "tbl2"
                cls
clus             [,1] [,2]
  MTTP MUTATED      2    4
  MTTP WILD-TYPE   91   75
        clus
vv       MTTP MUTATED MTTP WILD-TYPE
  FEMALE            2             91
  MALE              4             75
D48V8, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  MTTP MUTATED                            0                                 3
  MTTP WILD-TYPE                          2                                36
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  MTTP MUTATED                                                    3
  MTTP WILD-TYPE                                                112
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  MTTP MUTATED                                            0
  MTTP WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  MTTP MUTATED                                               0
  MTTP WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  MTTP MUTATED                                0
  MTTP WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  MTTP MUTATED                                    0
  MTTP WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  MTTP MUTATED                              0                             0
  MTTP WILD-TYPE                            2                             4
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  MTTP MUTATED                                               0
  MTTP WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  MTTP MUTATED                              0
  MTTP WILD-TYPE                            2
D48V9, multiclass
D48V10, binary
                cls
clus               0   1
  MTTP MUTATED     2   4
  MTTP WILD-TYPE  12 154
[1] "tbl2"
                cls
clus             [,1] [,2]
  MTTP MUTATED      2    4
  MTTP WILD-TYPE   12  154
     clus
vv    MTTP MUTATED MTTP WILD-TYPE
  NO             2             12
  YES            4            154
D48V11, continuous
D48V12, continuous
                vv
clus              R0  R1  R2  RX
  MTTP MUTATED     3   0   0   2
  MTTP WILD-TYPE 112   6   4   7
D48V13, multiclass
    clus
vv   MTTP MUTATED MTTP WILD-TYPE
  R0            3            112
  R1            0              6
  R2            0              4
  RX            2              7

Clustering(49) Variable = COL19A1 MUTATION ANALYSIS
D49V1, survival
                   sevent
clus2                0  1
  COL19A1 MUTATED    8  5
  COL19A1 WILD-TYPE 91 51
  COL19A1 MUTATED COL19A1 WILD-TYPE 
               13               142 
  COL19A1 MUTATED COL19A1 WILD-TYPE 
                5                51 
$`COL19A1 MUTATED`
TCGA-05-4390 TCGA-05-4396 TCGA-05-4427 TCGA-38-4625 TCGA-49-6743 TCGA-50-5931 
       37.02         9.96        26.01        97.74        12.13         8.78 
TCGA-50-6594 TCGA-64-1677 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-71-6725 
       12.16        20.65        42.90        51.25        28.44         2.01 
TCGA-91-6829 
       41.33 

$`COL19A1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4397 
       50.07         3.98        19.92        14.01        45.01        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02        15.02         4.96 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
       28.96        22.03         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        5.95         8.68       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61        14.73        21.93        46.98 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        44.94        24.36        42.08        42.77         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        37.15        38.24        23.51         6.21        23.74 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       13.71        12.59        13.38        10.78         9.93        27.78 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
       11.90         5.42        12.16        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46         5.16 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       55.89        15.02        29.26        17.13        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       70.55        14.96        25.81        31.04        49.28         8.05 
TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        9.27        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
       18.64        29.00        25.12        22.55        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       25.51        11.05         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 
       56.81        39.09        37.02        87.98         2.04        28.41 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99        20.02        18.84        14.04        12.66         5.69 
TCGA-67-6216 TCGA-67-6217 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
        4.60        13.87        52.57        23.38        29.95        26.27 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 
       15.35         4.27         1.32         5.39         1.25        12.36 
TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       10.62        10.16         2.60        13.71 

  COL19A1 MUTATED COL19A1 WILD-TYPE 
             2.01              0.07 
  COL19A1 MUTATED COL19A1 WILD-TYPE 
            97.74            120.79 
  COL19A1 MUTATED COL19A1 WILD-TYPE 
           26.010            20.265 
[1] "2.0 - 97.7 (26.0)"  "0.1 - 120.8 (20.3)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"COL19A1 WILD-TYPE"   "COL19A1 MUTATED"   "COL19A1 MUTATED" "COL19A1 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "COL19A1 MUTATED" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE"   "COL19A1 MUTATED" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
  "COL19A1 MUTATED" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
  "COL19A1 MUTATED" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE"   "COL19A1 MUTATED" "COL19A1 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE"   "COL19A1 MUTATED" "COL19A1 WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE"   "COL19A1 MUTATED" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"COL19A1 WILD-TYPE"   "COL19A1 MUTATED"   "COL19A1 MUTATED" "COL19A1 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE"   "COL19A1 MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE"   "COL19A1 MUTATED" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"COL19A1 WILD-TYPE"   "COL19A1 MUTATED"   "COL19A1 MUTATED" "COL19A1 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "COL19A1 MUTATED" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE"   "COL19A1 MUTATED" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
  "COL19A1 MUTATED" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
  "COL19A1 MUTATED" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE"   "COL19A1 MUTATED" "COL19A1 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE"   "COL19A1 MUTATED" "COL19A1 WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE"   "COL19A1 MUTATED" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"COL19A1 WILD-TYPE"   "COL19A1 MUTATED"   "COL19A1 MUTATED" "COL19A1 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE"   "COL19A1 MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE"   "COL19A1 MUTATED" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"COL19A1 WILD-TYPE"   "COL19A1 MUTATED"   "COL19A1 MUTATED" "COL19A1 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "COL19A1 MUTATED" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE"   "COL19A1 MUTATED" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
  "COL19A1 MUTATED" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
  "COL19A1 MUTATED" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE"   "COL19A1 MUTATED" "COL19A1 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE"   "COL19A1 MUTATED" "COL19A1 WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE"   "COL19A1 MUTATED" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"COL19A1 WILD-TYPE"   "COL19A1 MUTATED"   "COL19A1 MUTATED" "COL19A1 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE"   "COL19A1 MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE"   "COL19A1 MUTATED" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
[1] "hr=" "1.2"
D49V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  COL19A1 MUTATED          0        8         0         2          3          1
  COL19A1 WILD-TYPE       37       45        11        21         30          5
                   vv
clus                STAGE IV
  COL19A1 MUTATED          0
  COL19A1 WILD-TYPE        9
D49V3, multiclass
                   vv
clus                T1 T2 T3 T4
  COL19A1 MUTATED    1 11  1  1
  COL19A1 WILD-TYPE 40 98 13  7
D49V4, multiclass
    clus
vv   COL19A1 MUTATED COL19A1 WILD-TYPE
  T1               1                40
  T2              11                98
  T3               1                13
  T4               1                 7
                   vv
clus                N0 N1 N2+N3
  COL19A1 MUTATED    8  3     3
  COL19A1 WILD-TYPE 87 34    32
D49V5, multiclass
       clus
vv      COL19A1 MUTATED COL19A1 WILD-TYPE
  N0                  8                87
  N1                  3                34
  N2+N3               3                32
                   vv
clus                 M0  M1  MX
  COL19A1 MUTATED    12   0   2
  COL19A1 WILD-TYPE 131   9  16
D49V6, multiclass
    clus
vv   COL19A1 MUTATED COL19A1 WILD-TYPE
  M0              12               131
  M1               0                 9
  MX               2                16
D49V7, binary
                   cls
clus                 0  1
  COL19A1 MUTATED   10  4
  COL19A1 WILD-TYPE 83 75
[1] "tbl2"
                   cls
clus                [,1] [,2]
  COL19A1 MUTATED     10    4
  COL19A1 WILD-TYPE   83   75
        clus
vv       COL19A1 MUTATED COL19A1 WILD-TYPE
  FEMALE              10                83
  MALE                 4                75
D49V8, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  COL19A1 MUTATED                            0
  COL19A1 WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  COL19A1 MUTATED                                   5
  COL19A1 WILD-TYPE                                34
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  COL19A1 MUTATED                                                    5
  COL19A1 WILD-TYPE                                                110
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  COL19A1 MUTATED                                            0
  COL19A1 WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  COL19A1 MUTATED                                               2
  COL19A1 WILD-TYPE                                             0
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  COL19A1 MUTATED                                1
  COL19A1 WILD-TYPE                              1
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  COL19A1 MUTATED                                    0
  COL19A1 WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  COL19A1 MUTATED                              0                             1
  COL19A1 WILD-TYPE                            2                             3
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  COL19A1 MUTATED                                               0
  COL19A1 WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  COL19A1 MUTATED                              0
  COL19A1 WILD-TYPE                            2
D49V9, multiclass
D49V10, binary
                   cls
clus                  0   1
  COL19A1 MUTATED     0  14
  COL19A1 WILD-TYPE  14 144
[1] "tbl2"
                   cls
clus                [,1] [,2]
  COL19A1 MUTATED      0   14
  COL19A1 WILD-TYPE   14  144
     clus
vv    COL19A1 MUTATED COL19A1 WILD-TYPE
  NO                0                14
  YES              14               144
D49V11, continuous
D49V12, continuous
                   vv
clus                 R0  R1  R2  RX
  COL19A1 MUTATED    11   0   0   1
  COL19A1 WILD-TYPE 104   6   4   8
D49V13, multiclass
    clus
vv   COL19A1 MUTATED COL19A1 WILD-TYPE
  R0              11               104
  R1               0                 6
  R2               0                 4
  RX               1                 8

Clustering(50) Variable = LRRC32 MUTATION ANALYSIS
D50V1, survival
                  sevent
clus2               0  1
  LRRC32 MUTATED    8  3
  LRRC32 WILD-TYPE 91 53
  LRRC32 MUTATED LRRC32 WILD-TYPE 
              11              144 
  LRRC32 MUTATED LRRC32 WILD-TYPE 
               3               53 
$`LRRC32 MUTATED`
TCGA-05-4424 TCGA-44-2659 TCGA-44-4112 TCGA-44-6774 TCGA-50-6594 TCGA-55-5899 
       30.02        44.94        23.74         5.42        12.16         2.86 
TCGA-67-3771 TCGA-67-3774 TCGA-73-4666 TCGA-91-6828 TCGA-91-6829 
       20.02        12.66        26.27        10.62        41.33 

$`LRRC32 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4425 
        2.96        14.93         8.98        29.95        12.00        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 
       15.02         4.96        28.96        22.03         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        97.74       120.79 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 
       14.73        21.93        46.98        13.15        24.36        42.08 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       42.77         3.19         8.09        37.15        38.24        23.51 
TCGA-44-3919 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        6.21        13.71        12.59        13.38        10.78         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
       27.78        11.90        12.16        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46         5.16 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       55.89        15.02        12.13        29.26        17.13        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        70.55        14.96        25.81        31.04        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12        18.64        29.00        25.12        22.55 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 
       42.31         3.88        25.51        11.05         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 
       23.05        38.73        48.62        45.17         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        87.98 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        2.04        42.90        28.41        51.25        28.44         0.99 
TCGA-67-3772 TCGA-67-3773 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
       18.84        14.04         5.69         4.60        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       52.57        23.38        29.95        15.35         4.27         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        5.39         1.25        12.36        10.16         2.60        13.71 

  LRRC32 MUTATED LRRC32 WILD-TYPE 
            2.86             0.07 
  LRRC32 MUTATED LRRC32 WILD-TYPE 
           44.94           120.79 
  LRRC32 MUTATED LRRC32 WILD-TYPE 
           20.02            21.06 
[1] "2.9 - 44.9 (20.0)"  "0.1 - 120.8 (21.1)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"LRRC32 WILD-TYPE"   "LRRC32 MUTATED" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE"   "LRRC32 MUTATED" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"LRRC32 WILD-TYPE"   "LRRC32 MUTATED" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"LRRC32 WILD-TYPE"   "LRRC32 MUTATED" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE"   "LRRC32 MUTATED" "LRRC32 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"LRRC32 WILD-TYPE"   "LRRC32 MUTATED" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
  "LRRC32 MUTATED" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE"   "LRRC32 MUTATED" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE"   "LRRC32 MUTATED" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE"   "LRRC32 MUTATED"   "LRRC32 MUTATED" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"LRRC32 WILD-TYPE"   "LRRC32 MUTATED" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE"   "LRRC32 MUTATED" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"LRRC32 WILD-TYPE"   "LRRC32 MUTATED" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"LRRC32 WILD-TYPE"   "LRRC32 MUTATED" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE"   "LRRC32 MUTATED" "LRRC32 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"LRRC32 WILD-TYPE"   "LRRC32 MUTATED" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
  "LRRC32 MUTATED" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE"   "LRRC32 MUTATED" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE"   "LRRC32 MUTATED" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE"   "LRRC32 MUTATED"   "LRRC32 MUTATED" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"LRRC32 WILD-TYPE"   "LRRC32 MUTATED" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE"   "LRRC32 MUTATED" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"LRRC32 WILD-TYPE"   "LRRC32 MUTATED" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"LRRC32 WILD-TYPE"   "LRRC32 MUTATED" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE"   "LRRC32 MUTATED" "LRRC32 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"LRRC32 WILD-TYPE"   "LRRC32 MUTATED" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
  "LRRC32 MUTATED" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE"   "LRRC32 MUTATED" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE"   "LRRC32 MUTATED" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE"   "LRRC32 MUTATED"   "LRRC32 MUTATED" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
[1] "hr=" "1.1"
D50V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  LRRC32 MUTATED          3        3         0         2          2          0
  LRRC32 WILD-TYPE       34       50        11        21         31          6
                  vv
clus               STAGE IV
  LRRC32 MUTATED          1
  LRRC32 WILD-TYPE        8
D50V3, multiclass
                  vv
clus                T1  T2  T3  T4
  LRRC32 MUTATED     6   3   2   0
  LRRC32 WILD-TYPE  35 106  12   8
D50V4, multiclass
    clus
vv   LRRC32 MUTATED LRRC32 WILD-TYPE
  T1              6               35
  T2              3              106
  T3              2               12
  T4              0                8
                  vv
clus               N0 N1 N2+N3
  LRRC32 MUTATED    7  2     2
  LRRC32 WILD-TYPE 88 35    33
D50V5, multiclass
       clus
vv      LRRC32 MUTATED LRRC32 WILD-TYPE
  N0                 7               88
  N1                 2               35
  N2+N3              2               33
                  vv
clus                M0  M1  MX
  LRRC32 MUTATED     9   1   1
  LRRC32 WILD-TYPE 134   8  17
D50V6, multiclass
    clus
vv   LRRC32 MUTATED LRRC32 WILD-TYPE
  M0              9              134
  M1              1                8
  MX              1               17
D50V7, binary
                  cls
clus                0  1
  LRRC32 MUTATED    7  4
  LRRC32 WILD-TYPE 86 75
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRC32 MUTATED      7    4
  LRRC32 WILD-TYPE   86   75
        clus
vv       LRRC32 MUTATED LRRC32 WILD-TYPE
  FEMALE              7               86
  MALE                4               75
D50V8, continuous
[1] "Remove cluster labels:" "LRRC32 MUTATED"        
clus
  LRRC32 MUTATED LRRC32 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-64-5778       TCGA-71-6725       TCGA-73-4659       TCGA-73-4662 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" "LRRC32 WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  LRRC32 MUTATED                            0                                 1
  LRRC32 WILD-TYPE                          2                                38
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  LRRC32 MUTATED                                                    9
  LRRC32 WILD-TYPE                                                106
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  LRRC32 MUTATED                                            0
  LRRC32 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  LRRC32 MUTATED                                               1
  LRRC32 WILD-TYPE                                             1
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  LRRC32 MUTATED                                0
  LRRC32 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  LRRC32 MUTATED                                    0
  LRRC32 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  LRRC32 MUTATED                              0                             0
  LRRC32 WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  LRRC32 MUTATED                                               0
  LRRC32 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  LRRC32 MUTATED                              0
  LRRC32 WILD-TYPE                            2
D50V9, multiclass
D50V10, binary
                  cls
clus                 0   1
  LRRC32 MUTATED     1  10
  LRRC32 WILD-TYPE  13 148
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRC32 MUTATED      1   10
  LRRC32 WILD-TYPE   13  148
     clus
vv    LRRC32 MUTATED LRRC32 WILD-TYPE
  NO               1               13
  YES             10              148
D50V11, continuous
D50V12, continuous
                  vv
clus                R0  R1  R2  RX
  LRRC32 MUTATED     7   1   0   1
  LRRC32 WILD-TYPE 108   5   4   8
D50V13, multiclass
    clus
vv   LRRC32 MUTATED LRRC32 WILD-TYPE
  R0              7              108
  R1              1                5
  R2              0                4
  RX              1                8

Clustering(51) Variable = TEX15 MUTATION ANALYSIS
D51V1, survival
                 sevent
clus2              0  1
  TEX15 MUTATED   10 11
  TEX15 WILD-TYPE 89 45
  TEX15 MUTATED TEX15 WILD-TYPE 
             21             134 
  TEX15 MUTATED TEX15 WILD-TYPE 
             11              45 
$`TEX15 MUTATED`
TCGA-05-4249 TCGA-05-4396 TCGA-05-4397 TCGA-05-4405 TCGA-05-4427 TCGA-38-4625 
       50.07         9.96        24.03        20.05        26.01        97.74 
TCGA-38-4632 TCGA-49-4487 TCGA-49-4488 TCGA-49-4494 TCGA-49-6742 TCGA-50-5049 
       44.61        28.11        28.57        35.54        15.02        70.55 
TCGA-50-5066 TCGA-50-5933 TCGA-50-6590 TCGA-50-6592 TCGA-50-6593 TCGA-55-1592 
       31.04        77.88        42.31        25.51        11.05        23.05 
TCGA-55-6712 TCGA-64-5815 TCGA-73-4676 
        0.79        28.44         5.39 

$`TEX15 WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4398 
        3.98        19.92        14.01        45.01        37.02        47.05 
TCGA-05-4402 TCGA-05-4403 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        19.00         2.96        14.93         8.98        29.95 
TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 
       12.00        30.02        21.99        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 
       24.00        15.02        15.02         4.96        28.96        22.03 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
      120.79        37.71        49.02        28.37        35.28        11.64 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       14.73        21.93        46.98        13.15        44.94        24.36 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       42.08        42.77         3.19         8.09        37.15        38.24 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
       23.51         6.21        23.74        13.71        12.59        13.38 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
       10.78         9.93        27.78        11.90         5.42        12.16 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4490 
       63.72        32.45        36.49        16.41        76.21        12.66 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46         5.16 
TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       55.89        12.13        29.26        17.13        20.48        71.47 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       14.96        25.81        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       35.87        21.47         8.45        15.12        18.64        29.00 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
       25.12        22.55         3.88        12.16         6.21        33.37 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        87.98         2.04 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       42.90        28.41        51.25         0.99        20.02        18.84 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
       14.04        12.66         5.69         4.60        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        26.27        15.35         4.27 
TCGA-73-4675 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         1.25        12.36        10.62        41.33        10.16 
TCGA-91-6835 TCGA-91-6836 
        2.60        13.71 

  TEX15 MUTATED TEX15 WILD-TYPE 
           0.79            0.07 
  TEX15 MUTATED TEX15 WILD-TYPE 
          97.74          120.79 
  TEX15 MUTATED TEX15 WILD-TYPE 
          28.11           18.92 
[1] "0.8 - 97.7 (28.1)"  "0.1 - 120.8 (18.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "TEX15 MUTATED" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED"   "TEX15 MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "TEX15 MUTATED" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED" "TEX15 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
  "TEX15 MUTATED"   "TEX15 MUTATED" "TEX15 WILD-TYPE"   "TEX15 MUTATED" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"TEX15 WILD-TYPE"   "TEX15 MUTATED" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
  "TEX15 MUTATED" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED" "TEX15 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED" "TEX15 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
  "TEX15 MUTATED"   "TEX15 MUTATED" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"TEX15 WILD-TYPE"   "TEX15 MUTATED" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
  "TEX15 MUTATED" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED" "TEX15 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "TEX15 MUTATED" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED"   "TEX15 MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "TEX15 MUTATED" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED" "TEX15 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
  "TEX15 MUTATED"   "TEX15 MUTATED" "TEX15 WILD-TYPE"   "TEX15 MUTATED" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"TEX15 WILD-TYPE"   "TEX15 MUTATED" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
  "TEX15 MUTATED" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED" "TEX15 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED" "TEX15 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
  "TEX15 MUTATED"   "TEX15 MUTATED" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"TEX15 WILD-TYPE"   "TEX15 MUTATED" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
  "TEX15 MUTATED" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED" "TEX15 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "TEX15 MUTATED" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED"   "TEX15 MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "TEX15 MUTATED" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED" "TEX15 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
  "TEX15 MUTATED"   "TEX15 MUTATED" "TEX15 WILD-TYPE"   "TEX15 MUTATED" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"TEX15 WILD-TYPE"   "TEX15 MUTATED" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
  "TEX15 MUTATED" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED" "TEX15 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED" "TEX15 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
  "TEX15 MUTATED"   "TEX15 MUTATED" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"TEX15 WILD-TYPE"   "TEX15 MUTATED" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
  "TEX15 MUTATED" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED" "TEX15 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE"   "TEX15 MUTATED" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
[1] "hr=" "1"  
D51V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  TEX15 MUTATED          4        7         2         4          3          3
  TEX15 WILD-TYPE       33       46         9        19         30          3
                 vv
clus              STAGE IV
  TEX15 MUTATED          1
  TEX15 WILD-TYPE        8
D51V3, multiclass
                 vv
clus              T1 T2 T3 T4
  TEX15 MUTATED    3 16  2  3
  TEX15 WILD-TYPE 38 93 12  5
D51V4, multiclass
    clus
vv   TEX15 MUTATED TEX15 WILD-TYPE
  T1             3              38
  T2            16              93
  T3             2              12
  T4             3               5
                 vv
clus              N0 N1 N2+N3
  TEX15 MUTATED   11  8     5
  TEX15 WILD-TYPE 84 29    30
D51V5, multiclass
       clus
vv      TEX15 MUTATED TEX15 WILD-TYPE
  N0               11              84
  N1                8              29
  N2+N3             5              30
                 vv
clus               M0  M1  MX
  TEX15 MUTATED    21   1   2
  TEX15 WILD-TYPE 122   8  16
D51V6, multiclass
    clus
vv   TEX15 MUTATED TEX15 WILD-TYPE
  M0            21             122
  M1             1               8
  MX             2              16
D51V7, binary
                 cls
clus               0  1
  TEX15 MUTATED   10 14
  TEX15 WILD-TYPE 83 65
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TEX15 MUTATED     10   14
  TEX15 WILD-TYPE   83   65
        clus
vv       TEX15 MUTATED TEX15 WILD-TYPE
  FEMALE            10              83
  MALE              14              65
D51V8, continuous
[1] "Remove cluster labels:" "TEX15 MUTATED"         
clus
  TEX15 MUTATED TEX15 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4668      TCGA-75-5122 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  TEX15 MUTATED                            0                                 8
  TEX15 WILD-TYPE                          2                                31
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  TEX15 MUTATED                                                   14
  TEX15 WILD-TYPE                                                101
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  TEX15 MUTATED                                            0
  TEX15 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  TEX15 MUTATED                                               0
  TEX15 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  TEX15 MUTATED                                0
  TEX15 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  TEX15 MUTATED                                    0
  TEX15 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  TEX15 MUTATED                              0                             1
  TEX15 WILD-TYPE                            2                             3
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  TEX15 MUTATED                                               0
  TEX15 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  TEX15 MUTATED                              1
  TEX15 WILD-TYPE                            1
D51V9, multiclass
D51V10, binary
                 cls
clus                0   1
  TEX15 MUTATED     3  21
  TEX15 WILD-TYPE  11 137
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TEX15 MUTATED      3   21
  TEX15 WILD-TYPE   11  137
     clus
vv    TEX15 MUTATED TEX15 WILD-TYPE
  NO              3              11
  YES            21             137
D51V11, continuous
D51V12, continuous
                 vv
clus              R0 R1 R2 RX
  TEX15 MUTATED   18  0  1  0
  TEX15 WILD-TYPE 97  6  3  9
D51V13, multiclass
    clus
vv   TEX15 MUTATED TEX15 WILD-TYPE
  R0            18              97
  R1             0               6
  R2             1               3
  RX             0               9

Clustering(52) Variable = OR10G9 MUTATION ANALYSIS
D52V1, survival
                  sevent
clus2               0  1
  OR10G9 MUTATED    6  4
  OR10G9 WILD-TYPE 93 52
  OR10G9 MUTATED OR10G9 WILD-TYPE 
              10              145 
  OR10G9 MUTATED OR10G9 WILD-TYPE 
               4               52 
$`OR10G9 MUTATED`
TCGA-05-4398 TCGA-05-4424 TCGA-05-4427 TCGA-35-3615 TCGA-38-4632 TCGA-50-6590 
       47.05        30.02        26.01         0.46        44.61        42.31 
TCGA-50-6593 TCGA-55-1596 TCGA-55-6712 TCGA-64-5775 
       11.05        45.17         0.79         2.04 

$`OR10G9 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
        9.96        24.03         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 
       14.93         8.98        29.95        12.00        21.99        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02        15.02         4.96 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-4122 TCGA-35-4123 
       28.96        22.03         0.99         2.04         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        97.74       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       35.28        11.64        14.73        21.93        46.98        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       44.94        24.36        42.08        42.77         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       37.15        38.24        23.51         6.21        23.74        13.71 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
       12.59        13.38        10.78         9.93        27.78        11.90 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42        12.16        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46         5.16        55.89 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        29.26        17.13        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       70.55        14.96        25.81        31.04        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 
       15.12        18.64        29.00        25.12        22.55         3.88 
TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       25.51        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-64-1676 TCGA-64-1677 
       48.62         2.86         0.07        32.61        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       39.09        37.02        87.98        42.90        28.41        51.25 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       28.44         0.99        20.02        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        5.69         4.60        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        26.27        15.35         4.27         1.32         5.39 
TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.25        12.36        10.62        41.33        10.16         2.60 
TCGA-91-6836 
       13.71 

  OR10G9 MUTATED OR10G9 WILD-TYPE 
            0.46             0.07 
  OR10G9 MUTATED OR10G9 WILD-TYPE 
           47.05           120.79 
  OR10G9 MUTATED OR10G9 WILD-TYPE 
          28.015           20.480 
[1] "0.5 - 47.0 (28.0)"  "0.1 - 120.8 (20.5)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
  "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE"   "OR10G9 MUTATED" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
  "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
  "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
  "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE"   "OR10G9 MUTATED" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
  "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
  "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
  "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE"   "OR10G9 MUTATED" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
  "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
  "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
[1] "hr=" "1.1"
D52V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  OR10G9 MUTATED          0        2         1         3          2          1
  OR10G9 WILD-TYPE       37       51        10        20         31          5
                  vv
clus               STAGE IV
  OR10G9 MUTATED          1
  OR10G9 WILD-TYPE        8
D52V3, multiclass
                  vv
clus                T1  T2  T3  T4
  OR10G9 MUTATED     1   6   1   2
  OR10G9 WILD-TYPE  40 103  13   6
D52V4, multiclass
    clus
vv   OR10G9 MUTATED OR10G9 WILD-TYPE
  T1              1               40
  T2              6              103
  T3              1               13
  T4              2                6
                  vv
clus               N0 N1 N2+N3
  OR10G9 MUTATED    4  4     2
  OR10G9 WILD-TYPE 91 33    33
D52V5, multiclass
       clus
vv      OR10G9 MUTATED OR10G9 WILD-TYPE
  N0                 4               91
  N1                 4               33
  N2+N3              2               33
                  vv
clus                M0  M1  MX
  OR10G9 MUTATED     8   1   1
  OR10G9 WILD-TYPE 135   8  17
D52V6, multiclass
    clus
vv   OR10G9 MUTATED OR10G9 WILD-TYPE
  M0              8              135
  M1              1                8
  MX              1               17
D52V7, binary
                  cls
clus                0  1
  OR10G9 MUTATED    4  6
  OR10G9 WILD-TYPE 89 73
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10G9 MUTATED      4    6
  OR10G9 WILD-TYPE   89   73
        clus
vv       OR10G9 MUTATED OR10G9 WILD-TYPE
  FEMALE              4               89
  MALE                6               73
D52V8, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR10G9 MUTATED                            0                                 4
  OR10G9 WILD-TYPE                          2                                35
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR10G9 MUTATED                                                    6
  OR10G9 WILD-TYPE                                                109
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR10G9 MUTATED                                            0
  OR10G9 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR10G9 MUTATED                                               0
  OR10G9 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  OR10G9 MUTATED                                0
  OR10G9 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  OR10G9 MUTATED                                    0
  OR10G9 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR10G9 MUTATED                              0                             0
  OR10G9 WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR10G9 MUTATED                                               0
  OR10G9 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  OR10G9 MUTATED                              0
  OR10G9 WILD-TYPE                            2
D52V9, multiclass
D52V10, binary
                  cls
clus                 0   1
  OR10G9 MUTATED     0  10
  OR10G9 WILD-TYPE  14 148
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10G9 MUTATED      0   10
  OR10G9 WILD-TYPE   14  148
     clus
vv    OR10G9 MUTATED OR10G9 WILD-TYPE
  NO               0               14
  YES             10              148
D52V11, continuous
D52V12, continuous
                  vv
clus                R0  R1  R2  RX
  OR10G9 MUTATED     7   1   0   0
  OR10G9 WILD-TYPE 108   5   4   9
D52V13, multiclass
    clus
vv   OR10G9 MUTATED OR10G9 WILD-TYPE
  R0              7              108
  R1              1                5
  R2              0                4
  RX              0                9

Clustering(53) Variable = CNGA2 MUTATION ANALYSIS
D53V1, survival
                 sevent
clus2              0  1
  CNGA2 MUTATED    7  3
  CNGA2 WILD-TYPE 92 53
  CNGA2 MUTATED CNGA2 WILD-TYPE 
             10             145 
  CNGA2 MUTATED CNGA2 WILD-TYPE 
              3              53 
$`CNGA2 MUTATED`
TCGA-05-4396 TCGA-05-4420 TCGA-05-4427 TCGA-05-4430 TCGA-05-5428 TCGA-49-6742 
        9.96        29.95        26.01        25.02        22.03        15.02 
TCGA-50-5045 TCGA-55-1592 TCGA-64-1676 TCGA-67-3771 
       71.47        23.05        56.81        20.02 

$`CNGA2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
       14.93         8.98        12.00        30.02        21.99        26.01 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02        15.02         4.96        28.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       97.74       120.79        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61        14.73        21.93        46.98        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       44.94        24.36        42.08        42.77         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       37.15        38.24        23.51         6.21        23.74        13.71 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
       12.59        13.38        10.78         9.93        27.78        11.90 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42        12.16        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46         5.16        55.89 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5049 TCGA-50-5051 
       12.13        29.26        17.13        20.48        70.55        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81        31.04        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12        18.64 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
       29.00        25.12        22.55        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 
       11.05        12.16         6.21        33.37        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 
       45.17         2.86         0.07        32.61         0.79        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        87.98         2.04        42.90        28.41 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       51.25        28.44         0.99        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        5.69         4.60        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        26.27        15.35         4.27         1.32         5.39 
TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.25        12.36        10.62        41.33        10.16         2.60 
TCGA-91-6836 
       13.71 

  CNGA2 MUTATED CNGA2 WILD-TYPE 
           9.96            0.07 
  CNGA2 MUTATED CNGA2 WILD-TYPE 
          71.47          120.79 
  CNGA2 MUTATED CNGA2 WILD-TYPE 
         24.035          20.050 
[1] "10.0 - 71.5 (24.0)" "0.1 - 120.8 (20.1)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE"   "CNGA2 MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "CNGA2 MUTATED"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
  "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE"   "CNGA2 MUTATED" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
  "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"CNGA2 WILD-TYPE"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"CNGA2 WILD-TYPE"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE"   "CNGA2 MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "CNGA2 MUTATED"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
  "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE"   "CNGA2 MUTATED" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
  "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"CNGA2 WILD-TYPE"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"CNGA2 WILD-TYPE"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE"   "CNGA2 MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "CNGA2 MUTATED"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
  "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE"   "CNGA2 MUTATED" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
  "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"CNGA2 WILD-TYPE"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"CNGA2 WILD-TYPE"   "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "CNGA2 MUTATED" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" "CNGA2 WILD-TYPE" 
[1] "hr=" "1.5"
D53V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  CNGA2 MUTATED          4        3         1         2          0          1
  CNGA2 WILD-TYPE       33       50        10        21         33          5
                 vv
clus              STAGE IV
  CNGA2 MUTATED          0
  CNGA2 WILD-TYPE        9
D53V3, multiclass
                 vv
clus               T1  T2  T3  T4
  CNGA2 MUTATED     3   7   0   1
  CNGA2 WILD-TYPE  38 102  14   7
D53V4, multiclass
    clus
vv   CNGA2 MUTATED CNGA2 WILD-TYPE
  T1             3              38
  T2             7             102
  T3             0              14
  T4             1               7
                 vv
clus              N0 N1 N2+N3
  CNGA2 MUTATED    6  5     0
  CNGA2 WILD-TYPE 89 32    35
D53V5, multiclass
       clus
vv      CNGA2 MUTATED CNGA2 WILD-TYPE
  N0                6              89
  N1                5              32
  N2+N3             0              35
                 vv
clus               M0  M1  MX
  CNGA2 MUTATED    11   0   0
  CNGA2 WILD-TYPE 132   9  18
D53V6, multiclass
    clus
vv   CNGA2 MUTATED CNGA2 WILD-TYPE
  M0            11             132
  M1             0               9
  MX             0              18
D53V7, binary
                 cls
clus               0  1
  CNGA2 MUTATED    4  7
  CNGA2 WILD-TYPE 89 72
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNGA2 MUTATED      4    7
  CNGA2 WILD-TYPE   89   72
        clus
vv       CNGA2 MUTATED CNGA2 WILD-TYPE
  FEMALE             4              89
  MALE               7              72
D53V8, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  CNGA2 MUTATED                            0                                 6
  CNGA2 WILD-TYPE                          2                                33
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CNGA2 MUTATED                                                    4
  CNGA2 WILD-TYPE                                                111
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  CNGA2 MUTATED                                            0
  CNGA2 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  CNGA2 MUTATED                                               0
  CNGA2 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  CNGA2 MUTATED                                0
  CNGA2 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  CNGA2 MUTATED                                    0
  CNGA2 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  CNGA2 MUTATED                              0                             0
  CNGA2 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  CNGA2 MUTATED                                               0
  CNGA2 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  CNGA2 MUTATED                              1
  CNGA2 WILD-TYPE                            1
D53V9, multiclass
D53V10, binary
                 cls
clus                0   1
  CNGA2 MUTATED     1  10
  CNGA2 WILD-TYPE  13 148
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNGA2 MUTATED      1   10
  CNGA2 WILD-TYPE   13  148
     clus
vv    CNGA2 MUTATED CNGA2 WILD-TYPE
  NO              1              13
  YES            10             148
D53V11, continuous
D53V12, continuous
                 vv
clus               R0  R1  R2  RX
  CNGA2 MUTATED     9   0   0   1
  CNGA2 WILD-TYPE 106   6   4   8
D53V13, multiclass
    clus
vv   CNGA2 MUTATED CNGA2 WILD-TYPE
  R0             9             106
  R1             0               6
  R2             0               4
  RX             1               8

Clustering(54) Variable = FGB MUTATION ANALYSIS
D54V1, survival
               sevent
clus2            0  1
  FGB MUTATED    7  3
  FGB WILD-TYPE 92 53
  FGB MUTATED FGB WILD-TYPE 
           10           145 
  FGB MUTATED FGB WILD-TYPE 
            3            53 
$`FGB MUTATED`
TCGA-05-4396 TCGA-05-4424 TCGA-38-4626 TCGA-44-2656 TCGA-44-6778 TCGA-49-4506 
        9.96        30.02       120.79        46.98        36.49        32.84 
TCGA-50-5044 TCGA-50-5941 TCGA-50-5942 TCGA-64-1676 
       20.48        18.64        29.00        56.81 

$`FGB WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 
       14.93         8.98        29.95        12.00        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        4.96        28.96        22.03         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 
        7.36         5.95         8.68        97.74        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61        14.73        21.93 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        44.94        24.36        42.08        42.77         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        37.15        38.24        23.51         6.21        23.74 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       13.71        12.59        13.38        10.78         9.93        27.78 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 
       11.90         5.42        12.16        63.72        32.45        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       14.07         8.81        29.46         5.16        55.89        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.13        29.26        17.13        71.47        70.55        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81        31.04        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5944 
       35.87        77.88        21.47         8.45        15.12        25.12 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       22.55        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 
        2.86         0.07        32.61         0.79        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        87.98         2.04        42.90        28.41        51.25 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       28.44         0.99        20.02        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        5.69         4.60        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        26.27        15.35         4.27         1.32         5.39 
TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.25        12.36        10.62        41.33        10.16         2.60 
TCGA-91-6836 
       13.71 

  FGB MUTATED FGB WILD-TYPE 
         9.96          0.07 
  FGB MUTATED FGB WILD-TYPE 
       120.79         97.74 
  FGB MUTATED FGB WILD-TYPE 
        31.43         20.02 
[1] "10.0 - 120.8 (31.4)" "0.1 - 97.7 (20.0)"  
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428    TCGA-05-5429 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
  "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED"   "FGB MUTATED" "FGB WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-86-6562 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-91-6828    TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428    TCGA-05-5429 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
  "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED"   "FGB MUTATED" "FGB WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-86-6562 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-91-6828    TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428    TCGA-05-5429 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
  "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"FGB WILD-TYPE" "FGB WILD-TYPE"   "FGB MUTATED"   "FGB MUTATED" "FGB WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"FGB WILD-TYPE"   "FGB MUTATED" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-86-6562 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-91-6828    TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
[1] "hr=" "2.1"
D54V2, continuous
               vv
clus            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  FGB MUTATED          3        1         1         2          2          2
  FGB WILD-TYPE       34       52        10        21         31          4
               vv
clus            STAGE IV
  FGB MUTATED          0
  FGB WILD-TYPE        9
D54V3, multiclass
               vv
clus             T1  T2  T3  T4
  FGB MUTATED     3   4   2   2
  FGB WILD-TYPE  38 105  12   6
D54V4, multiclass
    clus
vv   FGB MUTATED FGB WILD-TYPE
  T1           3            38
  T2           4           105
  T3           2            12
  T4           2             6
               vv
clus            N0 N1 N2+N3
  FGB MUTATED    6  3     2
  FGB WILD-TYPE 89 34    33
D54V5, multiclass
       clus
vv      FGB MUTATED FGB WILD-TYPE
  N0              6            89
  N1              3            34
  N2+N3           2            33
               vv
clus             M0  M1  MX
  FGB MUTATED    10   0   1
  FGB WILD-TYPE 133   9  17
D54V6, multiclass
    clus
vv   FGB MUTATED FGB WILD-TYPE
  M0          10           133
  M1           0             9
  MX           1            17
D54V7, binary
               cls
clus             0  1
  FGB MUTATED    6  5
  FGB WILD-TYPE 87 74
[1] "tbl2"
               cls
clus            [,1] [,2]
  FGB MUTATED      6    5
  FGB WILD-TYPE   87   74
        clus
vv       FGB MUTATED FGB WILD-TYPE
  FEMALE           6            87
  MALE             5            74
D54V8, continuous
               vv
clus            LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  FGB MUTATED                            0                                 2
  FGB WILD-TYPE                          2                                37
               vv
clus            LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  FGB MUTATED                                                    8
  FGB WILD-TYPE                                                107
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  FGB MUTATED                                            0
  FGB WILD-TYPE                                          1
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  FGB MUTATED                                               0
  FGB WILD-TYPE                                             2
               vv
clus            LUNG CLEAR CELL ADENOCARCINOMA
  FGB MUTATED                                0
  FGB WILD-TYPE                              2
               vv
clus            LUNG MICROPAPILLARY ADENOCARCINOMA LUNG MUCINOUS ADENOCARCINOMA
  FGB MUTATED                                    0                            0
  FGB WILD-TYPE                                  2                            2
               vv
clus            LUNG PAPILLARY ADENOCARCINOMA
  FGB MUTATED                               1
  FGB WILD-TYPE                             3
               vv
clus            LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  FGB MUTATED                                               0
  FGB WILD-TYPE                                             1
               vv
clus            MUCINOUS (COLLOID) CARCINOMA
  FGB MUTATED                              0
  FGB WILD-TYPE                            2
D54V9, multiclass
D54V10, binary
               cls
clus              0   1
  FGB MUTATED     1  10
  FGB WILD-TYPE  13 148
[1] "tbl2"
               cls
clus            [,1] [,2]
  FGB MUTATED      1   10
  FGB WILD-TYPE   13  148
     clus
vv    FGB MUTATED FGB WILD-TYPE
  NO            1            13
  YES          10           148
D54V11, continuous
D54V12, continuous
               vv
clus             R0  R1  R2  RX
  FGB MUTATED     4   2   1   0
  FGB WILD-TYPE 111   4   3   9
D54V13, multiclass
    clus
vv   FGB MUTATED FGB WILD-TYPE
  R0           4           111
  R1           2             4
  R2           1             3
  RX           0             9

Clustering(55) Variable = ANP32C MUTATION ANALYSIS
D55V1, survival
                  sevent
clus2               0  1
  ANP32C MUTATED    3  5
  ANP32C WILD-TYPE 96 51
  ANP32C MUTATED ANP32C WILD-TYPE 
               8              147 
  ANP32C MUTATED ANP32C WILD-TYPE 
               5               51 
$`ANP32C MUTATED`
TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 TCGA-44-2656 TCGA-44-6779 TCGA-50-5933 
       37.02         9.96        24.03        46.98        16.41        77.88 
TCGA-64-5778 TCGA-73-4659 
       42.90        23.38 

$`ANP32C WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4398 
       50.07         3.98        19.92        14.01        45.01        47.05 
TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
        8.02        19.00        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
       29.95        12.00        30.02        21.99        26.01        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02        15.02         4.96 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
       28.96        22.03         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        97.74       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61        14.73        21.93 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        44.94        24.36        42.08        42.77         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        37.15        38.24        23.51         6.21        23.74 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       13.71        12.59        13.38        10.78         9.93        27.78 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
       11.90         5.42        12.16        63.72        32.45        36.49 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46         5.16        55.89 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        29.26        17.13        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       70.55        14.96        25.81        31.04        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        9.27         8.78        35.87        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
       18.64        29.00        25.12        22.55        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        87.98 
TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
        2.04        28.41        51.25        28.44         0.99        20.02 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
       18.84        14.04        12.66         5.69         4.60        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
        2.01        52.57        29.95        26.27        15.35         4.27 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 
        1.32         5.39         1.25        12.36        10.62        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       10.16         2.60        13.71 

  ANP32C MUTATED ANP32C WILD-TYPE 
            9.96             0.07 
  ANP32C MUTATED ANP32C WILD-TYPE 
           77.88           120.79 
  ANP32C MUTATED ANP32C WILD-TYPE 
          30.525           20.050 
[1] "10.0 - 77.9 (30.5)" "0.1 - 120.8 (20.1)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"ANP32C WILD-TYPE"   "ANP32C MUTATED"   "ANP32C MUTATED"   "ANP32C MUTATED" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"ANP32C WILD-TYPE"   "ANP32C MUTATED" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE"   "ANP32C MUTATED" "ANP32C WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE"   "ANP32C MUTATED" "ANP32C WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE"   "ANP32C MUTATED" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"ANP32C WILD-TYPE"   "ANP32C MUTATED" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"ANP32C WILD-TYPE"   "ANP32C MUTATED"   "ANP32C MUTATED"   "ANP32C MUTATED" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"ANP32C WILD-TYPE"   "ANP32C MUTATED" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE"   "ANP32C MUTATED" "ANP32C WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE"   "ANP32C MUTATED" "ANP32C WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE"   "ANP32C MUTATED" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"ANP32C WILD-TYPE"   "ANP32C MUTATED" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"ANP32C WILD-TYPE"   "ANP32C MUTATED"   "ANP32C MUTATED"   "ANP32C MUTATED" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"ANP32C WILD-TYPE"   "ANP32C MUTATED" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE"   "ANP32C MUTATED" "ANP32C WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE"   "ANP32C MUTATED" "ANP32C WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE"   "ANP32C MUTATED" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"ANP32C WILD-TYPE"   "ANP32C MUTATED" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
[1] "hr=" "1.1"
D55V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  ANP32C MUTATED          0        3         0         2          1          2
  ANP32C WILD-TYPE       37       50        11        21         32          4
                  vv
clus               STAGE IV
  ANP32C MUTATED          0
  ANP32C WILD-TYPE        9
D55V3, multiclass
                  vv
clus                T1  T2  T3  T4
  ANP32C MUTATED     0   6   0   2
  ANP32C WILD-TYPE  41 103  14   6
D55V4, multiclass
    clus
vv   ANP32C MUTATED ANP32C WILD-TYPE
  T1              0               41
  T2              6              103
  T3              0               14
  T4              2                6
                  vv
clus               N0 N1 N2+N3
  ANP32C MUTATED    3  3     2
  ANP32C WILD-TYPE 92 34    33
D55V5, multiclass
       clus
vv      ANP32C MUTATED ANP32C WILD-TYPE
  N0                 3               92
  N1                 3               34
  N2+N3              2               33
                  vv
clus                M0  M1  MX
  ANP32C MUTATED     7   0   1
  ANP32C WILD-TYPE 136   9  17
D55V6, multiclass
    clus
vv   ANP32C MUTATED ANP32C WILD-TYPE
  M0              7              136
  M1              0                9
  MX              1               17
D55V7, binary
                  cls
clus                0  1
  ANP32C MUTATED    2  6
  ANP32C WILD-TYPE 91 73
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ANP32C MUTATED      2    6
  ANP32C WILD-TYPE   91   73
        clus
vv       ANP32C MUTATED ANP32C WILD-TYPE
  FEMALE              2               91
  MALE                6               73
D55V8, continuous
[1] "Remove cluster labels:" "ANP32C MUTATED"        
clus
  ANP32C MUTATED ANP32C WILD-TYPE 
               2               10 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4662       TCGA-73-4666       TCGA-73-4668 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-73-4676       TCGA-75-5122 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  ANP32C MUTATED                            0                                 3
  ANP32C WILD-TYPE                          2                                36
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ANP32C MUTATED                                                    4
  ANP32C WILD-TYPE                                                111
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  ANP32C MUTATED                                            0
  ANP32C WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  ANP32C MUTATED                                               1
  ANP32C WILD-TYPE                                             1
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  ANP32C MUTATED                                0
  ANP32C WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  ANP32C MUTATED                                    0
  ANP32C WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  ANP32C MUTATED                              0                             0
  ANP32C WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  ANP32C MUTATED                                               0
  ANP32C WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  ANP32C MUTATED                              0
  ANP32C WILD-TYPE                            2
D55V9, multiclass
D55V10, binary
                  cls
clus                 0   1
  ANP32C MUTATED     1   7
  ANP32C WILD-TYPE  13 151
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ANP32C MUTATED      1    7
  ANP32C WILD-TYPE   13  151
     clus
vv    ANP32C MUTATED ANP32C WILD-TYPE
  NO               1               13
  YES              7              151
D55V11, continuous
D55V12, continuous
                  vv
clus                R0  R1  R2  RX
  ANP32C MUTATED     5   0   0   0
  ANP32C WILD-TYPE 110   6   4   9
D55V13, multiclass
    clus
vv   ANP32C MUTATED ANP32C WILD-TYPE
  R0              5              110
  R1              0                6
  R2              0                4
  RX              0                9

Clustering(56) Variable = KIAA1755 MUTATION ANALYSIS
D56V1, survival
                    sevent
clus2                 0  1
  KIAA1755 MUTATED    8  3
  KIAA1755 WILD-TYPE 91 53
  KIAA1755 MUTATED KIAA1755 WILD-TYPE 
                11                144 
  KIAA1755 MUTATED KIAA1755 WILD-TYPE 
                 3                 53 
$`KIAA1755 MUTATED`
TCGA-05-4249 TCGA-05-4396 TCGA-05-4427 TCGA-44-2657 TCGA-44-3398 TCGA-44-3918 
       50.07         9.96        26.01        13.15        38.24        23.51 
TCGA-49-4514 TCGA-50-5072 TCGA-50-6593 TCGA-67-3771 TCGA-91-6836 
       55.89         8.05        11.05        20.02        13.71 

$`KIAA1755 WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4397 
        3.98        19.92        14.01        45.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02        15.02         4.96 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
       28.96        22.03         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        97.74       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61        14.73        21.93 
TCGA-44-2656 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       46.98        44.94        24.36        42.08        42.77         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.09        37.15         6.21        23.74        13.71        12.59 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
       13.38        10.78         9.93        27.78        11.90         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
       12.16        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 
       32.84         8.81        29.46         5.16        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       29.26        17.13        20.48        71.47        70.55        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       25.81        31.04        49.28         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12        18.64        29.00 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6594 
       25.12        22.55        42.31         3.88        25.51        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        87.98         2.04        42.90        28.41 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       51.25        28.44         0.99        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        5.69         4.60        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        26.27        15.35         4.27         1.32         5.39 
TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.25        12.36        10.62        41.33        10.16         2.60 

  KIAA1755 MUTATED KIAA1755 WILD-TYPE 
              8.05               0.07 
  KIAA1755 MUTATED KIAA1755 WILD-TYPE 
             55.89             120.79 
  KIAA1755 MUTATED KIAA1755 WILD-TYPE 
             20.02              21.06 
[1] "8.1 - 55.9 (20.0)"  "0.1 - 120.8 (21.1)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "KIAA1755 MUTATED" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
  "KIAA1755 MUTATED" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE"   "KIAA1755 MUTATED" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-44-2655 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"KIAA1755 WILD-TYPE"   "KIAA1755 MUTATED" "KIAA1755 WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
  "KIAA1755 MUTATED"   "KIAA1755 MUTATED" "KIAA1755 WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5645 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-49-4486 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"KIAA1755 WILD-TYPE"   "KIAA1755 MUTATED" "KIAA1755 WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-50-5044         TCGA-50-5045         TCGA-50-5049 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-50-5051         TCGA-50-5055         TCGA-50-5066 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-50-5068         TCGA-50-5072         TCGA-50-5930 
"KIAA1755 WILD-TYPE"   "KIAA1755 MUTATED" "KIAA1755 WILD-TYPE" 
        TCGA-50-5931         TCGA-50-5932         TCGA-50-5933 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-50-5935         TCGA-50-5936         TCGA-50-5939 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-50-5941         TCGA-50-5942         TCGA-50-5944 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-50-5946         TCGA-50-6590         TCGA-50-6591 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-50-6592         TCGA-50-6593         TCGA-50-6594 
"KIAA1755 WILD-TYPE"   "KIAA1755 MUTATED" "KIAA1755 WILD-TYPE" 
        TCGA-50-6595         TCGA-50-6597         TCGA-55-1592 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-55-6712         TCGA-64-1676         TCGA-64-1677 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1680         TCGA-64-5774 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
  "KIAA1755 MUTATED" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-67-6217         TCGA-71-6725         TCGA-73-4658 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-73-4659         TCGA-73-4662         TCGA-73-4666 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-73-4668         TCGA-73-4670         TCGA-73-4675 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-73-4676         TCGA-73-4677         TCGA-86-6562 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"KIAA1755 WILD-TYPE"   "KIAA1755 MUTATED" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "KIAA1755 MUTATED" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
  "KIAA1755 MUTATED" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE"   "KIAA1755 MUTATED" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-44-2655 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"KIAA1755 WILD-TYPE"   "KIAA1755 MUTATED" "KIAA1755 WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
  "KIAA1755 MUTATED"   "KIAA1755 MUTATED" "KIAA1755 WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5645 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-49-4486 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"KIAA1755 WILD-TYPE"   "KIAA1755 MUTATED" "KIAA1755 WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-50-5044         TCGA-50-5045         TCGA-50-5049 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-50-5051         TCGA-50-5055         TCGA-50-5066 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-50-5068         TCGA-50-5072         TCGA-50-5930 
"KIAA1755 WILD-TYPE"   "KIAA1755 MUTATED" "KIAA1755 WILD-TYPE" 
        TCGA-50-5931         TCGA-50-5932         TCGA-50-5933 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-50-5935         TCGA-50-5936         TCGA-50-5939 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-50-5941         TCGA-50-5942         TCGA-50-5944 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-50-5946         TCGA-50-6590         TCGA-50-6591 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-50-6592         TCGA-50-6593         TCGA-50-6594 
"KIAA1755 WILD-TYPE"   "KIAA1755 MUTATED" "KIAA1755 WILD-TYPE" 
        TCGA-50-6595         TCGA-50-6597         TCGA-55-1592 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-55-6712         TCGA-64-1676         TCGA-64-1677 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1680         TCGA-64-5774 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
  "KIAA1755 MUTATED" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-67-6217         TCGA-71-6725         TCGA-73-4658 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-73-4659         TCGA-73-4662         TCGA-73-4666 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-73-4668         TCGA-73-4670         TCGA-73-4675 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-73-4676         TCGA-73-4677         TCGA-86-6562 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"KIAA1755 WILD-TYPE"   "KIAA1755 MUTATED" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "KIAA1755 MUTATED" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
  "KIAA1755 MUTATED" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE"   "KIAA1755 MUTATED" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-44-2655 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"KIAA1755 WILD-TYPE"   "KIAA1755 MUTATED" "KIAA1755 WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
  "KIAA1755 MUTATED"   "KIAA1755 MUTATED" "KIAA1755 WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5645 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-49-4486 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"KIAA1755 WILD-TYPE"   "KIAA1755 MUTATED" "KIAA1755 WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-50-5044         TCGA-50-5045         TCGA-50-5049 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-50-5051         TCGA-50-5055         TCGA-50-5066 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-50-5068         TCGA-50-5072         TCGA-50-5930 
"KIAA1755 WILD-TYPE"   "KIAA1755 MUTATED" "KIAA1755 WILD-TYPE" 
        TCGA-50-5931         TCGA-50-5932         TCGA-50-5933 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-50-5935         TCGA-50-5936         TCGA-50-5939 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-50-5941         TCGA-50-5942         TCGA-50-5944 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-50-5946         TCGA-50-6590         TCGA-50-6591 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-50-6592         TCGA-50-6593         TCGA-50-6594 
"KIAA1755 WILD-TYPE"   "KIAA1755 MUTATED" "KIAA1755 WILD-TYPE" 
        TCGA-50-6595         TCGA-50-6597         TCGA-55-1592 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-55-6712         TCGA-64-1676         TCGA-64-1677 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1680         TCGA-64-5774 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
  "KIAA1755 MUTATED" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-67-6217         TCGA-71-6725         TCGA-73-4658 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-73-4659         TCGA-73-4662         TCGA-73-4666 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-73-4668         TCGA-73-4670         TCGA-73-4675 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-73-4676         TCGA-73-4677         TCGA-86-6562 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" "KIAA1755 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"KIAA1755 WILD-TYPE"   "KIAA1755 MUTATED" 
[1] "hr=" "1.4"
D56V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  KIAA1755 MUTATED          4        3         0         1          3
  KIAA1755 WILD-TYPE       33       50        11        22         30
                    vv
clus                 STAGE IIIB STAGE IV
  KIAA1755 MUTATED            1        0
  KIAA1755 WILD-TYPE          5        9
D56V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  KIAA1755 MUTATED     5   5   1   1
  KIAA1755 WILD-TYPE  36 104  13   7
D56V4, multiclass
    clus
vv   KIAA1755 MUTATED KIAA1755 WILD-TYPE
  T1                5                 36
  T2                5                104
  T3                1                 13
  T4                1                  7
                    vv
clus                 N0 N1 N2+N3
  KIAA1755 MUTATED    6  2     3
  KIAA1755 WILD-TYPE 89 35    32
D56V5, multiclass
       clus
vv      KIAA1755 MUTATED KIAA1755 WILD-TYPE
  N0                   6                 89
  N1                   2                 35
  N2+N3                3                 32
                    vv
clus                  M0  M1  MX
  KIAA1755 MUTATED    11   0   1
  KIAA1755 WILD-TYPE 132   9  17
D56V6, multiclass
    clus
vv   KIAA1755 MUTATED KIAA1755 WILD-TYPE
  M0               11                132
  M1                0                  9
  MX                1                 17
D56V7, binary
                    cls
clus                  0  1
  KIAA1755 MUTATED    9  3
  KIAA1755 WILD-TYPE 84 76
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KIAA1755 MUTATED      9    3
  KIAA1755 WILD-TYPE   84   76
        clus
vv       KIAA1755 MUTATED KIAA1755 WILD-TYPE
  FEMALE                9                 84
  MALE                  3                 76
D56V8, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  KIAA1755 MUTATED                            0
  KIAA1755 WILD-TYPE                          2
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  KIAA1755 MUTATED                                   3
  KIAA1755 WILD-TYPE                                36
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  KIAA1755 MUTATED                                                    7
  KIAA1755 WILD-TYPE                                                108
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  KIAA1755 MUTATED                                            0
  KIAA1755 WILD-TYPE                                          1
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  KIAA1755 MUTATED                                               0
  KIAA1755 WILD-TYPE                                             2
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  KIAA1755 MUTATED                                0
  KIAA1755 WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  KIAA1755 MUTATED                                    0
  KIAA1755 WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  KIAA1755 MUTATED                              0                             2
  KIAA1755 WILD-TYPE                            2                             2
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  KIAA1755 MUTATED                                               0
  KIAA1755 WILD-TYPE                                             1
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  KIAA1755 MUTATED                              0
  KIAA1755 WILD-TYPE                            2
D56V9, multiclass
D56V10, binary
                    cls
clus                   0   1
  KIAA1755 MUTATED     1  11
  KIAA1755 WILD-TYPE  13 147
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KIAA1755 MUTATED      1   11
  KIAA1755 WILD-TYPE   13  147
     clus
vv    KIAA1755 MUTATED KIAA1755 WILD-TYPE
  NO                 1                 13
  YES               11                147
D56V11, continuous
D56V12, continuous
                    vv
clus                  R0  R1  R2  RX
  KIAA1755 MUTATED     9   0   1   0
  KIAA1755 WILD-TYPE 106   6   3   9
D56V13, multiclass
    clus
vv   KIAA1755 MUTATED KIAA1755 WILD-TYPE
  R0                9                106
  R1                0                  6
  R2                1                  3
  RX                0                  9

Clustering(57) Variable = OVCH1 MUTATION ANALYSIS
D57V1, survival
                 sevent
clus2              0  1
  OVCH1 MUTATED    7  5
  OVCH1 WILD-TYPE 92 51
  OVCH1 MUTATED OVCH1 WILD-TYPE 
             12             143 
  OVCH1 MUTATED OVCH1 WILD-TYPE 
              5              51 
$`OVCH1 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-38-4625 TCGA-44-2666 TCGA-44-2668 TCGA-44-3918 
       19.92         9.96        97.74         3.19         8.09        23.51 
TCGA-44-4112 TCGA-49-6742 TCGA-50-5066 TCGA-50-5933 TCGA-55-5899 TCGA-64-1678 
       23.74        15.02        31.04        77.88         2.86        39.09 

$`OVCH1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4397 
       50.07         3.98        14.01        45.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        4.96        28.96        22.03         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        7.36         5.95         8.68       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61        14.73        21.93 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       46.98        13.15        44.94        24.36        42.08        42.77 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
       37.15        38.24         6.21        13.71        12.59        13.38 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
       10.78         9.93        27.78        11.90         5.42        12.16 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 
        8.81        29.46         5.16        55.89        12.13        29.26 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
       17.13        20.48        71.47        70.55        14.96        25.81 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 
       49.28         8.05         9.27         8.78        35.87        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12        18.64        29.00        25.12        22.55 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 
       33.37        23.05        38.73        48.62        45.17         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1680 TCGA-64-5774 
       32.61         0.79        56.81        20.65        37.02        87.98 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        2.04        42.90        28.41        51.25        28.44         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       20.02        18.84        14.04        12.66         5.69         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        26.27 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 
       15.35         4.27         1.32         5.39         1.25        12.36 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       10.62        41.33        10.16         2.60        13.71 

  OVCH1 MUTATED OVCH1 WILD-TYPE 
           2.86            0.07 
  OVCH1 MUTATED OVCH1 WILD-TYPE 
          97.74          120.79 
  OVCH1 MUTATED OVCH1 WILD-TYPE 
         21.715          20.650 
[1] "2.9 - 97.7 (21.7)"  "0.1 - 120.8 (20.6)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE"   "OVCH1 MUTATED" "OVCH1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE"   "OVCH1 MUTATED" "OVCH1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE"   "OVCH1 MUTATED" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE"   "OVCH1 MUTATED" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
  "OVCH1 MUTATED" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE"   "OVCH1 MUTATED" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"OVCH1 WILD-TYPE"   "OVCH1 MUTATED" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE"   "OVCH1 MUTATED" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
  "OVCH1 MUTATED" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE"   "OVCH1 MUTATED" "OVCH1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"OVCH1 WILD-TYPE"   "OVCH1 MUTATED" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE"   "OVCH1 MUTATED" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE"   "OVCH1 MUTATED" "OVCH1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE"   "OVCH1 MUTATED" "OVCH1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE"   "OVCH1 MUTATED" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE"   "OVCH1 MUTATED" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
  "OVCH1 MUTATED" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE"   "OVCH1 MUTATED" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"OVCH1 WILD-TYPE"   "OVCH1 MUTATED" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE"   "OVCH1 MUTATED" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
  "OVCH1 MUTATED" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE"   "OVCH1 MUTATED" "OVCH1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"OVCH1 WILD-TYPE"   "OVCH1 MUTATED" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE"   "OVCH1 MUTATED" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE"   "OVCH1 MUTATED" "OVCH1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE"   "OVCH1 MUTATED" "OVCH1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE"   "OVCH1 MUTATED" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE"   "OVCH1 MUTATED" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
  "OVCH1 MUTATED" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE"   "OVCH1 MUTATED" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"OVCH1 WILD-TYPE"   "OVCH1 MUTATED" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE"   "OVCH1 MUTATED" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
  "OVCH1 MUTATED" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE"   "OVCH1 MUTATED" "OVCH1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"OVCH1 WILD-TYPE"   "OVCH1 MUTATED" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE"   "OVCH1 MUTATED" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" "OVCH1 WILD-TYPE" 
[1] "hr=" "1.1"
D57V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  OVCH1 MUTATED          2        7         1         1          1          2
  OVCH1 WILD-TYPE       35       46        10        22         32          4
                 vv
clus              STAGE IV
  OVCH1 MUTATED          0
  OVCH1 WILD-TYPE        9
D57V3, multiclass
                 vv
clus               T1  T2  T3  T4
  OVCH1 MUTATED     2   9   1   2
  OVCH1 WILD-TYPE  39 100  13   6
D57V4, multiclass
    clus
vv   OVCH1 MUTATED OVCH1 WILD-TYPE
  T1             2              39
  T2             9             100
  T3             1              13
  T4             2               6
                 vv
clus              N0 N1 N2+N3
  OVCH1 MUTATED    9  3     2
  OVCH1 WILD-TYPE 86 34    33
D57V5, multiclass
       clus
vv      OVCH1 MUTATED OVCH1 WILD-TYPE
  N0                9              86
  N1                3              34
  N2+N3             2              33
                 vv
clus               M0  M1  MX
  OVCH1 MUTATED    14   0   0
  OVCH1 WILD-TYPE 129   9  18
D57V6, multiclass
    clus
vv   OVCH1 MUTATED OVCH1 WILD-TYPE
  M0            14             129
  M1             0               9
  MX             0              18
D57V7, binary
                 cls
clus               0  1
  OVCH1 MUTATED    5  9
  OVCH1 WILD-TYPE 88 70
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OVCH1 MUTATED      5    9
  OVCH1 WILD-TYPE   88   70
        clus
vv       OVCH1 MUTATED OVCH1 WILD-TYPE
  FEMALE             5              88
  MALE               9              70
D57V8, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OVCH1 MUTATED                            0                                 3
  OVCH1 WILD-TYPE                          2                                36
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OVCH1 MUTATED                                                    9
  OVCH1 WILD-TYPE                                                106
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OVCH1 MUTATED                                            0
  OVCH1 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OVCH1 MUTATED                                               0
  OVCH1 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  OVCH1 MUTATED                                0
  OVCH1 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  OVCH1 MUTATED                                    0
  OVCH1 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OVCH1 MUTATED                              0                             1
  OVCH1 WILD-TYPE                            2                             3
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OVCH1 MUTATED                                               0
  OVCH1 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  OVCH1 MUTATED                              1
  OVCH1 WILD-TYPE                            1
D57V9, multiclass
D57V10, binary
                 cls
clus                0   1
  OVCH1 MUTATED     1  13
  OVCH1 WILD-TYPE  13 145
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OVCH1 MUTATED      1   13
  OVCH1 WILD-TYPE   13  145
     clus
vv    OVCH1 MUTATED OVCH1 WILD-TYPE
  NO              1              13
  YES            13             145
D57V11, continuous
D57V12, continuous
                 vv
clus               R0  R1  R2  RX
  OVCH1 MUTATED    12   0   1   0
  OVCH1 WILD-TYPE 103   6   3   9
D57V13, multiclass
    clus
vv   OVCH1 MUTATED OVCH1 WILD-TYPE
  R0            12             103
  R1             0               6
  R2             1               3
  RX             0               9

Clustering(58) Variable = PJA1 MUTATION ANALYSIS
D58V1, survival
                sevent
clus2             0  1
  PJA1 MUTATED    6  1
  PJA1 WILD-TYPE 93 55
  PJA1 MUTATED PJA1 WILD-TYPE 
             7            148 
  PJA1 MUTATED PJA1 WILD-TYPE 
             1             55 
$`PJA1 MUTATED`
TCGA-05-4389 TCGA-05-4390 TCGA-44-3398 TCGA-49-4514 TCGA-50-6592 TCGA-64-1676 
       45.01        37.02        38.24        55.89        25.51        56.81 
TCGA-73-4668 
       15.35 

$`PJA1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       50.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        4.96        28.96        22.03         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61        14.73 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       21.93        46.98        13.15        44.94        24.36        42.08 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3918 TCGA-44-3919 
       42.77         3.19         8.09        37.15        23.51         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
       23.74        13.71        12.59        13.38        10.78         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
       27.78        11.90         5.42        12.16        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
        5.16        15.02        12.13        29.26        17.13        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        70.55        14.96        25.81        31.04        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12        18.64        29.00        25.12        22.55 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
       42.31         3.88        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
       32.61         0.79        20.65        39.09        37.02        87.98 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        2.04        42.90        28.41        51.25        28.44         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       20.02        18.84        14.04        12.66         5.69         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        26.27 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 
        4.27         1.32         5.39         1.25        12.36        10.62 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33        10.16         2.60        13.71 

  PJA1 MUTATED PJA1 WILD-TYPE 
         15.35           0.07 
  PJA1 MUTATED PJA1 WILD-TYPE 
         56.81         120.79 
  PJA1 MUTATED PJA1 WILD-TYPE 
        38.240         20.035 
[1] "15.3 - 56.8 (38.2)" "0.1 - 120.8 (20.0)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
  "PJA1 MUTATED"   "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE"   "PJA1 MUTATED" "PJA1 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE"   "PJA1 MUTATED" "PJA1 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
  "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"PJA1 WILD-TYPE"   "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
  "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
  "PJA1 MUTATED"   "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE"   "PJA1 MUTATED" "PJA1 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE"   "PJA1 MUTATED" "PJA1 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
  "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"PJA1 WILD-TYPE"   "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
  "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
  "PJA1 MUTATED"   "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE"   "PJA1 MUTATED" "PJA1 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE"   "PJA1 MUTATED" "PJA1 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
  "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"PJA1 WILD-TYPE"   "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
  "PJA1 MUTATED" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
[1] "hr=" "4.7"
D58V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  PJA1 MUTATED          4        2         0         1          1          0
  PJA1 WILD-TYPE       33       51        11        22         32          6
                vv
clus             STAGE IV
  PJA1 MUTATED          0
  PJA1 WILD-TYPE        9
D58V3, multiclass
                vv
clus              T1  T2  T3  T4
  PJA1 MUTATED     4   4   0   0
  PJA1 WILD-TYPE  37 105  14   8
D58V4, multiclass
    clus
vv   PJA1 MUTATED PJA1 WILD-TYPE
  T1            4             37
  T2            4            105
  T3            0             14
  T4            0              8
                vv
clus             N0 N1 N2+N3
  PJA1 MUTATED    6  1     1
  PJA1 WILD-TYPE 89 36    34
D58V5, multiclass
       clus
vv      PJA1 MUTATED PJA1 WILD-TYPE
  N0               6             89
  N1               1             36
  N2+N3            1             34
                vv
clus              M0  M1  MX
  PJA1 MUTATED     8   0   0
  PJA1 WILD-TYPE 135   9  18
D58V6, multiclass
    clus
vv   PJA1 MUTATED PJA1 WILD-TYPE
  M0            8            135
  M1            0              9
  MX            0             18
D58V7, binary
                cls
clus              0  1
  PJA1 MUTATED    5  3
  PJA1 WILD-TYPE 88 76
[1] "tbl2"
                cls
clus             [,1] [,2]
  PJA1 MUTATED      5    3
  PJA1 WILD-TYPE   88   76
        clus
vv       PJA1 MUTATED PJA1 WILD-TYPE
  FEMALE            5             88
  MALE              3             76
D58V8, continuous
[1] "Remove cluster labels:" "PJA1 MUTATED"          
clus
  PJA1 MUTATED PJA1 WILD-TYPE 
             1             11 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-64-1677 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-64-5778     TCGA-71-6725     TCGA-73-4659     TCGA-73-4662 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-73-4666     TCGA-73-4676     TCGA-75-5122 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  PJA1 MUTATED                            0                                 2
  PJA1 WILD-TYPE                          2                                37
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  PJA1 MUTATED                                                    4
  PJA1 WILD-TYPE                                                111
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  PJA1 MUTATED                                            0
  PJA1 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  PJA1 MUTATED                                               0
  PJA1 WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  PJA1 MUTATED                                0
  PJA1 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  PJA1 MUTATED                                    1
  PJA1 WILD-TYPE                                  1
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  PJA1 MUTATED                              0                             1
  PJA1 WILD-TYPE                            2                             3
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  PJA1 MUTATED                                               0
  PJA1 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  PJA1 MUTATED                              0
  PJA1 WILD-TYPE                            2
D58V9, multiclass
D58V10, binary
                cls
clus               0   1
  PJA1 MUTATED     0   8
  PJA1 WILD-TYPE  14 150
[1] "tbl2"
                cls
clus             [,1] [,2]
  PJA1 MUTATED      0    8
  PJA1 WILD-TYPE   14  150
     clus
vv    PJA1 MUTATED PJA1 WILD-TYPE
  NO             0             14
  YES            8            150
D58V11, continuous
D58V12, continuous
                vv
clus              R0  R1  R2  RX
  PJA1 MUTATED     7   0   0   0
  PJA1 WILD-TYPE 108   6   4   9
D58V13, multiclass
    clus
vv   PJA1 MUTATED PJA1 WILD-TYPE
  R0            7            108
  R1            0              6
  R2            0              4
  RX            0              9

Clustering(59) Variable = SUN1 MUTATION ANALYSIS
D59V1, survival
                sevent
clus2             0  1
  SUN1 MUTATED    2  5
  SUN1 WILD-TYPE 97 51
  SUN1 MUTATED SUN1 WILD-TYPE 
             7            148 
  SUN1 MUTATED SUN1 WILD-TYPE 
             5             51 
$`SUN1 MUTATED`
TCGA-05-4396 TCGA-05-4397 TCGA-38-4628 TCGA-38-4631 TCGA-44-2659 TCGA-73-4658 
        9.96        24.03        49.02        11.64        44.94        52.57 
TCGA-73-4670 
        4.27 

$`SUN1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        4.96        28.96        22.03         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       28.37        35.28        44.61        14.73        21.93        46.98 
TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       13.15        24.36        42.08        42.77         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       37.15        38.24        23.51         6.21        23.74        13.71 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
       12.59        13.38        10.78         9.93        27.78        11.90 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42        12.16        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46         5.16        55.89 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        29.26        17.13        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       70.55        14.96        25.81        31.04        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12        18.64        29.00        25.12        22.55        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       87.98         2.04        42.90        28.41        51.25        28.44 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99        20.02        18.84        14.04        12.66         5.69 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
        4.60        13.87         2.01        23.38        29.95        26.27 
TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 
       15.35         1.32         5.39         1.25        12.36        10.62 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33        10.16         2.60        13.71 

  SUN1 MUTATED SUN1 WILD-TYPE 
          4.27           0.07 
  SUN1 MUTATED SUN1 WILD-TYPE 
         52.57         120.79 
  SUN1 MUTATED SUN1 WILD-TYPE 
        24.030         20.565 
[1] "4.3 - 52.6 (24.0)"  "0.1 - 120.8 (20.6)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE"   "SUN1 MUTATED"   "SUN1 MUTATED" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE"   "SUN1 MUTATED" "SUN1 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"SUN1 WILD-TYPE"   "SUN1 MUTATED" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE"   "SUN1 MUTATED" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
  "SUN1 MUTATED" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"SUN1 WILD-TYPE"   "SUN1 MUTATED" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE"   "SUN1 MUTATED"   "SUN1 MUTATED" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE"   "SUN1 MUTATED" "SUN1 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"SUN1 WILD-TYPE"   "SUN1 MUTATED" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE"   "SUN1 MUTATED" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
  "SUN1 MUTATED" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"SUN1 WILD-TYPE"   "SUN1 MUTATED" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE"   "SUN1 MUTATED"   "SUN1 MUTATED" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE"   "SUN1 MUTATED" "SUN1 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"SUN1 WILD-TYPE"   "SUN1 MUTATED" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE"   "SUN1 MUTATED" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
  "SUN1 MUTATED" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"SUN1 WILD-TYPE"   "SUN1 MUTATED" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
[1] "hr=" "1.6"
D59V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  SUN1 MUTATED          0        3         0         3          0          1
  SUN1 WILD-TYPE       37       50        11        20         33          5
                vv
clus             STAGE IV
  SUN1 MUTATED          1
  SUN1 WILD-TYPE        8
D59V3, multiclass
                vv
clus              T1  T2  T3  T4
  SUN1 MUTATED     1   6   0   1
  SUN1 WILD-TYPE  40 103  14   7
D59V4, multiclass
    clus
vv   SUN1 MUTATED SUN1 WILD-TYPE
  T1            1             40
  T2            6            103
  T3            0             14
  T4            1              7
                vv
clus             N0 N1 N2+N3
  SUN1 MUTATED    4  4     0
  SUN1 WILD-TYPE 91 33    35
D59V5, multiclass
       clus
vv      SUN1 MUTATED SUN1 WILD-TYPE
  N0               4             91
  N1               4             33
  N2+N3            0             35
                vv
clus              M0  M1  MX
  SUN1 MUTATED     7   1   0
  SUN1 WILD-TYPE 136   8  18
D59V6, multiclass
    clus
vv   SUN1 MUTATED SUN1 WILD-TYPE
  M0            7            136
  M1            1              8
  MX            0             18
D59V7, binary
                cls
clus              0  1
  SUN1 MUTATED    5  3
  SUN1 WILD-TYPE 88 76
[1] "tbl2"
                cls
clus             [,1] [,2]
  SUN1 MUTATED      5    3
  SUN1 WILD-TYPE   88   76
        clus
vv       SUN1 MUTATED SUN1 WILD-TYPE
  FEMALE            5             88
  MALE              3             76
D59V8, continuous
[1] "Remove cluster labels:" "SUN1 MUTATED"          
clus
  SUN1 MUTATED SUN1 WILD-TYPE 
             1             11 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-64-1677 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-64-5778     TCGA-71-6725     TCGA-73-4659     TCGA-73-4662 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-73-4666     TCGA-73-4668     TCGA-73-4676 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  SUN1 MUTATED                            0                                 2
  SUN1 WILD-TYPE                          2                                37
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SUN1 MUTATED                                                    6
  SUN1 WILD-TYPE                                                109
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  SUN1 MUTATED                                            0
  SUN1 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  SUN1 MUTATED                                               0
  SUN1 WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  SUN1 MUTATED                                0
  SUN1 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  SUN1 MUTATED                                    0
  SUN1 WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  SUN1 MUTATED                              0                             0
  SUN1 WILD-TYPE                            2                             4
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  SUN1 MUTATED                                               0
  SUN1 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  SUN1 MUTATED                              0
  SUN1 WILD-TYPE                            2
D59V9, multiclass
D59V10, binary
                cls
clus               0   1
  SUN1 MUTATED     0   8
  SUN1 WILD-TYPE  14 150
[1] "tbl2"
                cls
clus             [,1] [,2]
  SUN1 MUTATED      0    8
  SUN1 WILD-TYPE   14  150
     clus
vv    SUN1 MUTATED SUN1 WILD-TYPE
  NO             0             14
  YES            8            150
D59V11, continuous
D59V12, continuous
                vv
clus              R0  R1  R2  RX
  SUN1 MUTATED     8   0   0   0
  SUN1 WILD-TYPE 107   6   4   9
D59V13, multiclass
    clus
vv   SUN1 MUTATED SUN1 WILD-TYPE
  R0            8            107
  R1            0              6
  R2            0              4
  RX            0              9

Clustering(60) Variable = RUFY2 MUTATION ANALYSIS
D60V1, survival
                 sevent
clus2              0  1
  RUFY2 MUTATED    2  5
  RUFY2 WILD-TYPE 97 51
  RUFY2 MUTATED RUFY2 WILD-TYPE 
              7             148 
  RUFY2 MUTATED RUFY2 WILD-TYPE 
              5              51 
$`RUFY2 MUTATED`
TCGA-05-4396 TCGA-38-4631 TCGA-44-2668 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        9.96        11.64         8.09        32.45        36.49        16.41 
TCGA-73-4670 
        4.27 

$`RUFY2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 
       15.02         4.96        28.96        22.03         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        97.74       120.79 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 
       37.71        49.02        28.37        35.28        44.61        14.73 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       21.93        46.98        13.15        44.94        24.36        42.08 
TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
       42.77         3.19        37.15        38.24        23.51         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
       23.74        13.71        12.59        13.38        10.78         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-49-4486 
       27.78        11.90         5.42        12.16        63.72        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46         5.16        55.89        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        29.26        17.13        20.48        71.47        70.55 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81        31.04        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
       18.64        29.00        25.12        22.55        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        87.98 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        2.04        42.90        28.41        51.25        28.44         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       20.02        18.84        14.04        12.66         5.69         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        26.27 
TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 
       15.35         1.32         5.39         1.25        12.36        10.62 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33        10.16         2.60        13.71 

  RUFY2 MUTATED RUFY2 WILD-TYPE 
           4.27            0.07 
  RUFY2 MUTATED RUFY2 WILD-TYPE 
          36.49          120.79 
  RUFY2 MUTATED RUFY2 WILD-TYPE 
          11.64           21.70 
[1] "4.3 - 36.5 (11.6)"  "0.1 - 120.8 (21.7)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE"   "RUFY2 MUTATED" "RUFY2 WILD-TYPE" 
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"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
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"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"RUFY2 WILD-TYPE"   "RUFY2 MUTATED" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
  "RUFY2 MUTATED" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
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"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
  "RUFY2 MUTATED"   "RUFY2 MUTATED"   "RUFY2 MUTATED" "RUFY2 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
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"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
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"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
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"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
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"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
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"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
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"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
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"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"RUFY2 WILD-TYPE"   "RUFY2 MUTATED" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE"   "RUFY2 MUTATED" "RUFY2 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"RUFY2 WILD-TYPE"   "RUFY2 MUTATED" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
  "RUFY2 MUTATED" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
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"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
  "RUFY2 MUTATED"   "RUFY2 MUTATED"   "RUFY2 MUTATED" "RUFY2 WILD-TYPE" 
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"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
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"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
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"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"RUFY2 WILD-TYPE"   "RUFY2 MUTATED" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
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"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE"   "RUFY2 MUTATED" "RUFY2 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
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"RUFY2 WILD-TYPE"   "RUFY2 MUTATED" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
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"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
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  "RUFY2 MUTATED" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
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"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
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"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
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"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
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"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
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"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
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"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
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"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
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"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
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"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
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"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
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"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
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"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
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"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
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"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
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"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
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"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
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"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"RUFY2 WILD-TYPE"   "RUFY2 MUTATED" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
[1] "hr=" "3.3"
D60V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  RUFY2 MUTATED          1        3         0         1          0          1
  RUFY2 WILD-TYPE       36       50        11        22         33          5
                 vv
clus              STAGE IV
  RUFY2 MUTATED          1
  RUFY2 WILD-TYPE        8
D60V3, multiclass
                 vv
clus               T1  T2  T3  T4
  RUFY2 MUTATED     1   5   0   1
  RUFY2 WILD-TYPE  40 104  14   7
D60V4, multiclass
    clus
vv   RUFY2 MUTATED RUFY2 WILD-TYPE
  T1             1              40
  T2             5             104
  T3             0              14
  T4             1               7
                 vv
clus              N0 N1 N2+N3
  RUFY2 MUTATED    4  2     0
  RUFY2 WILD-TYPE 91 35    35
D60V5, multiclass
       clus
vv      RUFY2 MUTATED RUFY2 WILD-TYPE
  N0                4              91
  N1                2              35
  N2+N3             0              35
                 vv
clus               M0  M1  MX
  RUFY2 MUTATED     3   1   3
  RUFY2 WILD-TYPE 140   8  15
D60V6, multiclass
    clus
vv   RUFY2 MUTATED RUFY2 WILD-TYPE
  M0             3             140
  M1             1               8
  MX             3              15
D60V7, binary
                 cls
clus               0  1
  RUFY2 MUTATED    4  3
  RUFY2 WILD-TYPE 89 76
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RUFY2 MUTATED      4    3
  RUFY2 WILD-TYPE   89   76
        clus
vv       RUFY2 MUTATED RUFY2 WILD-TYPE
  FEMALE             4              89
  MALE               3              76
D60V8, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  RUFY2 MUTATED                            0                                 1
  RUFY2 WILD-TYPE                          2                                38
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  RUFY2 MUTATED                                                    6
  RUFY2 WILD-TYPE                                                109
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  RUFY2 MUTATED                                            0
  RUFY2 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  RUFY2 MUTATED                                               0
  RUFY2 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  RUFY2 MUTATED                                0
  RUFY2 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  RUFY2 MUTATED                                    0
  RUFY2 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  RUFY2 MUTATED                              0                             0
  RUFY2 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  RUFY2 MUTATED                                               0
  RUFY2 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  RUFY2 MUTATED                              0
  RUFY2 WILD-TYPE                            2
D60V9, multiclass
D60V10, binary
                 cls
clus                0   1
  RUFY2 MUTATED     1   6
  RUFY2 WILD-TYPE  13 152
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RUFY2 MUTATED      1    6
  RUFY2 WILD-TYPE   13  152
     clus
vv    RUFY2 MUTATED RUFY2 WILD-TYPE
  NO              1              13
  YES             6             152
D60V11, continuous
D60V12, continuous
                 vv
clus               R0  R1  R2  RX
  RUFY2 MUTATED     4   0   0   0
  RUFY2 WILD-TYPE 111   6   4   9
D60V13, multiclass
    clus
vv   RUFY2 MUTATED RUFY2 WILD-TYPE
  R0             4             111
  R1             0               6
  R2             0               4
  RX             0               9

Clustering(61) Variable = PABPC3 MUTATION ANALYSIS
D61V1, survival
                  sevent
clus2               0  1
  PABPC3 MUTATED    7  0
  PABPC3 WILD-TYPE 92 56
  PABPC3 MUTATED PABPC3 WILD-TYPE 
               7              148 
  PABPC3 MUTATED PABPC3 WILD-TYPE 
               0               56 
$`PABPC3 MUTATED`
TCGA-05-4390 TCGA-05-4426 TCGA-05-4427 TCGA-44-6776 TCGA-67-3771 TCGA-67-6215 
       37.02        26.01        26.01        63.72        20.02         5.69 
TCGA-73-4666 
       26.27 

$`PABPC3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4396 
       50.07         3.98        19.92        14.01        45.01         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02        15.02         4.96 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
       28.96        22.03         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        97.74       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61        14.73        21.93 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       46.98        13.15        44.94        24.36        42.08        42.77 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        37.15        38.24        23.51         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
       23.74        13.71        12.59        13.38        10.78         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6777 TCGA-44-6778 
       27.78        11.90         5.42        12.16        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46         5.16 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       55.89        15.02        12.13        29.26        17.13        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        70.55        14.96        25.81        31.04        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12        18.64        29.00        25.12        22.55 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        87.98         2.04        42.90        28.41        51.25 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6216 
       28.44         0.99        18.84        14.04        12.66         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 
       13.87         2.01        52.57        23.38        29.95        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 
        4.27         1.32         5.39         1.25        12.36        10.62 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33        10.16         2.60        13.71 

  PABPC3 MUTATED PABPC3 WILD-TYPE 
            5.69             0.07 
  PABPC3 MUTATED PABPC3 WILD-TYPE 
           63.72           120.79 
  PABPC3 MUTATED PABPC3 WILD-TYPE 
          26.010           20.265 
[1] "5.7 - 63.7 (26.0)"  "0.1 - 120.8 (20.3)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"PABPC3 WILD-TYPE"   "PABPC3 MUTATED" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "PABPC3 MUTATED" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
  "PABPC3 MUTATED" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
  "PABPC3 MUTATED" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"PABPC3 WILD-TYPE"   "PABPC3 MUTATED" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "PABPC3 MUTATED" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
  "PABPC3 MUTATED" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
  "PABPC3 MUTATED" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"PABPC3 WILD-TYPE"   "PABPC3 MUTATED" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "PABPC3 MUTATED" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
  "PABPC3 MUTATED" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
  "PABPC3 MUTATED" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE"   "PABPC3 MUTATED" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D61V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  PABPC3 MUTATED          2        4         0         1          0          0
  PABPC3 WILD-TYPE       35       49        11        22         33          6
                  vv
clus               STAGE IV
  PABPC3 MUTATED          2
  PABPC3 WILD-TYPE        7
D61V3, multiclass
                  vv
clus                T1  T2  T3  T4
  PABPC3 MUTATED     3   6   0   0
  PABPC3 WILD-TYPE  38 103  14   8
D61V4, multiclass
    clus
vv   PABPC3 MUTATED PABPC3 WILD-TYPE
  T1              3               38
  T2              6              103
  T3              0               14
  T4              0                8
                  vv
clus               N0 N1 N2+N3
  PABPC3 MUTATED    7  1     1
  PABPC3 WILD-TYPE 88 36    34
D61V5, multiclass
       clus
vv      PABPC3 MUTATED PABPC3 WILD-TYPE
  N0                 7               88
  N1                 1               36
  N2+N3              1               34
                  vv
clus                M0  M1  MX
  PABPC3 MUTATED     6   2   1
  PABPC3 WILD-TYPE 137   7  17
D61V6, multiclass
    clus
vv   PABPC3 MUTATED PABPC3 WILD-TYPE
  M0              6              137
  M1              2                7
  MX              1               17
D61V7, binary
                  cls
clus                0  1
  PABPC3 MUTATED    6  3
  PABPC3 WILD-TYPE 87 76
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PABPC3 MUTATED      6    3
  PABPC3 WILD-TYPE   87   76
        clus
vv       PABPC3 MUTATED PABPC3 WILD-TYPE
  FEMALE              6               87
  MALE                3               76
D61V8, continuous
[1] "Remove cluster labels:" "PABPC3 MUTATED"        
clus
  PABPC3 MUTATED PABPC3 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-64-5778       TCGA-71-6725       TCGA-73-4659       TCGA-73-4662 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  PABPC3 MUTATED                            0                                 4
  PABPC3 WILD-TYPE                          2                                35
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  PABPC3 MUTATED                                                    5
  PABPC3 WILD-TYPE                                                110
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  PABPC3 MUTATED                                            0
  PABPC3 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  PABPC3 MUTATED                                               0
  PABPC3 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  PABPC3 MUTATED                                0
  PABPC3 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  PABPC3 MUTATED                                    0
  PABPC3 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  PABPC3 MUTATED                              0                             0
  PABPC3 WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  PABPC3 MUTATED                                               0
  PABPC3 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  PABPC3 MUTATED                              0
  PABPC3 WILD-TYPE                            2
D61V9, multiclass
D61V10, binary
                  cls
clus                 0   1
  PABPC3 MUTATED     1   8
  PABPC3 WILD-TYPE  13 150
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PABPC3 MUTATED      1    8
  PABPC3 WILD-TYPE   13  150
     clus
vv    PABPC3 MUTATED PABPC3 WILD-TYPE
  NO               1               13
  YES              8              150
D61V11, continuous
D61V12, continuous
                  vv
clus                R0  R1  R2  RX
  PABPC3 MUTATED     6   0   0   2
  PABPC3 WILD-TYPE 109   6   4   7
D61V13, multiclass
    clus
vv   PABPC3 MUTATED PABPC3 WILD-TYPE
  R0              6              109
  R1              0                6
  R2              0                4
  RX              2                7

Clustering(62) Variable = STXBP5L MUTATION ANALYSIS
D62V1, survival
                   sevent
clus2                0  1
  STXBP5L MUTATED    8  3
  STXBP5L WILD-TYPE 91 53
  STXBP5L MUTATED STXBP5L WILD-TYPE 
               11               144 
  STXBP5L MUTATED STXBP5L WILD-TYPE 
                3                53 
$`STXBP5L MUTATED`
TCGA-05-4396 TCGA-38-4625 TCGA-38-4626 TCGA-44-2659 TCGA-44-4112 TCGA-44-6778 
        9.96        97.74       120.79        44.94        23.74        36.49 
TCGA-49-4505 TCGA-49-6744 TCGA-50-5941 TCGA-67-6217 TCGA-91-6836 
       14.07        29.26        18.64        13.87        13.71 

$`STXBP5L WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 
       15.02         4.96        28.96        22.03         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4627 TCGA-38-4628 
        0.46         7.36         5.95         8.68        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61        14.73        21.93 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       46.98        13.15        24.36        42.08        42.77         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-5643 
        8.09        37.15        38.24        23.51         6.21        13.71 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
       12.59        13.38        10.78         9.93        27.78        11.90 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 TCGA-49-4486 
        5.42        12.16        63.72        32.45        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 
       28.11        28.57        12.66        35.54        46.72        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46         5.16        55.89        15.02        12.13 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
       17.13        20.48        71.47        70.55        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       31.04        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 
       77.88        21.47         8.45        15.12        29.00        25.12 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       22.55        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        87.98         2.04        42.90        28.41 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       51.25        28.44         0.99        20.02        18.84        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
       12.66         5.69         4.60         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        26.27        15.35         4.27         1.32         5.39 
TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.25        12.36        10.62        41.33        10.16         2.60 

  STXBP5L MUTATED STXBP5L WILD-TYPE 
             9.96              0.07 
  STXBP5L MUTATED STXBP5L WILD-TYPE 
           120.79             87.98 
  STXBP5L MUTATED STXBP5L WILD-TYPE 
           23.740            20.565 
[1] "10.0 - 120.8 (23.7)" "0.1 - 88.0 (20.6)"  
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
  "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" "STXBP5L WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE"   "STXBP5L MUTATED" 
[1] "hr=" "2.3"
D62V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  STXBP5L MUTATED          1        4         3         2          1          1
  STXBP5L WILD-TYPE       36       49         8        21         32          5
                   vv
clus                STAGE IV
  STXBP5L MUTATED          0
  STXBP5L WILD-TYPE        9
D62V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  STXBP5L MUTATED     2   9   0   1
  STXBP5L WILD-TYPE  39 100  14   7
D62V4, multiclass
    clus
vv   STXBP5L MUTATED STXBP5L WILD-TYPE
  T1               2                39
  T2               9               100
  T3               0                14
  T4               1                 7
                   vv
clus                N0 N1 N2+N3
  STXBP5L MUTATED    6  5     1
  STXBP5L WILD-TYPE 89 32    34
D62V5, multiclass
       clus
vv      STXBP5L MUTATED STXBP5L WILD-TYPE
  N0                  6                89
  N1                  5                32
  N2+N3               1                34
                   vv
clus                 M0  M1  MX
  STXBP5L MUTATED     9   0   3
  STXBP5L WILD-TYPE 134   9  15
D62V6, multiclass
    clus
vv   STXBP5L MUTATED STXBP5L WILD-TYPE
  M0               9               134
  M1               0                 9
  MX               3                15
D62V7, binary
                   cls
clus                 0  1
  STXBP5L MUTATED    9  3
  STXBP5L WILD-TYPE 84 76
[1] "tbl2"
                   cls
clus                [,1] [,2]
  STXBP5L MUTATED      9    3
  STXBP5L WILD-TYPE   84   76
        clus
vv       STXBP5L MUTATED STXBP5L WILD-TYPE
  FEMALE               9                84
  MALE                 3                76
D62V8, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  STXBP5L MUTATED                            0
  STXBP5L WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  STXBP5L MUTATED                                   3
  STXBP5L WILD-TYPE                                36
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  STXBP5L MUTATED                                                    9
  STXBP5L WILD-TYPE                                                106
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  STXBP5L MUTATED                                            0
  STXBP5L WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  STXBP5L MUTATED                                               0
  STXBP5L WILD-TYPE                                             2
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  STXBP5L MUTATED                                0
  STXBP5L WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  STXBP5L MUTATED                                    0
  STXBP5L WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  STXBP5L MUTATED                              0                             0
  STXBP5L WILD-TYPE                            2                             4
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  STXBP5L MUTATED                                               0
  STXBP5L WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  STXBP5L MUTATED                              0
  STXBP5L WILD-TYPE                            2
D62V9, multiclass
D62V10, binary
                   cls
clus                  0   1
  STXBP5L MUTATED     0  12
  STXBP5L WILD-TYPE  14 146
[1] "tbl2"
                   cls
clus                [,1] [,2]
  STXBP5L MUTATED      0   12
  STXBP5L WILD-TYPE   14  146
     clus
vv    STXBP5L MUTATED STXBP5L WILD-TYPE
  NO                0                14
  YES              12               146
D62V11, continuous
D62V12, continuous
                   vv
clus                 R0  R1  R2  RX
  STXBP5L MUTATED     8   0   0   1
  STXBP5L WILD-TYPE 107   6   4   8
D62V13, multiclass
    clus
vv   STXBP5L MUTATED STXBP5L WILD-TYPE
  R0               8               107
  R1               0                 6
  R2               0                 4
  RX               1                 8

Clustering(63) Variable = ELTD1 MUTATION ANALYSIS
D63V1, survival
                 sevent
clus2              0  1
  ELTD1 MUTATED    4  8
  ELTD1 WILD-TYPE 95 48
  ELTD1 MUTATED ELTD1 WILD-TYPE 
             12             143 
  ELTD1 MUTATED ELTD1 WILD-TYPE 
              8              48 
$`ELTD1 MUTATED`
TCGA-05-4250 TCGA-05-4396 TCGA-05-4427 TCGA-44-2656 TCGA-49-4494 TCGA-49-6743 
        3.98         9.96        26.01        46.98        35.54        12.13 
TCGA-50-5072 TCGA-50-6590 TCGA-50-6594 TCGA-64-1677 TCGA-73-4668 TCGA-91-6829 
        8.05        42.31        12.16        20.65        15.35        41.33 

$`ELTD1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4397 
       50.07        19.92        14.01        45.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02        15.02         4.96 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
       28.96        22.03         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        97.74       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61        14.73        21.93 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        44.94        24.36        42.08        42.77         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        37.15        38.24        23.51         6.21        23.74 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       13.71        12.59        13.38        10.78         9.93        27.78 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
       11.90         5.42        12.16        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4501 
       16.41        76.21        28.11        28.57        12.66        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46         5.16        55.89 
TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       15.02        29.26        17.13        20.48        71.47        70.55 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5930 TCGA-50-5931 
       14.96        25.81        31.04        49.28         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12        18.64 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       29.00        25.12        22.55         3.88        25.51        11.05 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1678 
        2.86         0.07        32.61         0.79        56.81        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        87.98         2.04        42.90        28.41        51.25 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       28.44         0.99        20.02        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        5.69         4.60        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       29.95        26.27         4.27         1.32         5.39         1.25 
TCGA-86-6562 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       12.36        10.62        10.16         2.60        13.71 

  ELTD1 MUTATED ELTD1 WILD-TYPE 
           3.98            0.07 
  ELTD1 MUTATED ELTD1 WILD-TYPE 
          46.98          120.79 
  ELTD1 MUTATED ELTD1 WILD-TYPE 
          18.00           21.47 
[1] "4.0 - 47.0 (18.0)"  "0.1 - 120.8 (21.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
  "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
  "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
  "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
  "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
  "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
  "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
[1] "hr=" "2.2"
D63V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  ELTD1 MUTATED          0        4         0         4          6          1
  ELTD1 WILD-TYPE       37       49        11        19         27          5
                 vv
clus              STAGE IV
  ELTD1 MUTATED          0
  ELTD1 WILD-TYPE        9
D63V3, multiclass
                 vv
clus               T1  T2  T3  T4
  ELTD1 MUTATED     1   9   4   1
  ELTD1 WILD-TYPE  40 100  10   7
D63V4, multiclass
    clus
vv   ELTD1 MUTATED ELTD1 WILD-TYPE
  T1             1              40
  T2             9             100
  T3             4              10
  T4             1               7
                 vv
clus              N0 N1 N2+N3
  ELTD1 MUTATED    5  5     5
  ELTD1 WILD-TYPE 90 32    30
D63V5, multiclass
       clus
vv      ELTD1 MUTATED ELTD1 WILD-TYPE
  N0                5              90
  N1                5              32
  N2+N3             5              30
                 vv
clus               M0  M1  MX
  ELTD1 MUTATED    12   0   3
  ELTD1 WILD-TYPE 131   9  15
D63V6, multiclass
    clus
vv   ELTD1 MUTATED ELTD1 WILD-TYPE
  M0            12             131
  M1             0               9
  MX             3              15
D63V7, binary
                 cls
clus               0  1
  ELTD1 MUTATED    9  6
  ELTD1 WILD-TYPE 84 73
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ELTD1 MUTATED      9    6
  ELTD1 WILD-TYPE   84   73
        clus
vv       ELTD1 MUTATED ELTD1 WILD-TYPE
  FEMALE             9              84
  MALE               6              73
D63V8, continuous
[1] "Remove cluster labels:" "ELTD1 MUTATED"         
clus
  ELTD1 MUTATED ELTD1 WILD-TYPE 
              2              10 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-5778 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-73-4676      TCGA-75-5122 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  ELTD1 MUTATED                            0                                 2
  ELTD1 WILD-TYPE                          2                                37
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ELTD1 MUTATED                                                   10
  ELTD1 WILD-TYPE                                                105
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  ELTD1 MUTATED                                            0
  ELTD1 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  ELTD1 MUTATED                                               1
  ELTD1 WILD-TYPE                                             1
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  ELTD1 MUTATED                                1
  ELTD1 WILD-TYPE                              1
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  ELTD1 MUTATED                                    1
  ELTD1 WILD-TYPE                                  1
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  ELTD1 MUTATED                              0                             0
  ELTD1 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  ELTD1 MUTATED                                               0
  ELTD1 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  ELTD1 MUTATED                              0
  ELTD1 WILD-TYPE                            2
D63V9, multiclass
D63V10, binary
                 cls
clus                0   1
  ELTD1 MUTATED     1  14
  ELTD1 WILD-TYPE  13 144
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ELTD1 MUTATED      1   14
  ELTD1 WILD-TYPE   13  144
     clus
vv    ELTD1 MUTATED ELTD1 WILD-TYPE
  NO              1              13
  YES            14             144
D63V11, continuous
D63V12, continuous
                 vv
clus               R0  R1  R2  RX
  ELTD1 MUTATED     9   0   1   0
  ELTD1 WILD-TYPE 106   6   3   9
D63V13, multiclass
    clus
vv   ELTD1 MUTATED ELTD1 WILD-TYPE
  R0             9             106
  R1             0               6
  R2             1               3
  RX             0               9

Clustering(64) Variable = KRT28 MUTATION ANALYSIS
D64V1, survival
                 sevent
clus2              0  1
  KRT28 MUTATED    4  3
  KRT28 WILD-TYPE 95 53
  KRT28 MUTATED KRT28 WILD-TYPE 
              7             148 
  KRT28 MUTATED KRT28 WILD-TYPE 
              3              53 
$`KRT28 MUTATED`
TCGA-05-4398 TCGA-44-2659 TCGA-49-6743 TCGA-50-5044 TCGA-50-5045 TCGA-64-5779 
       47.05        44.94        12.13        20.48        71.47        28.41 
TCGA-91-6829 
       41.33 

$`KRT28 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
        9.96        24.03         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 
       15.02         4.96        28.96        22.03         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        97.74       120.79 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 
       14.73        21.93        46.98        13.15        24.36        42.08 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       42.77         3.19         8.09        37.15        38.24        23.51 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21        23.74        13.71        12.59        13.38        10.78 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93        27.78        11.90         5.42        12.16        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 
       29.46         5.16        55.89        15.02        29.26        17.13 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       70.55        14.96        25.81        31.04        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12        18.64        29.00        25.12        22.55        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
       87.98         2.04        42.90        51.25        28.44         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       20.02        18.84        14.04        12.66         5.69         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        26.27 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 
       15.35         4.27         1.32         5.39         1.25        12.36 
TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       10.62        10.16         2.60        13.71 

  KRT28 MUTATED KRT28 WILD-TYPE 
          12.13            0.07 
  KRT28 MUTATED KRT28 WILD-TYPE 
          71.47          120.79 
  KRT28 MUTATED KRT28 WILD-TYPE 
         41.330          20.035 
[1] "12.1 - 71.5 (41.3)" "0.1 - 120.8 (20.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "KRT28 MUTATED" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE"   "KRT28 MUTATED" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
  "KRT28 MUTATED" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE"   "KRT28 MUTATED" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
  "KRT28 MUTATED" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
  "KRT28 MUTATED" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE"   "KRT28 MUTATED" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "KRT28 MUTATED" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE"   "KRT28 MUTATED" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
  "KRT28 MUTATED" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE"   "KRT28 MUTATED" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
  "KRT28 MUTATED" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
  "KRT28 MUTATED" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE"   "KRT28 MUTATED" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "KRT28 MUTATED" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE"   "KRT28 MUTATED" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
  "KRT28 MUTATED" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE"   "KRT28 MUTATED" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
  "KRT28 MUTATED" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
  "KRT28 MUTATED" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE"   "KRT28 MUTATED" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
[1] "hr=" "1.4"
D64V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  KRT28 MUTATED          1        1         0         1          2          2
  KRT28 WILD-TYPE       36       52        11        22         31          4
                 vv
clus              STAGE IV
  KRT28 MUTATED          0
  KRT28 WILD-TYPE        9
D64V3, multiclass
                 vv
clus               T1  T2  T3  T4
  KRT28 MUTATED     2   3   0   2
  KRT28 WILD-TYPE  39 106  14   6
D64V4, multiclass
    clus
vv   KRT28 MUTATED KRT28 WILD-TYPE
  T1             2              39
  T2             3             106
  T3             0              14
  T4             2               6
                 vv
clus              N0 N1 N2+N3
  KRT28 MUTATED    1  3     3
  KRT28 WILD-TYPE 94 34    32
D64V5, multiclass
       clus
vv      KRT28 MUTATED KRT28 WILD-TYPE
  N0                1              94
  N1                3              34
  N2+N3             3              32
                 vv
clus               M0  M1  MX
  KRT28 MUTATED     5   0   2
  KRT28 WILD-TYPE 138   9  16
D64V6, multiclass
    clus
vv   KRT28 MUTATED KRT28 WILD-TYPE
  M0             5             138
  M1             0               9
  MX             2              16
D64V7, binary
                 cls
clus               0  1
  KRT28 MUTATED    5  2
  KRT28 WILD-TYPE 88 77
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KRT28 MUTATED      5    2
  KRT28 WILD-TYPE   88   77
        clus
vv       KRT28 MUTATED KRT28 WILD-TYPE
  FEMALE             5              88
  MALE               2              77
D64V8, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  KRT28 MUTATED                            1                                 1
  KRT28 WILD-TYPE                          1                                38
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  KRT28 MUTATED                                                    3
  KRT28 WILD-TYPE                                                112
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  KRT28 MUTATED                                            0
  KRT28 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  KRT28 MUTATED                                               1
  KRT28 WILD-TYPE                                             1
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  KRT28 MUTATED                                1
  KRT28 WILD-TYPE                              1
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  KRT28 MUTATED                                    0
  KRT28 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  KRT28 MUTATED                              0                             0
  KRT28 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  KRT28 MUTATED                                               0
  KRT28 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  KRT28 MUTATED                              0
  KRT28 WILD-TYPE                            2
D64V9, multiclass
D64V10, binary
                 cls
clus                0   1
  KRT28 MUTATED     2   5
  KRT28 WILD-TYPE  12 153
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KRT28 MUTATED      2    5
  KRT28 WILD-TYPE   12  153
     clus
vv    KRT28 MUTATED KRT28 WILD-TYPE
  NO              2              12
  YES             5             153
D64V11, continuous
D64V12, continuous
                 vv
clus               R0  R1  R2  RX
  KRT28 MUTATED     4   0   0   0
  KRT28 WILD-TYPE 111   6   4   9
D64V13, multiclass
    clus
vv   KRT28 MUTATED KRT28 WILD-TYPE
  R0             4             111
  R1             0               6
  R2             0               4
  RX             0               9

Clustering(65) Variable = EPHA6 MUTATION ANALYSIS
D65V1, survival
                 sevent
clus2              0  1
  EPHA6 MUTATED   14  7
  EPHA6 WILD-TYPE 85 49
  EPHA6 MUTATED EPHA6 WILD-TYPE 
             21             134 
  EPHA6 MUTATED EPHA6 WILD-TYPE 
              7              49 
$`EPHA6 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4427 
       19.92         9.96         8.98        29.95        30.02        26.01 
TCGA-38-4628 TCGA-44-2656 TCGA-44-2668 TCGA-44-6778 TCGA-49-4494 TCGA-50-5066 
       49.02        46.98         8.09        36.49        35.54        31.04 
TCGA-50-5942 TCGA-55-1595 TCGA-64-5778 TCGA-64-5779 TCGA-67-3771 TCGA-67-3773 
       29.00        48.62        42.90        28.41        20.02        14.04 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4677 
       23.38        29.95         1.25 

$`EPHA6 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4397 
       50.07         3.98        14.01        45.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       12.00        21.99        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 
       15.02        15.02         4.96        28.96        22.03         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        97.74 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
      120.79        37.71        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       14.73        21.93        13.15        44.94        24.36        42.08 
TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
       42.77         3.19        37.15        38.24        23.51         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
       23.74        13.71        12.59        13.38        10.78         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
       27.78        11.90         5.42        12.16        63.72        32.45 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4501 
       16.41        76.21        28.11        28.57        12.66        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46         5.16        55.89 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        29.26        17.13        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       70.55        14.96        25.81        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
       18.64        25.12        22.55        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5781 
       20.65        39.09        37.02        87.98         2.04        51.25 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       28.44         0.99        18.84        12.66         5.69         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       13.87         2.01        52.57        26.27        15.35         4.27 
TCGA-73-4675 TCGA-73-4676 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         5.39        12.36        10.62        41.33        10.16 
TCGA-91-6835 TCGA-91-6836 
        2.60        13.71 

  EPHA6 MUTATED EPHA6 WILD-TYPE 
           1.25            0.07 
  EPHA6 MUTATED EPHA6 WILD-TYPE 
          49.02          120.79 
  EPHA6 MUTATED EPHA6 WILD-TYPE 
          29.00           18.92 
[1] "1.2 - 49.0 (29.0)"  "0.1 - 120.8 (18.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED"   "EPHA6 MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"EPHA6 WILD-TYPE"   "EPHA6 MUTATED"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED"   "EPHA6 MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"EPHA6 WILD-TYPE"   "EPHA6 MUTATED"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED"   "EPHA6 MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"EPHA6 WILD-TYPE"   "EPHA6 MUTATED"   "EPHA6 MUTATED" "EPHA6 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
  "EPHA6 MUTATED" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" "EPHA6 WILD-TYPE" 
[1] "hr=" "1.2"
D65V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  EPHA6 MUTATED          6        7         0         3          5          1
  EPHA6 WILD-TYPE       31       46        11        20         28          5
                 vv
clus              STAGE IV
  EPHA6 MUTATED          0
  EPHA6 WILD-TYPE        9
D65V3, multiclass
                 vv
clus              T1 T2 T3 T4
  EPHA6 MUTATED    5 12  4  1
  EPHA6 WILD-TYPE 36 97 10  7
D65V4, multiclass
    clus
vv   EPHA6 MUTATED EPHA6 WILD-TYPE
  T1             5              36
  T2            12              97
  T3             4              10
  T4             1               7
                 vv
clus              N0 N1 N2+N3
  EPHA6 MUTATED   14  3     5
  EPHA6 WILD-TYPE 81 34    30
D65V5, multiclass
       clus
vv      EPHA6 MUTATED EPHA6 WILD-TYPE
  N0               14              81
  N1                3              34
  N2+N3             5              30
                 vv
clus               M0  M1  MX
  EPHA6 MUTATED    21   0   1
  EPHA6 WILD-TYPE 122   9  17
D65V6, multiclass
    clus
vv   EPHA6 MUTATED EPHA6 WILD-TYPE
  M0            21             122
  M1             0               9
  MX             1              17
D65V7, binary
                 cls
clus               0  1
  EPHA6 MUTATED    8 14
  EPHA6 WILD-TYPE 85 65
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHA6 MUTATED      8   14
  EPHA6 WILD-TYPE   85   65
        clus
vv       EPHA6 MUTATED EPHA6 WILD-TYPE
  FEMALE             8              85
  MALE              14              65
D65V8, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  EPHA6 MUTATED                            1                                 7
  EPHA6 WILD-TYPE                          1                                32
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  EPHA6 MUTATED                                                   11
  EPHA6 WILD-TYPE                                                104
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  EPHA6 MUTATED                                            0
  EPHA6 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  EPHA6 MUTATED                                               1
  EPHA6 WILD-TYPE                                             1
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  EPHA6 MUTATED                                1
  EPHA6 WILD-TYPE                              1
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  EPHA6 MUTATED                                    0
  EPHA6 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  EPHA6 MUTATED                              0                             1
  EPHA6 WILD-TYPE                            2                             3
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  EPHA6 MUTATED                                               0
  EPHA6 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  EPHA6 MUTATED                              0
  EPHA6 WILD-TYPE                            2
D65V9, multiclass
D65V10, binary
                 cls
clus                0   1
  EPHA6 MUTATED     2  20
  EPHA6 WILD-TYPE  12 138
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHA6 MUTATED      2   20
  EPHA6 WILD-TYPE   12  138
     clus
vv    EPHA6 MUTATED EPHA6 WILD-TYPE
  NO              2              12
  YES            20             138
D65V11, continuous
D65V12, continuous
                 vv
clus              R0 R1 R2 RX
  EPHA6 MUTATED   17  1  1  0
  EPHA6 WILD-TYPE 98  5  3  9
D65V13, multiclass
    clus
vv   EPHA6 MUTATED EPHA6 WILD-TYPE
  R0            17              98
  R1             1               5
  R2             1               3
  RX             0               9

Clustering(66) Variable = OR10R2 MUTATION ANALYSIS
D66V1, survival
                  sevent
clus2               0  1
  OR10R2 MUTATED    6  3
  OR10R2 WILD-TYPE 93 53
  OR10R2 MUTATED OR10R2 WILD-TYPE 
               9              146 
  OR10R2 MUTATED OR10R2 WILD-TYPE 
               3               53 
$`OR10R2 MUTATED`
TCGA-05-4396 TCGA-05-4427 TCGA-05-4430 TCGA-44-2659 TCGA-44-3918 TCGA-49-4487 
        9.96        26.01        25.02        44.94        23.51        28.11 
TCGA-49-6742 TCGA-50-6594 TCGA-64-5781 
       15.02        12.16        51.25 

$`OR10R2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       26.01        25.02        24.00        15.02        15.02         4.96 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
       28.96        22.03         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        97.74       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61        14.73        21.93 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       46.98        13.15        24.36        42.08        42.77         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
        8.09        37.15        38.24         6.21        23.74        13.71 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
       12.59        13.38        10.78         9.93        27.78        11.90 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42        12.16        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       76.21        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 
       32.84         8.81        29.46         5.16        55.89        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       29.26        17.13        20.48        71.47        70.55        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81        31.04        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12        18.64 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
       29.00        25.12        22.55        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       11.05         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        87.98         2.04        42.90 
TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       28.41        28.44         0.99        20.02        18.84        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
       12.66         5.69         4.60        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        26.27        15.35         4.27         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        5.39         1.25        12.36        10.62        41.33        10.16 
TCGA-91-6835 TCGA-91-6836 
        2.60        13.71 

  OR10R2 MUTATED OR10R2 WILD-TYPE 
            9.96             0.07 
  OR10R2 MUTATED OR10R2 WILD-TYPE 
           51.25           120.79 
  OR10R2 MUTATED OR10R2 WILD-TYPE 
          25.020           20.265 
[1] "10.0 - 51.2 (25.0)" "0.1 - 120.8 (20.3)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE"   "OR10R2 MUTATED" "OR10R2 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR10R2 MUTATED"   "OR10R2 MUTATED" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE"   "OR10R2 MUTATED" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE"   "OR10R2 MUTATED" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
  "OR10R2 MUTATED" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE"   "OR10R2 MUTATED" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE"   "OR10R2 MUTATED" "OR10R2 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"OR10R2 WILD-TYPE"   "OR10R2 MUTATED" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE"   "OR10R2 MUTATED" "OR10R2 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR10R2 MUTATED"   "OR10R2 MUTATED" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE"   "OR10R2 MUTATED" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE"   "OR10R2 MUTATED" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
  "OR10R2 MUTATED" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE"   "OR10R2 MUTATED" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE"   "OR10R2 MUTATED" "OR10R2 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"OR10R2 WILD-TYPE"   "OR10R2 MUTATED" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE"   "OR10R2 MUTATED" "OR10R2 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR10R2 MUTATED"   "OR10R2 MUTATED" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE"   "OR10R2 MUTATED" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE"   "OR10R2 MUTATED" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
  "OR10R2 MUTATED" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE"   "OR10R2 MUTATED" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE"   "OR10R2 MUTATED" "OR10R2 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"OR10R2 WILD-TYPE"   "OR10R2 MUTATED" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
[1] "hr=" "1.2"
D66V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  OR10R2 MUTATED          2        3         0         3          1          1
  OR10R2 WILD-TYPE       35       50        11        20         32          5
                  vv
clus               STAGE IV
  OR10R2 MUTATED          0
  OR10R2 WILD-TYPE        9
D66V3, multiclass
                  vv
clus                T1  T2  T3  T4
  OR10R2 MUTATED     3   5   1   1
  OR10R2 WILD-TYPE  38 104  13   7
D66V4, multiclass
    clus
vv   OR10R2 MUTATED OR10R2 WILD-TYPE
  T1              3               38
  T2              5              104
  T3              1               13
  T4              1                7
                  vv
clus               N0 N1 N2+N3
  OR10R2 MUTATED    5  4     1
  OR10R2 WILD-TYPE 90 33    34
D66V5, multiclass
       clus
vv      OR10R2 MUTATED OR10R2 WILD-TYPE
  N0                 5               90
  N1                 4               33
  N2+N3              1               34
                  vv
clus                M0  M1  MX
  OR10R2 MUTATED    10   0   0
  OR10R2 WILD-TYPE 133   9  18
D66V6, multiclass
    clus
vv   OR10R2 MUTATED OR10R2 WILD-TYPE
  M0             10              133
  M1              0                9
  MX              0               18
D66V7, binary
                  cls
clus                0  1
  OR10R2 MUTATED    8  2
  OR10R2 WILD-TYPE 85 77
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10R2 MUTATED      8    2
  OR10R2 WILD-TYPE   85   77
        clus
vv       OR10R2 MUTATED OR10R2 WILD-TYPE
  FEMALE              8               85
  MALE                2               77
D66V8, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR10R2 MUTATED                            0                                 4
  OR10R2 WILD-TYPE                          2                                35
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR10R2 MUTATED                                                    5
  OR10R2 WILD-TYPE                                                110
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR10R2 MUTATED                                            0
  OR10R2 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR10R2 MUTATED                                               0
  OR10R2 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  OR10R2 MUTATED                                0
  OR10R2 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  OR10R2 MUTATED                                    0
  OR10R2 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR10R2 MUTATED                              0                             0
  OR10R2 WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR10R2 MUTATED                                               0
  OR10R2 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  OR10R2 MUTATED                              1
  OR10R2 WILD-TYPE                            1
D66V9, multiclass
D66V10, binary
                  cls
clus                 0   1
  OR10R2 MUTATED     0  10
  OR10R2 WILD-TYPE  14 148
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10R2 MUTATED      0   10
  OR10R2 WILD-TYPE   14  148
     clus
vv    OR10R2 MUTATED OR10R2 WILD-TYPE
  NO               0               14
  YES             10              148
D66V11, continuous
D66V12, continuous
                  vv
clus                R0  R1  R2  RX
  OR10R2 MUTATED     9   0   0   0
  OR10R2 WILD-TYPE 106   6   4   9
D66V13, multiclass
    clus
vv   OR10R2 MUTATED OR10R2 WILD-TYPE
  R0              9              106
  R1              0                6
  R2              0                4
  RX              0                9

Clustering(67) Variable = TLR4 MUTATION ANALYSIS
D67V1, survival
                sevent
clus2             0  1
  TLR4 MUTATED   10 11
  TLR4 WILD-TYPE 89 45
  TLR4 MUTATED TLR4 WILD-TYPE 
            21            134 
  TLR4 MUTATED TLR4 WILD-TYPE 
            11             45 
$`TLR4 MUTATED`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4396 TCGA-05-4398 TCGA-05-4424 TCGA-05-4427 
        3.98        19.92         9.96        47.05        30.02        26.01 
TCGA-05-5428 TCGA-38-4626 TCGA-38-4632 TCGA-44-6147 TCGA-44-6777 TCGA-49-6742 
       22.03       120.79        44.61        27.78        32.45        15.02 
TCGA-50-5049 TCGA-50-5068 TCGA-50-5933 TCGA-50-6590 TCGA-50-6595 TCGA-64-5781 
       70.55        49.28        77.88        42.31         6.21        51.25 
TCGA-73-4659 TCGA-73-4677 TCGA-91-6829 
       23.38         1.25        41.33 

$`TLR4 WILD-TYPE`
TCGA-05-4249 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4397 TCGA-05-4402 
       50.07        14.01        45.01        37.02        24.03         8.02 
TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
       19.00        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       12.00        21.99        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02        15.02         4.96        28.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 
        0.46         7.36         5.95         8.68        97.74        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-44-2655 
       49.02        28.37        35.28        11.64        14.73        21.93 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       46.98        13.15        44.94        24.36        42.08        42.77 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        37.15        38.24        23.51         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
       23.74        13.71        12.59        13.38        10.78         9.93 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 
       11.90         5.42        12.16        63.72        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46         5.16        55.89 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 
       12.13        29.26        17.13        20.48        71.47        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       25.81        31.04         8.05         9.27         8.78        35.87 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12        18.64        29.00        25.12 
TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6597 
       22.55         3.88        25.51        11.05        12.16        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 
       87.98         2.04        42.90        28.41        28.44         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       20.02        18.84        14.04        12.66         5.69         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
       13.87         2.01        52.57        29.95        26.27        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-86-6562 TCGA-91-6828 TCGA-91-6831 
        4.27         1.32         5.39        12.36        10.62        10.16 
TCGA-91-6835 TCGA-91-6836 
        2.60        13.71 

  TLR4 MUTATED TLR4 WILD-TYPE 
          1.25           0.07 
  TLR4 MUTATED TLR4 WILD-TYPE 
        120.79          97.74 
  TLR4 MUTATED TLR4 WILD-TYPE 
         30.02          18.92 
[1] "1.2 - 120.8 (30.0)" "0.1 - 97.7 (18.9)" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"TLR4 WILD-TYPE"   "TLR4 MUTATED"   "TLR4 MUTATED" "TLR4 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
  "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
  "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
  "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
  "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
  "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"TLR4 WILD-TYPE"   "TLR4 MUTATED"   "TLR4 MUTATED" "TLR4 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
  "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
  "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
  "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
  "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
  "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"TLR4 WILD-TYPE"   "TLR4 MUTATED"   "TLR4 MUTATED" "TLR4 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
  "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
  "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
  "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
  "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"TLR4 WILD-TYPE"   "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
  "TLR4 MUTATED" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE"   "TLR4 MUTATED" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
[1] "hr=" "1.1"
D67V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  TLR4 MUTATED          3        6         2         5          3          3
  TLR4 WILD-TYPE       34       47         9        18         30          3
                vv
clus             STAGE IV
  TLR4 MUTATED          1
  TLR4 WILD-TYPE        8
D67V3, multiclass
                vv
clus             T1 T2 T3 T4
  TLR4 MUTATED    2 15  3  3
  TLR4 WILD-TYPE 39 94 11  5
D67V4, multiclass
    clus
vv   TLR4 MUTATED TLR4 WILD-TYPE
  T1            2             39
  T2           15             94
  T3            3             11
  T4            3              5
                vv
clus             N0 N1 N2+N3
  TLR4 MUTATED   10  7     4
  TLR4 WILD-TYPE 85 30    31
D67V5, multiclass
       clus
vv      TLR4 MUTATED TLR4 WILD-TYPE
  N0              10             85
  N1               7             30
  N2+N3            4             31
                vv
clus              M0  M1  MX
  TLR4 MUTATED    18   1   4
  TLR4 WILD-TYPE 125   8  14
D67V6, multiclass
    clus
vv   TLR4 MUTATED TLR4 WILD-TYPE
  M0           18            125
  M1            1              8
  MX            4             14
D67V7, binary
                cls
clus              0  1
  TLR4 MUTATED   12 11
  TLR4 WILD-TYPE 81 68
[1] "tbl2"
                cls
clus             [,1] [,2]
  TLR4 MUTATED     12   11
  TLR4 WILD-TYPE   81   68
        clus
vv       TLR4 MUTATED TLR4 WILD-TYPE
  FEMALE           12             81
  MALE             11             68
D67V8, continuous
[1] "Remove cluster labels:" "TLR4 MUTATED"          
clus
  TLR4 MUTATED TLR4 WILD-TYPE 
             1             11 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-64-1677 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-64-5778     TCGA-71-6725     TCGA-73-4662     TCGA-73-4666 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4676     TCGA-75-5122 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  TLR4 MUTATED                            0                                 7
  TLR4 WILD-TYPE                          2                                32
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  TLR4 MUTATED                                                   14
  TLR4 WILD-TYPE                                                101
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  TLR4 MUTATED                                            0
  TLR4 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  TLR4 MUTATED                                               1
  TLR4 WILD-TYPE                                             1
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  TLR4 MUTATED                                0
  TLR4 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  TLR4 MUTATED                                    0
  TLR4 WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  TLR4 MUTATED                              0                             0
  TLR4 WILD-TYPE                            2                             4
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  TLR4 MUTATED                                               0
  TLR4 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  TLR4 MUTATED                              1
  TLR4 WILD-TYPE                            1
D67V9, multiclass
D67V10, binary
                cls
clus               0   1
  TLR4 MUTATED     3  20
  TLR4 WILD-TYPE  11 138
[1] "tbl2"
                cls
clus             [,1] [,2]
  TLR4 MUTATED      3   20
  TLR4 WILD-TYPE   11  138
     clus
vv    TLR4 MUTATED TLR4 WILD-TYPE
  NO             3             11
  YES           20            138
D67V11, continuous
D67V12, continuous
                vv
clus              R0  R1  R2  RX
  TLR4 MUTATED    14   1   1   0
  TLR4 WILD-TYPE 101   5   3   9
D67V13, multiclass
    clus
vv   TLR4 MUTATED TLR4 WILD-TYPE
  R0           14            101
  R1            1              5
  R2            1              3
  RX            0              9

Clustering(68) Variable = OR6F1 MUTATION ANALYSIS
D68V1, survival
                 sevent
clus2              0  1
  OR6F1 MUTATED    5  4
  OR6F1 WILD-TYPE 94 52
  OR6F1 MUTATED OR6F1 WILD-TYPE 
              9             146 
  OR6F1 MUTATED OR6F1 WILD-TYPE 
              4              52 
$`OR6F1 MUTATED`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4405 TCGA-38-4632 TCGA-44-2655 TCGA-44-2661 
        3.98        19.92        20.05        44.61        21.93        24.36 
TCGA-44-2668 TCGA-44-3918 TCGA-73-4677 
        8.09        23.51         1.25 

$`OR6F1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       50.07        14.01        45.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        19.00         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
       29.95        12.00        30.02        21.99        26.01        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02        15.02         4.96 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
       28.96        22.03         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        97.74       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-44-2656 TCGA-44-2657 
       28.37        35.28        11.64        14.73        46.98        13.15 
TCGA-44-2659 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 
       44.94        42.08        42.77         3.19        37.15        38.24 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21        23.74        13.71        12.59        13.38        10.78 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93        27.78        11.90         5.42        12.16        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46         5.16        55.89        15.02        12.13        29.26 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
       17.13        20.48        71.47        70.55        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       31.04        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12        18.64        29.00 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       25.12        22.55        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        87.98         2.04        42.90 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       28.41        51.25        28.44         0.99        20.02        18.84 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
       14.04        12.66         5.69         4.60        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        26.27        15.35         4.27 
TCGA-73-4675 TCGA-73-4676 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         5.39        12.36        10.62        41.33        10.16 
TCGA-91-6835 TCGA-91-6836 
        2.60        13.71 

  OR6F1 MUTATED OR6F1 WILD-TYPE 
           1.25            0.07 
  OR6F1 MUTATED OR6F1 WILD-TYPE 
          44.61          120.79 
  OR6F1 MUTATED OR6F1 WILD-TYPE 
          20.05           21.06 
[1] "1.2 - 44.6 (20.1)"  "0.1 - 120.8 (21.1)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR6F1 WILD-TYPE"   "OR6F1 MUTATED"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
  "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
  "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
  "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
  "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR6F1 WILD-TYPE"   "OR6F1 MUTATED"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
  "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
  "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
  "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
  "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR6F1 WILD-TYPE"   "OR6F1 MUTATED"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
  "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
  "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
  "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
  "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
[1] "hr=" "1.9"
D68V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  OR6F1 MUTATED          4        4         0         0          1          0
  OR6F1 WILD-TYPE       33       49        11        23         32          6
                 vv
clus              STAGE IV
  OR6F1 MUTATED          1
  OR6F1 WILD-TYPE        8
D68V3, multiclass
                 vv
clus               T1  T2  T3  T4
  OR6F1 MUTATED     3   5   2   0
  OR6F1 WILD-TYPE  38 104  12   8
D68V4, multiclass
    clus
vv   OR6F1 MUTATED OR6F1 WILD-TYPE
  T1             3              38
  T2             5             104
  T3             2              12
  T4             0               8
                 vv
clus              N0 N1 N2+N3
  OR6F1 MUTATED    8  2     0
  OR6F1 WILD-TYPE 87 35    35
D68V5, multiclass
       clus
vv      OR6F1 MUTATED OR6F1 WILD-TYPE
  N0                8              87
  N1                2              35
  N2+N3             0              35
                 vv
clus               M0  M1  MX
  OR6F1 MUTATED     9   1   0
  OR6F1 WILD-TYPE 134   8  18
D68V6, multiclass
    clus
vv   OR6F1 MUTATED OR6F1 WILD-TYPE
  M0             9             134
  M1             1               8
  MX             0              18
D68V7, binary
                 cls
clus               0  1
  OR6F1 MUTATED    5  5
  OR6F1 WILD-TYPE 88 74
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6F1 MUTATED      5    5
  OR6F1 WILD-TYPE   88   74
        clus
vv       OR6F1 MUTATED OR6F1 WILD-TYPE
  FEMALE             5              88
  MALE               5              74
D68V8, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR6F1 MUTATED                            0                                 2
  OR6F1 WILD-TYPE                          2                                37
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR6F1 MUTATED                                                    8
  OR6F1 WILD-TYPE                                                107
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR6F1 MUTATED                                            0
  OR6F1 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR6F1 MUTATED                                               0
  OR6F1 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  OR6F1 MUTATED                                0
  OR6F1 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  OR6F1 MUTATED                                    0
  OR6F1 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR6F1 MUTATED                              0                             0
  OR6F1 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR6F1 MUTATED                                               0
  OR6F1 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  OR6F1 MUTATED                              0
  OR6F1 WILD-TYPE                            2
D68V9, multiclass
D68V10, binary
                 cls
clus                0   1
  OR6F1 MUTATED     0  10
  OR6F1 WILD-TYPE  14 148
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6F1 MUTATED      0   10
  OR6F1 WILD-TYPE   14  148
     clus
vv    OR6F1 MUTATED OR6F1 WILD-TYPE
  NO              0              14
  YES            10             148
D68V11, continuous
D68V12, continuous
                 vv
clus               R0  R1  R2  RX
  OR6F1 MUTATED     9   0   1   0
  OR6F1 WILD-TYPE 106   6   3   9
D68V13, multiclass
    clus
vv   OR6F1 MUTATED OR6F1 WILD-TYPE
  R0             9             106
  R1             0               6
  R2             1               3
  RX             0               9

Clustering(69) Variable = THEMIS MUTATION ANALYSIS
D69V1, survival
                  sevent
clus2               0  1
  THEMIS MUTATED    3  5
  THEMIS WILD-TYPE 96 51
  THEMIS MUTATED THEMIS WILD-TYPE 
               8              147 
  THEMIS MUTATED THEMIS WILD-TYPE 
               5               51 
$`THEMIS MUTATED`
TCGA-05-4396 TCGA-05-4418 TCGA-35-4123 TCGA-44-4112 TCGA-49-4501 TCGA-55-1592 
        9.96         8.98         5.95        23.74        46.72        23.05 
TCGA-67-3772 TCGA-73-4670 
       18.84         4.27 

$`THEMIS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
       14.93        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        4.96        28.96        22.03         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        7.36         8.68        97.74       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61        14.73        21.93 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       46.98        13.15        44.94        24.36        42.08        42.77 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        37.15        38.24        23.51         6.21 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       13.71        12.59        13.38        10.78         9.93        27.78 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
       11.90         5.42        12.16        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46         5.16        55.89 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        29.26        17.13        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       70.55        14.96        25.81        31.04        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12        18.64        29.00        25.12        22.55        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        87.98 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        2.04        42.90        28.41        51.25        28.44         0.99 
TCGA-67-3771 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
       20.02        14.04        12.66         5.69         4.60        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        26.27        15.35 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 
        1.32         5.39         1.25        12.36        10.62        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       10.16         2.60        13.71 

  THEMIS MUTATED THEMIS WILD-TYPE 
            4.27             0.07 
  THEMIS MUTATED THEMIS WILD-TYPE 
           46.72           120.79 
  THEMIS MUTATED THEMIS WILD-TYPE 
           14.40            21.47 
[1] "4.3 - 46.7 (14.4)"  "0.1 - 120.8 (21.5)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE"   "THEMIS MUTATED" "THEMIS WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE"   "THEMIS MUTATED" "THEMIS WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"THEMIS WILD-TYPE"   "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"THEMIS WILD-TYPE"   "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"THEMIS WILD-TYPE"   "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"THEMIS WILD-TYPE"   "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"THEMIS WILD-TYPE"   "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE"   "THEMIS MUTATED" "THEMIS WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE"   "THEMIS MUTATED" "THEMIS WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"THEMIS WILD-TYPE"   "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"THEMIS WILD-TYPE"   "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"THEMIS WILD-TYPE"   "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"THEMIS WILD-TYPE"   "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"THEMIS WILD-TYPE"   "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE"   "THEMIS MUTATED" "THEMIS WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE"   "THEMIS MUTATED" "THEMIS WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"THEMIS WILD-TYPE"   "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"THEMIS WILD-TYPE"   "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
  "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"THEMIS WILD-TYPE"   "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"THEMIS WILD-TYPE"   "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"THEMIS WILD-TYPE"   "THEMIS MUTATED" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
[1] "hr=" "2.7"
D69V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  THEMIS MUTATED          2        5         0         0          1          1
  THEMIS WILD-TYPE       35       48        11        23         32          5
                  vv
clus               STAGE IV
  THEMIS MUTATED          1
  THEMIS WILD-TYPE        8
D69V3, multiclass
                  vv
clus                T1  T2  T3  T4
  THEMIS MUTATED     1   7   1   1
  THEMIS WILD-TYPE  40 102  13   7
D69V4, multiclass
    clus
vv   THEMIS MUTATED THEMIS WILD-TYPE
  T1              1               40
  T2              7              102
  T3              1               13
  T4              1                7
                  vv
clus               N0 N1 N2+N3
  THEMIS MUTATED    8  1     1
  THEMIS WILD-TYPE 87 36    34
D69V5, multiclass
       clus
vv      THEMIS MUTATED THEMIS WILD-TYPE
  N0                 8               87
  N1                 1               36
  N2+N3              1               34
                  vv
clus                M0  M1  MX
  THEMIS MUTATED     9   1   0
  THEMIS WILD-TYPE 134   8  18
D69V6, multiclass
    clus
vv   THEMIS MUTATED THEMIS WILD-TYPE
  M0              9              134
  M1              1                8
  MX              0               18
D69V7, binary
                  cls
clus                0  1
  THEMIS MUTATED    4  6
  THEMIS WILD-TYPE 89 73
[1] "tbl2"
                  cls
clus               [,1] [,2]
  THEMIS MUTATED      4    6
  THEMIS WILD-TYPE   89   73
        clus
vv       THEMIS MUTATED THEMIS WILD-TYPE
  FEMALE              4               89
  MALE                6               73
D69V8, continuous
[1] "Remove cluster labels:" "THEMIS MUTATED"        
clus
  THEMIS MUTATED THEMIS WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-5375       TCGA-64-1677       TCGA-64-5778 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"THEMIS WILD-TYPE" "THEMIS WILD-TYPE" "THEMIS WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  THEMIS MUTATED                            0                                 3
  THEMIS WILD-TYPE                          2                                36
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  THEMIS MUTATED                                                    7
  THEMIS WILD-TYPE                                                108
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  THEMIS MUTATED                                            0
  THEMIS WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  THEMIS MUTATED                                               0
  THEMIS WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  THEMIS MUTATED                                0
  THEMIS WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  THEMIS MUTATED                                    0
  THEMIS WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  THEMIS MUTATED                              0                             0
  THEMIS WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  THEMIS MUTATED                                               0
  THEMIS WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  THEMIS MUTATED                              0
  THEMIS WILD-TYPE                            2
D69V9, multiclass
D69V10, binary
                  cls
clus                 0   1
  THEMIS MUTATED     0  10
  THEMIS WILD-TYPE  14 148
[1] "tbl2"
                  cls
clus               [,1] [,2]
  THEMIS MUTATED      0   10
  THEMIS WILD-TYPE   14  148
     clus
vv    THEMIS MUTATED THEMIS WILD-TYPE
  NO               0               14
  YES             10              148
D69V11, continuous
D69V12, continuous
                  vv
clus                R0  R1  R2  RX
  THEMIS MUTATED     8   0   0   1
  THEMIS WILD-TYPE 107   6   4   8
D69V13, multiclass
    clus
vv   THEMIS MUTATED THEMIS WILD-TYPE
  R0              8              107
  R1              0                6
  R2              0                4
  RX              1                8

Clustering(70) Variable = DACT1 MUTATION ANALYSIS
D70V1, survival
                 sevent
clus2              0  1
  DACT1 MUTATED    9  1
  DACT1 WILD-TYPE 90 55
  DACT1 MUTATED DACT1 WILD-TYPE 
             10             145 
  DACT1 MUTATED DACT1 WILD-TYPE 
              1              55 
$`DACT1 MUTATED`
TCGA-05-4427 TCGA-05-5428 TCGA-44-2657 TCGA-49-6742 TCGA-50-5045 TCGA-50-5066 
       26.01        22.03        13.15        15.02        71.47        31.04 
TCGA-55-1596 TCGA-67-3771 TCGA-73-4676 TCGA-91-6836 
       45.17        20.02         5.39        13.71 

$`DACT1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       21.99        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
       15.02         4.96        28.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61        14.73 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       21.93        46.98        44.94        24.36        42.08        42.77 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        37.15        38.24        23.51         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
       23.74        13.71        12.59        13.38        10.78         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
       27.78        11.90         5.42        12.16        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
        5.16        55.89        12.13        29.26        17.13        20.48 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       70.55        14.96        25.81        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
       18.64        29.00        25.12        22.55        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       38.73        48.62         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        87.98         2.04 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 
       42.90        28.41        51.25        28.44         0.99        18.84 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
       14.04        12.66         5.69         4.60        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        26.27        15.35         4.27 
TCGA-73-4675 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         1.25        12.36        10.62        41.33        10.16 
TCGA-91-6835 
        2.60 

  DACT1 MUTATED DACT1 WILD-TYPE 
           5.39            0.07 
  DACT1 MUTATED DACT1 WILD-TYPE 
          71.47          120.79 
  DACT1 MUTATED DACT1 WILD-TYPE 
         21.025          20.650 
[1] "5.4 - 71.5 (21.0)"  "0.1 - 120.8 (20.6)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "DACT1 MUTATED" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
  "DACT1 MUTATED" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE"   "DACT1 MUTATED" "DACT1 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE"   "DACT1 MUTATED" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
  "DACT1 MUTATED" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
  "DACT1 MUTATED" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
  "DACT1 MUTATED" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "DACT1 MUTATED" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE"   "DACT1 MUTATED" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE"   "DACT1 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "DACT1 MUTATED" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
  "DACT1 MUTATED" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE"   "DACT1 MUTATED" "DACT1 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE"   "DACT1 MUTATED" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
  "DACT1 MUTATED" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
  "DACT1 MUTATED" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
  "DACT1 MUTATED" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "DACT1 MUTATED" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE"   "DACT1 MUTATED" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE"   "DACT1 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "DACT1 MUTATED" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
  "DACT1 MUTATED" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE"   "DACT1 MUTATED" "DACT1 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE"   "DACT1 MUTATED" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
  "DACT1 MUTATED" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
  "DACT1 MUTATED" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
  "DACT1 MUTATED" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "DACT1 MUTATED" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE"   "DACT1 MUTATED" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE"   "DACT1 MUTATED" 
[1] "hr=" "4"  
D70V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  DACT1 MUTATED          2        3         2         3          0          0
  DACT1 WILD-TYPE       35       50         9        20         33          6
                 vv
clus              STAGE IV
  DACT1 MUTATED          0
  DACT1 WILD-TYPE        9
D70V3, multiclass
                 vv
clus               T1  T2  T3  T4
  DACT1 MUTATED     2   8   0   0
  DACT1 WILD-TYPE  39 101  14   8
D70V4, multiclass
    clus
vv   DACT1 MUTATED DACT1 WILD-TYPE
  T1             2              39
  T2             8             101
  T3             0              14
  T4             0               8
                 vv
clus              N0 N1 N2+N3
  DACT1 MUTATED    3  6     0
  DACT1 WILD-TYPE 92 31    35
D70V5, multiclass
       clus
vv      DACT1 MUTATED DACT1 WILD-TYPE
  N0                3              92
  N1                6              31
  N2+N3             0              35
                 vv
clus               M0  M1  MX
  DACT1 MUTATED     9   0   1
  DACT1 WILD-TYPE 134   9  17
D70V6, multiclass
    clus
vv   DACT1 MUTATED DACT1 WILD-TYPE
  M0             9             134
  M1             0               9
  MX             1              17
D70V7, binary
                 cls
clus               0  1
  DACT1 MUTATED    5  5
  DACT1 WILD-TYPE 88 74
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DACT1 MUTATED      5    5
  DACT1 WILD-TYPE   88   74
        clus
vv       DACT1 MUTATED DACT1 WILD-TYPE
  FEMALE             5              88
  MALE               5              74
D70V8, continuous
[1] "Remove cluster labels:" "DACT1 MUTATED"         
clus
  DACT1 MUTATED DACT1 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4668      TCGA-75-5122 
"DACT1 WILD-TYPE" "DACT1 WILD-TYPE" "DACT1 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  DACT1 MUTATED                            0                                 3
  DACT1 WILD-TYPE                          2                                36
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  DACT1 MUTATED                                                    6
  DACT1 WILD-TYPE                                                109
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  DACT1 MUTATED                                            0
  DACT1 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  DACT1 MUTATED                                               0
  DACT1 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  DACT1 MUTATED                                0
  DACT1 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  DACT1 MUTATED                                    0
  DACT1 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  DACT1 MUTATED                              0                             0
  DACT1 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  DACT1 MUTATED                                               0
  DACT1 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  DACT1 MUTATED                              1
  DACT1 WILD-TYPE                            1
D70V9, multiclass
D70V10, binary
                 cls
clus                0   1
  DACT1 MUTATED     2   8
  DACT1 WILD-TYPE  12 150
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DACT1 MUTATED      2    8
  DACT1 WILD-TYPE   12  150
     clus
vv    DACT1 MUTATED DACT1 WILD-TYPE
  NO              2              12
  YES             8             150
D70V11, continuous
D70V12, continuous
                 vv
clus               R0  R1  R2  RX
  DACT1 MUTATED     8   0   0   0
  DACT1 WILD-TYPE 107   6   4   9
D70V13, multiclass
    clus
vv   DACT1 MUTATED DACT1 WILD-TYPE
  R0             8             107
  R1             0               6
  R2             0               4
  RX             0               9

Clustering(71) Variable = APC MUTATION ANALYSIS
D71V1, survival
               sevent
clus2            0  1
  APC MUTATED    4  6
  APC WILD-TYPE 95 50
  APC MUTATED APC WILD-TYPE 
           10           145 
  APC MUTATED APC WILD-TYPE 
            6            50 
$`APC MUTATED`
TCGA-05-4382 TCGA-05-4397 TCGA-05-4402 TCGA-38-4631 TCGA-49-4507 TCGA-50-5049 
       19.92        24.03         8.02        11.64         8.81        70.55 
TCGA-50-6591 TCGA-55-5899 TCGA-73-4659 TCGA-91-6836 
        3.88         2.86        23.38        13.71 

$`APC WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 
       50.07         3.98        14.01        45.01        37.02         9.96 
TCGA-05-4398 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05        19.00        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
       29.95        12.00        30.02        21.99        26.01        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02        15.02         4.96 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
       28.96        22.03         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        97.74       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       28.37        35.28        44.61        14.73        21.93        46.98 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        44.94        24.36        42.08        42.77         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        37.15        38.24        23.51         6.21        23.74 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       13.71        12.59        13.38        10.78         9.93        27.78 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
       11.90         5.42        12.16        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       46.72        14.07        32.84        29.46         5.16        55.89 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        29.26        17.13        20.48        71.47 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81        31.04        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 
       18.64        29.00        25.12        22.55        42.31        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       48.62        45.17         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        87.98         2.04        42.90 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       28.41        51.25        28.44         0.99        20.02        18.84 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
       14.04        12.66         5.69         4.60        13.87         2.01 
TCGA-73-4658 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       52.57        29.95        26.27        15.35         4.27         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        5.39         1.25        12.36        10.62        41.33        10.16 
TCGA-91-6835 
        2.60 

  APC MUTATED APC WILD-TYPE 
         2.86          0.07 
  APC MUTATED APC WILD-TYPE 
        70.55        120.79 
  APC MUTATED APC WILD-TYPE 
       12.675        21.930 
[1] "2.9 - 70.5 (12.7)"  "0.1 - 120.8 (21.9)"
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428    TCGA-05-5429 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-86-6562 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-91-6828    TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428    TCGA-05-5429 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-86-6562 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-91-6828    TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428    TCGA-05-5429 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-86-6562 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-91-6828    TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
[1] "hr=" "2.7"
D71V2, continuous
               vv
clus            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  APC MUTATED          2        3         0         1          2          0
  APC WILD-TYPE       35       50        11        22         31          6
               vv
clus            STAGE IV
  APC MUTATED          2
  APC WILD-TYPE        7
D71V3, multiclass
               vv
clus             T1  T2  T3  T4
  APC MUTATED     1   8   1   0
  APC WILD-TYPE  40 101  13   8
D71V4, multiclass
    clus
vv   APC MUTATED APC WILD-TYPE
  T1           1            40
  T2           8           101
  T3           1            13
  T4           0             8
               vv
clus            N0 N1 N2+N3
  APC MUTATED    5  3     1
  APC WILD-TYPE 90 34    34
D71V5, multiclass
       clus
vv      APC MUTATED APC WILD-TYPE
  N0              5            90
  N1              3            34
  N2+N3           1            34
               vv
clus             M0  M1  MX
  APC MUTATED     7   2   1
  APC WILD-TYPE 136   7  17
D71V6, multiclass
    clus
vv   APC MUTATED APC WILD-TYPE
  M0           7           136
  M1           2             7
  MX           1            17
D71V7, binary
               cls
clus             0  1
  APC MUTATED    5  5
  APC WILD-TYPE 88 74
[1] "tbl2"
               cls
clus            [,1] [,2]
  APC MUTATED      5    5
  APC WILD-TYPE   88   74
        clus
vv       APC MUTATED APC WILD-TYPE
  FEMALE           5            88
  MALE             5            74
D71V8, continuous
[1] "Remove cluster labels:" "APC MUTATED"           
clus
  APC MUTATED APC WILD-TYPE 
            1            11 
   TCGA-35-4122    TCGA-35-4123    TCGA-35-5375    TCGA-64-1677    TCGA-64-5778 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-71-6725    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668    TCGA-73-4676 
"APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-75-5122 
"APC WILD-TYPE" 
               vv
clus            LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  APC MUTATED                            0                                 3
  APC WILD-TYPE                          2                                36
               vv
clus            LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  APC MUTATED                                                    7
  APC WILD-TYPE                                                108
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  APC MUTATED                                            0
  APC WILD-TYPE                                          1
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  APC MUTATED                                               0
  APC WILD-TYPE                                             2
               vv
clus            LUNG CLEAR CELL ADENOCARCINOMA
  APC MUTATED                                0
  APC WILD-TYPE                              2
               vv
clus            LUNG MICROPAPILLARY ADENOCARCINOMA LUNG MUCINOUS ADENOCARCINOMA
  APC MUTATED                                    0                            0
  APC WILD-TYPE                                  2                            2
               vv
clus            LUNG PAPILLARY ADENOCARCINOMA
  APC MUTATED                               0
  APC WILD-TYPE                             4
               vv
clus            LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  APC MUTATED                                               0
  APC WILD-TYPE                                             1
               vv
clus            MUCINOUS (COLLOID) CARCINOMA
  APC MUTATED                              0
  APC WILD-TYPE                            2
D71V9, multiclass
D71V10, binary
               cls
clus              0   1
  APC MUTATED     2   8
  APC WILD-TYPE  12 150
[1] "tbl2"
               cls
clus            [,1] [,2]
  APC MUTATED      2    8
  APC WILD-TYPE   12  150
     clus
vv    APC MUTATED APC WILD-TYPE
  NO            2            12
  YES           8           150
D71V11, continuous
D71V12, continuous
               vv
clus             R0  R1  R2  RX
  APC MUTATED     6   0   1   0
  APC WILD-TYPE 109   6   3   9
D71V13, multiclass
    clus
vv   APC MUTATED APC WILD-TYPE
  R0           6           109
  R1           0             6
  R2           1             3
  RX           0             9

Clustering(72) Variable = SCG2 MUTATION ANALYSIS
D72V1, survival
                sevent
clus2             0  1
  SCG2 MUTATED    4  4
  SCG2 WILD-TYPE 95 52
  SCG2 MUTATED SCG2 WILD-TYPE 
             8            147 
  SCG2 MUTATED SCG2 WILD-TYPE 
             4             52 
$`SCG2 MUTATED`
TCGA-05-4396 TCGA-05-4432 TCGA-44-2656 TCGA-49-4510 TCGA-50-6592 TCGA-64-5779 
        9.96        25.02        46.98        29.46        25.51        28.41 
TCGA-73-4676 TCGA-91-6829 
        5.39        41.33 

$`SCG2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        26.01        25.02        24.00        15.02        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        4.96        28.96        22.03         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61        14.73 
TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       21.93        13.15        44.94        24.36        42.08        42.77 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        37.15        38.24        23.51         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
       23.74        13.71        12.59        13.38        10.78         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
       27.78        11.90         5.42        12.16        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4512 
       35.54        46.72        14.07        32.84         8.81         5.16 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       55.89        15.02        12.13        29.26        17.13        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        70.55        14.96        25.81        31.04        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12        18.64        29.00        25.12        22.55 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
       42.31         3.88        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
       87.98         2.04        42.90        51.25        28.44         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       20.02        18.84        14.04        12.66         5.69         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        26.27 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 
       15.35         4.27         1.32         1.25        12.36        10.62 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       10.16         2.60        13.71 

  SCG2 MUTATED SCG2 WILD-TYPE 
          5.39           0.07 
  SCG2 MUTATED SCG2 WILD-TYPE 
         46.98         120.79 
  SCG2 MUTATED SCG2 WILD-TYPE 
         26.96          20.05 
[1] "5.4 - 47.0 (27.0)"  "0.1 - 120.8 (20.1)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE"   "SCG2 MUTATED" "SCG2 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE"   "SCG2 MUTATED" "SCG2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"SCG2 WILD-TYPE"   "SCG2 MUTATED" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
  "SCG2 MUTATED" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
  "SCG2 MUTATED" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
  "SCG2 MUTATED" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE"   "SCG2 MUTATED" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE"   "SCG2 MUTATED" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE"   "SCG2 MUTATED" "SCG2 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE"   "SCG2 MUTATED" "SCG2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"SCG2 WILD-TYPE"   "SCG2 MUTATED" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
  "SCG2 MUTATED" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
  "SCG2 MUTATED" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
  "SCG2 MUTATED" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE"   "SCG2 MUTATED" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE"   "SCG2 MUTATED" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE"   "SCG2 MUTATED" "SCG2 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE"   "SCG2 MUTATED" "SCG2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"SCG2 WILD-TYPE"   "SCG2 MUTATED" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
  "SCG2 MUTATED" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
  "SCG2 MUTATED" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
  "SCG2 MUTATED" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE"   "SCG2 MUTATED" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE"   "SCG2 MUTATED" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
[1] "hr=" "1.3"
D72V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  SCG2 MUTATED          0        3         1         2          1          1
  SCG2 WILD-TYPE       37       50        10        21         32          5
                vv
clus             STAGE IV
  SCG2 MUTATED          0
  SCG2 WILD-TYPE        9
D72V3, multiclass
                vv
clus              T1  T2  T3  T4
  SCG2 MUTATED     0   7   0   1
  SCG2 WILD-TYPE  41 102  14   7
D72V4, multiclass
    clus
vv   SCG2 MUTATED SCG2 WILD-TYPE
  T1            0             41
  T2            7            102
  T3            0             14
  T4            1              7
                vv
clus             N0 N1 N2+N3
  SCG2 MUTATED    3  4     1
  SCG2 WILD-TYPE 92 33    34
D72V5, multiclass
       clus
vv      SCG2 MUTATED SCG2 WILD-TYPE
  N0               3             92
  N1               4             33
  N2+N3            1             34
                vv
clus              M0  M1  MX
  SCG2 MUTATED     7   0   1
  SCG2 WILD-TYPE 136   9  17
D72V6, multiclass
    clus
vv   SCG2 MUTATED SCG2 WILD-TYPE
  M0            7            136
  M1            0              9
  MX            1             17
D72V7, binary
                cls
clus              0  1
  SCG2 MUTATED    2  6
  SCG2 WILD-TYPE 91 73
[1] "tbl2"
                cls
clus             [,1] [,2]
  SCG2 MUTATED      2    6
  SCG2 WILD-TYPE   91   73
        clus
vv       SCG2 MUTATED SCG2 WILD-TYPE
  FEMALE            2             91
  MALE              6             73
D72V8, continuous
[1] "Remove cluster labels:" "SCG2 MUTATED"          
clus
  SCG2 MUTATED SCG2 WILD-TYPE 
             1             11 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-64-1677 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-64-5778     TCGA-71-6725     TCGA-73-4659     TCGA-73-4662 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-73-4666     TCGA-73-4668     TCGA-75-5122 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  SCG2 MUTATED                            1                                 2
  SCG2 WILD-TYPE                          1                                37
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SCG2 MUTATED                                                    4
  SCG2 WILD-TYPE                                                111
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  SCG2 MUTATED                                            0
  SCG2 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  SCG2 MUTATED                                               1
  SCG2 WILD-TYPE                                             1
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  SCG2 MUTATED                                0
  SCG2 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  SCG2 MUTATED                                    0
  SCG2 WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  SCG2 MUTATED                              0                             0
  SCG2 WILD-TYPE                            2                             4
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  SCG2 MUTATED                                               0
  SCG2 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  SCG2 MUTATED                              0
  SCG2 WILD-TYPE                            2
D72V9, multiclass
D72V10, binary
                cls
clus               0   1
  SCG2 MUTATED     2   6
  SCG2 WILD-TYPE  12 152
[1] "tbl2"
                cls
clus             [,1] [,2]
  SCG2 MUTATED      2    6
  SCG2 WILD-TYPE   12  152
     clus
vv    SCG2 MUTATED SCG2 WILD-TYPE
  NO             2             12
  YES            6            152
D72V11, continuous
D72V12, continuous
                vv
clus              R0  R1  R2  RX
  SCG2 MUTATED     6   0   0   0
  SCG2 WILD-TYPE 109   6   4   9
D72V13, multiclass
    clus
vv   SCG2 MUTATED SCG2 WILD-TYPE
  R0            6            109
  R1            0              6
  R2            0              4
  RX            0              9

Clustering(73) Variable = BRE MUTATION ANALYSIS
D73V1, survival
               sevent
clus2            0  1
  BRE MUTATED    2  2
  BRE WILD-TYPE 97 54
  BRE MUTATED BRE WILD-TYPE 
            4           151 
  BRE MUTATED BRE WILD-TYPE 
            2            54 
$`BRE MUTATED`
TCGA-05-4396 TCGA-44-2656 TCGA-44-2659 TCGA-64-5775 
        9.96        46.98        44.94         2.04 

$`BRE WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 
       15.02         4.96        28.96        22.03         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        97.74       120.79 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       14.73        21.93        13.15        24.36        42.08        42.77 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        37.15        38.24        23.51         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
       23.74        13.71        12.59        13.38        10.78         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
       27.78        11.90         5.42        12.16        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
        5.16        55.89        15.02        12.13        29.26        17.13 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        70.55        14.96        25.81        31.04 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12        18.64        29.00        25.12 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       22.55        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       39.09        37.02        87.98        42.90        28.41        51.25 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       28.44         0.99        20.02        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        5.69         4.60        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        26.27        15.35         4.27         1.32         5.39 
TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.25        12.36        10.62        41.33        10.16         2.60 
TCGA-91-6836 
       13.71 

  BRE MUTATED BRE WILD-TYPE 
         2.04          0.07 
  BRE MUTATED BRE WILD-TYPE 
        46.98        120.79 
  BRE MUTATED BRE WILD-TYPE 
        27.45         20.65 
[1] "2.0 - 47.0 (27.4)"  "0.1 - 120.8 (20.6)"
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"BRE WILD-TYPE"   "BRE MUTATED" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428    TCGA-05-5429 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
  "BRE MUTATED" "BRE WILD-TYPE"   "BRE MUTATED" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"BRE WILD-TYPE"   "BRE MUTATED" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-86-6562 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-91-6828    TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"BRE WILD-TYPE"   "BRE MUTATED" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428    TCGA-05-5429 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
  "BRE MUTATED" "BRE WILD-TYPE"   "BRE MUTATED" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"BRE WILD-TYPE"   "BRE MUTATED" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-86-6562 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-91-6828    TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"BRE WILD-TYPE"   "BRE MUTATED" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428    TCGA-05-5429 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
  "BRE MUTATED" "BRE WILD-TYPE"   "BRE MUTATED" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"BRE WILD-TYPE"   "BRE MUTATED" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-86-6562 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-91-6828    TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
[1] "hr=" "1.3"
D73V2, continuous
               vv
clus            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  BRE MUTATED          0        1         0         1          1          1
  BRE WILD-TYPE       37       52        11        22         32          5
               vv
clus            STAGE IV
  BRE MUTATED          0
  BRE WILD-TYPE        9
D73V3, multiclass
               vv
clus             T1  T2  T3  T4
  BRE MUTATED     1   1   0   2
  BRE WILD-TYPE  40 108  14   6
D73V4, multiclass
    clus
vv   BRE MUTATED BRE WILD-TYPE
  T1           1            40
  T2           1           108
  T3           0            14
  T4           2             6
               vv
clus            N0 N1 N2+N3
  BRE MUTATED    2  2     0
  BRE WILD-TYPE 93 35    35
D73V5, multiclass
       clus
vv      BRE MUTATED BRE WILD-TYPE
  N0              2            93
  N1              2            35
  N2+N3           0            35
               vv
clus             M0  M1  MX
  BRE MUTATED     4   0   0
  BRE WILD-TYPE 139   9  18
D73V6, multiclass
    clus
vv   BRE MUTATED BRE WILD-TYPE
  M0           4           139
  M1           0             9
  MX           0            18
D73V7, binary
               cls
clus             0  1
  BRE MUTATED    1  3
  BRE WILD-TYPE 92 76
[1] "tbl2"
               cls
clus            [,1] [,2]
  BRE MUTATED      1    3
  BRE WILD-TYPE   92   76
        clus
vv       BRE MUTATED BRE WILD-TYPE
  FEMALE           1            92
  MALE             3            76
D73V8, continuous
               vv
clus            LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  BRE MUTATED                            0                                 1
  BRE WILD-TYPE                          2                                38
               vv
clus            LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  BRE MUTATED                                                    3
  BRE WILD-TYPE                                                112
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  BRE MUTATED                                            0
  BRE WILD-TYPE                                          1
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  BRE MUTATED                                               0
  BRE WILD-TYPE                                             2
               vv
clus            LUNG CLEAR CELL ADENOCARCINOMA
  BRE MUTATED                                0
  BRE WILD-TYPE                              2
               vv
clus            LUNG MICROPAPILLARY ADENOCARCINOMA LUNG MUCINOUS ADENOCARCINOMA
  BRE MUTATED                                    0                            0
  BRE WILD-TYPE                                  2                            2
               vv
clus            LUNG PAPILLARY ADENOCARCINOMA
  BRE MUTATED                               0
  BRE WILD-TYPE                             4
               vv
clus            LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  BRE MUTATED                                               0
  BRE WILD-TYPE                                             1
               vv
clus            MUCINOUS (COLLOID) CARCINOMA
  BRE MUTATED                              0
  BRE WILD-TYPE                            2
D73V9, multiclass
D73V10, binary
               cls
clus              0   1
  BRE MUTATED     0   4
  BRE WILD-TYPE  14 154
[1] "tbl2"
               cls
clus            [,1] [,2]
  BRE MUTATED      0    4
  BRE WILD-TYPE   14  154
     clus
vv    BRE MUTATED BRE WILD-TYPE
  NO            0            14
  YES           4           154
D73V11, continuous
D73V12, continuous
               vv
clus             R0  R1  R2  RX
  BRE MUTATED     3   0   0   0
  BRE WILD-TYPE 112   6   4   9
D73V13, multiclass
    clus
vv   BRE MUTATED BRE WILD-TYPE
  R0           3           112
  R1           0             6
  R2           0             4
  RX           0             9

Clustering(74) Variable = SERPINB13 MUTATION ANALYSIS
D74V1, survival
                     sevent
clus2                  0  1
  SERPINB13 MUTATED    7  1
  SERPINB13 WILD-TYPE 92 55
  SERPINB13 MUTATED SERPINB13 WILD-TYPE 
                  8                 147 
  SERPINB13 MUTATED SERPINB13 WILD-TYPE 
                  1                  55 
$`SERPINB13 MUTATED`
TCGA-05-4398 TCGA-05-4417 TCGA-38-4626 TCGA-44-6774 TCGA-49-6743 TCGA-50-5072 
       47.05        14.93       120.79         5.42        12.13         8.05 
TCGA-67-3771 TCGA-73-4668 
       20.02        15.35 

$`SERPINB13 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
        9.96        24.03         8.02        19.00        20.05         2.96 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        4.96        28.96        22.03         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 
        7.36         5.95         8.68        97.74        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61        14.73        21.93 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       46.98        13.15        44.94        24.36        42.08        42.77 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        37.15        38.24        23.51         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
       23.74        13.71        12.59        13.38        10.78         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
       27.78        11.90        12.16        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46         5.16 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       55.89        15.02        29.26        17.13        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5930 
       70.55        14.96        25.81        31.04        49.28         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
       18.64        29.00        25.12        22.55        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        87.98 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        2.04        42.90        28.41        51.25        28.44         0.99 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
       18.84        14.04        12.66         5.69         4.60        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 
        2.01        52.57        23.38        29.95        26.27         4.27 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 
        1.32         5.39         1.25        12.36        10.62        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       10.16         2.60        13.71 

  SERPINB13 MUTATED SERPINB13 WILD-TYPE 
               5.42                0.07 
  SERPINB13 MUTATED SERPINB13 WILD-TYPE 
             120.79               97.74 
  SERPINB13 MUTATED SERPINB13 WILD-TYPE 
              15.14               21.93 
[1] "5.4 - 120.8 (15.1)" "0.1 - 97.7 (21.9)" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4389          TCGA-05-4390 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4396          TCGA-05-4397          TCGA-05-4398 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" 
         TCGA-05-4402          TCGA-05-4403          TCGA-05-4405 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4415          TCGA-05-4417          TCGA-05-4418 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-05-4420          TCGA-05-4422          TCGA-05-4424 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4425          TCGA-05-4426          TCGA-05-4427 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4430          TCGA-05-4432          TCGA-05-4433 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4434          TCGA-05-5420          TCGA-05-5423 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-5425          TCGA-05-5428          TCGA-05-5429 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-5715          TCGA-35-3615          TCGA-35-4122 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-35-4123          TCGA-35-5375          TCGA-38-4625 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-38-4626          TCGA-38-4627          TCGA-38-4628 
  "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-38-4629          TCGA-38-4630          TCGA-38-4631 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-38-4632          TCGA-38-6178          TCGA-44-2655 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2656          TCGA-44-2657          TCGA-44-2659 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2661          TCGA-44-2662          TCGA-44-2665 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2666          TCGA-44-2668          TCGA-44-3396 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-3398          TCGA-44-3918          TCGA-44-3919 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-4112          TCGA-44-5643          TCGA-44-5645 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-6144          TCGA-44-6145          TCGA-44-6146 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-6147          TCGA-44-6148          TCGA-44-6774 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" 
         TCGA-44-6775          TCGA-44-6776          TCGA-44-6777 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-6778          TCGA-44-6779          TCGA-49-4486 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4487          TCGA-49-4488          TCGA-49-4490 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4494          TCGA-49-4501          TCGA-49-4505 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4506          TCGA-49-4507          TCGA-49-4510 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4512          TCGA-49-4514          TCGA-49-6742 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-6743          TCGA-49-6744          TCGA-49-6745 
  "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5044          TCGA-50-5045          TCGA-50-5049 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5051          TCGA-50-5055          TCGA-50-5066 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5068          TCGA-50-5072          TCGA-50-5930 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-50-5931          TCGA-50-5932          TCGA-50-5933 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5935          TCGA-50-5936          TCGA-50-5939 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5941          TCGA-50-5942          TCGA-50-5944 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5946          TCGA-50-6590          TCGA-50-6591 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-6592          TCGA-50-6593          TCGA-50-6594 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-6595          TCGA-50-6597          TCGA-55-1592 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-55-1594          TCGA-55-1595          TCGA-55-1596 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-55-5899          TCGA-55-6543          TCGA-55-6642 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-55-6712          TCGA-64-1676          TCGA-64-1677 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-1678          TCGA-64-1680          TCGA-64-5774 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-5775          TCGA-64-5778          TCGA-64-5779 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-5781          TCGA-64-5815          TCGA-67-3770 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-67-3771          TCGA-67-3772          TCGA-67-3773 
  "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-67-3774          TCGA-67-6215          TCGA-67-6216 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-67-6217          TCGA-71-6725          TCGA-73-4658 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-73-4659          TCGA-73-4662          TCGA-73-4666 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-73-4668          TCGA-73-4670          TCGA-73-4675 
  "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-73-4676          TCGA-73-4677          TCGA-86-6562 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4389          TCGA-05-4390 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4396          TCGA-05-4397          TCGA-05-4398 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" 
         TCGA-05-4402          TCGA-05-4403          TCGA-05-4405 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4415          TCGA-05-4417          TCGA-05-4418 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-05-4420          TCGA-05-4422          TCGA-05-4424 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4425          TCGA-05-4426          TCGA-05-4427 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4430          TCGA-05-4432          TCGA-05-4433 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4434          TCGA-05-5420          TCGA-05-5423 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-5425          TCGA-05-5428          TCGA-05-5429 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-5715          TCGA-35-3615          TCGA-35-4122 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-35-4123          TCGA-35-5375          TCGA-38-4625 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-38-4626          TCGA-38-4627          TCGA-38-4628 
  "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-38-4629          TCGA-38-4630          TCGA-38-4631 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-38-4632          TCGA-38-6178          TCGA-44-2655 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2656          TCGA-44-2657          TCGA-44-2659 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2661          TCGA-44-2662          TCGA-44-2665 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2666          TCGA-44-2668          TCGA-44-3396 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-3398          TCGA-44-3918          TCGA-44-3919 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-4112          TCGA-44-5643          TCGA-44-5645 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-6144          TCGA-44-6145          TCGA-44-6146 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-6147          TCGA-44-6148          TCGA-44-6774 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" 
         TCGA-44-6775          TCGA-44-6776          TCGA-44-6777 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-6778          TCGA-44-6779          TCGA-49-4486 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4487          TCGA-49-4488          TCGA-49-4490 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4494          TCGA-49-4501          TCGA-49-4505 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4506          TCGA-49-4507          TCGA-49-4510 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4512          TCGA-49-4514          TCGA-49-6742 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-6743          TCGA-49-6744          TCGA-49-6745 
  "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5044          TCGA-50-5045          TCGA-50-5049 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5051          TCGA-50-5055          TCGA-50-5066 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5068          TCGA-50-5072          TCGA-50-5930 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-50-5931          TCGA-50-5932          TCGA-50-5933 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5935          TCGA-50-5936          TCGA-50-5939 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5941          TCGA-50-5942          TCGA-50-5944 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5946          TCGA-50-6590          TCGA-50-6591 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-6592          TCGA-50-6593          TCGA-50-6594 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-6595          TCGA-50-6597          TCGA-55-1592 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-55-1594          TCGA-55-1595          TCGA-55-1596 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-55-5899          TCGA-55-6543          TCGA-55-6642 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-55-6712          TCGA-64-1676          TCGA-64-1677 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-1678          TCGA-64-1680          TCGA-64-5774 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-5775          TCGA-64-5778          TCGA-64-5779 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-5781          TCGA-64-5815          TCGA-67-3770 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-67-3771          TCGA-67-3772          TCGA-67-3773 
  "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-67-3774          TCGA-67-6215          TCGA-67-6216 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-67-6217          TCGA-71-6725          TCGA-73-4658 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-73-4659          TCGA-73-4662          TCGA-73-4666 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-73-4668          TCGA-73-4670          TCGA-73-4675 
  "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-73-4676          TCGA-73-4677          TCGA-86-6562 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4389          TCGA-05-4390 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4396          TCGA-05-4397          TCGA-05-4398 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" 
         TCGA-05-4402          TCGA-05-4403          TCGA-05-4405 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4415          TCGA-05-4417          TCGA-05-4418 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-05-4420          TCGA-05-4422          TCGA-05-4424 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4425          TCGA-05-4426          TCGA-05-4427 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4430          TCGA-05-4432          TCGA-05-4433 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-4434          TCGA-05-5420          TCGA-05-5423 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-5425          TCGA-05-5428          TCGA-05-5429 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-05-5715          TCGA-35-3615          TCGA-35-4122 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-35-4123          TCGA-35-5375          TCGA-38-4625 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-38-4626          TCGA-38-4627          TCGA-38-4628 
  "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-38-4629          TCGA-38-4630          TCGA-38-4631 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-38-4632          TCGA-38-6178          TCGA-44-2655 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2656          TCGA-44-2657          TCGA-44-2659 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2661          TCGA-44-2662          TCGA-44-2665 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2666          TCGA-44-2668          TCGA-44-3396 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-3398          TCGA-44-3918          TCGA-44-3919 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-4112          TCGA-44-5643          TCGA-44-5645 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-6144          TCGA-44-6145          TCGA-44-6146 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-6147          TCGA-44-6148          TCGA-44-6774 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" 
         TCGA-44-6775          TCGA-44-6776          TCGA-44-6777 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-6778          TCGA-44-6779          TCGA-49-4486 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4487          TCGA-49-4488          TCGA-49-4490 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4494          TCGA-49-4501          TCGA-49-4505 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4506          TCGA-49-4507          TCGA-49-4510 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-4512          TCGA-49-4514          TCGA-49-6742 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-49-6743          TCGA-49-6744          TCGA-49-6745 
  "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5044          TCGA-50-5045          TCGA-50-5049 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5051          TCGA-50-5055          TCGA-50-5066 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5068          TCGA-50-5072          TCGA-50-5930 
"SERPINB13 WILD-TYPE"   "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" 
         TCGA-50-5931          TCGA-50-5932          TCGA-50-5933 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5935          TCGA-50-5936          TCGA-50-5939 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5941          TCGA-50-5942          TCGA-50-5944 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-5946          TCGA-50-6590          TCGA-50-6591 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-6592          TCGA-50-6593          TCGA-50-6594 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-50-6595          TCGA-50-6597          TCGA-55-1592 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-55-1594          TCGA-55-1595          TCGA-55-1596 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-55-5899          TCGA-55-6543          TCGA-55-6642 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-55-6712          TCGA-64-1676          TCGA-64-1677 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-1678          TCGA-64-1680          TCGA-64-5774 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-5775          TCGA-64-5778          TCGA-64-5779 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-5781          TCGA-64-5815          TCGA-67-3770 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-67-3771          TCGA-67-3772          TCGA-67-3773 
  "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-67-3774          TCGA-67-6215          TCGA-67-6216 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-67-6217          TCGA-71-6725          TCGA-73-4658 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-73-4659          TCGA-73-4662          TCGA-73-4666 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-73-4668          TCGA-73-4670          TCGA-73-4675 
  "SERPINB13 MUTATED" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-73-4676          TCGA-73-4677          TCGA-86-6562 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
[1] "hr=" "3.5"
D74V2, continuous
                     vv
clus                  STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  SERPINB13 MUTATED          1        2         1         1          3
  SERPINB13 WILD-TYPE       36       51        10        22         30
                     vv
clus                  STAGE IIIB STAGE IV
  SERPINB13 MUTATED            1        0
  SERPINB13 WILD-TYPE          5        9
D74V3, multiclass
                     vv
clus                   T1  T2  T3  T4
  SERPINB13 MUTATED     3   5   0   1
  SERPINB13 WILD-TYPE  38 104  14   7
D74V4, multiclass
    clus
vv   SERPINB13 MUTATED SERPINB13 WILD-TYPE
  T1                 3                  38
  T2                 5                 104
  T3                 0                  14
  T4                 1                   7
                     vv
clus                  N0 N1 N2+N3
  SERPINB13 MUTATED    4  1     4
  SERPINB13 WILD-TYPE 91 36    31
D74V5, multiclass
       clus
vv      SERPINB13 MUTATED SERPINB13 WILD-TYPE
  N0                    4                  91
  N1                    1                  36
  N2+N3                 4                  31
                     vv
clus                   M0  M1  MX
  SERPINB13 MUTATED     8   0   1
  SERPINB13 WILD-TYPE 135   9  17
D74V6, multiclass
    clus
vv   SERPINB13 MUTATED SERPINB13 WILD-TYPE
  M0                 8                 135
  M1                 0                   9
  MX                 1                  17
D74V7, binary
                     cls
clus                   0  1
  SERPINB13 MUTATED    7  2
  SERPINB13 WILD-TYPE 86 77
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  SERPINB13 MUTATED      7    2
  SERPINB13 WILD-TYPE   86   77
        clus
vv       SERPINB13 MUTATED SERPINB13 WILD-TYPE
  FEMALE                 7                  86
  MALE                   2                  77
D74V8, continuous
[1] "Remove cluster labels:" "SERPINB13 MUTATED"     
clus
  SERPINB13 MUTATED SERPINB13 WILD-TYPE 
                  2                  10 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-5778          TCGA-71-6725 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-73-4659          TCGA-73-4662          TCGA-73-4666 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-73-4676 
"SERPINB13 WILD-TYPE" 
                     vv
clus                  LUNG ACINAR ADENOCARCINOMA
  SERPINB13 MUTATED                            0
  SERPINB13 WILD-TYPE                          2
                     vv
clus                  LUNG ADENOCARCINOMA MIXED SUBTYPE
  SERPINB13 MUTATED                                   2
  SERPINB13 WILD-TYPE                                37
                     vv
clus                  LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SERPINB13 MUTATED                                                    5
  SERPINB13 WILD-TYPE                                                110
                     vv
clus                  LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  SERPINB13 MUTATED                                            0
  SERPINB13 WILD-TYPE                                          1
                     vv
clus                  LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  SERPINB13 MUTATED                                               0
  SERPINB13 WILD-TYPE                                             2
                     vv
clus                  LUNG CLEAR CELL ADENOCARCINOMA
  SERPINB13 MUTATED                                1
  SERPINB13 WILD-TYPE                              1
                     vv
clus                  LUNG MICROPAPILLARY ADENOCARCINOMA
  SERPINB13 MUTATED                                    1
  SERPINB13 WILD-TYPE                                  1
                     vv
clus                  LUNG MUCINOUS ADENOCARCINOMA
  SERPINB13 MUTATED                              0
  SERPINB13 WILD-TYPE                            2
                     vv
clus                  LUNG PAPILLARY ADENOCARCINOMA
  SERPINB13 MUTATED                               0
  SERPINB13 WILD-TYPE                             4
                     vv
clus                  LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  SERPINB13 MUTATED                                               0
  SERPINB13 WILD-TYPE                                             1
                     vv
clus                  MUCINOUS (COLLOID) CARCINOMA
  SERPINB13 MUTATED                              0
  SERPINB13 WILD-TYPE                            2
D74V9, multiclass
D74V10, binary
                     cls
clus                    0   1
  SERPINB13 MUTATED     1   8
  SERPINB13 WILD-TYPE  13 150
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  SERPINB13 MUTATED      1    8
  SERPINB13 WILD-TYPE   13  150
     clus
vv    SERPINB13 MUTATED SERPINB13 WILD-TYPE
  NO                  1                  13
  YES                 8                 150
D74V11, continuous
D74V12, continuous
                     vv
clus                   R0  R1  R2  RX
  SERPINB13 MUTATED     6   0   0   0
  SERPINB13 WILD-TYPE 109   6   4   9
D74V13, multiclass
    clus
vv   SERPINB13 MUTATED SERPINB13 WILD-TYPE
  R0                 6                 109
  R1                 0                   6
  R2                 0                   4
  RX                 0                   9

Clustering(75) Variable = GATA3 MUTATION ANALYSIS
D75V1, survival
                 sevent
clus2              0  1
  GATA3 MUTATED    6  0
  GATA3 WILD-TYPE 93 56
  GATA3 MUTATED GATA3 WILD-TYPE 
              6             149 
  GATA3 MUTATED GATA3 WILD-TYPE 
              0              56 
$`GATA3 MUTATED`
TCGA-05-4420 TCGA-50-5946 TCGA-64-1676 TCGA-64-1680 TCGA-64-5781 TCGA-73-4662 
       29.95        22.55        56.81        37.02        51.25        29.95 

$`GATA3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
        2.96        14.93         8.98        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 
       15.02         4.96        28.96        22.03         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        97.74       120.79 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       14.73        21.93        46.98        13.15        44.94        24.36 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       42.08        42.77         3.19         8.09        37.15        38.24 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
       23.51         6.21        23.74        13.71        12.59        13.38 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
       10.78         9.93        27.78        11.90         5.42        12.16 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46         5.16        55.89        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       29.26        17.13        20.48        71.47        70.55        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81        31.04        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12        18.64 
TCGA-50-5942 TCGA-50-5944 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       29.00        25.12        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 
       45.17         2.86         0.07        32.61         0.79        20.65 
TCGA-64-1678 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 
       39.09        87.98         2.04        42.90        28.41        28.44 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99        20.02        18.84        14.04        12.66         5.69 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 
        4.60        13.87         2.01        52.57        23.38        26.27 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 
       15.35         4.27         1.32         5.39         1.25        12.36 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       10.62        41.33        10.16         2.60        13.71 

  GATA3 MUTATED GATA3 WILD-TYPE 
          22.55            0.07 
  GATA3 MUTATED GATA3 WILD-TYPE 
          56.81          120.79 
  GATA3 MUTATED GATA3 WILD-TYPE 
         33.485          20.020 
[1] "22.6 - 56.8 (33.5)" "0.1 - 120.8 (20.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE"   "GATA3 MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"GATA3 WILD-TYPE"   "GATA3 MUTATED" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"GATA3 WILD-TYPE"   "GATA3 MUTATED" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
  "GATA3 MUTATED" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"GATA3 WILD-TYPE"   "GATA3 MUTATED" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE"   "GATA3 MUTATED" "GATA3 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE"   "GATA3 MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"GATA3 WILD-TYPE"   "GATA3 MUTATED" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"GATA3 WILD-TYPE"   "GATA3 MUTATED" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
  "GATA3 MUTATED" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"GATA3 WILD-TYPE"   "GATA3 MUTATED" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE"   "GATA3 MUTATED" "GATA3 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE"   "GATA3 MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"GATA3 WILD-TYPE"   "GATA3 MUTATED" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"GATA3 WILD-TYPE"   "GATA3 MUTATED" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
  "GATA3 MUTATED" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"GATA3 WILD-TYPE"   "GATA3 MUTATED" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE"   "GATA3 MUTATED" "GATA3 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
[1] "hr="     "7.4e+07"
D75V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  GATA3 MUTATED          3        2         0         0          0          0
  GATA3 WILD-TYPE       34       51        11        23         33          6
                 vv
clus              STAGE IV
  GATA3 MUTATED          1
  GATA3 WILD-TYPE        8
D75V3, multiclass
                 vv
clus               T1  T2  T3  T4
  GATA3 MUTATED     3   3   0   0
  GATA3 WILD-TYPE  38 106  14   8
D75V4, multiclass
    clus
vv   GATA3 MUTATED GATA3 WILD-TYPE
  T1             3              38
  T2             3             106
  T3             0              14
  T4             0               8
                 vv
clus              N0 N1 N2+N3
  GATA3 MUTATED    5  0     1
  GATA3 WILD-TYPE 90 37    34
D75V5, multiclass
       clus
vv      GATA3 MUTATED GATA3 WILD-TYPE
  N0                5              90
  N1                0              37
  N2+N3             1              34
                 vv
clus               M0  M1  MX
  GATA3 MUTATED     4   1   1
  GATA3 WILD-TYPE 139   8  17
D75V6, multiclass
    clus
vv   GATA3 MUTATED GATA3 WILD-TYPE
  M0             4             139
  M1             1               8
  MX             1              17
D75V7, binary
                 cls
clus               0  1
  GATA3 MUTATED    2  4
  GATA3 WILD-TYPE 91 75
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GATA3 MUTATED      2    4
  GATA3 WILD-TYPE   91   75
        clus
vv       GATA3 MUTATED GATA3 WILD-TYPE
  FEMALE             2              91
  MALE               4              75
D75V8, continuous
[1] "Remove cluster labels:" "GATA3 MUTATED"         
clus
  GATA3 MUTATED GATA3 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4666 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  GATA3 MUTATED                            0                                 4
  GATA3 WILD-TYPE                          2                                35
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  GATA3 MUTATED                                                    2
  GATA3 WILD-TYPE                                                113
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  GATA3 MUTATED                                            0
  GATA3 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  GATA3 MUTATED                                               0
  GATA3 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  GATA3 MUTATED                                0
  GATA3 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  GATA3 MUTATED                                    0
  GATA3 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  GATA3 MUTATED                              0                             0
  GATA3 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  GATA3 MUTATED                                               0
  GATA3 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  GATA3 MUTATED                              0
  GATA3 WILD-TYPE                            2
D75V9, multiclass
D75V10, binary
                 cls
clus                0   1
  GATA3 MUTATED     1   5
  GATA3 WILD-TYPE  13 153
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GATA3 MUTATED      1    5
  GATA3 WILD-TYPE   13  153
     clus
vv    GATA3 MUTATED GATA3 WILD-TYPE
  NO              1              13
  YES             5             153
D75V11, continuous
D75V12, continuous
                 vv
clus               R0  R1  R2  RX
  GATA3 MUTATED     5   0   0   0
  GATA3 WILD-TYPE 110   6   4   9
D75V13, multiclass
    clus
vv   GATA3 MUTATED GATA3 WILD-TYPE
  R0             5             110
  R1             0               6
  R2             0               4
  RX             0               9

Clustering(76) Variable = GNG2 MUTATION ANALYSIS
D76V1, survival
                sevent
clus2             0  1
  GNG2 MUTATED    2  2
  GNG2 WILD-TYPE 97 54
  GNG2 MUTATED GNG2 WILD-TYPE 
             4            151 
  GNG2 MUTATED GNG2 WILD-TYPE 
             2             54 
$`GNG2 MUTATED`
TCGA-05-5425 TCGA-38-4631 TCGA-49-4514 TCGA-55-1592 
       28.96        11.64        55.89        23.05 

$`GNG2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       21.99        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 
       15.02        15.02         4.96        22.03         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        97.74       120.79 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 
       37.71        49.02        28.37        35.28        44.61        14.73 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       21.93        46.98        13.15        44.94        24.36        42.08 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       42.77         3.19         8.09        37.15        38.24        23.51 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21        23.74        13.71        12.59        13.38        10.78 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93        27.78        11.90         5.42        12.16        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.46         5.16        15.02        12.13        29.26        17.13 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        70.55        14.96        25.81        31.04 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12        18.64        29.00        25.12 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       22.55        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
        6.21        33.37        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        87.98         2.04        42.90        28.41        51.25 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       28.44         0.99        20.02        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        5.69         4.60        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        26.27        15.35         4.27         1.32         5.39 
TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.25        12.36        10.62        41.33        10.16         2.60 
TCGA-91-6836 
       13.71 

  GNG2 MUTATED GNG2 WILD-TYPE 
         11.64           0.07 
  GNG2 MUTATED GNG2 WILD-TYPE 
         55.89         120.79 
  GNG2 MUTATED GNG2 WILD-TYPE 
        26.005         20.480 
[1] "11.6 - 55.9 (26.0)" "0.1 - 120.8 (20.5)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE"   "GNG2 MUTATED" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"GNG2 WILD-TYPE"   "GNG2 MUTATED" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE"   "GNG2 MUTATED" "GNG2 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"GNG2 WILD-TYPE"   "GNG2 MUTATED" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE"   "GNG2 MUTATED" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"GNG2 WILD-TYPE"   "GNG2 MUTATED" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE"   "GNG2 MUTATED" "GNG2 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"GNG2 WILD-TYPE"   "GNG2 MUTATED" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE"   "GNG2 MUTATED" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"GNG2 WILD-TYPE"   "GNG2 MUTATED" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE"   "GNG2 MUTATED" "GNG2 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"GNG2 WILD-TYPE"   "GNG2 MUTATED" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
[1] "hr=" "1.1"
D76V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  GNG2 MUTATED          2        1         0         1          0          0
  GNG2 WILD-TYPE       35       52        11        22         33          6
                vv
clus             STAGE IV
  GNG2 MUTATED          0
  GNG2 WILD-TYPE        9
D76V3, multiclass
                vv
clus              T1  T2  T3  T4
  GNG2 MUTATED     1   3   0   0
  GNG2 WILD-TYPE  40 106  14   8
D76V4, multiclass
    clus
vv   GNG2 MUTATED GNG2 WILD-TYPE
  T1            1             40
  T2            3            106
  T3            0             14
  T4            0              8
                vv
clus             N0 N1 N2+N3
  GNG2 MUTATED    3  1     0
  GNG2 WILD-TYPE 92 36    35
D76V5, multiclass
       clus
vv      GNG2 MUTATED GNG2 WILD-TYPE
  N0               3             92
  N1               1             36
  N2+N3            0             35
                vv
clus              M0  M1  MX
  GNG2 MUTATED     4   0   0
  GNG2 WILD-TYPE 139   9  18
D76V6, multiclass
    clus
vv   GNG2 MUTATED GNG2 WILD-TYPE
  M0            4            139
  M1            0              9
  MX            0             18
D76V7, binary
                cls
clus              0  1
  GNG2 MUTATED    2  2
  GNG2 WILD-TYPE 91 77
[1] "tbl2"
                cls
clus             [,1] [,2]
  GNG2 MUTATED      2    2
  GNG2 WILD-TYPE   91   77
        clus
vv       GNG2 MUTATED GNG2 WILD-TYPE
  FEMALE            2             91
  MALE              2             77
D76V8, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  GNG2 MUTATED                            0                                 1
  GNG2 WILD-TYPE                          2                                38
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  GNG2 MUTATED                                                    2
  GNG2 WILD-TYPE                                                113
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  GNG2 MUTATED                                            0
  GNG2 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  GNG2 MUTATED                                               0
  GNG2 WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  GNG2 MUTATED                                0
  GNG2 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  GNG2 MUTATED                                    0
  GNG2 WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  GNG2 MUTATED                              0                             1
  GNG2 WILD-TYPE                            2                             3
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  GNG2 MUTATED                                               0
  GNG2 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  GNG2 MUTATED                              0
  GNG2 WILD-TYPE                            2
D76V9, multiclass
D76V10, binary
                cls
clus               0   1
  GNG2 MUTATED     0   4
  GNG2 WILD-TYPE  14 154
[1] "tbl2"
                cls
clus             [,1] [,2]
  GNG2 MUTATED      0    4
  GNG2 WILD-TYPE   14  154
     clus
vv    GNG2 MUTATED GNG2 WILD-TYPE
  NO             0             14
  YES            4            154
D76V11, continuous
D76V12, continuous
[1] "Remove cluster labels:" "GNG2 MUTATED"          
clus
  GNG2 MUTATED GNG2 WILD-TYPE 
             2             66 
    TCGA-05-4384     TCGA-05-4390     TCGA-05-4396     TCGA-05-4405 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4410     TCGA-05-4415     TCGA-05-4417     TCGA-05-4424 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4433     TCGA-05-5420     TCGA-05-5423 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-05-5428     TCGA-35-4122     TCGA-35-4123     TCGA-35-5375 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-38-4625     TCGA-38-4626     TCGA-44-2655     TCGA-44-2656 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2659     TCGA-44-2662     TCGA-44-2666 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5645     TCGA-44-6144     TCGA-44-6145 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-6147     TCGA-44-6148     TCGA-44-6774     TCGA-44-6775 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-6776     TCGA-44-6777     TCGA-44-6778     TCGA-44-6779 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-49-4486     TCGA-49-4494     TCGA-49-4505     TCGA-55-1594 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-55-1595     TCGA-55-1596     TCGA-55-5899     TCGA-55-6642 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-64-5781     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-91-6829     TCGA-91-6836 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
                vv
clus              R0  R1  R2  RX
  GNG2 MUTATED     4   0   0   0
  GNG2 WILD-TYPE 111   6   4   9
D76V13, multiclass
    clus
vv   GNG2 MUTATED GNG2 WILD-TYPE
  R0            4            111
  R1            0              6
  R2            0              4
  RX            0              9

Clustering(77) Variable = TSHZ3 MUTATION ANALYSIS
D77V1, survival
                 sevent
clus2              0  1
  TSHZ3 MUTATED   19  4
  TSHZ3 WILD-TYPE 80 52
  TSHZ3 MUTATED TSHZ3 WILD-TYPE 
             23             132 
  TSHZ3 MUTATED TSHZ3 WILD-TYPE 
              4              52 
$`TSHZ3 MUTATED`
TCGA-05-4382 TCGA-05-4417 TCGA-05-4420 TCGA-05-4430 TCGA-05-4432 TCGA-05-5425 
       19.92        14.93        29.95        25.02        25.02        28.96 
TCGA-35-4122 TCGA-35-4123 TCGA-44-2662 TCGA-44-3398 TCGA-44-3918 TCGA-44-6779 
        7.36         5.95        42.08        38.24        23.51        16.41 
TCGA-50-5049 TCGA-50-5933 TCGA-50-5936 TCGA-50-5941 TCGA-55-1596 TCGA-55-5899 
       70.55        77.88         8.45        18.64        45.17         2.86 
TCGA-64-1677 TCGA-64-5774 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 
       20.65        87.98        42.90        51.25        28.44 

$`TSHZ3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 
       50.07         3.98        14.01        45.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4418 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
        8.98        12.00        30.02        21.99        26.01        26.01 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5428 TCGA-05-5429 
       24.00        15.02        15.02         4.96        22.03         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        2.04         0.46         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61        14.73 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2665 
       21.93        46.98        13.15        44.94        24.36        42.77 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
        3.19         8.09        37.15         6.21        23.74        13.71 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
       12.59        13.38        10.78         9.93        27.78        11.90 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-49-4486 
        5.42        12.16        63.72        32.45        36.49        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46         5.16        55.89        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 
       12.13        29.26        17.13        20.48        71.47        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81        31.04        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5935 TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
       35.87        21.47        15.12        29.00        25.12        22.55 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-6543 TCGA-55-6642 
       33.37        23.05        38.73        48.62         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1678 TCGA-64-1680 TCGA-64-5775 TCGA-64-5779 
        0.79        56.81        39.09        37.02         2.04        28.41 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99        20.02        18.84        14.04        12.66         5.69 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        4.60        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       26.27        15.35         4.27         1.32         5.39         1.25 
TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       12.36        10.62        41.33        10.16         2.60        13.71 

  TSHZ3 MUTATED TSHZ3 WILD-TYPE 
           2.86            0.07 
  TSHZ3 MUTATED TSHZ3 WILD-TYPE 
          87.98          120.79 
  TSHZ3 MUTATED TSHZ3 WILD-TYPE 
          25.02           19.51 
[1] "2.9 - 88.0 (25.0)"  "0.1 - 120.8 (19.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
  "TSHZ3 MUTATED"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED"   "TSHZ3 MUTATED" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
  "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
  "TSHZ3 MUTATED"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
  "TSHZ3 MUTATED"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED"   "TSHZ3 MUTATED" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
  "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
  "TSHZ3 MUTATED"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
  "TSHZ3 MUTATED"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED"   "TSHZ3 MUTATED" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
  "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
  "TSHZ3 MUTATED"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"TSHZ3 WILD-TYPE"   "TSHZ3 MUTATED"   "TSHZ3 MUTATED" "TSHZ3 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" "TSHZ3 WILD-TYPE" 
[1] "hr=" "3.3"
D77V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  TSHZ3 MUTATED          6        8         0         6          4          1
  TSHZ3 WILD-TYPE       31       45        11        17         29          5
                 vv
clus              STAGE IV
  TSHZ3 MUTATED          0
  TSHZ3 WILD-TYPE        9
D77V3, multiclass
                 vv
clus              T1 T2 T3 T4
  TSHZ3 MUTATED    5 17  2  1
  TSHZ3 WILD-TYPE 36 92 12  7
D77V4, multiclass
    clus
vv   TSHZ3 MUTATED TSHZ3 WILD-TYPE
  T1             5              36
  T2            17              92
  T3             2              12
  T4             1               7
                 vv
clus              N0 N1 N2+N3
  TSHZ3 MUTATED   14  6     5
  TSHZ3 WILD-TYPE 81 31    30
D77V5, multiclass
       clus
vv      TSHZ3 MUTATED TSHZ3 WILD-TYPE
  N0               14              81
  N1                6              31
  N2+N3             5              30
                 vv
clus               M0  M1  MX
  TSHZ3 MUTATED    23   0   2
  TSHZ3 WILD-TYPE 120   9  16
D77V6, multiclass
    clus
vv   TSHZ3 MUTATED TSHZ3 WILD-TYPE
  M0            23             120
  M1             0               9
  MX             2              16
D77V7, binary
                 cls
clus               0  1
  TSHZ3 MUTATED   10 15
  TSHZ3 WILD-TYPE 83 64
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TSHZ3 MUTATED     10   15
  TSHZ3 WILD-TYPE   83   64
        clus
vv       TSHZ3 MUTATED TSHZ3 WILD-TYPE
  FEMALE            10              83
  MALE              15              64
D77V8, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  TSHZ3 MUTATED                            0                                 8
  TSHZ3 WILD-TYPE                          2                                31
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  TSHZ3 MUTATED                                                   14
  TSHZ3 WILD-TYPE                                                101
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  TSHZ3 MUTATED                                            0
  TSHZ3 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  TSHZ3 MUTATED                                               1
  TSHZ3 WILD-TYPE                                             1
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  TSHZ3 MUTATED                                0
  TSHZ3 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  TSHZ3 MUTATED                                    0
  TSHZ3 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  TSHZ3 MUTATED                              0                             1
  TSHZ3 WILD-TYPE                            2                             3
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  TSHZ3 MUTATED                                               0
  TSHZ3 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  TSHZ3 MUTATED                              1
  TSHZ3 WILD-TYPE                            1
D77V9, multiclass
D77V10, binary
                 cls
clus                0   1
  TSHZ3 MUTATED     2  23
  TSHZ3 WILD-TYPE  12 135
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TSHZ3 MUTATED      2   23
  TSHZ3 WILD-TYPE   12  135
     clus
vv    TSHZ3 MUTATED TSHZ3 WILD-TYPE
  NO              2              12
  YES            23             135
D77V11, continuous
D77V12, continuous
                 vv
clus              R0 R1 R2 RX
  TSHZ3 MUTATED   19  0  1  0
  TSHZ3 WILD-TYPE 96  6  3  9
D77V13, multiclass
    clus
vv   TSHZ3 MUTATED TSHZ3 WILD-TYPE
  R0            19              96
  R1             0               6
  R2             1               3
  RX             0               9

Clustering(78) Variable = GPR158 MUTATION ANALYSIS
D78V1, survival
                  sevent
clus2               0  1
  GPR158 MUTATED    8  8
  GPR158 WILD-TYPE 91 48
  GPR158 MUTATED GPR158 WILD-TYPE 
              16              139 
  GPR158 MUTATED GPR158 WILD-TYPE 
               8               48 
$`GPR158 MUTATED`
TCGA-05-4382 TCGA-05-4398 TCGA-05-4427 TCGA-05-4432 TCGA-05-5420 TCGA-38-4625 
       19.92        47.05        26.01        25.02        15.02        97.74 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4631 TCGA-38-4632 TCGA-44-3918 TCGA-44-6777 
       49.02        28.37        11.64        44.61        23.51        32.45 
TCGA-50-5930 TCGA-50-6590 TCGA-50-6594 TCGA-67-3771 
        9.27        42.31        12.16        20.02 

$`GPR158 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 
       50.07         3.98        14.01        45.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 
       25.02        24.00        15.02         4.96        28.96        22.03 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4630 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
      120.79        37.71        35.28        14.73        21.93        46.98 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        44.94        24.36        42.08        42.77         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
        8.09        37.15        38.24         6.21        23.74        13.71 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
       12.59        13.38        10.78         9.93        27.78        11.90 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        5.42        12.16        63.72        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46         5.16        55.89        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        29.26        17.13        20.48        71.47        70.55 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5931 
       14.96        25.81        31.04        49.28         8.05         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12        18.64 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       29.00        25.12        22.55         3.88        25.51        11.05 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        87.98         2.04        42.90        28.41 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       51.25        28.44         0.99        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        5.69         4.60        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        26.27        15.35         4.27         1.32         5.39 
TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.25        12.36        10.62        41.33        10.16         2.60 
TCGA-91-6836 
       13.71 

  GPR158 MUTATED GPR158 WILD-TYPE 
            9.27             0.07 
  GPR158 MUTATED GPR158 WILD-TYPE 
           97.74           120.79 
  GPR158 MUTATED GPR158 WILD-TYPE 
          25.515           20.050 
[1] "9.3 - 97.7 (25.5)"  "0.1 - 120.8 (20.1)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
  "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "GPR158 MUTATED" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED"   "GPR158 MUTATED" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"GPR158 WILD-TYPE"   "GPR158 MUTATED"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
  "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
  "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
  "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "GPR158 MUTATED" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED"   "GPR158 MUTATED" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"GPR158 WILD-TYPE"   "GPR158 MUTATED"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
  "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
  "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
  "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "GPR158 MUTATED" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED"   "GPR158 MUTATED" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"GPR158 WILD-TYPE"   "GPR158 MUTATED"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
  "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE"   "GPR158 MUTATED" "GPR158 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
  "GPR158 MUTATED" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
[1] "hr=" "1.1"
D78V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  GPR158 MUTATED          2        6         0         5          3          1
  GPR158 WILD-TYPE       35       47        11        18         30          5
                  vv
clus               STAGE IV
  GPR158 MUTATED          1
  GPR158 WILD-TYPE        8
D78V3, multiclass
                  vv
clus               T1 T2 T3 T4
  GPR158 MUTATED    2 12  3  1
  GPR158 WILD-TYPE 39 97 11  7
D78V4, multiclass
    clus
vv   GPR158 MUTATED GPR158 WILD-TYPE
  T1              2               39
  T2             12               97
  T3              3               11
  T4              1                7
                  vv
clus               N0 N1 N2+N3
  GPR158 MUTATED    9  4     4
  GPR158 WILD-TYPE 86 33    31
D78V5, multiclass
       clus
vv      GPR158 MUTATED GPR158 WILD-TYPE
  N0                 9               86
  N1                 4               33
  N2+N3              4               31
                  vv
clus                M0  M1  MX
  GPR158 MUTATED    15   1   2
  GPR158 WILD-TYPE 128   8  16
D78V6, multiclass
    clus
vv   GPR158 MUTATED GPR158 WILD-TYPE
  M0             15              128
  M1              1                8
  MX              2               16
D78V7, binary
                  cls
clus                0  1
  GPR158 MUTATED   11  7
  GPR158 WILD-TYPE 82 72
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GPR158 MUTATED     11    7
  GPR158 WILD-TYPE   82   72
        clus
vv       GPR158 MUTATED GPR158 WILD-TYPE
  FEMALE             11               82
  MALE                7               72
D78V8, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  GPR158 MUTATED                            0                                 6
  GPR158 WILD-TYPE                          2                                33
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  GPR158 MUTATED                                                   12
  GPR158 WILD-TYPE                                                103
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  GPR158 MUTATED                                            0
  GPR158 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  GPR158 MUTATED                                               0
  GPR158 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  GPR158 MUTATED                                0
  GPR158 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  GPR158 MUTATED                                    0
  GPR158 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  GPR158 MUTATED                              0                             0
  GPR158 WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  GPR158 MUTATED                                               0
  GPR158 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  GPR158 MUTATED                              0
  GPR158 WILD-TYPE                            2
D78V9, multiclass
D78V10, binary
                  cls
clus                 0   1
  GPR158 MUTATED     2  16
  GPR158 WILD-TYPE  12 142
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GPR158 MUTATED      2   16
  GPR158 WILD-TYPE   12  142
     clus
vv    GPR158 MUTATED GPR158 WILD-TYPE
  NO               2               12
  YES             16              142
D78V11, continuous
D78V12, continuous
                  vv
clus                R0  R1  R2  RX
  GPR158 MUTATED    13   0   0   1
  GPR158 WILD-TYPE 102   6   4   8
D78V13, multiclass
    clus
vv   GPR158 MUTATED GPR158 WILD-TYPE
  R0             13              102
  R1              0                6
  R2              0                4
  RX              1                8

Clustering(79) Variable = SPTA1 MUTATION ANALYSIS
D79V1, survival
                 sevent
clus2              0  1
  SPTA1 MUTATED   32 14
  SPTA1 WILD-TYPE 67 42
  SPTA1 MUTATED SPTA1 WILD-TYPE 
             46             109 
  SPTA1 MUTATED SPTA1 WILD-TYPE 
             14              42 
$`SPTA1 MUTATED`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 
       50.07         3.98        19.92        45.01        37.02         9.96 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4417 TCGA-05-4422 TCGA-05-4424 
       47.05         8.02        20.05        14.93        12.00        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-5428 TCGA-35-3615 TCGA-35-4123 TCGA-35-5375 
       26.01        26.01        22.03         0.46         5.95         8.68 
TCGA-38-4632 TCGA-44-2657 TCGA-44-2659 TCGA-44-2668 TCGA-44-3918 TCGA-44-4112 
       44.61        13.15        44.94         8.09        23.51        23.74 
TCGA-44-6778 TCGA-49-4488 TCGA-49-4506 TCGA-49-4507 TCGA-49-4514 TCGA-49-6742 
       36.49        28.57        32.84         8.81        55.89        15.02 
TCGA-50-5045 TCGA-50-5933 TCGA-50-5941 TCGA-50-6590 TCGA-50-6597 TCGA-55-1595 
       71.47        77.88        18.64        42.31        33.37        48.62 
TCGA-55-1596 TCGA-64-1676 TCGA-64-5775 TCGA-64-5781 TCGA-67-3770 TCGA-67-3773 
       45.17        56.81         2.04        51.25         0.99        14.04 
TCGA-67-6217 TCGA-73-4658 TCGA-73-4662 TCGA-91-6836 
       13.87        52.57        29.95        13.71 

$`SPTA1 WILD-TYPE`
TCGA-05-4384 TCGA-05-4397 TCGA-05-4403 TCGA-05-4415 TCGA-05-4418 TCGA-05-4420 
       14.01        24.03        19.00         2.96         8.98        29.95 
TCGA-05-4425 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       21.99        25.02        25.02        24.00        15.02        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-4122 TCGA-38-4625 
        4.96        28.96         0.99         2.04         7.36        97.74 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
      120.79        37.71        49.02        28.37        35.28        11.64 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       14.73        21.93        46.98        24.36        42.08        42.77 
TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-5643 TCGA-44-5645 
        3.19        37.15        38.24         6.21        13.71        12.59 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
       13.38        10.78         9.93        27.78        11.90         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       12.16        63.72        32.45        16.41        76.21        28.11 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4510 TCGA-49-4512 
       12.66        35.54        46.72        14.07        29.46         5.16 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5049 TCGA-50-5051 
       12.13        29.26        17.13        20.48        70.55        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81        31.04        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 
       35.87        21.47         8.45        15.12        29.00        25.12 
TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       22.55         3.88        25.51        11.05        12.16         6.21 
TCGA-55-1592 TCGA-55-1594 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       23.05        38.73         2.86         0.07        32.61         0.79 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 
       20.65        39.09        37.02        87.98        42.90        28.41 
TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       28.44        20.02        18.84        12.66         5.69         4.60 
TCGA-71-6725 TCGA-73-4659 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
        2.01        23.38        26.27        15.35         4.27         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        5.39         1.25        12.36        10.62        41.33        10.16 
TCGA-91-6835 
        2.60 

  SPTA1 MUTATED SPTA1 WILD-TYPE 
           0.46            0.07 
  SPTA1 MUTATED SPTA1 WILD-TYPE 
          77.88          120.79 
  SPTA1 MUTATED SPTA1 WILD-TYPE 
         24.875          19.000 
[1] "0.5 - 77.9 (24.9)"  "0.1 - 120.8 (19.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "SPTA1 MUTATED"   "SPTA1 MUTATED"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
  "SPTA1 MUTATED"   "SPTA1 MUTATED"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "SPTA1 MUTATED"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
  "SPTA1 MUTATED"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
  "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED"   "SPTA1 MUTATED" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
  "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED"   "SPTA1 MUTATED" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED"   "SPTA1 MUTATED" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
  "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
  "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
  "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
  "SPTA1 MUTATED" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "SPTA1 MUTATED"   "SPTA1 MUTATED"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
  "SPTA1 MUTATED"   "SPTA1 MUTATED"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "SPTA1 MUTATED"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
  "SPTA1 MUTATED"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
  "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED"   "SPTA1 MUTATED" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
  "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED"   "SPTA1 MUTATED" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED"   "SPTA1 MUTATED" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
  "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
  "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
  "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
  "SPTA1 MUTATED" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "SPTA1 MUTATED"   "SPTA1 MUTATED"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
  "SPTA1 MUTATED"   "SPTA1 MUTATED"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "SPTA1 MUTATED"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
  "SPTA1 MUTATED"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
  "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED"   "SPTA1 MUTATED" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
  "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED"   "SPTA1 MUTATED" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED"   "SPTA1 MUTATED" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
  "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
  "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
  "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
  "SPTA1 MUTATED" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" "SPTA1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"SPTA1 WILD-TYPE" "SPTA1 WILD-TYPE"   "SPTA1 MUTATED" 
[1] "hr=" "1.7"
D79V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  SPTA1 MUTATED         11       19         3         7          5          3
  SPTA1 WILD-TYPE       26       34         8        16         28          3
                 vv
clus              STAGE IV
  SPTA1 MUTATED          3
  SPTA1 WILD-TYPE        6
D79V3, multiclass
                 vv
clus              T1 T2 T3 T4
  SPTA1 MUTATED   12 31  4  4
  SPTA1 WILD-TYPE 29 78 10  4
D79V4, multiclass
    clus
vv   SPTA1 MUTATED SPTA1 WILD-TYPE
  T1            12              29
  T2            31              78
  T3             4              10
  T4             4               4
                 vv
clus              N0 N1 N2+N3
  SPTA1 MUTATED   31 13     5
  SPTA1 WILD-TYPE 64 24    30
D79V5, multiclass
       clus
vv      SPTA1 MUTATED SPTA1 WILD-TYPE
  N0               31              64
  N1               13              24
  N2+N3             5              30
                 vv
clus              M0 M1 MX
  SPTA1 MUTATED   44  3  4
  SPTA1 WILD-TYPE 99  6 14
D79V6, multiclass
    clus
vv   SPTA1 MUTATED SPTA1 WILD-TYPE
  M0            44              99
  M1             3               6
  MX             4              14
D79V7, binary
                 cls
clus               0  1
  SPTA1 MUTATED   29 22
  SPTA1 WILD-TYPE 64 57
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SPTA1 MUTATED     29   22
  SPTA1 WILD-TYPE   64   57
        clus
vv       SPTA1 MUTATED SPTA1 WILD-TYPE
  FEMALE            29              64
  MALE              22              57
D79V8, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  SPTA1 MUTATED                            0                                15
  SPTA1 WILD-TYPE                          2                                24
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SPTA1 MUTATED                                                   31
  SPTA1 WILD-TYPE                                                 84
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  SPTA1 MUTATED                                            0
  SPTA1 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  SPTA1 MUTATED                                               0
  SPTA1 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  SPTA1 MUTATED                                1
  SPTA1 WILD-TYPE                              1
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  SPTA1 MUTATED                                    1
  SPTA1 WILD-TYPE                                  1
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  SPTA1 MUTATED                              0                             1
  SPTA1 WILD-TYPE                            2                             3
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  SPTA1 MUTATED                                               1
  SPTA1 WILD-TYPE                                             0
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  SPTA1 MUTATED                              1
  SPTA1 WILD-TYPE                            1
D79V9, multiclass
D79V10, binary
                 cls
clus                0   1
  SPTA1 MUTATED     3  48
  SPTA1 WILD-TYPE  11 110
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SPTA1 MUTATED      3   48
  SPTA1 WILD-TYPE   11  110
     clus
vv    SPTA1 MUTATED SPTA1 WILD-TYPE
  NO              3              11
  YES            48             110
D79V11, continuous
D79V12, continuous
                 vv
clus              R0 R1 R2 RX
  SPTA1 MUTATED   38  2  2  2
  SPTA1 WILD-TYPE 77  4  2  7
D79V13, multiclass
    clus
vv   SPTA1 MUTATED SPTA1 WILD-TYPE
  R0            38              77
  R1             2               4
  R2             2               2
  RX             2               7

Clustering(80) Variable = PDGFA MUTATION ANALYSIS
D80V1, survival
                 sevent
clus2              0  1
  PDGFA MUTATED    2  2
  PDGFA WILD-TYPE 97 54
  PDGFA MUTATED PDGFA WILD-TYPE 
              4             151 
  PDGFA MUTATED PDGFA WILD-TYPE 
              2              54 
$`PDGFA MUTATED`
TCGA-05-4389 TCGA-05-4396 TCGA-44-2656 TCGA-50-5936 
       45.01         9.96        46.98         8.45 

$`PDGFA WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       50.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        4.96        28.96        22.03         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61        14.73 
TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       21.93        13.15        44.94        24.36        42.08        42.77 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        37.15        38.24        23.51         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
       23.74        13.71        12.59        13.38        10.78         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
       27.78        11.90         5.42        12.16        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
        5.16        55.89        15.02        12.13        29.26        17.13 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        70.55        14.96        25.81        31.04 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
       21.47        15.12        18.64        29.00        25.12        22.55 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        87.98         2.04        42.90        28.41        51.25 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       28.44         0.99        20.02        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        5.69         4.60        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        26.27        15.35         4.27         1.32         5.39 
TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.25        12.36        10.62        41.33        10.16         2.60 
TCGA-91-6836 
       13.71 

  PDGFA MUTATED PDGFA WILD-TYPE 
           8.45            0.07 
  PDGFA MUTATED PDGFA WILD-TYPE 
          46.98          120.79 
  PDGFA MUTATED PDGFA WILD-TYPE 
         27.485          20.650 
[1] "8.4 - 47.0 (27.5)"  "0.1 - 120.8 (20.6)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
  "PDGFA MUTATED" "PDGFA WILD-TYPE"   "PDGFA MUTATED" "PDGFA WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"PDGFA WILD-TYPE"   "PDGFA MUTATED" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
  "PDGFA MUTATED" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
  "PDGFA MUTATED" "PDGFA WILD-TYPE"   "PDGFA MUTATED" "PDGFA WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"PDGFA WILD-TYPE"   "PDGFA MUTATED" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
  "PDGFA MUTATED" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
  "PDGFA MUTATED" "PDGFA WILD-TYPE"   "PDGFA MUTATED" "PDGFA WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"PDGFA WILD-TYPE"   "PDGFA MUTATED" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
  "PDGFA MUTATED" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
[1] "hr=" "1.2"
D80V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  PDGFA MUTATED          1        2         0         0          1          1
  PDGFA WILD-TYPE       36       51        11        23         32          5
                 vv
clus              STAGE IV
  PDGFA MUTATED          0
  PDGFA WILD-TYPE        9
D80V3, multiclass
                 vv
clus               T1  T2  T3  T4
  PDGFA MUTATED     1   3   0   1
  PDGFA WILD-TYPE  40 106  14   7
D80V4, multiclass
    clus
vv   PDGFA MUTATED PDGFA WILD-TYPE
  T1             1              40
  T2             3             106
  T3             0              14
  T4             1               7
                 vv
clus              N0 N1 N2+N3
  PDGFA MUTATED    3  1     1
  PDGFA WILD-TYPE 92 36    34
D80V5, multiclass
       clus
vv      PDGFA MUTATED PDGFA WILD-TYPE
  N0                3              92
  N1                1              36
  N2+N3             1              34
                 vv
clus               M0  M1  MX
  PDGFA MUTATED     5   0   0
  PDGFA WILD-TYPE 138   9  18
D80V6, multiclass
    clus
vv   PDGFA MUTATED PDGFA WILD-TYPE
  M0             5             138
  M1             0               9
  MX             0              18
D80V7, binary
                 cls
clus               0  1
  PDGFA MUTATED    0  5
  PDGFA WILD-TYPE 93 74
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PDGFA MUTATED      0    5
  PDGFA WILD-TYPE   93   74
        clus
vv       PDGFA MUTATED PDGFA WILD-TYPE
  FEMALE             0              93
  MALE               5              74
D80V8, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  PDGFA MUTATED                            0                                 3
  PDGFA WILD-TYPE                          2                                36
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  PDGFA MUTATED                                                    1
  PDGFA WILD-TYPE                                                114
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  PDGFA MUTATED                                            0
  PDGFA WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  PDGFA MUTATED                                               0
  PDGFA WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  PDGFA MUTATED                                0
  PDGFA WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  PDGFA MUTATED                                    0
  PDGFA WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  PDGFA MUTATED                              0                             0
  PDGFA WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  PDGFA MUTATED                                               0
  PDGFA WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  PDGFA MUTATED                              1
  PDGFA WILD-TYPE                            1
D80V9, multiclass
D80V10, binary
                 cls
clus                0   1
  PDGFA MUTATED     0   5
  PDGFA WILD-TYPE  14 153
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PDGFA MUTATED      0    5
  PDGFA WILD-TYPE   14  153
     clus
vv    PDGFA MUTATED PDGFA WILD-TYPE
  NO              0              14
  YES             5             153
D80V11, continuous
D80V12, continuous
                 vv
clus               R0  R1  R2  RX
  PDGFA MUTATED     2   0   0   1
  PDGFA WILD-TYPE 113   6   4   8
D80V13, multiclass
    clus
vv   PDGFA MUTATED PDGFA WILD-TYPE
  R0             2             113
  R1             0               6
  R2             0               4
  RX             1               8

Clustering(81) Variable = F8 MUTATION ANALYSIS
D81V1, survival
              sevent
clus2           0  1
  F8 MUTATED    9  4
  F8 WILD-TYPE 90 52
  F8 MUTATED F8 WILD-TYPE 
          13          142 
  F8 MUTATED F8 WILD-TYPE 
           4           52 
$`F8 MUTATED`
TCGA-05-4390 TCGA-05-4396 TCGA-05-4405 TCGA-44-2656 TCGA-44-6777 TCGA-44-6778 
       37.02         9.96        20.05        46.98        32.45        36.49 
TCGA-49-6745 TCGA-50-5931 TCGA-50-6594 TCGA-67-3771 TCGA-67-3774 TCGA-73-4662 
       17.13         8.78        12.16        20.02        12.66        29.95 
TCGA-73-4670 
        4.27 

$`F8 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4397 
       50.07         3.98        19.92        14.01        45.01        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        19.00         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
       29.95        12.00        30.02        21.99        26.01        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02        15.02         4.96 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
       28.96        22.03         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        97.74       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61        14.73        21.93 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        44.94        24.36        42.08        42.77         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        37.15        38.24        23.51         6.21        23.74 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       13.71        12.59        13.38        10.78         9.93        27.78 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6779 TCGA-49-4486 
       11.90         5.42        12.16        63.72        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46         5.16        55.89        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.13        29.26        20.48        71.47        70.55        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 
       25.81        31.04        49.28         8.05         9.27        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12        18.64        29.00 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       25.12        22.55        42.31         3.88        25.51        11.05 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        87.98         2.04        42.90        28.41 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-6215 
       51.25        28.44         0.99        18.84        14.04         5.69 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 
        4.60        13.87         2.01        52.57        23.38        26.27 
TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 
       15.35         1.32         5.39         1.25        12.36        10.62 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33        10.16         2.60        13.71 

  F8 MUTATED F8 WILD-TYPE 
        4.27         0.07 
  F8 MUTATED F8 WILD-TYPE 
       46.98       120.79 
  F8 MUTATED F8 WILD-TYPE 
       20.02        21.70 
[1] "4.3 - 47.0 (20.0)"  "0.1 - 120.8 (21.7)"
  TCGA-05-4249   TCGA-05-4250   TCGA-05-4382   TCGA-05-4384   TCGA-05-4389 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-05-4390   TCGA-05-4396   TCGA-05-4397   TCGA-05-4398   TCGA-05-4402 
  "F8 MUTATED"   "F8 MUTATED" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-05-4403   TCGA-05-4405   TCGA-05-4415   TCGA-05-4417   TCGA-05-4418 
"F8 WILD-TYPE"   "F8 MUTATED" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-05-4420   TCGA-05-4422   TCGA-05-4424   TCGA-05-4425   TCGA-05-4426 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-05-4427   TCGA-05-4430   TCGA-05-4432   TCGA-05-4433   TCGA-05-4434 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-05-5420   TCGA-05-5423   TCGA-05-5425   TCGA-05-5428   TCGA-05-5429 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-05-5715   TCGA-35-3615   TCGA-35-4122   TCGA-35-4123   TCGA-35-5375 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-38-4625   TCGA-38-4626   TCGA-38-4627   TCGA-38-4628   TCGA-38-4629 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-38-4630   TCGA-38-4631   TCGA-38-4632   TCGA-38-6178   TCGA-44-2655 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-44-2656   TCGA-44-2657   TCGA-44-2659   TCGA-44-2661   TCGA-44-2662 
  "F8 MUTATED" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-44-2665   TCGA-44-2666   TCGA-44-2668   TCGA-44-3396   TCGA-44-3398 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-44-3918   TCGA-44-3919   TCGA-44-4112   TCGA-44-5643   TCGA-44-5645 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-44-6144   TCGA-44-6145   TCGA-44-6146   TCGA-44-6147   TCGA-44-6148 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-44-6774   TCGA-44-6775   TCGA-44-6776   TCGA-44-6777   TCGA-44-6778 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE"   "F8 MUTATED"   "F8 MUTATED" 
  TCGA-44-6779   TCGA-49-4486   TCGA-49-4487   TCGA-49-4488   TCGA-49-4490 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-49-4494   TCGA-49-4501   TCGA-49-4505   TCGA-49-4506   TCGA-49-4507 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-49-4510   TCGA-49-4512   TCGA-49-4514   TCGA-49-6742   TCGA-49-6743 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-49-6744   TCGA-49-6745   TCGA-50-5044   TCGA-50-5045   TCGA-50-5049 
"F8 WILD-TYPE"   "F8 MUTATED" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-50-5051   TCGA-50-5055   TCGA-50-5066   TCGA-50-5068   TCGA-50-5072 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-50-5930   TCGA-50-5931   TCGA-50-5932   TCGA-50-5933   TCGA-50-5935 
"F8 WILD-TYPE"   "F8 MUTATED" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-50-5936   TCGA-50-5939   TCGA-50-5941   TCGA-50-5942   TCGA-50-5944 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-50-5946   TCGA-50-6590   TCGA-50-6591   TCGA-50-6592   TCGA-50-6593 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-50-6594   TCGA-50-6595   TCGA-50-6597   TCGA-55-1592   TCGA-55-1594 
  "F8 MUTATED" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-55-1595   TCGA-55-1596   TCGA-55-5899   TCGA-55-6543   TCGA-55-6642 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-55-6712   TCGA-64-1676   TCGA-64-1677   TCGA-64-1678   TCGA-64-1680 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-64-5774   TCGA-64-5775   TCGA-64-5778   TCGA-64-5779   TCGA-64-5781 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-64-5815   TCGA-67-3770   TCGA-67-3771   TCGA-67-3772   TCGA-67-3773 
"F8 WILD-TYPE" "F8 WILD-TYPE"   "F8 MUTATED" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-67-3774   TCGA-67-6215   TCGA-67-6216   TCGA-67-6217   TCGA-71-6725 
  "F8 MUTATED" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-73-4658   TCGA-73-4659   TCGA-73-4662   TCGA-73-4666   TCGA-73-4668 
"F8 WILD-TYPE" "F8 WILD-TYPE"   "F8 MUTATED" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-73-4670   TCGA-73-4675   TCGA-73-4676   TCGA-73-4677   TCGA-86-6562 
  "F8 MUTATED" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-91-6828   TCGA-91-6829   TCGA-91-6831   TCGA-91-6835   TCGA-91-6836 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-05-4249   TCGA-05-4250   TCGA-05-4382   TCGA-05-4384   TCGA-05-4389 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-05-4390   TCGA-05-4396   TCGA-05-4397   TCGA-05-4398   TCGA-05-4402 
  "F8 MUTATED"   "F8 MUTATED" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-05-4403   TCGA-05-4405   TCGA-05-4415   TCGA-05-4417   TCGA-05-4418 
"F8 WILD-TYPE"   "F8 MUTATED" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-05-4420   TCGA-05-4422   TCGA-05-4424   TCGA-05-4425   TCGA-05-4426 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-05-4427   TCGA-05-4430   TCGA-05-4432   TCGA-05-4433   TCGA-05-4434 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-05-5420   TCGA-05-5423   TCGA-05-5425   TCGA-05-5428   TCGA-05-5429 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-05-5715   TCGA-35-3615   TCGA-35-4122   TCGA-35-4123   TCGA-35-5375 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-38-4625   TCGA-38-4626   TCGA-38-4627   TCGA-38-4628   TCGA-38-4629 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-38-4630   TCGA-38-4631   TCGA-38-4632   TCGA-38-6178   TCGA-44-2655 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-44-2656   TCGA-44-2657   TCGA-44-2659   TCGA-44-2661   TCGA-44-2662 
  "F8 MUTATED" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-44-2665   TCGA-44-2666   TCGA-44-2668   TCGA-44-3396   TCGA-44-3398 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-44-3918   TCGA-44-3919   TCGA-44-4112   TCGA-44-5643   TCGA-44-5645 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-44-6144   TCGA-44-6145   TCGA-44-6146   TCGA-44-6147   TCGA-44-6148 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-44-6774   TCGA-44-6775   TCGA-44-6776   TCGA-44-6777   TCGA-44-6778 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE"   "F8 MUTATED"   "F8 MUTATED" 
  TCGA-44-6779   TCGA-49-4486   TCGA-49-4487   TCGA-49-4488   TCGA-49-4490 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-49-4494   TCGA-49-4501   TCGA-49-4505   TCGA-49-4506   TCGA-49-4507 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-49-4510   TCGA-49-4512   TCGA-49-4514   TCGA-49-6742   TCGA-49-6743 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-49-6744   TCGA-49-6745   TCGA-50-5044   TCGA-50-5045   TCGA-50-5049 
"F8 WILD-TYPE"   "F8 MUTATED" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-50-5051   TCGA-50-5055   TCGA-50-5066   TCGA-50-5068   TCGA-50-5072 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-50-5930   TCGA-50-5931   TCGA-50-5932   TCGA-50-5933   TCGA-50-5935 
"F8 WILD-TYPE"   "F8 MUTATED" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-50-5936   TCGA-50-5939   TCGA-50-5941   TCGA-50-5942   TCGA-50-5944 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-50-5946   TCGA-50-6590   TCGA-50-6591   TCGA-50-6592   TCGA-50-6593 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-50-6594   TCGA-50-6595   TCGA-50-6597   TCGA-55-1592   TCGA-55-1594 
  "F8 MUTATED" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-55-1595   TCGA-55-1596   TCGA-55-5899   TCGA-55-6543   TCGA-55-6642 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-55-6712   TCGA-64-1676   TCGA-64-1677   TCGA-64-1678   TCGA-64-1680 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-64-5774   TCGA-64-5775   TCGA-64-5778   TCGA-64-5779   TCGA-64-5781 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-64-5815   TCGA-67-3770   TCGA-67-3771   TCGA-67-3772   TCGA-67-3773 
"F8 WILD-TYPE" "F8 WILD-TYPE"   "F8 MUTATED" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-67-3774   TCGA-67-6215   TCGA-67-6216   TCGA-67-6217   TCGA-71-6725 
  "F8 MUTATED" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-73-4658   TCGA-73-4659   TCGA-73-4662   TCGA-73-4666   TCGA-73-4668 
"F8 WILD-TYPE" "F8 WILD-TYPE"   "F8 MUTATED" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-73-4670   TCGA-73-4675   TCGA-73-4676   TCGA-73-4677   TCGA-86-6562 
  "F8 MUTATED" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-91-6828   TCGA-91-6829   TCGA-91-6831   TCGA-91-6835   TCGA-91-6836 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-05-4249   TCGA-05-4250   TCGA-05-4382   TCGA-05-4384   TCGA-05-4389 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-05-4390   TCGA-05-4396   TCGA-05-4397   TCGA-05-4398   TCGA-05-4402 
  "F8 MUTATED"   "F8 MUTATED" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-05-4403   TCGA-05-4405   TCGA-05-4415   TCGA-05-4417   TCGA-05-4418 
"F8 WILD-TYPE"   "F8 MUTATED" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-05-4420   TCGA-05-4422   TCGA-05-4424   TCGA-05-4425   TCGA-05-4426 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-05-4427   TCGA-05-4430   TCGA-05-4432   TCGA-05-4433   TCGA-05-4434 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-05-5420   TCGA-05-5423   TCGA-05-5425   TCGA-05-5428   TCGA-05-5429 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-05-5715   TCGA-35-3615   TCGA-35-4122   TCGA-35-4123   TCGA-35-5375 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-38-4625   TCGA-38-4626   TCGA-38-4627   TCGA-38-4628   TCGA-38-4629 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-38-4630   TCGA-38-4631   TCGA-38-4632   TCGA-38-6178   TCGA-44-2655 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-44-2656   TCGA-44-2657   TCGA-44-2659   TCGA-44-2661   TCGA-44-2662 
  "F8 MUTATED" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-44-2665   TCGA-44-2666   TCGA-44-2668   TCGA-44-3396   TCGA-44-3398 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-44-3918   TCGA-44-3919   TCGA-44-4112   TCGA-44-5643   TCGA-44-5645 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-44-6144   TCGA-44-6145   TCGA-44-6146   TCGA-44-6147   TCGA-44-6148 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-44-6774   TCGA-44-6775   TCGA-44-6776   TCGA-44-6777   TCGA-44-6778 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE"   "F8 MUTATED"   "F8 MUTATED" 
  TCGA-44-6779   TCGA-49-4486   TCGA-49-4487   TCGA-49-4488   TCGA-49-4490 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-49-4494   TCGA-49-4501   TCGA-49-4505   TCGA-49-4506   TCGA-49-4507 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-49-4510   TCGA-49-4512   TCGA-49-4514   TCGA-49-6742   TCGA-49-6743 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-49-6744   TCGA-49-6745   TCGA-50-5044   TCGA-50-5045   TCGA-50-5049 
"F8 WILD-TYPE"   "F8 MUTATED" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-50-5051   TCGA-50-5055   TCGA-50-5066   TCGA-50-5068   TCGA-50-5072 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-50-5930   TCGA-50-5931   TCGA-50-5932   TCGA-50-5933   TCGA-50-5935 
"F8 WILD-TYPE"   "F8 MUTATED" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-50-5936   TCGA-50-5939   TCGA-50-5941   TCGA-50-5942   TCGA-50-5944 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-50-5946   TCGA-50-6590   TCGA-50-6591   TCGA-50-6592   TCGA-50-6593 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-50-6594   TCGA-50-6595   TCGA-50-6597   TCGA-55-1592   TCGA-55-1594 
  "F8 MUTATED" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-55-1595   TCGA-55-1596   TCGA-55-5899   TCGA-55-6543   TCGA-55-6642 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-55-6712   TCGA-64-1676   TCGA-64-1677   TCGA-64-1678   TCGA-64-1680 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-64-5774   TCGA-64-5775   TCGA-64-5778   TCGA-64-5779   TCGA-64-5781 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-64-5815   TCGA-67-3770   TCGA-67-3771   TCGA-67-3772   TCGA-67-3773 
"F8 WILD-TYPE" "F8 WILD-TYPE"   "F8 MUTATED" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-67-3774   TCGA-67-6215   TCGA-67-6216   TCGA-67-6217   TCGA-71-6725 
  "F8 MUTATED" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-73-4658   TCGA-73-4659   TCGA-73-4662   TCGA-73-4666   TCGA-73-4668 
"F8 WILD-TYPE" "F8 WILD-TYPE"   "F8 MUTATED" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-73-4670   TCGA-73-4675   TCGA-73-4676   TCGA-73-4677   TCGA-86-6562 
  "F8 MUTATED" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-91-6828   TCGA-91-6829   TCGA-91-6831   TCGA-91-6835   TCGA-91-6836 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
[1] "hr=" "1"  
D81V2, continuous
              vv
clus           STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  F8 MUTATED          3        7         0         0          3          1
  F8 WILD-TYPE       34       46        11        23         30          5
              vv
clus           STAGE IV
  F8 MUTATED          1
  F8 WILD-TYPE        8
D81V3, multiclass
              vv
clus           T1 T2 T3 T4
  F8 MUTATED    3 10  1  1
  F8 WILD-TYPE 38 99 13  7
D81V4, multiclass
    clus
vv   F8 MUTATED F8 WILD-TYPE
  T1          3           38
  T2         10           99
  T3          1           13
  T4          1            7
              vv
clus           N0 N1 N2+N3
  F8 MUTATED   10  1     3
  F8 WILD-TYPE 85 36    32
D81V5, multiclass
       clus
vv      F8 MUTATED F8 WILD-TYPE
  N0            10           85
  N1             1           36
  N2+N3          3           32
              vv
clus            M0  M1  MX
  F8 MUTATED    12   1   2
  F8 WILD-TYPE 131   8  16
D81V6, multiclass
    clus
vv   F8 MUTATED F8 WILD-TYPE
  M0         12          131
  M1          1            8
  MX          2           16
D81V7, binary
              cls
clus            0  1
  F8 MUTATED   10  5
  F8 WILD-TYPE 83 74
[1] "tbl2"
              cls
clus           [,1] [,2]
  F8 MUTATED     10    5
  F8 WILD-TYPE   83   74
        clus
vv       F8 MUTATED F8 WILD-TYPE
  FEMALE         10           83
  MALE            5           74
D81V8, continuous
[1] "Remove cluster labels:" "F8 MUTATED"            
clus
  F8 MUTATED F8 WILD-TYPE 
           1           11 
  TCGA-35-4122   TCGA-35-4123   TCGA-35-5375   TCGA-64-1677   TCGA-64-5778 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-71-6725   TCGA-73-4659   TCGA-73-4666   TCGA-73-4668   TCGA-73-4676 
"F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" "F8 WILD-TYPE" 
  TCGA-75-5122 
"F8 WILD-TYPE" 
              vv
clus           LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  F8 MUTATED                            0                                 3
  F8 WILD-TYPE                          2                                36
              vv
clus           LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  F8 MUTATED                                                   11
  F8 WILD-TYPE                                                104
              vv
clus           LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  F8 MUTATED                                            0
  F8 WILD-TYPE                                          1
              vv
clus           LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  F8 MUTATED                                               0
  F8 WILD-TYPE                                             2
              vv
clus           LUNG CLEAR CELL ADENOCARCINOMA
  F8 MUTATED                                0
  F8 WILD-TYPE                              2
              vv
clus           LUNG MICROPAPILLARY ADENOCARCINOMA LUNG MUCINOUS ADENOCARCINOMA
  F8 MUTATED                                    0                            0
  F8 WILD-TYPE                                  2                            2
              vv
clus           LUNG PAPILLARY ADENOCARCINOMA
  F8 MUTATED                               0
  F8 WILD-TYPE                             4
              vv
clus           LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  F8 MUTATED                                               1
  F8 WILD-TYPE                                             0
              vv
clus           MUCINOUS (COLLOID) CARCINOMA
  F8 MUTATED                              0
  F8 WILD-TYPE                            2
D81V9, multiclass
D81V10, binary
              cls
clus             0   1
  F8 MUTATED     1  14
  F8 WILD-TYPE  13 144
[1] "tbl2"
              cls
clus           [,1] [,2]
  F8 MUTATED      1   14
  F8 WILD-TYPE   13  144
     clus
vv    F8 MUTATED F8 WILD-TYPE
  NO           1           13
  YES         14          144
D81V11, continuous
D81V12, continuous
              vv
clus            R0  R1  R2  RX
  F8 MUTATED     9   0   0   1
  F8 WILD-TYPE 106   6   4   8
D81V13, multiclass
    clus
vv   F8 MUTATED F8 WILD-TYPE
  R0          9          106
  R1          0            6
  R2          0            4
  RX          1            8

Clustering(82) Variable = CTRC MUTATION ANALYSIS
D82V1, survival
                sevent
clus2             0  1
  CTRC MUTATED    1  3
  CTRC WILD-TYPE 98 53
  CTRC MUTATED CTRC WILD-TYPE 
             4            151 
  CTRC MUTATED CTRC WILD-TYPE 
             3             53 
$`CTRC MUTATED`
TCGA-05-4396 TCGA-49-4488 TCGA-50-5045 TCGA-64-5781 
        9.96        28.57        71.47        51.25 

$`CTRC WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 
       15.02         4.96        28.96        22.03         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        97.74       120.79 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       14.73        21.93        46.98        13.15        44.94        24.36 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       42.08        42.77         3.19         8.09        37.15        38.24 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
       23.51         6.21        23.74        13.71        12.59        13.38 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
       10.78         9.93        27.78        11.90         5.42        12.16 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46         5.16        55.89        15.02        12.13        29.26 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       17.13        20.48        70.55        14.96        25.81        31.04 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12        18.64        29.00        25.12 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       22.55        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        87.98         2.04        42.90        28.41 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       28.44         0.99        20.02        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        5.69         4.60        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        26.27        15.35         4.27         1.32         5.39 
TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.25        12.36        10.62        41.33        10.16         2.60 
TCGA-91-6836 
       13.71 

  CTRC MUTATED CTRC WILD-TYPE 
          9.96           0.07 
  CTRC MUTATED CTRC WILD-TYPE 
         71.47         120.79 
  CTRC MUTATED CTRC WILD-TYPE 
         39.91          20.48 
[1] "10.0 - 71.5 (39.9)" "0.1 - 120.8 (20.5)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"CTRC WILD-TYPE" "CTRC WILD-TYPE"   "CTRC MUTATED" "CTRC WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"CTRC WILD-TYPE"   "CTRC MUTATED" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
  "CTRC MUTATED" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"CTRC WILD-TYPE"   "CTRC MUTATED" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"CTRC WILD-TYPE" "CTRC WILD-TYPE"   "CTRC MUTATED" "CTRC WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"CTRC WILD-TYPE"   "CTRC MUTATED" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
  "CTRC MUTATED" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"CTRC WILD-TYPE"   "CTRC MUTATED" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"CTRC WILD-TYPE" "CTRC WILD-TYPE"   "CTRC MUTATED" "CTRC WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"CTRC WILD-TYPE"   "CTRC MUTATED" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
  "CTRC MUTATED" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"CTRC WILD-TYPE"   "CTRC MUTATED" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
[1] "hr=" "1.2"
D82V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  CTRC MUTATED          2        1         0         0          0          1
  CTRC WILD-TYPE       35       52        11        23         33          5
                vv
clus             STAGE IV
  CTRC MUTATED          0
  CTRC WILD-TYPE        9
D82V3, multiclass
                vv
clus              T1  T2  T3  T4
  CTRC MUTATED     1   2   0   1
  CTRC WILD-TYPE  40 107  14   7
D82V4, multiclass
    clus
vv   CTRC MUTATED CTRC WILD-TYPE
  T1            1             40
  T2            2            107
  T3            0             14
  T4            1              7
                vv
clus             N0 N1 N2+N3
  CTRC MUTATED    2  2     0
  CTRC WILD-TYPE 93 35    35
D82V5, multiclass
       clus
vv      CTRC MUTATED CTRC WILD-TYPE
  N0               2             93
  N1               2             35
  N2+N3            0             35
                vv
clus              M0  M1  MX
  CTRC MUTATED     3   0   1
  CTRC WILD-TYPE 140   9  17
D82V6, multiclass
    clus
vv   CTRC MUTATED CTRC WILD-TYPE
  M0            3            140
  M1            0              9
  MX            1             17
D82V7, binary
                cls
clus              0  1
  CTRC MUTATED    3  1
  CTRC WILD-TYPE 90 78
[1] "tbl2"
                cls
clus             [,1] [,2]
  CTRC MUTATED      3    1
  CTRC WILD-TYPE   90   78
        clus
vv       CTRC MUTATED CTRC WILD-TYPE
  FEMALE            3             90
  MALE              1             78
D82V8, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  CTRC MUTATED                            0                                 2
  CTRC WILD-TYPE                          2                                37
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CTRC MUTATED                                                    2
  CTRC WILD-TYPE                                                113
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  CTRC MUTATED                                            0
  CTRC WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  CTRC MUTATED                                               0
  CTRC WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  CTRC MUTATED                                0
  CTRC WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  CTRC MUTATED                                    0
  CTRC WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  CTRC MUTATED                              0                             0
  CTRC WILD-TYPE                            2                             4
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  CTRC MUTATED                                               0
  CTRC WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  CTRC MUTATED                              0
  CTRC WILD-TYPE                            2
D82V9, multiclass
D82V10, binary
                cls
clus               0   1
  CTRC MUTATED     1   3
  CTRC WILD-TYPE  13 155
[1] "tbl2"
                cls
clus             [,1] [,2]
  CTRC MUTATED      1    3
  CTRC WILD-TYPE   13  155
     clus
vv    CTRC MUTATED CTRC WILD-TYPE
  NO             1             13
  YES            3            155
D82V11, continuous
[1] "Remove cluster labels:" "CTRC MUTATED"          
clus
  CTRC MUTATED CTRC WILD-TYPE 
             2            110 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-05-4382 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4384     TCGA-05-4389     TCGA-05-4390     TCGA-05-4397 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4405     TCGA-05-4410     TCGA-05-4415 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4417     TCGA-05-4418     TCGA-05-4420     TCGA-05-4422 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4424     TCGA-05-4425     TCGA-05-4426     TCGA-05-4427 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4430     TCGA-05-4432     TCGA-05-4433     TCGA-05-4434 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-5420     TCGA-05-5423     TCGA-05-5425     TCGA-05-5428 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4629     TCGA-38-4631     TCGA-38-4632 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2666     TCGA-44-2668     TCGA-44-3396 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-3398     TCGA-44-3918     TCGA-44-4112     TCGA-44-5643 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-5645     TCGA-44-6144     TCGA-44-6145     TCGA-44-6146 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4490     TCGA-49-4494     TCGA-49-4505 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-49-4506     TCGA-49-4507     TCGA-49-4510     TCGA-49-4514 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-49-6742     TCGA-49-6743     TCGA-49-6744     TCGA-49-6745 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-49-6767     TCGA-50-5051     TCGA-50-5072     TCGA-50-5931 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-6590 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-55-1596     TCGA-55-6543     TCGA-64-1676     TCGA-64-1677 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-64-1678     TCGA-64-1680     TCGA-64-5774     TCGA-64-5775 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-64-5778     TCGA-64-5779     TCGA-64-5815     TCGA-73-4658 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-75-5122 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-75-5125     TCGA-75-5126     TCGA-75-6203     TCGA-75-6206 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-75-6207     TCGA-75-6211     TCGA-80-5611     TCGA-91-6829 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-91-6835     TCGA-91-6836 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" 
D82V12, continuous
[1] "Remove cluster labels:" "CTRC MUTATED"          
clus
  CTRC MUTATED CTRC WILD-TYPE 
             2             66 
    TCGA-05-4384     TCGA-05-4390     TCGA-05-4405     TCGA-05-4410 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4424     TCGA-05-4427 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-4433     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-05-5428     TCGA-35-4122     TCGA-35-4123     TCGA-35-5375 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-38-4625     TCGA-38-4626     TCGA-44-2655     TCGA-44-2656 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2659     TCGA-44-2662     TCGA-44-2666 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5645     TCGA-44-6144     TCGA-44-6145 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-6147     TCGA-44-6148     TCGA-44-6774     TCGA-44-6775 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-44-6776     TCGA-44-6777     TCGA-44-6778     TCGA-44-6779 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-49-4486     TCGA-49-4494     TCGA-49-4505     TCGA-55-1592 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-55-1594     TCGA-55-1595     TCGA-55-1596     TCGA-55-5899 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-55-6642     TCGA-55-6712     TCGA-64-1677     TCGA-64-1678 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-64-5779     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" "CTRC WILD-TYPE" 
    TCGA-91-6829     TCGA-91-6836 
"CTRC WILD-TYPE" "CTRC WILD-TYPE" 
                vv
clus              R0  R1  R2  RX
  CTRC MUTATED     3   0   0   0
  CTRC WILD-TYPE 112   6   4   9
D82V13, multiclass
    clus
vv   CTRC MUTATED CTRC WILD-TYPE
  R0            3            112
  R1            0              6
  R2            0              4
  RX            0              9

Clustering(83) Variable = EPHB6 MUTATION ANALYSIS
D83V1, survival
                 sevent
clus2              0  1
  EPHB6 MUTATED   12  6
  EPHB6 WILD-TYPE 87 50
  EPHB6 MUTATED EPHB6 WILD-TYPE 
             18             137 
  EPHB6 MUTATED EPHB6 WILD-TYPE 
              6              50 
$`EPHB6 MUTATED`
TCGA-05-4396 TCGA-05-4417 TCGA-05-4420 TCGA-05-5428 TCGA-44-6145 TCGA-44-6776 
        9.96        14.93        29.95        22.03        10.78        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-49-4510 TCGA-49-6744 TCGA-50-5933 TCGA-50-5941 
       32.45        36.49        29.46        29.26        77.88        18.64 
TCGA-50-6590 TCGA-64-1676 TCGA-64-1677 TCGA-64-5781 TCGA-64-5815 TCGA-91-6836 
       42.31        56.81        20.65        51.25        28.44        13.71 

$`EPHB6 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4418 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
        8.98        12.00        30.02        21.99        26.01        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02        15.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
       28.96         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        97.74       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61        14.73        21.93        46.98 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        44.94        24.36        42.08        42.77         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        37.15        38.24        23.51         6.21        23.74 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
       13.71        12.59        13.38         9.93        27.78        11.90 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
        5.42        12.16        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6745 TCGA-50-5044 
        5.16        55.89        15.02        12.13        17.13        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        70.55        14.96        25.81        31.04        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 
        8.05         9.27         8.78        35.87        21.47         8.45 
TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 
       15.12        29.00        25.12        22.55         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        87.98         2.04        42.90        28.41 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99        20.02        18.84        14.04        12.66         5.69 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        4.60        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       26.27        15.35         4.27         1.32         5.39         1.25 
TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
       12.36        10.62        41.33        10.16         2.60 

  EPHB6 MUTATED EPHB6 WILD-TYPE 
           9.96            0.07 
  EPHB6 MUTATED EPHB6 WILD-TYPE 
          77.88          120.79 
  EPHB6 MUTATED EPHB6 WILD-TYPE 
          29.36           19.92 
[1] "10.0 - 77.9 (29.4)" "0.1 - 120.8 (19.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE"   "EPHB6 MUTATED" "EPHB6 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"EPHB6 WILD-TYPE"   "EPHB6 MUTATED" "EPHB6 WILD-TYPE"   "EPHB6 MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
  "EPHB6 MUTATED" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"EPHB6 WILD-TYPE"   "EPHB6 MUTATED" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE"   "EPHB6 MUTATED" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
  "EPHB6 MUTATED"   "EPHB6 MUTATED" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
  "EPHB6 MUTATED" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"EPHB6 WILD-TYPE"   "EPHB6 MUTATED" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE"   "EPHB6 MUTATED" "EPHB6 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE"   "EPHB6 MUTATED" "EPHB6 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE"   "EPHB6 MUTATED" "EPHB6 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"EPHB6 WILD-TYPE"   "EPHB6 MUTATED"   "EPHB6 MUTATED" "EPHB6 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"EPHB6 WILD-TYPE"   "EPHB6 MUTATED"   "EPHB6 MUTATED" "EPHB6 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE"   "EPHB6 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE"   "EPHB6 MUTATED" "EPHB6 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"EPHB6 WILD-TYPE"   "EPHB6 MUTATED" "EPHB6 WILD-TYPE"   "EPHB6 MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
  "EPHB6 MUTATED" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"EPHB6 WILD-TYPE"   "EPHB6 MUTATED" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE"   "EPHB6 MUTATED" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
  "EPHB6 MUTATED"   "EPHB6 MUTATED" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
  "EPHB6 MUTATED" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"EPHB6 WILD-TYPE"   "EPHB6 MUTATED" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE"   "EPHB6 MUTATED" "EPHB6 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE"   "EPHB6 MUTATED" "EPHB6 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE"   "EPHB6 MUTATED" "EPHB6 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"EPHB6 WILD-TYPE"   "EPHB6 MUTATED"   "EPHB6 MUTATED" "EPHB6 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"EPHB6 WILD-TYPE"   "EPHB6 MUTATED"   "EPHB6 MUTATED" "EPHB6 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE"   "EPHB6 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE"   "EPHB6 MUTATED" "EPHB6 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"EPHB6 WILD-TYPE"   "EPHB6 MUTATED" "EPHB6 WILD-TYPE"   "EPHB6 MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
  "EPHB6 MUTATED" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"EPHB6 WILD-TYPE"   "EPHB6 MUTATED" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE"   "EPHB6 MUTATED" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
  "EPHB6 MUTATED"   "EPHB6 MUTATED" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
  "EPHB6 MUTATED" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"EPHB6 WILD-TYPE"   "EPHB6 MUTATED" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE"   "EPHB6 MUTATED" "EPHB6 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE"   "EPHB6 MUTATED" "EPHB6 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE"   "EPHB6 MUTATED" "EPHB6 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"EPHB6 WILD-TYPE"   "EPHB6 MUTATED"   "EPHB6 MUTATED" "EPHB6 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"EPHB6 WILD-TYPE"   "EPHB6 MUTATED"   "EPHB6 MUTATED" "EPHB6 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE"   "EPHB6 MUTATED" 
[1] "hr=" "1.6"
D83V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  EPHB6 MUTATED          4        7         2         2          2          2
  EPHB6 WILD-TYPE       33       46         9        21         31          4
                 vv
clus              STAGE IV
  EPHB6 MUTATED          0
  EPHB6 WILD-TYPE        9
D83V3, multiclass
                 vv
clus              T1 T2 T3 T4
  EPHB6 MUTATED    5 12  0  2
  EPHB6 WILD-TYPE 36 97 14  6
D83V4, multiclass
    clus
vv   EPHB6 MUTATED EPHB6 WILD-TYPE
  T1             5              36
  T2            12              97
  T3             0              14
  T4             2               6
                 vv
clus              N0 N1 N2+N3
  EPHB6 MUTATED   10  5     3
  EPHB6 WILD-TYPE 85 32    32
D83V5, multiclass
       clus
vv      EPHB6 MUTATED EPHB6 WILD-TYPE
  N0               10              85
  N1                5              32
  N2+N3             3              32
                 vv
clus               M0  M1  MX
  EPHB6 MUTATED    14   0   5
  EPHB6 WILD-TYPE 129   9  13
D83V6, multiclass
    clus
vv   EPHB6 MUTATED EPHB6 WILD-TYPE
  M0            14             129
  M1             0               9
  MX             5              13
D83V7, binary
                 cls
clus               0  1
  EPHB6 MUTATED   11  8
  EPHB6 WILD-TYPE 82 71
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHB6 MUTATED     11    8
  EPHB6 WILD-TYPE   82   71
        clus
vv       EPHB6 MUTATED EPHB6 WILD-TYPE
  FEMALE            11              82
  MALE               8              71
D83V8, continuous
[1] "Remove cluster labels:" "EPHB6 MUTATED"         
clus
  EPHB6 MUTATED EPHB6 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-5778 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  EPHB6 MUTATED                            0                                 8
  EPHB6 WILD-TYPE                          2                                31
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  EPHB6 MUTATED                                                   11
  EPHB6 WILD-TYPE                                                104
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  EPHB6 MUTATED                                            0
  EPHB6 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  EPHB6 MUTATED                                               0
  EPHB6 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  EPHB6 MUTATED                                0
  EPHB6 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  EPHB6 MUTATED                                    0
  EPHB6 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  EPHB6 MUTATED                              0                             0
  EPHB6 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  EPHB6 MUTATED                                               0
  EPHB6 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  EPHB6 MUTATED                              0
  EPHB6 WILD-TYPE                            2
D83V9, multiclass
D83V10, binary
                 cls
clus                0   1
  EPHB6 MUTATED     2  17
  EPHB6 WILD-TYPE  12 141
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHB6 MUTATED      2   17
  EPHB6 WILD-TYPE   12  141
     clus
vv    EPHB6 MUTATED EPHB6 WILD-TYPE
  NO              2              12
  YES            17             141
D83V11, continuous
D83V12, continuous
                 vv
clus               R0  R1  R2  RX
  EPHB6 MUTATED    10   0   0   1
  EPHB6 WILD-TYPE 105   6   4   8
D83V13, multiclass
    clus
vv   EPHB6 MUTATED EPHB6 WILD-TYPE
  R0            10             105
  R1             0               6
  R2             0               4
  RX             1               8

Clustering(84) Variable = C12ORF74 MUTATION ANALYSIS
D84V1, survival
                    sevent
clus2                 0  1
  C12ORF74 MUTATED    1  0
  C12ORF74 WILD-TYPE 98 56
  C12ORF74 MUTATED C12ORF74 WILD-TYPE 
                 1                154 
  C12ORF74 MUTATED C12ORF74 WILD-TYPE 
                 0                 56 
$`C12ORF74 MUTATED`
TCGA-44-3919 
        6.21 

$`C12ORF74 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       21.99        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 
       15.02        15.02         4.96        28.96        22.03         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        97.74 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
      120.79        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61        14.73        21.93        46.98        13.15        44.94 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
       24.36        42.08        42.77         3.19         8.09        37.15 
TCGA-44-3398 TCGA-44-3918 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
       38.24        23.51        23.74        13.71        12.59        13.38 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
       10.78         9.93        27.78        11.90         5.42        12.16 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46         5.16        55.89        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       29.26        17.13        20.48        71.47        70.55        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81        31.04        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12        18.64 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
       29.00        25.12        22.55        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        87.98         2.04 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       42.90        28.41        51.25        28.44         0.99        20.02 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
       18.84        14.04        12.66         5.69         4.60        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        26.27        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 
        4.27         1.32         5.39         1.25        12.36        10.62 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33        10.16         2.60        13.71 

  C12ORF74 MUTATED C12ORF74 WILD-TYPE 
              6.21               0.07 
  C12ORF74 MUTATED C12ORF74 WILD-TYPE 
              6.21             120.79 
  C12ORF74 MUTATED C12ORF74 WILD-TYPE 
              6.21              21.06 
[1] "6.2 - 6.2 (6.2)"    "0.1 - 120.8 (21.1)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
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"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
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"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-44-2655 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE"   "C12ORF74 MUTATED" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5645 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-49-4486 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
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"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5044         TCGA-50-5045         TCGA-50-5049 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
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"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
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"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
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"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
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"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
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"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
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"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
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"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
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"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
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"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-55-6712         TCGA-64-1676         TCGA-64-1677 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1680         TCGA-64-5774 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-67-6217         TCGA-71-6725         TCGA-73-4658 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-73-4659         TCGA-73-4662         TCGA-73-4666 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-73-4668         TCGA-73-4670         TCGA-73-4675 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
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"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
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"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
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"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
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"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
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"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-44-2655 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
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"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
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"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
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"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE"   "C12ORF74 MUTATED" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5645 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-49-4486 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5044         TCGA-50-5045         TCGA-50-5049 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5051         TCGA-50-5055         TCGA-50-5066 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5068         TCGA-50-5072         TCGA-50-5930 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
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"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
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"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-55-6712         TCGA-64-1676         TCGA-64-1677 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
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"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
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        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
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"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
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        TCGA-67-6217         TCGA-71-6725         TCGA-73-4658 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
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"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
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"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
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"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
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"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
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"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
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"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
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"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
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"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
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        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-44-2655 
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"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
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"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE"   "C12ORF74 MUTATED" 
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"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
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"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
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"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
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"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
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"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
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"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5044         TCGA-50-5045         TCGA-50-5049 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5051         TCGA-50-5055         TCGA-50-5066 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5068         TCGA-50-5072         TCGA-50-5930 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5931         TCGA-50-5932         TCGA-50-5933 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5935         TCGA-50-5936         TCGA-50-5939 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5941         TCGA-50-5942         TCGA-50-5944 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5946         TCGA-50-6590         TCGA-50-6591 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-6592         TCGA-50-6593         TCGA-50-6594 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-6595         TCGA-50-6597         TCGA-55-1592 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-55-6712         TCGA-64-1676         TCGA-64-1677 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1680         TCGA-64-5774 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-67-6217         TCGA-71-6725         TCGA-73-4658 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-73-4659         TCGA-73-4662         TCGA-73-4666 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-73-4668         TCGA-73-4670         TCGA-73-4675 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-73-4676         TCGA-73-4677         TCGA-86-6562 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
[1] "Remove cluster labels:" "C12ORF74 MUTATED"      
clus
  C12ORF74 MUTATED C12ORF74 WILD-TYPE 
                 1                154 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-44-2655 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-4112 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5645         TCGA-44-6144 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6145         TCGA-44-6146         TCGA-44-6147 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6148         TCGA-44-6774         TCGA-44-6775 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6776         TCGA-44-6777         TCGA-44-6778 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6779         TCGA-49-4486         TCGA-49-4487 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-4488         TCGA-49-4490         TCGA-49-4494 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-4501         TCGA-49-4505         TCGA-49-4506 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-4507         TCGA-49-4510         TCGA-49-4512 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-4514         TCGA-49-6742         TCGA-49-6743 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-6744         TCGA-49-6745         TCGA-50-5044 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-6597         TCGA-55-1592         TCGA-55-1594 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-64-1680         TCGA-64-5774         TCGA-64-5775 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3770         TCGA-67-3771 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-67-6215         TCGA-67-6216         TCGA-67-6217 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-73-4677         TCGA-86-6562         TCGA-91-6828 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6831         TCGA-91-6835 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-91-6836 
"C12ORF74 WILD-TYPE" 
D84V2, continuous
[1] "Remove cluster labels:" "C12ORF74 MUTATED"      
clus
  C12ORF74 MUTATED C12ORF74 WILD-TYPE 
                 2                153 
        TCGA-05-4244         TCGA-05-4249         TCGA-05-4250 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4382         TCGA-05-4384         TCGA-05-4389 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4390         TCGA-05-4395         TCGA-05-4396 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4403         TCGA-05-4405         TCGA-05-4410 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-44-2655 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-4112 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5645         TCGA-44-6144 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6145         TCGA-44-6146         TCGA-44-6147 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6148         TCGA-44-6774         TCGA-44-6775 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6776         TCGA-44-6777         TCGA-44-6778 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6779         TCGA-49-4486         TCGA-49-4487 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-4488         TCGA-49-4490         TCGA-49-4494 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-4501         TCGA-49-4505         TCGA-49-4506 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-4507         TCGA-49-4510         TCGA-49-4512 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-4514         TCGA-49-6742         TCGA-49-6743 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-6744         TCGA-49-6745         TCGA-49-6767 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5044         TCGA-50-5045         TCGA-50-5049 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5051         TCGA-50-5055         TCGA-50-5066 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5068         TCGA-50-5072         TCGA-50-5930 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5931         TCGA-50-5932         TCGA-50-5933 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5935         TCGA-50-5936         TCGA-50-5939 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5941         TCGA-50-5942         TCGA-50-5944 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5946         TCGA-50-6590         TCGA-50-6591 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-6592         TCGA-50-6593         TCGA-50-6594 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-6595         TCGA-50-6597         TCGA-55-1594 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-6642         TCGA-64-1676 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-73-4677 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-86-6562         TCGA-91-6828         TCGA-91-6829 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  C12ORF74 MUTATED          1        1         0         0          1
  C12ORF74 WILD-TYPE       36       52        11        23         32
                    vv
clus                 STAGE IIIB STAGE IV
  C12ORF74 MUTATED            0        0
  C12ORF74 WILD-TYPE          6        9
D84V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  C12ORF74 MUTATED     1   0   2   0
  C12ORF74 WILD-TYPE  40 109  12   8
D84V4, multiclass
    clus
vv   C12ORF74 MUTATED C12ORF74 WILD-TYPE
  T1                1                 40
  T2                0                109
  T3                2                 12
  T4                0                  8
                    vv
clus                 N0 N1 N2+N3
  C12ORF74 MUTATED    2  0     1
  C12ORF74 WILD-TYPE 93 37    34
D84V5, multiclass
       clus
vv      C12ORF74 MUTATED C12ORF74 WILD-TYPE
  N0                   2                 93
  N1                   0                 37
  N2+N3                1                 34
                    vv
clus                  M0  M1  MX
  C12ORF74 MUTATED     3   0   0
  C12ORF74 WILD-TYPE 140   9  18
D84V6, multiclass
    clus
vv   C12ORF74 MUTATED C12ORF74 WILD-TYPE
  M0                3                140
  M1                0                  9
  MX                0                 18
D84V7, binary
                    cls
clus                  0  1
  C12ORF74 MUTATED    2  1
  C12ORF74 WILD-TYPE 91 78
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C12ORF74 MUTATED      2    1
  C12ORF74 WILD-TYPE   91   78
        clus
vv       C12ORF74 MUTATED C12ORF74 WILD-TYPE
  FEMALE                2                 91
  MALE                  1                 78
D84V8, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  C12ORF74 MUTATED                            0
  C12ORF74 WILD-TYPE                          2
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  C12ORF74 MUTATED                                   0
  C12ORF74 WILD-TYPE                                39
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  C12ORF74 MUTATED                                                    2
  C12ORF74 WILD-TYPE                                                113
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  C12ORF74 MUTATED                                            0
  C12ORF74 WILD-TYPE                                          1
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  C12ORF74 MUTATED                                               0
  C12ORF74 WILD-TYPE                                             2
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  C12ORF74 MUTATED                                0
  C12ORF74 WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  C12ORF74 MUTATED                                    0
  C12ORF74 WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  C12ORF74 MUTATED                              0                             1
  C12ORF74 WILD-TYPE                            2                             3
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  C12ORF74 MUTATED                                               0
  C12ORF74 WILD-TYPE                                             1
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  C12ORF74 MUTATED                              0
  C12ORF74 WILD-TYPE                            2
D84V9, multiclass
D84V10, binary
                    cls
clus                   0   1
  C12ORF74 MUTATED     0   3
  C12ORF74 WILD-TYPE  14 155
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C12ORF74 MUTATED      0    3
  C12ORF74 WILD-TYPE   14  155
     clus
vv    C12ORF74 MUTATED C12ORF74 WILD-TYPE
  NO                 0                 14
  YES                3                155
D84V11, continuous
[1] "Remove cluster labels:" "C12ORF74 MUTATED"      
clus
  C12ORF74 MUTATED C12ORF74 WILD-TYPE 
                 1                111 
        TCGA-05-4244         TCGA-05-4249         TCGA-05-4250 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4382         TCGA-05-4384         TCGA-05-4389 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4390         TCGA-05-4396         TCGA-05-4397 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4398         TCGA-05-4405         TCGA-05-4410 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-35-4122 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4629         TCGA-38-4631 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-38-4632         TCGA-44-2655         TCGA-44-2656 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2662 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-4112 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5645         TCGA-44-6144 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6145         TCGA-44-6146         TCGA-44-6148 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4490 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4505         TCGA-49-4506 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-4507         TCGA-49-4510         TCGA-49-4514 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-6745         TCGA-49-6767         TCGA-50-5051 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5931         TCGA-50-5939 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5941         TCGA-50-5942         TCGA-50-6590 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-6543         TCGA-64-1676 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1680 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4662 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4670 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-75-5122 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-75-5125         TCGA-75-6203         TCGA-75-6206 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-75-6207         TCGA-75-6211         TCGA-80-5611 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6835         TCGA-91-6836 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
D84V12, continuous
                    vv
clus                  R0  R1  R2  RX
  C12ORF74 MUTATED     2   0   1   0
  C12ORF74 WILD-TYPE 113   6   3   9
D84V13, multiclass
    clus
vv   C12ORF74 MUTATED C12ORF74 WILD-TYPE
  R0                2                113
  R1                0                  6
  R2                1                  3
  RX                0                  9

Clustering(85) Variable = DENND2A MUTATION ANALYSIS
D85V1, survival
                   sevent
clus2                0  1
  DENND2A MUTATED    4  5
  DENND2A WILD-TYPE 95 51
  DENND2A MUTATED DENND2A WILD-TYPE 
                9               146 
  DENND2A MUTATED DENND2A WILD-TYPE 
                5                51 
$`DENND2A MUTATED`
TCGA-05-4396 TCGA-05-4397 TCGA-05-4415 TCGA-05-4420 TCGA-50-6590 TCGA-55-1592 
        9.96        24.03         2.96        29.95        42.31        23.05 
TCGA-55-6712 TCGA-91-6828 TCGA-91-6836 
        0.79        10.62        13.71 

$`DENND2A WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        19.00        20.05        14.93         8.98 
TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
       12.00        30.02        21.99        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02        15.02         4.96        28.96 
TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
       22.03         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        97.74       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61        14.73        21.93        46.98 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        44.94        24.36        42.08        42.77         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        37.15        38.24        23.51         6.21        23.74 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       13.71        12.59        13.38        10.78         9.93        27.78 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
       11.90         5.42        12.16        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46         5.16 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       55.89        15.02        12.13        29.26        17.13        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        70.55        14.96        25.81        31.04        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12        18.64        29.00        25.12        22.55 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        87.98         2.04 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       42.90        28.41        51.25        28.44         0.99        20.02 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
       18.84        14.04        12.66         5.69         4.60        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        26.27        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6829 
        4.27         1.32         5.39         1.25        12.36        41.33 
TCGA-91-6831 TCGA-91-6835 
       10.16         2.60 

  DENND2A MUTATED DENND2A WILD-TYPE 
             0.79              0.07 
  DENND2A MUTATED DENND2A WILD-TYPE 
            42.31            120.79 
  DENND2A MUTATED DENND2A WILD-TYPE 
            13.71             21.06 
[1] "0.8 - 42.3 (13.7)"  "0.1 - 120.8 (21.1)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE"   "DENND2A MUTATED"   "DENND2A MUTATED" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
  "DENND2A MUTATED" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE"   "DENND2A MUTATED" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE"   "DENND2A MUTATED" "DENND2A WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"DENND2A WILD-TYPE"   "DENND2A MUTATED" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
  "DENND2A MUTATED" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE"   "DENND2A MUTATED" "DENND2A WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE"   "DENND2A MUTATED" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE"   "DENND2A MUTATED"   "DENND2A MUTATED" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
  "DENND2A MUTATED" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE"   "DENND2A MUTATED" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE"   "DENND2A MUTATED" "DENND2A WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"DENND2A WILD-TYPE"   "DENND2A MUTATED" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
  "DENND2A MUTATED" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE"   "DENND2A MUTATED" "DENND2A WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE"   "DENND2A MUTATED" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE"   "DENND2A MUTATED"   "DENND2A MUTATED" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
  "DENND2A MUTATED" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE"   "DENND2A MUTATED" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE"   "DENND2A MUTATED" "DENND2A WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"DENND2A WILD-TYPE"   "DENND2A MUTATED" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
  "DENND2A MUTATED" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE"   "DENND2A MUTATED" "DENND2A WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE"   "DENND2A MUTATED" 
[1] "hr=" "2.4"
D85V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  DENND2A MUTATED          2        3         1         1          0          2
  DENND2A WILD-TYPE       35       50        10        22         33          4
                   vv
clus                STAGE IV
  DENND2A MUTATED          0
  DENND2A WILD-TYPE        9
D85V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  DENND2A MUTATED     1   6   0   2
  DENND2A WILD-TYPE  40 103  14   6
D85V4, multiclass
    clus
vv   DENND2A MUTATED DENND2A WILD-TYPE
  T1               1                40
  T2               6               103
  T3               0                14
  T4               2                 6
                   vv
clus                N0 N1 N2+N3
  DENND2A MUTATED    5  3     1
  DENND2A WILD-TYPE 90 34    34
D85V5, multiclass
       clus
vv      DENND2A MUTATED DENND2A WILD-TYPE
  N0                  5                90
  N1                  3                34
  N2+N3               1                34
                   vv
clus                 M0  M1  MX
  DENND2A MUTATED     7   0   2
  DENND2A WILD-TYPE 136   9  16
D85V6, multiclass
    clus
vv   DENND2A MUTATED DENND2A WILD-TYPE
  M0               7               136
  M1               0                 9
  MX               2                16
D85V7, binary
                   cls
clus                 0  1
  DENND2A MUTATED    2  7
  DENND2A WILD-TYPE 91 72
[1] "tbl2"
                   cls
clus                [,1] [,2]
  DENND2A MUTATED      2    7
  DENND2A WILD-TYPE   91   72
        clus
vv       DENND2A MUTATED DENND2A WILD-TYPE
  FEMALE               2                91
  MALE                 7                72
D85V8, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  DENND2A MUTATED                            0
  DENND2A WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  DENND2A MUTATED                                   4
  DENND2A WILD-TYPE                                35
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  DENND2A MUTATED                                                    5
  DENND2A WILD-TYPE                                                110
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  DENND2A MUTATED                                            0
  DENND2A WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  DENND2A MUTATED                                               0
  DENND2A WILD-TYPE                                             2
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  DENND2A MUTATED                                0
  DENND2A WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  DENND2A MUTATED                                    0
  DENND2A WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  DENND2A MUTATED                              0                             0
  DENND2A WILD-TYPE                            2                             4
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  DENND2A MUTATED                                               0
  DENND2A WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  DENND2A MUTATED                              0
  DENND2A WILD-TYPE                            2
D85V9, multiclass
D85V10, binary
                   cls
clus                  0   1
  DENND2A MUTATED     0   9
  DENND2A WILD-TYPE  14 149
[1] "tbl2"
                   cls
clus                [,1] [,2]
  DENND2A MUTATED      0    9
  DENND2A WILD-TYPE   14  149
     clus
vv    DENND2A MUTATED DENND2A WILD-TYPE
  NO                0                14
  YES               9               149
D85V11, continuous
D85V12, continuous
                   vv
clus                 R0  R1  R2  RX
  DENND2A MUTATED     6   0   0   0
  DENND2A WILD-TYPE 109   6   4   9
D85V13, multiclass
    clus
vv   DENND2A MUTATED DENND2A WILD-TYPE
  R0               6               109
  R1               0                 6
  R2               0                 4
  RX               0                 9

Clustering(86) Variable = POF1B MUTATION ANALYSIS
D86V1, survival
                 sevent
clus2              0  1
  POF1B MUTATED    7  1
  POF1B WILD-TYPE 92 55
  POF1B MUTATED POF1B WILD-TYPE 
              8             147 
  POF1B MUTATED POF1B WILD-TYPE 
              1              55 
$`POF1B MUTATED`
TCGA-38-4626 TCGA-44-2655 TCGA-44-6147 TCGA-50-5066 TCGA-50-6590 TCGA-67-3774 
      120.79        21.93        27.78        31.04        42.31        12.66 
TCGA-71-6725 TCGA-73-4670 
        2.01         4.27 

$`POF1B WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       21.99        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 
       15.02        15.02         4.96        28.96        22.03         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        97.74 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       14.73        46.98        13.15        44.94        24.36        42.08 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       42.77         3.19         8.09        37.15        38.24        23.51 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21        23.74        13.71        12.59        13.38        10.78 
TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        9.93        11.90         5.42        12.16        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
        5.16        55.89        15.02        12.13        29.26        17.13 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 
       20.48        71.47        70.55        14.96        25.81        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12        18.64        29.00        25.12        22.55 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       87.98         2.04        42.90        28.41        51.25        28.44 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-6215 TCGA-67-6216 
        0.99        20.02        18.84        14.04         5.69         4.60 
TCGA-67-6217 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
       13.87        52.57        23.38        29.95        26.27        15.35 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 
        1.32         5.39         1.25        12.36        10.62        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       10.16         2.60        13.71 

  POF1B MUTATED POF1B WILD-TYPE 
           2.01            0.07 
  POF1B MUTATED POF1B WILD-TYPE 
         120.79           97.74 
  POF1B MUTATED POF1B WILD-TYPE 
         24.855          20.480 
[1] "2.0 - 120.8 (24.9)" "0.1 - 97.7 (20.5)" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
  "POF1B MUTATED" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
  "POF1B MUTATED" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE"   "POF1B MUTATED" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
  "POF1B MUTATED" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"POF1B WILD-TYPE" "POF1B WILD-TYPE"   "POF1B MUTATED" "POF1B WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE"   "POF1B MUTATED" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE"   "POF1B MUTATED" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"POF1B WILD-TYPE"   "POF1B MUTATED" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
  "POF1B MUTATED" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
  "POF1B MUTATED" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE"   "POF1B MUTATED" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
  "POF1B MUTATED" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"POF1B WILD-TYPE" "POF1B WILD-TYPE"   "POF1B MUTATED" "POF1B WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE"   "POF1B MUTATED" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE"   "POF1B MUTATED" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"POF1B WILD-TYPE"   "POF1B MUTATED" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
  "POF1B MUTATED" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
  "POF1B MUTATED" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE"   "POF1B MUTATED" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
  "POF1B MUTATED" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"POF1B WILD-TYPE" "POF1B WILD-TYPE"   "POF1B MUTATED" "POF1B WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE"   "POF1B MUTATED" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE"   "POF1B MUTATED" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"POF1B WILD-TYPE"   "POF1B MUTATED" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
[1] "hr=" "3.8"
D86V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  POF1B MUTATED          2        4         1         1          0          0
  POF1B WILD-TYPE       35       49        10        22         33          6
                 vv
clus              STAGE IV
  POF1B MUTATED          1
  POF1B WILD-TYPE        8
D86V3, multiclass
                 vv
clus               T1  T2  T3  T4
  POF1B MUTATED     2   7   0   0
  POF1B WILD-TYPE  39 102  14   8
D86V4, multiclass
    clus
vv   POF1B MUTATED POF1B WILD-TYPE
  T1             2              39
  T2             7             102
  T3             0              14
  T4             0               8
                 vv
clus              N0 N1 N2+N3
  POF1B MUTATED    7  1     0
  POF1B WILD-TYPE 88 36    35
D86V5, multiclass
       clus
vv      POF1B MUTATED POF1B WILD-TYPE
  N0                7              88
  N1                1              36
  N2+N3             0              35
                 vv
clus               M0  M1  MX
  POF1B MUTATED     8   1   0
  POF1B WILD-TYPE 135   8  18
D86V6, multiclass
    clus
vv   POF1B MUTATED POF1B WILD-TYPE
  M0             8             135
  M1             1               8
  MX             0              18
D86V7, binary
                 cls
clus               0  1
  POF1B MUTATED    7  2
  POF1B WILD-TYPE 86 77
[1] "tbl2"
                 cls
clus              [,1] [,2]
  POF1B MUTATED      7    2
  POF1B WILD-TYPE   86   77
        clus
vv       POF1B MUTATED POF1B WILD-TYPE
  FEMALE             7              86
  MALE               2              77
D86V8, continuous
[1] "Remove cluster labels:" "POF1B MUTATED"         
clus
  POF1B MUTATED POF1B WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-64-5778      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  POF1B MUTATED                            0                                 1
  POF1B WILD-TYPE                          2                                38
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  POF1B MUTATED                                                    7
  POF1B WILD-TYPE                                                108
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  POF1B MUTATED                                            0
  POF1B WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  POF1B MUTATED                                               0
  POF1B WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  POF1B MUTATED                                0
  POF1B WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  POF1B MUTATED                                    0
  POF1B WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  POF1B MUTATED                              0                             1
  POF1B WILD-TYPE                            2                             3
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  POF1B MUTATED                                               0
  POF1B WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  POF1B MUTATED                              0
  POF1B WILD-TYPE                            2
D86V9, multiclass
D86V10, binary
                 cls
clus                0   1
  POF1B MUTATED     0   9
  POF1B WILD-TYPE  14 149
[1] "tbl2"
                 cls
clus              [,1] [,2]
  POF1B MUTATED      0    9
  POF1B WILD-TYPE   14  149
     clus
vv    POF1B MUTATED POF1B WILD-TYPE
  NO              0              14
  YES             9             149
D86V11, continuous
D86V12, continuous
                 vv
clus               R0  R1  R2  RX
  POF1B MUTATED     5   0   0   2
  POF1B WILD-TYPE 110   6   4   7
D86V13, multiclass
    clus
vv   POF1B MUTATED POF1B WILD-TYPE
  R0             5             110
  R1             0               6
  R2             0               4
  RX             2               7

Clustering(87) Variable = TMTC1 MUTATION ANALYSIS
D87V1, survival
                 sevent
clus2              0  1
  TMTC1 MUTATED   15  5
  TMTC1 WILD-TYPE 84 51
  TMTC1 MUTATED TMTC1 WILD-TYPE 
             20             135 
  TMTC1 MUTATED TMTC1 WILD-TYPE 
              5              51 
$`TMTC1 MUTATED`
TCGA-05-4250 TCGA-05-4390 TCGA-05-4396 TCGA-05-4398 TCGA-05-4415 TCGA-05-4420 
        3.98        37.02         9.96        47.05         2.96        29.95 
TCGA-05-4425 TCGA-05-4427 TCGA-05-4430 TCGA-38-4625 TCGA-44-3918 TCGA-50-5045 
       21.99        26.01        25.02        97.74        23.51        71.47 
TCGA-50-5941 TCGA-50-5942 TCGA-64-5779 TCGA-64-5781 TCGA-67-3771 TCGA-73-4668 
       18.64        29.00        28.41        51.25        20.02        15.35 
TCGA-73-4670 TCGA-91-6829 
        4.27        41.33 

$`TMTC1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4397 TCGA-05-4402 
       50.07        19.92        14.01        45.01        24.03         8.02 
TCGA-05-4403 TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 TCGA-05-4422 TCGA-05-4424 
       19.00        20.05        14.93         8.98        12.00        30.02 
TCGA-05-4426 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       26.01        25.02        24.00        15.02        15.02         4.96 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
       28.96        22.03         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        5.95         8.68       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61        14.73        21.93        46.98 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        44.94        24.36        42.08        42.77         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
        8.09        37.15        38.24         6.21        23.74        13.71 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
       12.59        13.38        10.78         9.93        27.78        11.90 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42        12.16        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46         5.16        55.89 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5049 
       15.02        12.13        29.26        17.13        20.48        70.55 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81        31.04        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       25.12        22.55        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        87.98         2.04        42.90 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
       28.44         0.99        18.84        14.04        12.66         5.69 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        4.60        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 
       26.27         1.32         5.39         1.25        12.36        10.62 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       10.16         2.60        13.71 

  TMTC1 MUTATED TMTC1 WILD-TYPE 
           2.96            0.07 
  TMTC1 MUTATED TMTC1 WILD-TYPE 
          97.74          120.79 
  TMTC1 MUTATED TMTC1 WILD-TYPE 
         25.515          19.920 
[1] "3.0 - 97.7 (25.5)"  "0.1 - 120.8 (19.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "TMTC1 MUTATED"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED"   "TMTC1 MUTATED" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
  "TMTC1 MUTATED"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
  "TMTC1 MUTATED"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "TMTC1 MUTATED"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED"   "TMTC1 MUTATED" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
  "TMTC1 MUTATED"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
  "TMTC1 MUTATED"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "TMTC1 MUTATED"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED"   "TMTC1 MUTATED" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
  "TMTC1 MUTATED"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
  "TMTC1 MUTATED"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
[1] "hr=" "2"  
D87V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  TMTC1 MUTATED          4        6         0         3          4          3
  TMTC1 WILD-TYPE       33       47        11        20         29          3
                 vv
clus              STAGE IV
  TMTC1 MUTATED          2
  TMTC1 WILD-TYPE        7
D87V3, multiclass
                 vv
clus              T1 T2 T3 T4
  TMTC1 MUTATED    3 14  2  3
  TMTC1 WILD-TYPE 38 95 12  5
D87V4, multiclass
    clus
vv   TMTC1 MUTATED TMTC1 WILD-TYPE
  T1             3              38
  T2            14              95
  T3             2              12
  T4             3               5
                 vv
clus              N0 N1 N2+N3
  TMTC1 MUTATED   11  6     5
  TMTC1 WILD-TYPE 84 31    30
D87V5, multiclass
       clus
vv      TMTC1 MUTATED TMTC1 WILD-TYPE
  N0               11              84
  N1                6              31
  N2+N3             5              30
                 vv
clus               M0  M1  MX
  TMTC1 MUTATED    19   2   1
  TMTC1 WILD-TYPE 124   7  17
D87V6, multiclass
    clus
vv   TMTC1 MUTATED TMTC1 WILD-TYPE
  M0            19             124
  M1             2               7
  MX             1              17
D87V7, binary
                 cls
clus               0  1
  TMTC1 MUTATED   16  6
  TMTC1 WILD-TYPE 77 73
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TMTC1 MUTATED     16    6
  TMTC1 WILD-TYPE   77   73
        clus
vv       TMTC1 MUTATED TMTC1 WILD-TYPE
  FEMALE            16              77
  MALE               6              73
D87V8, continuous
[1] "Remove cluster labels:" "TMTC1 MUTATED"         
clus
  TMTC1 MUTATED TMTC1 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4676      TCGA-75-5122 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  TMTC1 MUTATED                            1                                 9
  TMTC1 WILD-TYPE                          1                                30
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  TMTC1 MUTATED                                                    9
  TMTC1 WILD-TYPE                                                106
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  TMTC1 MUTATED                                            0
  TMTC1 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  TMTC1 MUTATED                                               1
  TMTC1 WILD-TYPE                                             1
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  TMTC1 MUTATED                                0
  TMTC1 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  TMTC1 MUTATED                                    1
  TMTC1 WILD-TYPE                                  1
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  TMTC1 MUTATED                              0                             1
  TMTC1 WILD-TYPE                            2                             3
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  TMTC1 MUTATED                                               0
  TMTC1 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  TMTC1 MUTATED                              0
  TMTC1 WILD-TYPE                            2
D87V9, multiclass
D87V10, binary
                 cls
clus                0   1
  TMTC1 MUTATED     3  19
  TMTC1 WILD-TYPE  11 139
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TMTC1 MUTATED      3   19
  TMTC1 WILD-TYPE   11  139
     clus
vv    TMTC1 MUTATED TMTC1 WILD-TYPE
  NO              3              11
  YES            19             139
D87V11, continuous
D87V12, continuous
                 vv
clus              R0 R1 R2 RX
  TMTC1 MUTATED   17  1  2  0
  TMTC1 WILD-TYPE 98  5  2  9
D87V13, multiclass
    clus
vv   TMTC1 MUTATED TMTC1 WILD-TYPE
  R0            17              98
  R1             1               5
  R2             2               2
  RX             0               9

Clustering(88) Variable = OR2F2 MUTATION ANALYSIS
D88V1, survival
                 sevent
clus2              0  1
  OR2F2 MUTATED    6  0
  OR2F2 WILD-TYPE 93 56
  OR2F2 MUTATED OR2F2 WILD-TYPE 
              6             149 
  OR2F2 MUTATED OR2F2 WILD-TYPE 
              0              56 
$`OR2F2 MUTATED`
TCGA-05-4427 TCGA-44-2656 TCGA-44-3918 TCGA-49-6744 TCGA-50-5049 TCGA-55-5899 
       26.01        46.98        23.51        29.26        70.55         2.86 

$`OR2F2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       21.99        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 
       15.02         4.96        28.96        22.03         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        97.74       120.79 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       14.73        21.93        13.15        44.94        24.36        42.08 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 
       42.77         3.19         8.09        37.15        38.24         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
       23.74        13.71        12.59        13.38        10.78         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
       27.78        11.90         5.42        12.16        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6745 TCGA-50-5044 
        5.16        55.89        15.02        12.13        17.13        20.48 
TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       71.47        14.96        25.81        31.04        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12        18.64        29.00        25.12        22.55        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 
       23.05        38.73        48.62        45.17         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        87.98 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        2.04        42.90        28.41        51.25        28.44         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       20.02        18.84        14.04        12.66         5.69         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        26.27 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 
       15.35         4.27         1.32         5.39         1.25        12.36 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       10.62        41.33        10.16         2.60        13.71 

  OR2F2 MUTATED OR2F2 WILD-TYPE 
           2.86            0.07 
  OR2F2 MUTATED OR2F2 WILD-TYPE 
          70.55          120.79 
  OR2F2 MUTATED OR2F2 WILD-TYPE 
         27.635          20.050 
[1] "2.9 - 70.5 (27.6)"  "0.1 - 120.8 (20.1)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR2F2 MUTATED" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"OR2F2 WILD-TYPE"   "OR2F2 MUTATED" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE"   "OR2F2 MUTATED" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"OR2F2 WILD-TYPE"   "OR2F2 MUTATED" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"OR2F2 WILD-TYPE"   "OR2F2 MUTATED" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"OR2F2 WILD-TYPE"   "OR2F2 MUTATED" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR2F2 MUTATED" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"OR2F2 WILD-TYPE"   "OR2F2 MUTATED" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE"   "OR2F2 MUTATED" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"OR2F2 WILD-TYPE"   "OR2F2 MUTATED" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"OR2F2 WILD-TYPE"   "OR2F2 MUTATED" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"OR2F2 WILD-TYPE"   "OR2F2 MUTATED" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "OR2F2 MUTATED" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"OR2F2 WILD-TYPE"   "OR2F2 MUTATED" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE"   "OR2F2 MUTATED" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"OR2F2 WILD-TYPE"   "OR2F2 MUTATED" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"OR2F2 WILD-TYPE"   "OR2F2 MUTATED" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"OR2F2 WILD-TYPE"   "OR2F2 MUTATED" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D88V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  OR2F2 MUTATED          3        1         1         1          0          0
  OR2F2 WILD-TYPE       34       52        10        22         33          6
                 vv
clus              STAGE IV
  OR2F2 MUTATED          0
  OR2F2 WILD-TYPE        9
D88V3, multiclass
                 vv
clus               T1  T2  T3  T4
  OR2F2 MUTATED     2   4   0   0
  OR2F2 WILD-TYPE  39 105  14   8
D88V4, multiclass
    clus
vv   OR2F2 MUTATED OR2F2 WILD-TYPE
  T1             2              39
  T2             4             105
  T3             0              14
  T4             0               8
                 vv
clus              N0 N1 N2+N3
  OR2F2 MUTATED    3  3     0
  OR2F2 WILD-TYPE 92 34    35
D88V5, multiclass
       clus
vv      OR2F2 MUTATED OR2F2 WILD-TYPE
  N0                3              92
  N1                3              34
  N2+N3             0              35
                 vv
clus               M0  M1  MX
  OR2F2 MUTATED     5   0   1
  OR2F2 WILD-TYPE 138   9  17
D88V6, multiclass
    clus
vv   OR2F2 MUTATED OR2F2 WILD-TYPE
  M0             5             138
  M1             0               9
  MX             1              17
D88V7, binary
                 cls
clus               0  1
  OR2F2 MUTATED    3  3
  OR2F2 WILD-TYPE 90 76
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2F2 MUTATED      3    3
  OR2F2 WILD-TYPE   90   76
        clus
vv       OR2F2 MUTATED OR2F2 WILD-TYPE
  FEMALE             3              90
  MALE               3              76
D88V8, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR2F2 MUTATED                            0                                 2
  OR2F2 WILD-TYPE                          2                                37
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR2F2 MUTATED                                                    4
  OR2F2 WILD-TYPE                                                111
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR2F2 MUTATED                                            0
  OR2F2 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR2F2 MUTATED                                               0
  OR2F2 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  OR2F2 MUTATED                                0
  OR2F2 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  OR2F2 MUTATED                                    0
  OR2F2 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR2F2 MUTATED                              0                             0
  OR2F2 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR2F2 MUTATED                                               0
  OR2F2 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  OR2F2 MUTATED                              0
  OR2F2 WILD-TYPE                            2
D88V9, multiclass
D88V10, binary
                 cls
clus                0   1
  OR2F2 MUTATED     1   5
  OR2F2 WILD-TYPE  13 153
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2F2 MUTATED      1    5
  OR2F2 WILD-TYPE   13  153
     clus
vv    OR2F2 MUTATED OR2F2 WILD-TYPE
  NO              1              13
  YES             5             153
D88V11, continuous
D88V12, continuous
                 vv
clus               R0  R1  R2  RX
  OR2F2 MUTATED     4   0   0   0
  OR2F2 WILD-TYPE 111   6   4   9
D88V13, multiclass
    clus
vv   OR2F2 MUTATED OR2F2 WILD-TYPE
  R0             4             111
  R1             0               6
  R2             0               4
  RX             0               9

Clustering(89) Variable = SPATA18 MUTATION ANALYSIS
D89V1, survival
                   sevent
clus2                0  1
  SPATA18 MUTATED    6  2
  SPATA18 WILD-TYPE 93 54
  SPATA18 MUTATED SPATA18 WILD-TYPE 
                8               147 
  SPATA18 MUTATED SPATA18 WILD-TYPE 
                2                54 
$`SPATA18 MUTATED`
TCGA-05-4398 TCGA-05-4427 TCGA-44-2659 TCGA-49-6742 TCGA-49-6744 TCGA-50-5932 
       47.05        26.01        44.94        15.02        29.26        35.87 
TCGA-50-5941 TCGA-55-1592 
       18.64        23.05 

$`SPATA18 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
        9.96        24.03         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        4.96        28.96        22.03         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61        14.73 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       21.93        46.98        13.15        24.36        42.08        42.77 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        37.15        38.24        23.51         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
       23.74        13.71        12.59        13.38        10.78         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
       27.78        11.90         5.42        12.16        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
        5.16        55.89        12.13        17.13        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       70.55        14.96        25.81        31.04        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        9.27         8.78        77.88        21.47         8.45        15.12 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
       29.00        25.12        22.55        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 
       11.05        12.16         6.21        33.37        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        87.98         2.04        42.90 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       28.41        51.25        28.44         0.99        20.02        18.84 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
       14.04        12.66         5.69         4.60        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        26.27        15.35         4.27 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 
        1.32         5.39         1.25        12.36        10.62        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       10.16         2.60        13.71 

  SPATA18 MUTATED SPATA18 WILD-TYPE 
            15.02              0.07 
  SPATA18 MUTATED SPATA18 WILD-TYPE 
            47.05            120.79 
  SPATA18 MUTATED SPATA18 WILD-TYPE 
           27.635            20.050 
[1] "15.0 - 47.0 (27.6)" "0.1 - 120.8 (20.1)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
  "SPATA18 MUTATED" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "SPATA18 MUTATED" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE"   "SPATA18 MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE"   "SPATA18 MUTATED" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"SPATA18 WILD-TYPE"   "SPATA18 MUTATED" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"SPATA18 WILD-TYPE"   "SPATA18 MUTATED" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE"   "SPATA18 MUTATED" "SPATA18 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"SPATA18 WILD-TYPE"   "SPATA18 MUTATED" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
  "SPATA18 MUTATED" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "SPATA18 MUTATED" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE"   "SPATA18 MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE"   "SPATA18 MUTATED" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"SPATA18 WILD-TYPE"   "SPATA18 MUTATED" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"SPATA18 WILD-TYPE"   "SPATA18 MUTATED" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE"   "SPATA18 MUTATED" "SPATA18 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"SPATA18 WILD-TYPE"   "SPATA18 MUTATED" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
  "SPATA18 MUTATED" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "SPATA18 MUTATED" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE"   "SPATA18 MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE"   "SPATA18 MUTATED" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"SPATA18 WILD-TYPE"   "SPATA18 MUTATED" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"SPATA18 WILD-TYPE"   "SPATA18 MUTATED" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE"   "SPATA18 MUTATED" "SPATA18 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"SPATA18 WILD-TYPE"   "SPATA18 MUTATED" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
[1] "hr=" "1.8"
D89V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  SPATA18 MUTATED          1        0         1         4          1          1
  SPATA18 WILD-TYPE       36       53        10        19         32          5
                   vv
clus                STAGE IV
  SPATA18 MUTATED          0
  SPATA18 WILD-TYPE        9
D89V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  SPATA18 MUTATED     1   6   0   1
  SPATA18 WILD-TYPE  40 103  14   7
D89V4, multiclass
    clus
vv   SPATA18 MUTATED SPATA18 WILD-TYPE
  T1               1                40
  T2               6               103
  T3               0                14
  T4               1                 7
                   vv
clus                N0 N1 N2+N3
  SPATA18 MUTATED    1  5     2
  SPATA18 WILD-TYPE 94 32    33
D89V5, multiclass
       clus
vv      SPATA18 MUTATED SPATA18 WILD-TYPE
  N0                  1                94
  N1                  5                32
  N2+N3               2                33
                   vv
clus                 M0  M1  MX
  SPATA18 MUTATED     7   0   1
  SPATA18 WILD-TYPE 136   9  17
D89V6, multiclass
    clus
vv   SPATA18 MUTATED SPATA18 WILD-TYPE
  M0               7               136
  M1               0                 9
  MX               1                17
D89V7, binary
                   cls
clus                 0  1
  SPATA18 MUTATED    5  3
  SPATA18 WILD-TYPE 88 76
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SPATA18 MUTATED      5    3
  SPATA18 WILD-TYPE   88   76
        clus
vv       SPATA18 MUTATED SPATA18 WILD-TYPE
  FEMALE               5                88
  MALE                 3                76
D89V8, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  SPATA18 MUTATED                            0
  SPATA18 WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  SPATA18 MUTATED                                   3
  SPATA18 WILD-TYPE                                36
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SPATA18 MUTATED                                                    4
  SPATA18 WILD-TYPE                                                111
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  SPATA18 MUTATED                                            0
  SPATA18 WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  SPATA18 MUTATED                                               0
  SPATA18 WILD-TYPE                                             2
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  SPATA18 MUTATED                                0
  SPATA18 WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  SPATA18 MUTATED                                    0
  SPATA18 WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  SPATA18 MUTATED                              0                             0
  SPATA18 WILD-TYPE                            2                             4
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  SPATA18 MUTATED                                               0
  SPATA18 WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  SPATA18 MUTATED                              1
  SPATA18 WILD-TYPE                            1
D89V9, multiclass
D89V10, binary
                   cls
clus                  0   1
  SPATA18 MUTATED     0   8
  SPATA18 WILD-TYPE  14 150
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SPATA18 MUTATED      0    8
  SPATA18 WILD-TYPE   14  150
     clus
vv    SPATA18 MUTATED SPATA18 WILD-TYPE
  NO                0                14
  YES               8               150
D89V11, continuous
D89V12, continuous
                   vv
clus                 R0  R1  R2  RX
  SPATA18 MUTATED     6   0   0   0
  SPATA18 WILD-TYPE 109   6   4   9
D89V13, multiclass
    clus
vv   SPATA18 MUTATED SPATA18 WILD-TYPE
  R0               6               109
  R1               0                 6
  R2               0                 4
  RX               0                 9

Clustering(90) Variable = FSCB MUTATION ANALYSIS
D90V1, survival
                sevent
clus2             0  1
  FSCB MUTATED    9  5
  FSCB WILD-TYPE 90 51
  FSCB MUTATED FSCB WILD-TYPE 
            14            141 
  FSCB MUTATED FSCB WILD-TYPE 
             5             51 
$`FSCB MUTATED`
TCGA-05-4382 TCGA-05-4398 TCGA-05-4432 TCGA-44-4112 TCGA-44-6147 TCGA-44-6774 
       19.92        47.05        25.02        23.74        27.78         5.42 
TCGA-44-6778 TCGA-49-4507 TCGA-50-5045 TCGA-50-5049 TCGA-50-5072 TCGA-55-1596 
       36.49         8.81        71.47        70.55         8.05        45.17 
TCGA-64-5781 TCGA-91-6829 
       51.25        41.33 

$`FSCB WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 
       50.07         3.98        14.01        45.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       26.01        25.02        24.00        15.02        15.02         4.96 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
       28.96        22.03         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        97.74       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61        14.73        21.93 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       46.98        13.15        44.94        24.36        42.08        42.77 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        37.15        38.24        23.51         6.21 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 
       13.71        12.59        13.38        10.78         9.93        11.90 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       12.16        63.72        32.45        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46         5.16        55.89        15.02        12.13        29.26 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       17.13        20.48        14.96        25.81        31.04        49.28 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12        18.64        29.00        25.12        22.55        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       23.05        38.73        48.62         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        87.98 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
        2.04        42.90        28.41        28.44         0.99        20.02 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
       18.84        14.04        12.66         5.69         4.60        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        26.27        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 
        4.27         1.32         5.39         1.25        12.36        10.62 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       10.16         2.60        13.71 

  FSCB MUTATED FSCB WILD-TYPE 
          5.42           0.07 
  FSCB MUTATED FSCB WILD-TYPE 
         71.47         120.79 
  FSCB MUTATED FSCB WILD-TYPE 
        32.135         20.020 
[1] "5.4 - 71.5 (32.1)"  "0.1 - 120.8 (20.0)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"FSCB WILD-TYPE" "FSCB WILD-TYPE"   "FSCB MUTATED" "FSCB WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
  "FSCB MUTATED" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"FSCB WILD-TYPE" "FSCB WILD-TYPE"   "FSCB MUTATED" "FSCB WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"FSCB WILD-TYPE"   "FSCB MUTATED" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE"   "FSCB MUTATED" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"FSCB WILD-TYPE"   "FSCB MUTATED" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"FSCB WILD-TYPE"   "FSCB MUTATED" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE"   "FSCB MUTATED" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
  "FSCB MUTATED"   "FSCB MUTATED" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"FSCB WILD-TYPE" "FSCB WILD-TYPE"   "FSCB MUTATED" "FSCB WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
  "FSCB MUTATED" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"FSCB WILD-TYPE"   "FSCB MUTATED" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE"   "FSCB MUTATED" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"FSCB WILD-TYPE" "FSCB WILD-TYPE"   "FSCB MUTATED" "FSCB WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
  "FSCB MUTATED" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"FSCB WILD-TYPE" "FSCB WILD-TYPE"   "FSCB MUTATED" "FSCB WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"FSCB WILD-TYPE"   "FSCB MUTATED" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE"   "FSCB MUTATED" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"FSCB WILD-TYPE"   "FSCB MUTATED" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"FSCB WILD-TYPE"   "FSCB MUTATED" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE"   "FSCB MUTATED" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
  "FSCB MUTATED"   "FSCB MUTATED" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"FSCB WILD-TYPE" "FSCB WILD-TYPE"   "FSCB MUTATED" "FSCB WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
  "FSCB MUTATED" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"FSCB WILD-TYPE"   "FSCB MUTATED" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE"   "FSCB MUTATED" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"FSCB WILD-TYPE" "FSCB WILD-TYPE"   "FSCB MUTATED" "FSCB WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
  "FSCB MUTATED" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"FSCB WILD-TYPE" "FSCB WILD-TYPE"   "FSCB MUTATED" "FSCB WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"FSCB WILD-TYPE"   "FSCB MUTATED" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE"   "FSCB MUTATED" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"FSCB WILD-TYPE"   "FSCB MUTATED" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"FSCB WILD-TYPE"   "FSCB MUTATED" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE"   "FSCB MUTATED" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
  "FSCB MUTATED"   "FSCB MUTATED" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"FSCB WILD-TYPE" "FSCB WILD-TYPE"   "FSCB MUTATED" "FSCB WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
  "FSCB MUTATED" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"FSCB WILD-TYPE"   "FSCB MUTATED" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE"   "FSCB MUTATED" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
[1] "hr=" "1.5"
D90V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  FSCB MUTATED          4        5         0         2          3          1
  FSCB WILD-TYPE       33       48        11        21         30          5
                vv
clus             STAGE IV
  FSCB MUTATED          0
  FSCB WILD-TYPE        9
D90V3, multiclass
                vv
clus             T1 T2 T3 T4
  FSCB MUTATED    3 10  1  1
  FSCB WILD-TYPE 38 99 13  7
D90V4, multiclass
    clus
vv   FSCB MUTATED FSCB WILD-TYPE
  T1            3             38
  T2           10             99
  T3            1             13
  T4            1              7
                vv
clus             N0 N1 N2+N3
  FSCB MUTATED    7  4     3
  FSCB WILD-TYPE 88 33    32
D90V5, multiclass
       clus
vv      FSCB MUTATED FSCB WILD-TYPE
  N0               7             88
  N1               4             33
  N2+N3            3             32
                vv
clus              M0  M1  MX
  FSCB MUTATED    13   0   2
  FSCB WILD-TYPE 130   9  16
D90V6, multiclass
    clus
vv   FSCB MUTATED FSCB WILD-TYPE
  M0           13            130
  M1            0              9
  MX            2             16
D90V7, binary
                cls
clus              0  1
  FSCB MUTATED    7  8
  FSCB WILD-TYPE 86 71
[1] "tbl2"
                cls
clus             [,1] [,2]
  FSCB MUTATED      7    8
  FSCB WILD-TYPE   86   71
        clus
vv       FSCB MUTATED FSCB WILD-TYPE
  FEMALE            7             86
  MALE              8             71
D90V8, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  FSCB MUTATED                            0                                 4
  FSCB WILD-TYPE                          2                                35
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  FSCB MUTATED                                                    9
  FSCB WILD-TYPE                                                106
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  FSCB MUTATED                                            0
  FSCB WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  FSCB MUTATED                                               1
  FSCB WILD-TYPE                                             1
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  FSCB MUTATED                                0
  FSCB WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  FSCB MUTATED                                    0
  FSCB WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  FSCB MUTATED                              0                             0
  FSCB WILD-TYPE                            2                             4
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  FSCB MUTATED                                               1
  FSCB WILD-TYPE                                             0
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  FSCB MUTATED                              0
  FSCB WILD-TYPE                            2
D90V9, multiclass
D90V10, binary
                cls
clus               0   1
  FSCB MUTATED     4  11
  FSCB WILD-TYPE  10 147
[1] "tbl2"
                cls
clus             [,1] [,2]
  FSCB MUTATED      4   11
  FSCB WILD-TYPE   10  147
     clus
vv    FSCB MUTATED FSCB WILD-TYPE
  NO             4             10
  YES           11            147
D90V11, continuous
D90V12, continuous
                vv
clus              R0  R1  R2  RX
  FSCB MUTATED     9   0   0   0
  FSCB WILD-TYPE 106   6   4   9
D90V13, multiclass
    clus
vv   FSCB MUTATED FSCB WILD-TYPE
  R0            9            106
  R1            0              6
  R2            0              4
  RX            0              9

Clustering(91) Variable = TBX21 MUTATION ANALYSIS
D91V1, survival
                 sevent
clus2              0  1
  TBX21 MUTATED    4  2
  TBX21 WILD-TYPE 95 54
  TBX21 MUTATED TBX21 WILD-TYPE 
              6             149 
  TBX21 MUTATED TBX21 WILD-TYPE 
              2              54 
$`TBX21 MUTATED`
TCGA-05-4427 TCGA-35-4122 TCGA-38-4628 TCGA-44-4112 TCGA-49-6743 TCGA-67-3771 
       26.01         7.36        49.02        23.74        12.13        20.02 

$`TBX21 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       21.99        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 
       15.02         4.96        28.96        22.03         0.99         2.04 
TCGA-35-3615 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        0.46         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61        14.73        21.93 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       46.98        13.15        44.94        24.36        42.08        42.77 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        37.15        38.24        23.51         6.21 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       13.71        12.59        13.38        10.78         9.93        27.78 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
       11.90         5.42        12.16        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46         5.16 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       55.89        15.02        29.26        17.13        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       70.55        14.96        25.81        31.04        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12        18.64        29.00        25.12        22.55        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       87.98         2.04        42.90        28.41        51.25        28.44 
TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        0.99        18.84        14.04        12.66         5.69         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        26.27 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 
       15.35         4.27         1.32         5.39         1.25        12.36 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       10.62        41.33        10.16         2.60        13.71 

  TBX21 MUTATED TBX21 WILD-TYPE 
           7.36            0.07 
  TBX21 MUTATED TBX21 WILD-TYPE 
          49.02          120.79 
  TBX21 MUTATED TBX21 WILD-TYPE 
          21.88           20.65 
[1] "7.4 - 49.0 (21.9)"  "0.1 - 120.8 (20.6)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "TBX21 MUTATED" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
  "TBX21 MUTATED" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE"   "TBX21 MUTATED" "TBX21 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"TBX21 WILD-TYPE"   "TBX21 MUTATED" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
  "TBX21 MUTATED" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "TBX21 MUTATED" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "TBX21 MUTATED" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
  "TBX21 MUTATED" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE"   "TBX21 MUTATED" "TBX21 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"TBX21 WILD-TYPE"   "TBX21 MUTATED" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
  "TBX21 MUTATED" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "TBX21 MUTATED" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "TBX21 MUTATED" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
  "TBX21 MUTATED" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE"   "TBX21 MUTATED" "TBX21 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"TBX21 WILD-TYPE"   "TBX21 MUTATED" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
  "TBX21 MUTATED" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "TBX21 MUTATED" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
[1] "hr=" "1"  
D91V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  TBX21 MUTATED          2        1         0         3          1          0
  TBX21 WILD-TYPE       35       52        11        20         32          6
                 vv
clus              STAGE IV
  TBX21 MUTATED          0
  TBX21 WILD-TYPE        9
D91V3, multiclass
                 vv
clus               T1  T2  T3  T4
  TBX21 MUTATED     3   3   1   0
  TBX21 WILD-TYPE  38 106  13   8
D91V4, multiclass
    clus
vv   TBX21 MUTATED TBX21 WILD-TYPE
  T1             3              38
  T2             3             106
  T3             1              13
  T4             0               8
                 vv
clus              N0 N1 N2+N3
  TBX21 MUTATED    4  2     1
  TBX21 WILD-TYPE 91 35    34
D91V5, multiclass
       clus
vv      TBX21 MUTATED TBX21 WILD-TYPE
  N0                4              91
  N1                2              35
  N2+N3             1              34
                 vv
clus               M0  M1  MX
  TBX21 MUTATED     5   0   2
  TBX21 WILD-TYPE 138   9  16
D91V6, multiclass
    clus
vv   TBX21 MUTATED TBX21 WILD-TYPE
  M0             5             138
  M1             0               9
  MX             2              16
D91V7, binary
                 cls
clus               0  1
  TBX21 MUTATED    6  1
  TBX21 WILD-TYPE 87 78
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TBX21 MUTATED      6    1
  TBX21 WILD-TYPE   87   78
        clus
vv       TBX21 MUTATED TBX21 WILD-TYPE
  FEMALE             6              87
  MALE               1              78
D91V8, continuous
[1] "Remove cluster labels:" "TBX21 MUTATED"         
clus
  TBX21 MUTATED TBX21 WILD-TYPE 
              1              11 
     TCGA-35-4123      TCGA-35-5375      TCGA-64-1677      TCGA-64-5778 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"TBX21 WILD-TYPE" "TBX21 WILD-TYPE" "TBX21 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  TBX21 MUTATED                            0                                 1
  TBX21 WILD-TYPE                          2                                38
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  TBX21 MUTATED                                                    5
  TBX21 WILD-TYPE                                                110
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  TBX21 MUTATED                                            0
  TBX21 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  TBX21 MUTATED                                               0
  TBX21 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  TBX21 MUTATED                                1
  TBX21 WILD-TYPE                              1
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  TBX21 MUTATED                                    0
  TBX21 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  TBX21 MUTATED                              0                             0
  TBX21 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  TBX21 MUTATED                                               0
  TBX21 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  TBX21 MUTATED                              0
  TBX21 WILD-TYPE                            2
D91V9, multiclass
D91V10, binary
                 cls
clus                0   1
  TBX21 MUTATED     0   7
  TBX21 WILD-TYPE  14 151
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TBX21 MUTATED      0    7
  TBX21 WILD-TYPE   14  151
     clus
vv    TBX21 MUTATED TBX21 WILD-TYPE
  NO              0              14
  YES             7             151
D91V11, continuous
D91V12, continuous
                 vv
clus               R0  R1  R2  RX
  TBX21 MUTATED     6   0   0   0
  TBX21 WILD-TYPE 109   6   4   9
D91V13, multiclass
    clus
vv   TBX21 MUTATED TBX21 WILD-TYPE
  R0             6             109
  R1             0               6
  R2             0               4
  RX             0               9

Clustering(92) Variable = CDH6 MUTATION ANALYSIS
D92V1, survival
                sevent
clus2             0  1
  CDH6 MUTATED   10  6
  CDH6 WILD-TYPE 89 50
  CDH6 MUTATED CDH6 WILD-TYPE 
            16            139 
  CDH6 MUTATED CDH6 WILD-TYPE 
             6             50 
$`CDH6 MUTATED`
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4427 TCGA-35-5375 TCGA-38-4629 
        8.02        20.05         2.96        26.01         8.68        28.37 
TCGA-44-2656 TCGA-44-2668 TCGA-44-3918 TCGA-44-4112 TCGA-44-6145 TCGA-44-6147 
       46.98         8.09        23.51        23.74        10.78        27.78 
TCGA-49-6742 TCGA-55-5899 TCGA-91-6829 TCGA-91-6835 
       15.02         2.86        41.33         2.60 

$`CDH6 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4403 TCGA-05-4417 TCGA-05-4418 
        9.96        24.03        47.05        19.00        14.93         8.98 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4430 
       29.95        12.00        30.02        21.99        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02        15.02         4.96        28.96 
TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
       22.03         0.99         2.04         0.46         7.36         5.95 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 
       97.74       120.79        37.71        49.02        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       44.61        14.73        21.93        13.15        44.94        24.36 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 
       42.08        42.77         3.19        37.15        38.24         6.21 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 
       13.71        12.59        13.38         9.93        11.90         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
       12.16        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 
       32.84         8.81        29.46         5.16        55.89        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       29.26        17.13        20.48        71.47        70.55        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81        31.04        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12        18.64 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
       29.00        25.12        22.55        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       48.62        45.17         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        87.98         2.04        42.90 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       28.41        51.25        28.44         0.99        20.02        18.84 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
       14.04        12.66         5.69         4.60        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        26.27        15.35         4.27 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6831 
        1.32         5.39         1.25        12.36        10.62        10.16 
TCGA-91-6836 
       13.71 

  CDH6 MUTATED CDH6 WILD-TYPE 
          2.60           0.07 
  CDH6 MUTATED CDH6 WILD-TYPE 
         46.98         120.79 
  CDH6 MUTATED CDH6 WILD-TYPE 
        17.535         21.470 
[1] "2.6 - 47.0 (17.5)"  "0.1 - 120.8 (21.5)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"CDH6 WILD-TYPE"   "CDH6 MUTATED" "CDH6 WILD-TYPE"   "CDH6 MUTATED" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
  "CDH6 MUTATED" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "CDH6 MUTATED" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE"   "CDH6 MUTATED" "CDH6 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE"   "CDH6 MUTATED" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"CDH6 WILD-TYPE"   "CDH6 MUTATED" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
  "CDH6 MUTATED" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE"   "CDH6 MUTATED" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"CDH6 WILD-TYPE"   "CDH6 MUTATED" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"CDH6 WILD-TYPE"   "CDH6 MUTATED" "CDH6 WILD-TYPE"   "CDH6 MUTATED" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE"   "CDH6 MUTATED" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"CDH6 WILD-TYPE"   "CDH6 MUTATED" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE"   "CDH6 MUTATED" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"CDH6 WILD-TYPE"   "CDH6 MUTATED" "CDH6 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"CDH6 WILD-TYPE"   "CDH6 MUTATED" "CDH6 WILD-TYPE"   "CDH6 MUTATED" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
  "CDH6 MUTATED" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "CDH6 MUTATED" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE"   "CDH6 MUTATED" "CDH6 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE"   "CDH6 MUTATED" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"CDH6 WILD-TYPE"   "CDH6 MUTATED" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
  "CDH6 MUTATED" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE"   "CDH6 MUTATED" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"CDH6 WILD-TYPE"   "CDH6 MUTATED" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"CDH6 WILD-TYPE"   "CDH6 MUTATED" "CDH6 WILD-TYPE"   "CDH6 MUTATED" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE"   "CDH6 MUTATED" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"CDH6 WILD-TYPE"   "CDH6 MUTATED" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE"   "CDH6 MUTATED" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"CDH6 WILD-TYPE"   "CDH6 MUTATED" "CDH6 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"CDH6 WILD-TYPE"   "CDH6 MUTATED" "CDH6 WILD-TYPE"   "CDH6 MUTATED" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
  "CDH6 MUTATED" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "CDH6 MUTATED" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE"   "CDH6 MUTATED" "CDH6 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE"   "CDH6 MUTATED" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"CDH6 WILD-TYPE"   "CDH6 MUTATED" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
  "CDH6 MUTATED" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE"   "CDH6 MUTATED" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"CDH6 WILD-TYPE"   "CDH6 MUTATED" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"CDH6 WILD-TYPE"   "CDH6 MUTATED" "CDH6 WILD-TYPE"   "CDH6 MUTATED" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE"   "CDH6 MUTATED" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"CDH6 WILD-TYPE"   "CDH6 MUTATED" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE"   "CDH6 MUTATED" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"CDH6 WILD-TYPE"   "CDH6 MUTATED" "CDH6 WILD-TYPE" 
[1] "hr=" "1.6"
D92V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  CDH6 MUTATED          5        5         0         3          2          1
  CDH6 WILD-TYPE       32       48        11        20         31          5
                vv
clus             STAGE IV
  CDH6 MUTATED          1
  CDH6 WILD-TYPE        8
D92V3, multiclass
                vv
clus              T1  T2  T3  T4
  CDH6 MUTATED     5   9   2   1
  CDH6 WILD-TYPE  36 100  12   7
D92V4, multiclass
    clus
vv   CDH6 MUTATED CDH6 WILD-TYPE
  T1            5             36
  T2            9            100
  T3            2             12
  T4            1              7
                vv
clus             N0 N1 N2+N3
  CDH6 MUTATED    9  3     3
  CDH6 WILD-TYPE 86 34    32
D92V5, multiclass
       clus
vv      CDH6 MUTATED CDH6 WILD-TYPE
  N0               9             86
  N1               3             34
  N2+N3            3             32
                vv
clus              M0  M1  MX
  CDH6 MUTATED    15   1   1
  CDH6 WILD-TYPE 128   8  17
D92V6, multiclass
    clus
vv   CDH6 MUTATED CDH6 WILD-TYPE
  M0           15            128
  M1            1              8
  MX            1             17
D92V7, binary
                cls
clus              0  1
  CDH6 MUTATED    9  8
  CDH6 WILD-TYPE 84 71
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH6 MUTATED      9    8
  CDH6 WILD-TYPE   84   71
        clus
vv       CDH6 MUTATED CDH6 WILD-TYPE
  FEMALE            9             84
  MALE              8             71
D92V8, continuous
[1] "Remove cluster labels:" "CDH6 MUTATED"          
clus
  CDH6 MUTATED CDH6 WILD-TYPE 
             1             11 
    TCGA-35-4122     TCGA-35-4123     TCGA-64-1677     TCGA-64-5778 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-71-6725     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4676     TCGA-75-5122 
"CDH6 WILD-TYPE" "CDH6 WILD-TYPE" "CDH6 WILD-TYPE" 
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  CDH6 MUTATED                            0                                 4
  CDH6 WILD-TYPE                          2                                35
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CDH6 MUTATED                                                   10
  CDH6 WILD-TYPE                                                105
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  CDH6 MUTATED                                            0
  CDH6 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  CDH6 MUTATED                                               1
  CDH6 WILD-TYPE                                             1
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  CDH6 MUTATED                                0
  CDH6 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  CDH6 MUTATED                                    0
  CDH6 WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  CDH6 MUTATED                              0                             1
  CDH6 WILD-TYPE                            2                             3
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  CDH6 MUTATED                                               0
  CDH6 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  CDH6 MUTATED                              1
  CDH6 WILD-TYPE                            1
D92V9, multiclass
D92V10, binary
                cls
clus               0   1
  CDH6 MUTATED     0  17
  CDH6 WILD-TYPE  14 141
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH6 MUTATED      0   17
  CDH6 WILD-TYPE   14  141
     clus
vv    CDH6 MUTATED CDH6 WILD-TYPE
  NO             0             14
  YES           17            141
D92V11, continuous
D92V12, continuous
                vv
clus              R0  R1  R2  RX
  CDH6 MUTATED    12   0   2   0
  CDH6 WILD-TYPE 103   6   2   9
D92V13, multiclass
    clus
vv   CDH6 MUTATED CDH6 WILD-TYPE
  R0           12            103
  R1            0              6
  R2            2              2
  RX            0              9

Clustering(93) Variable = TTC18 MUTATION ANALYSIS
D93V1, survival
                 sevent
clus2              0  1
  TTC18 MUTATED    3  1
  TTC18 WILD-TYPE 96 55
  TTC18 MUTATED TTC18 WILD-TYPE 
              4             151 
  TTC18 MUTATED TTC18 WILD-TYPE 
              1              55 
$`TTC18 MUTATED`
TCGA-05-4402 TCGA-49-6743 TCGA-67-3771 TCGA-73-4666 
        8.02        12.13        20.02        26.27 

$`TTC18 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
        9.96        24.03        47.05        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 
       15.02         4.96        28.96        22.03         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        97.74       120.79 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       14.73        21.93        46.98        13.15        44.94        24.36 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       42.08        42.77         3.19         8.09        37.15        38.24 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
       23.51         6.21        23.74        13.71        12.59        13.38 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
       10.78         9.93        27.78        11.90         5.42        12.16 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 
        8.81        29.46         5.16        55.89        15.02        29.26 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
       17.13        20.48        71.47        70.55        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       31.04        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12        18.64        29.00 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       25.12        22.55        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        87.98         2.04        42.90 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 
       28.41        51.25        28.44         0.99        18.84        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
       12.66         5.69         4.60        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       23.38        29.95        15.35         4.27         1.32         5.39 
TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.25        12.36        10.62        41.33        10.16         2.60 
TCGA-91-6836 
       13.71 

  TTC18 MUTATED TTC18 WILD-TYPE 
           8.02            0.07 
  TTC18 MUTATED TTC18 WILD-TYPE 
          26.27          120.79 
  TTC18 MUTATED TTC18 WILD-TYPE 
         16.075          21.470 
[1] "8.0 - 26.3 (16.1)"  "0.1 - 120.8 (21.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"TTC18 WILD-TYPE"   "TTC18 MUTATED" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
  "TTC18 MUTATED" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "TTC18 MUTATED" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE"   "TTC18 MUTATED" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"TTC18 WILD-TYPE"   "TTC18 MUTATED" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
  "TTC18 MUTATED" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "TTC18 MUTATED" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE"   "TTC18 MUTATED" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"TTC18 WILD-TYPE"   "TTC18 MUTATED" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
  "TTC18 MUTATED" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "TTC18 MUTATED" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE"   "TTC18 MUTATED" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
[1] "hr=" "1.2"
D93V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  TTC18 MUTATED          1        1         0         0          1          0
  TTC18 WILD-TYPE       36       52        11        23         32          6
                 vv
clus              STAGE IV
  TTC18 MUTATED          2
  TTC18 WILD-TYPE        7
D93V3, multiclass
                 vv
clus               T1  T2  T3  T4
  TTC18 MUTATED     3   2   0   0
  TTC18 WILD-TYPE  38 107  14   8
D93V4, multiclass
    clus
vv   TTC18 MUTATED TTC18 WILD-TYPE
  T1             3              38
  T2             2             107
  T3             0              14
  T4             0               8
                 vv
clus              N0 N1 N2+N3
  TTC18 MUTATED    3  0     1
  TTC18 WILD-TYPE 92 37    34
D93V5, multiclass
       clus
vv      TTC18 MUTATED TTC18 WILD-TYPE
  N0                3              92
  N1                0              37
  N2+N3             1              34
                 vv
clus               M0  M1  MX
  TTC18 MUTATED     2   2   1
  TTC18 WILD-TYPE 141   7  17
D93V6, multiclass
    clus
vv   TTC18 MUTATED TTC18 WILD-TYPE
  M0             2             141
  M1             2               7
  MX             1              17
D93V7, binary
                 cls
clus               0  1
  TTC18 MUTATED    5  0
  TTC18 WILD-TYPE 88 79
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TTC18 MUTATED      5    0
  TTC18 WILD-TYPE   88   79
        clus
vv       TTC18 MUTATED TTC18 WILD-TYPE
  FEMALE             5              88
  MALE               0              79
D93V8, continuous
[1] "Remove cluster labels:" "TTC18 MUTATED"         
clus
  TTC18 MUTATED TTC18 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  TTC18 MUTATED                            0                                 1
  TTC18 WILD-TYPE                          2                                38
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  TTC18 MUTATED                                                    3
  TTC18 WILD-TYPE                                                112
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  TTC18 MUTATED                                            0
  TTC18 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  TTC18 MUTATED                                               0
  TTC18 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  TTC18 MUTATED                                1
  TTC18 WILD-TYPE                              1
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  TTC18 MUTATED                                    0
  TTC18 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  TTC18 MUTATED                              0                             0
  TTC18 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  TTC18 MUTATED                                               0
  TTC18 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  TTC18 MUTATED                              0
  TTC18 WILD-TYPE                            2
D93V9, multiclass
D93V10, binary
                 cls
clus                0   1
  TTC18 MUTATED     1   4
  TTC18 WILD-TYPE  13 154
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TTC18 MUTATED      1    4
  TTC18 WILD-TYPE   13  154
     clus
vv    TTC18 MUTATED TTC18 WILD-TYPE
  NO              1              13
  YES             4             154
D93V11, continuous
D93V12, continuous
[1] "Remove cluster labels:" "TTC18 MUTATED"         
clus
  TTC18 MUTATED TTC18 WILD-TYPE 
              1              67 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4396      TCGA-05-4405 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-4410      TCGA-05-4415      TCGA-05-4417      TCGA-05-4424 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4433      TCGA-05-5420      TCGA-05-5423 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-5425      TCGA-05-5428      TCGA-35-4122      TCGA-35-4123 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-35-5375      TCGA-38-4625      TCGA-38-4626      TCGA-44-2655 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2662 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3396      TCGA-44-3398 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-3918      TCGA-44-4112      TCGA-44-5645      TCGA-44-6144 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6147      TCGA-44-6148      TCGA-44-6774 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-6775      TCGA-44-6776      TCGA-44-6777      TCGA-44-6778 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-6779      TCGA-49-4486      TCGA-49-4494      TCGA-49-4505 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6642      TCGA-55-6712      TCGA-64-1677 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-64-5774      TCGA-64-5775 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-64-5778      TCGA-64-5779      TCGA-64-5781      TCGA-73-4659 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-73-4662      TCGA-73-4668      TCGA-73-4670      TCGA-73-4675 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-73-4676      TCGA-91-6829      TCGA-91-6836 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
                 vv
clus               R0  R1  R2  RX
  TTC18 MUTATED     3   0   1   0
  TTC18 WILD-TYPE 112   6   3   9
D93V13, multiclass
    clus
vv   TTC18 MUTATED TTC18 WILD-TYPE
  R0             3             112
  R1             0               6
  R2             1               3
  RX             0               9

Clustering(94) Variable = NALCN MUTATION ANALYSIS
D94V1, survival
                 sevent
clus2              0  1
  NALCN MUTATED   13  9
  NALCN WILD-TYPE 86 47
  NALCN MUTATED NALCN WILD-TYPE 
             22             133 
  NALCN MUTATED NALCN WILD-TYPE 
              9              47 
$`NALCN MUTATED`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4396 TCGA-05-4397 TCGA-05-4424 TCGA-05-4427 
       50.07        19.92         9.96        24.03        30.02        26.01 
TCGA-05-4432 TCGA-38-4631 TCGA-44-2655 TCGA-44-4112 TCGA-44-6774 TCGA-44-6777 
       25.02        11.64        21.93        23.74         5.42        32.45 
TCGA-49-4488 TCGA-49-6742 TCGA-49-6743 TCGA-49-6745 TCGA-50-5044 TCGA-50-5941 
       28.57        15.02        12.13        17.13        20.48        18.64 
TCGA-50-6592 TCGA-55-5899 TCGA-67-3774 TCGA-73-4677 
       25.51         2.86        12.66         1.25 

$`NALCN WILD-TYPE`
TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4398 TCGA-05-4402 
        3.98        14.01        45.01        37.02        47.05         8.02 
TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
       19.00        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 
       12.00        21.99        26.01        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 
       15.02         4.96        28.96        22.03         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        97.74       120.79 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 
       37.71        49.02        28.37        35.28        44.61        14.73 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       46.98        13.15        44.94        24.36        42.08        42.77 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        37.15        38.24        23.51         6.21 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       13.71        12.59        13.38        10.78         9.93        27.78 
TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
       11.90        12.16        63.72        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.11        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6744 TCGA-50-5045 
        8.81        29.46         5.16        55.89        29.26        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       70.55        14.96        25.81        31.04        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
       15.12        29.00        25.12        22.55        42.31         3.88 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       48.62        45.17         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        87.98         2.04        42.90 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       28.41        51.25        28.44         0.99        20.02        18.84 
TCGA-67-3773 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
       14.04         5.69         4.60        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        26.27        15.35         4.27         1.32 
TCGA-73-4676 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        5.39        12.36        10.62        41.33        10.16         2.60 
TCGA-91-6836 
       13.71 

  NALCN MUTATED NALCN WILD-TYPE 
           1.25            0.07 
  NALCN MUTATED NALCN WILD-TYPE 
          50.07          120.79 
  NALCN MUTATED NALCN WILD-TYPE 
          20.20           21.47 
[1] "1.2 - 50.1 (20.2)"  "0.1 - 120.8 (21.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "NALCN MUTATED" "NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED"   "NALCN MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "NALCN MUTATED" "NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
  "NALCN MUTATED" "NALCN WILD-TYPE"   "NALCN MUTATED"   "NALCN MUTATED" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "NALCN MUTATED" "NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED"   "NALCN MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "NALCN MUTATED" "NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
  "NALCN MUTATED" "NALCN WILD-TYPE"   "NALCN MUTATED"   "NALCN MUTATED" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "NALCN MUTATED" "NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED"   "NALCN MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "NALCN MUTATED" "NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
  "NALCN MUTATED" "NALCN WILD-TYPE"   "NALCN MUTATED"   "NALCN MUTATED" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
[1] "hr=" "1.6"
D94V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  NALCN MUTATED          4        8         0         5          4          2
  NALCN WILD-TYPE       33       45        11        18         29          4
                 vv
clus              STAGE IV
  NALCN MUTATED          1
  NALCN WILD-TYPE        8
D94V3, multiclass
                 vv
clus              T1 T2 T3 T4
  NALCN MUTATED    5 16  1  2
  NALCN WILD-TYPE 36 93 13  6
D94V4, multiclass
    clus
vv   NALCN MUTATED NALCN WILD-TYPE
  T1             5              36
  T2            16              93
  T3             1              13
  T4             2               6
                 vv
clus              N0 N1 N2+N3
  NALCN MUTATED   11  7     5
  NALCN WILD-TYPE 84 30    30
D94V5, multiclass
       clus
vv      NALCN MUTATED NALCN WILD-TYPE
  N0               11              84
  N1                7              30
  N2+N3             5              30
                 vv
clus               M0  M1  MX
  NALCN MUTATED    20   1   3
  NALCN WILD-TYPE 123   8  15
D94V6, multiclass
    clus
vv   NALCN MUTATED NALCN WILD-TYPE
  M0            20             123
  M1             1               8
  MX             3              15
D94V7, binary
                 cls
clus               0  1
  NALCN MUTATED   12 12
  NALCN WILD-TYPE 81 67
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NALCN MUTATED     12   12
  NALCN WILD-TYPE   81   67
        clus
vv       NALCN MUTATED NALCN WILD-TYPE
  FEMALE            12              81
  MALE              12              67
D94V8, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  NALCN MUTATED                            0                                 7
  NALCN WILD-TYPE                          2                                32
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  NALCN MUTATED                                                   15
  NALCN WILD-TYPE                                                100
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  NALCN MUTATED                                            0
  NALCN WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  NALCN MUTATED                                               0
  NALCN WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  NALCN MUTATED                                1
  NALCN WILD-TYPE                              1
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  NALCN MUTATED                                    0
  NALCN WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  NALCN MUTATED                              0                             0
  NALCN WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  NALCN MUTATED                                               0
  NALCN WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  NALCN MUTATED                              1
  NALCN WILD-TYPE                            1
D94V9, multiclass
D94V10, binary
                 cls
clus                0   1
  NALCN MUTATED     1  23
  NALCN WILD-TYPE  13 135
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NALCN MUTATED      1   23
  NALCN WILD-TYPE   13  135
     clus
vv    NALCN MUTATED NALCN WILD-TYPE
  NO              1              13
  YES            23             135
D94V11, continuous
D94V12, continuous
                 vv
clus               R0  R1  R2  RX
  NALCN MUTATED    13   1   0   3
  NALCN WILD-TYPE 102   5   4   6
D94V13, multiclass
    clus
vv   NALCN MUTATED NALCN WILD-TYPE
  R0            13             102
  R1             1               5
  R2             0               4
  RX             3               6

Clustering(95) Variable = ABCB5 MUTATION ANALYSIS
D95V1, survival
                 sevent
clus2              0  1
  ABCB5 MUTATED   11  7
  ABCB5 WILD-TYPE 88 49
  ABCB5 MUTATED ABCB5 WILD-TYPE 
             18             137 
  ABCB5 MUTATED ABCB5 WILD-TYPE 
              7              49 
$`ABCB5 MUTATED`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4396 TCGA-05-4398 TCGA-05-4424 TCGA-38-4629 
        3.98        19.92         9.96        47.05        30.02        28.37 
TCGA-38-4632 TCGA-44-6145 TCGA-49-4494 TCGA-50-5049 TCGA-55-1596 TCGA-64-1678 
       44.61        10.78        35.54        70.55        45.17        39.09 
TCGA-64-5778 TCGA-64-5781 TCGA-73-4658 TCGA-73-4670 TCGA-91-6829 TCGA-91-6836 
       42.90        51.25        52.57         4.27        41.33        13.71 

$`ABCB5 WILD-TYPE`
TCGA-05-4249 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4397 TCGA-05-4402 
       50.07        14.01        45.01        37.02        24.03         8.02 
TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
       19.00        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       12.00        21.99        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 
       24.00        15.02        15.02         4.96        28.96        22.03 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 
       97.74       120.79        37.71        49.02        35.28        11.64 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       14.73        21.93        46.98        13.15        44.94        24.36 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       42.08        42.77         3.19         8.09        37.15        38.24 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
       23.51         6.21        23.74        13.71        12.59        13.38 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93        27.78        11.90         5.42        12.16        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       12.66        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
        5.16        55.89        15.02        12.13        29.26        17.13 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       20.48        71.47        14.96        25.81        31.04        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12        18.64        29.00        25.12        22.55 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 
       33.37        23.05        38.73        48.62         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1680 TCGA-64-5774 
       32.61         0.79        56.81        20.65        37.02        87.98 
TCGA-64-5775 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
        2.04        28.41        28.44         0.99        20.02        18.84 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
       14.04        12.66         5.69         4.60        13.87         2.01 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 
       23.38        29.95        26.27        15.35         1.32         5.39 
TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 
        1.25        12.36        10.62        10.16         2.60 

  ABCB5 MUTATED ABCB5 WILD-TYPE 
           3.98            0.07 
  ABCB5 MUTATED ABCB5 WILD-TYPE 
          70.55          120.79 
  ABCB5 MUTATED ABCB5 WILD-TYPE 
         37.315          20.020 
[1] "4.0 - 70.5 (37.3)"  "0.1 - 120.8 (20.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"ABCB5 WILD-TYPE"   "ABCB5 MUTATED"   "ABCB5 MUTATED" "ABCB5 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE"   "ABCB5 MUTATED" "ABCB5 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "ABCB5 MUTATED" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"ABCB5 WILD-TYPE"   "ABCB5 MUTATED" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE"   "ABCB5 MUTATED" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE"   "ABCB5 MUTATED" "ABCB5 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"ABCB5 WILD-TYPE"   "ABCB5 MUTATED" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE"   "ABCB5 MUTATED" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"ABCB5 WILD-TYPE"   "ABCB5 MUTATED" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
  "ABCB5 MUTATED" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE"   "ABCB5 MUTATED" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE"   "ABCB5 MUTATED" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"ABCB5 WILD-TYPE"   "ABCB5 MUTATED" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
  "ABCB5 MUTATED" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"ABCB5 WILD-TYPE"   "ABCB5 MUTATED" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE"   "ABCB5 MUTATED" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE"   "ABCB5 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"ABCB5 WILD-TYPE"   "ABCB5 MUTATED"   "ABCB5 MUTATED" "ABCB5 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE"   "ABCB5 MUTATED" "ABCB5 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "ABCB5 MUTATED" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"ABCB5 WILD-TYPE"   "ABCB5 MUTATED" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE"   "ABCB5 MUTATED" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE"   "ABCB5 MUTATED" "ABCB5 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"ABCB5 WILD-TYPE"   "ABCB5 MUTATED" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE"   "ABCB5 MUTATED" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"ABCB5 WILD-TYPE"   "ABCB5 MUTATED" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
  "ABCB5 MUTATED" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE"   "ABCB5 MUTATED" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE"   "ABCB5 MUTATED" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"ABCB5 WILD-TYPE"   "ABCB5 MUTATED" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
  "ABCB5 MUTATED" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"ABCB5 WILD-TYPE"   "ABCB5 MUTATED" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE"   "ABCB5 MUTATED" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE"   "ABCB5 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"ABCB5 WILD-TYPE"   "ABCB5 MUTATED"   "ABCB5 MUTATED" "ABCB5 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE"   "ABCB5 MUTATED" "ABCB5 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "ABCB5 MUTATED" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"ABCB5 WILD-TYPE"   "ABCB5 MUTATED" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE"   "ABCB5 MUTATED" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE"   "ABCB5 MUTATED" "ABCB5 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"ABCB5 WILD-TYPE"   "ABCB5 MUTATED" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE"   "ABCB5 MUTATED" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"ABCB5 WILD-TYPE"   "ABCB5 MUTATED" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
  "ABCB5 MUTATED" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE"   "ABCB5 MUTATED" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE"   "ABCB5 MUTATED" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"ABCB5 WILD-TYPE"   "ABCB5 MUTATED" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
  "ABCB5 MUTATED" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"ABCB5 WILD-TYPE"   "ABCB5 MUTATED" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE"   "ABCB5 MUTATED" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE"   "ABCB5 MUTATED" 
[1] "hr=" "1.3"
D95V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  ABCB5 MUTATED          2        7         1         3          2          2
  ABCB5 WILD-TYPE       35       46        10        20         31          4
                 vv
clus              STAGE IV
  ABCB5 MUTATED          2
  ABCB5 WILD-TYPE        7
D95V3, multiclass
                 vv
clus              T1 T2 T3 T4
  ABCB5 MUTATED    1 12  4  2
  ABCB5 WILD-TYPE 40 97 10  6
D95V4, multiclass
    clus
vv   ABCB5 MUTATED ABCB5 WILD-TYPE
  T1             1              40
  T2            12              97
  T3             4              10
  T4             2               6
                 vv
clus              N0 N1 N2+N3
  ABCB5 MUTATED   13  4     2
  ABCB5 WILD-TYPE 82 33    33
D95V5, multiclass
       clus
vv      ABCB5 MUTATED ABCB5 WILD-TYPE
  N0               13              82
  N1                4              33
  N2+N3             2              33
                 vv
clus               M0  M1  MX
  ABCB5 MUTATED    15   2   2
  ABCB5 WILD-TYPE 128   7  16
D95V6, multiclass
    clus
vv   ABCB5 MUTATED ABCB5 WILD-TYPE
  M0            15             128
  M1             2               7
  MX             2              16
D95V7, binary
                 cls
clus               0  1
  ABCB5 MUTATED    8 11
  ABCB5 WILD-TYPE 85 68
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ABCB5 MUTATED      8   11
  ABCB5 WILD-TYPE   85   68
        clus
vv       ABCB5 MUTATED ABCB5 WILD-TYPE
  FEMALE             8              85
  MALE              11              68
D95V8, continuous
[1] "Remove cluster labels:" "ABCB5 MUTATED"         
clus
  ABCB5 MUTATED ABCB5 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" "ABCB5 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  ABCB5 MUTATED                            0                                 6
  ABCB5 WILD-TYPE                          2                                33
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ABCB5 MUTATED                                                   11
  ABCB5 WILD-TYPE                                                104
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  ABCB5 MUTATED                                            0
  ABCB5 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  ABCB5 MUTATED                                               2
  ABCB5 WILD-TYPE                                             0
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  ABCB5 MUTATED                                0
  ABCB5 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  ABCB5 MUTATED                                    0
  ABCB5 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  ABCB5 MUTATED                              0                             0
  ABCB5 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  ABCB5 MUTATED                                               0
  ABCB5 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  ABCB5 MUTATED                              0
  ABCB5 WILD-TYPE                            2
D95V9, multiclass
D95V10, binary
                 cls
clus                0   1
  ABCB5 MUTATED     1  18
  ABCB5 WILD-TYPE  13 140
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ABCB5 MUTATED      1   18
  ABCB5 WILD-TYPE   13  140
     clus
vv    ABCB5 MUTATED ABCB5 WILD-TYPE
  NO              1              13
  YES            18             140
D95V11, continuous
D95V12, continuous
                 vv
clus               R0  R1  R2  RX
  ABCB5 MUTATED    13   1   1   1
  ABCB5 WILD-TYPE 102   5   3   8
D95V13, multiclass
    clus
vv   ABCB5 MUTATED ABCB5 WILD-TYPE
  R0            13             102
  R1             1               5
  R2             1               3
  RX             1               8

Clustering(96) Variable = OR5I1 MUTATION ANALYSIS
D96V1, survival
                 sevent
clus2              0  1
  OR5I1 MUTATED    6  3
  OR5I1 WILD-TYPE 93 53
  OR5I1 MUTATED OR5I1 WILD-TYPE 
              9             146 
  OR5I1 MUTATED OR5I1 WILD-TYPE 
              3              53 
$`OR5I1 MUTATED`
TCGA-05-4396 TCGA-05-4418 TCGA-05-4424 TCGA-05-5428 TCGA-44-6144 TCGA-49-6742 
        9.96         8.98        30.02        22.03        13.38        15.02 
TCGA-50-5933 TCGA-50-5941 TCGA-64-5781 
       77.88        18.64        51.25 

$`OR5I1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4420 TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
       14.93        29.95        12.00        21.99        26.01        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02        15.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
       28.96         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        97.74       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61        14.73        21.93        46.98 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        44.94        24.36        42.08        42.77         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        37.15        38.24        23.51         6.21        23.74 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
       13.71        12.59        10.78         9.93        27.78        11.90 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42        12.16        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46         5.16        55.89 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        29.26        17.13        20.48        71.47        70.55 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81        31.04        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 
        8.78        35.87        21.47         8.45        15.12        29.00 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       25.12        22.55        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        87.98         2.04        42.90 
TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       28.41        28.44         0.99        20.02        18.84        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
       12.66         5.69         4.60        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        26.27        15.35         4.27         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        5.39         1.25        12.36        10.62        41.33        10.16 
TCGA-91-6835 TCGA-91-6836 
        2.60        13.71 

  OR5I1 MUTATED OR5I1 WILD-TYPE 
           8.98            0.07 
  OR5I1 MUTATED OR5I1 WILD-TYPE 
          77.88          120.79 
  OR5I1 MUTATED OR5I1 WILD-TYPE 
          18.64           21.06 
[1] "9.0 - 77.9 (18.6)"  "0.1 - 120.8 (21.1)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
  "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
  "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE"   "OR5I1 MUTATED" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
  "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
  "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE"   "OR5I1 MUTATED" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
  "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
  "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE"   "OR5I1 MUTATED" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"OR5I1 WILD-TYPE"   "OR5I1 MUTATED" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" "OR5I1 WILD-TYPE" 
[1] "hr=" "1.4"
D96V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  OR5I1 MUTATED          1        2         1         2          3          2
  OR5I1 WILD-TYPE       36       51        10        21         30          4
                 vv
clus              STAGE IV
  OR5I1 MUTATED          0
  OR5I1 WILD-TYPE        9
D96V3, multiclass
                 vv
clus               T1  T2  T3  T4
  OR5I1 MUTATED     2   4   3   2
  OR5I1 WILD-TYPE  39 105  11   6
D96V4, multiclass
    clus
vv   OR5I1 MUTATED OR5I1 WILD-TYPE
  T1             2              39
  T2             4             105
  T3             3              11
  T4             2               6
                 vv
clus              N0 N1 N2+N3
  OR5I1 MUTATED    4  3     4
  OR5I1 WILD-TYPE 91 34    31
D96V5, multiclass
       clus
vv      OR5I1 MUTATED OR5I1 WILD-TYPE
  N0                4              91
  N1                3              34
  N2+N3             4              31
                 vv
clus               M0  M1  MX
  OR5I1 MUTATED    11   0   0
  OR5I1 WILD-TYPE 132   9  18
D96V6, multiclass
    clus
vv   OR5I1 MUTATED OR5I1 WILD-TYPE
  M0            11             132
  M1             0               9
  MX             0              18
D96V7, binary
                 cls
clus               0  1
  OR5I1 MUTATED    3  8
  OR5I1 WILD-TYPE 90 71
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5I1 MUTATED      3    8
  OR5I1 WILD-TYPE   90   71
        clus
vv       OR5I1 MUTATED OR5I1 WILD-TYPE
  FEMALE             3              90
  MALE               8              71
D96V8, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR5I1 MUTATED                            0                                 5
  OR5I1 WILD-TYPE                          2                                34
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR5I1 MUTATED                                                    5
  OR5I1 WILD-TYPE                                                110
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR5I1 MUTATED                                            0
  OR5I1 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR5I1 MUTATED                                               0
  OR5I1 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  OR5I1 MUTATED                                0
  OR5I1 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  OR5I1 MUTATED                                    0
  OR5I1 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR5I1 MUTATED                              0                             0
  OR5I1 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR5I1 MUTATED                                               0
  OR5I1 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  OR5I1 MUTATED                              1
  OR5I1 WILD-TYPE                            1
D96V9, multiclass
D96V10, binary
                 cls
clus                0   1
  OR5I1 MUTATED     1  10
  OR5I1 WILD-TYPE  13 148
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5I1 MUTATED      1   10
  OR5I1 WILD-TYPE   13  148
     clus
vv    OR5I1 MUTATED OR5I1 WILD-TYPE
  NO              1              13
  YES            10             148
D96V11, continuous
D96V12, continuous
                 vv
clus               R0  R1  R2  RX
  OR5I1 MUTATED     7   1   0   1
  OR5I1 WILD-TYPE 108   5   4   8
D96V13, multiclass
    clus
vv   OR5I1 MUTATED OR5I1 WILD-TYPE
  R0             7             108
  R1             1               5
  R2             0               4
  RX             1               8

Clustering(97) Variable = COL5A1 MUTATION ANALYSIS
D97V1, survival
                  sevent
clus2               0  1
  COL5A1 MUTATED    5  4
  COL5A1 WILD-TYPE 94 52
  COL5A1 MUTATED COL5A1 WILD-TYPE 
               9              146 
  COL5A1 MUTATED COL5A1 WILD-TYPE 
               4               52 
$`COL5A1 MUTATED`
TCGA-05-4382 TCGA-05-4418 TCGA-38-4631 TCGA-44-2656 TCGA-49-4487 TCGA-50-5933 
       19.92         8.98        11.64        46.98        28.11        77.88 
TCGA-64-5778 TCGA-67-3771 TCGA-67-6217 
       42.90        20.02        13.87 

$`COL5A1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 
       50.07         3.98        14.01        45.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
       14.93        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        4.96        28.96        22.03         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       49.02        28.37        35.28        44.61        14.73        21.93 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        44.94        24.36        42.08        42.77         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        37.15        38.24        23.51         6.21        23.74 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       13.71        12.59        13.38        10.78         9.93        27.78 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
       11.90         5.42        12.16        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       16.41        76.21        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46         5.16        55.89 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        29.26        17.13        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       70.55        14.96        25.81        31.04        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        9.27         8.78        35.87        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
       18.64        29.00        25.12        22.55        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        87.98 
TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 
        2.04        28.41        51.25        28.44         0.99        18.84 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-71-6725 TCGA-73-4658 
       14.04        12.66         5.69         4.60         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        26.27        15.35         4.27         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        5.39         1.25        12.36        10.62        41.33        10.16 
TCGA-91-6835 TCGA-91-6836 
        2.60        13.71 

  COL5A1 MUTATED COL5A1 WILD-TYPE 
            8.98             0.07 
  COL5A1 MUTATED COL5A1 WILD-TYPE 
           77.88           120.79 
  COL5A1 MUTATED COL5A1 WILD-TYPE 
           20.02            21.06 
[1] "9.0 - 77.9 (20.0)"  "0.1 - 120.8 (21.1)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE"   "COL5A1 MUTATED" "COL5A1 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE"   "COL5A1 MUTATED" "COL5A1 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"COL5A1 WILD-TYPE"   "COL5A1 MUTATED" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"COL5A1 WILD-TYPE"   "COL5A1 MUTATED" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
  "COL5A1 MUTATED" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE"   "COL5A1 MUTATED" "COL5A1 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE"   "COL5A1 MUTATED" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
  "COL5A1 MUTATED" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE"   "COL5A1 MUTATED" "COL5A1 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE"   "COL5A1 MUTATED" "COL5A1 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE"   "COL5A1 MUTATED" "COL5A1 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"COL5A1 WILD-TYPE"   "COL5A1 MUTATED" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"COL5A1 WILD-TYPE"   "COL5A1 MUTATED" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
  "COL5A1 MUTATED" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE"   "COL5A1 MUTATED" "COL5A1 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE"   "COL5A1 MUTATED" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
  "COL5A1 MUTATED" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE"   "COL5A1 MUTATED" "COL5A1 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE"   "COL5A1 MUTATED" "COL5A1 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE"   "COL5A1 MUTATED" "COL5A1 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"COL5A1 WILD-TYPE"   "COL5A1 MUTATED" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"COL5A1 WILD-TYPE"   "COL5A1 MUTATED" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
  "COL5A1 MUTATED" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE"   "COL5A1 MUTATED" "COL5A1 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE"   "COL5A1 MUTATED" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
  "COL5A1 MUTATED" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE"   "COL5A1 MUTATED" "COL5A1 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
[1] "hr=" "1.1"
D97V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  COL5A1 MUTATED          2        7         1         0          2          1
  COL5A1 WILD-TYPE       35       46        10        23         31          5
                  vv
clus               STAGE IV
  COL5A1 MUTATED          0
  COL5A1 WILD-TYPE        9
D97V3, multiclass
                  vv
clus                T1  T2  T3  T4
  COL5A1 MUTATED     2   7   3   1
  COL5A1 WILD-TYPE  39 102  11   7
D97V4, multiclass
    clus
vv   COL5A1 MUTATED COL5A1 WILD-TYPE
  T1              2               39
  T2              7              102
  T3              3               11
  T4              1                7
                  vv
clus               N0 N1 N2+N3
  COL5A1 MUTATED    9  1     3
  COL5A1 WILD-TYPE 86 36    32
D97V5, multiclass
       clus
vv      COL5A1 MUTATED COL5A1 WILD-TYPE
  N0                 9               86
  N1                 1               36
  N2+N3              3               32
                  vv
clus                M0  M1  MX
  COL5A1 MUTATED    13   0   0
  COL5A1 WILD-TYPE 130   9  18
D97V6, multiclass
    clus
vv   COL5A1 MUTATED COL5A1 WILD-TYPE
  M0             13              130
  M1              0                9
  MX              0               18
D97V7, binary
                  cls
clus                0  1
  COL5A1 MUTATED    5  8
  COL5A1 WILD-TYPE 88 71
[1] "tbl2"
                  cls
clus               [,1] [,2]
  COL5A1 MUTATED      5    8
  COL5A1 WILD-TYPE   88   71
        clus
vv       COL5A1 MUTATED COL5A1 WILD-TYPE
  FEMALE              5               88
  MALE                8               71
D97V8, continuous
[1] "Remove cluster labels:" "COL5A1 MUTATED"        
clus
  COL5A1 MUTATED COL5A1 WILD-TYPE 
               2               10 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  COL5A1 MUTATED                            0                                 3
  COL5A1 WILD-TYPE                          2                                36
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  COL5A1 MUTATED                                                    8
  COL5A1 WILD-TYPE                                                107
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  COL5A1 MUTATED                                            0
  COL5A1 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  COL5A1 MUTATED                                               1
  COL5A1 WILD-TYPE                                             1
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  COL5A1 MUTATED                                0
  COL5A1 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  COL5A1 MUTATED                                    0
  COL5A1 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  COL5A1 MUTATED                              0                             1
  COL5A1 WILD-TYPE                            2                             3
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  COL5A1 MUTATED                                               0
  COL5A1 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  COL5A1 MUTATED                              0
  COL5A1 WILD-TYPE                            2
D97V9, multiclass
D97V10, binary
                  cls
clus                 0   1
  COL5A1 MUTATED     1  12
  COL5A1 WILD-TYPE  13 146
[1] "tbl2"
                  cls
clus               [,1] [,2]
  COL5A1 MUTATED      1   12
  COL5A1 WILD-TYPE   13  146
     clus
vv    COL5A1 MUTATED COL5A1 WILD-TYPE
  NO               1               13
  YES             12              146
D97V11, continuous
D97V12, continuous
                  vv
clus                R0  R1  R2  RX
  COL5A1 MUTATED     9   0   1   1
  COL5A1 WILD-TYPE 106   6   3   8
D97V13, multiclass
    clus
vv   COL5A1 MUTATED COL5A1 WILD-TYPE
  R0              9              106
  R1              0                6
  R2              1                3
  RX              1                8

Clustering(98) Variable = ITGAX MUTATION ANALYSIS
D98V1, survival
                 sevent
clus2              0  1
  ITGAX MUTATED   10  6
  ITGAX WILD-TYPE 89 50
  ITGAX MUTATED ITGAX WILD-TYPE 
             16             139 
  ITGAX MUTATED ITGAX WILD-TYPE 
              6              50 
$`ITGAX MUTATED`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4398 TCGA-05-4415 TCGA-05-4418 
        3.98        19.92        14.01        47.05         2.96         8.98 
TCGA-05-4427 TCGA-05-4430 TCGA-35-5375 TCGA-38-4626 TCGA-44-2668 TCGA-44-6777 
       26.01        25.02         8.68       120.79         8.09        32.45 
TCGA-50-5044 TCGA-55-1595 TCGA-71-6725 TCGA-73-4670 
       20.48        48.62         2.01         4.27 

$`ITGAX WILD-TYPE`
TCGA-05-4249 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 TCGA-05-4402 
       50.07        45.01        37.02         9.96        24.03         8.02 
TCGA-05-4403 TCGA-05-4405 TCGA-05-4417 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
       19.00        20.05        14.93        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       21.99        26.01        25.02        24.00        15.02        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        4.96        28.96        22.03         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        7.36         5.95        97.74        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61        14.73        21.93        46.98 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        44.94        24.36        42.08        42.77         3.19 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       37.15        38.24        23.51         6.21        23.74        13.71 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
       12.59        13.38        10.78         9.93        27.78        11.90 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        5.42        12.16        63.72        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46         5.16        55.89        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.13        29.26        17.13        71.47        70.55        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81        31.04        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12        18.64 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
       29.00        25.12        22.55        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        87.98         2.04        42.90 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       28.41        51.25        28.44         0.99        20.02        18.84 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-73-4658 
       14.04        12.66         5.69         4.60        13.87        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 
       23.38        29.95        26.27        15.35         1.32         5.39 
TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.25        12.36        10.62        41.33        10.16         2.60 
TCGA-91-6836 
       13.71 

  ITGAX MUTATED ITGAX WILD-TYPE 
           2.01            0.07 
  ITGAX MUTATED ITGAX WILD-TYPE 
         120.79           97.74 
  ITGAX MUTATED ITGAX WILD-TYPE 
         16.965          21.930 
[1] "2.0 - 120.8 (17.0)" "0.1 - 97.7 (21.9)" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"ITGAX WILD-TYPE"   "ITGAX MUTATED"   "ITGAX MUTATED"   "ITGAX MUTATED" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "ITGAX MUTATED" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
  "ITGAX MUTATED" "ITGAX WILD-TYPE"   "ITGAX MUTATED" "ITGAX WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "ITGAX MUTATED"   "ITGAX MUTATED" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE"   "ITGAX MUTATED" "ITGAX WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
  "ITGAX MUTATED" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
  "ITGAX MUTATED" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
  "ITGAX MUTATED" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE"   "ITGAX MUTATED" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE"   "ITGAX MUTATED" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE"   "ITGAX MUTATED" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"ITGAX WILD-TYPE"   "ITGAX MUTATED" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"ITGAX WILD-TYPE"   "ITGAX MUTATED"   "ITGAX MUTATED"   "ITGAX MUTATED" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "ITGAX MUTATED" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
  "ITGAX MUTATED" "ITGAX WILD-TYPE"   "ITGAX MUTATED" "ITGAX WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "ITGAX MUTATED"   "ITGAX MUTATED" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE"   "ITGAX MUTATED" "ITGAX WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
  "ITGAX MUTATED" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
  "ITGAX MUTATED" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
  "ITGAX MUTATED" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE"   "ITGAX MUTATED" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE"   "ITGAX MUTATED" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE"   "ITGAX MUTATED" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"ITGAX WILD-TYPE"   "ITGAX MUTATED" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"ITGAX WILD-TYPE"   "ITGAX MUTATED"   "ITGAX MUTATED"   "ITGAX MUTATED" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "ITGAX MUTATED" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
  "ITGAX MUTATED" "ITGAX WILD-TYPE"   "ITGAX MUTATED" "ITGAX WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "ITGAX MUTATED"   "ITGAX MUTATED" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE"   "ITGAX MUTATED" "ITGAX WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
  "ITGAX MUTATED" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
  "ITGAX MUTATED" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
  "ITGAX MUTATED" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE"   "ITGAX MUTATED" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE"   "ITGAX MUTATED" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE"   "ITGAX MUTATED" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"ITGAX WILD-TYPE"   "ITGAX MUTATED" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
[1] "hr=" "1.1"
D98V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  ITGAX MUTATED          1        6         1         1          4          3
  ITGAX WILD-TYPE       36       47        10        22         29          3
                 vv
clus              STAGE IV
  ITGAX MUTATED          1
  ITGAX WILD-TYPE        8
D98V3, multiclass
                 vv
clus              T1 T2 T3 T4
  ITGAX MUTATED    1 11  2  3
  ITGAX WILD-TYPE 40 98 12  5
D98V4, multiclass
    clus
vv   ITGAX MUTATED ITGAX WILD-TYPE
  T1             1              40
  T2            11              98
  T3             2              12
  T4             3               5
                 vv
clus              N0 N1 N2+N3
  ITGAX MUTATED    8  3     5
  ITGAX WILD-TYPE 87 34    30
D98V5, multiclass
       clus
vv      ITGAX MUTATED ITGAX WILD-TYPE
  N0                8              87
  N1                3              34
  N2+N3             5              30
                 vv
clus               M0  M1  MX
  ITGAX MUTATED    15   1   1
  ITGAX WILD-TYPE 128   8  17
D98V6, multiclass
    clus
vv   ITGAX MUTATED ITGAX WILD-TYPE
  M0            15             128
  M1             1               8
  MX             1              17
D98V7, binary
                 cls
clus               0  1
  ITGAX MUTATED   10  7
  ITGAX WILD-TYPE 83 72
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ITGAX MUTATED     10    7
  ITGAX WILD-TYPE   83   72
        clus
vv       ITGAX MUTATED ITGAX WILD-TYPE
  FEMALE            10              83
  MALE               7              72
D98V8, continuous
[1] "Remove cluster labels:" "ITGAX MUTATED"         
clus
  ITGAX MUTATED ITGAX WILD-TYPE 
              2              10 
     TCGA-35-4122      TCGA-35-4123      TCGA-64-1677      TCGA-64-5778 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
     TCGA-73-4676      TCGA-75-5122 
"ITGAX WILD-TYPE" "ITGAX WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  ITGAX MUTATED                            0                                 8
  ITGAX WILD-TYPE                          2                                31
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ITGAX MUTATED                                                    7
  ITGAX WILD-TYPE                                                108
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  ITGAX MUTATED                                            0
  ITGAX WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  ITGAX MUTATED                                               0
  ITGAX WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  ITGAX MUTATED                                1
  ITGAX WILD-TYPE                              1
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  ITGAX MUTATED                                    0
  ITGAX WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  ITGAX MUTATED                              0                             1
  ITGAX WILD-TYPE                            2                             3
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  ITGAX MUTATED                                               0
  ITGAX WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  ITGAX MUTATED                              0
  ITGAX WILD-TYPE                            2
D98V9, multiclass
D98V10, binary
                 cls
clus                0   1
  ITGAX MUTATED     1  16
  ITGAX WILD-TYPE  13 142
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ITGAX MUTATED      1   16
  ITGAX WILD-TYPE   13  142
     clus
vv    ITGAX MUTATED ITGAX WILD-TYPE
  NO              1              13
  YES            16             142
D98V11, continuous
D98V12, continuous
                 vv
clus               R0  R1  R2  RX
  ITGAX MUTATED    10   0   1   3
  ITGAX WILD-TYPE 105   6   3   6
D98V13, multiclass
    clus
vv   ITGAX MUTATED ITGAX WILD-TYPE
  R0            10             105
  R1             0               6
  R2             1               3
  RX             3               6

Clustering(99) Variable = FBXL7 MUTATION ANALYSIS
D99V1, survival
                 sevent
clus2              0  1
  FBXL7 MUTATED    9  6
  FBXL7 WILD-TYPE 90 50
  FBXL7 MUTATED FBXL7 WILD-TYPE 
             15             140 
  FBXL7 MUTATED FBXL7 WILD-TYPE 
              6              50 
$`FBXL7 MUTATED`
TCGA-05-4382 TCGA-05-4389 TCGA-05-4390 TCGA-05-4418 TCGA-05-4426 TCGA-35-4122 
       19.92        45.01        37.02         8.98        26.01         7.36 
TCGA-38-4628 TCGA-38-4631 TCGA-44-6776 TCGA-49-4510 TCGA-50-5933 TCGA-55-5899 
       49.02        11.64        63.72        29.46        77.88         2.86 
TCGA-64-1676 TCGA-67-3771 TCGA-73-4677 
       56.81        20.02         1.25 

$`FBXL7 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
       50.07         3.98        14.01         9.96        24.03        47.05 
TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4420 
        8.02        19.00        20.05         2.96        14.93        29.95 
TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       12.00        30.02        21.99        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 
       24.00        15.02        15.02         4.96        28.96        22.03 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        0.99         2.04         0.46         5.95         8.68        97.74 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 
      120.79        37.71        28.37        35.28        44.61        14.73 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       21.93        46.98        13.15        44.94        24.36        42.08 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       42.77         3.19         8.09        37.15        38.24        23.51 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21        23.74        13.71        12.59        13.38        10.78 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6777 
        9.93        27.78        11.90         5.42        12.16        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4512 
       35.54        46.72        14.07        32.84         8.81         5.16 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       55.89        15.02        12.13        29.26        17.13        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        70.55        14.96        25.81        31.04        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 
        8.05         9.27         8.78        35.87        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12        18.64        29.00        25.12        22.55        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 
       23.05        38.73        48.62        45.17         0.07        32.61 
TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
        0.79        20.65        39.09        37.02        87.98         2.04 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 
       42.90        28.41        51.25        28.44         0.99        18.84 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
       14.04        12.66         5.69         4.60        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        26.27        15.35         4.27 
TCGA-73-4675 TCGA-73-4676 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         5.39        12.36        10.62        41.33        10.16 
TCGA-91-6835 TCGA-91-6836 
        2.60        13.71 

  FBXL7 MUTATED FBXL7 WILD-TYPE 
           1.25            0.07 
  FBXL7 MUTATED FBXL7 WILD-TYPE 
          77.88          120.79 
  FBXL7 MUTATED FBXL7 WILD-TYPE 
         26.010          20.565 
[1] "1.2 - 77.9 (26.0)"  "0.1 - 120.8 (20.6)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE"   "FBXL7 MUTATED" "FBXL7 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
  "FBXL7 MUTATED"   "FBXL7 MUTATED" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE"   "FBXL7 MUTATED" "FBXL7 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE"   "FBXL7 MUTATED" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
  "FBXL7 MUTATED" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE"   "FBXL7 MUTATED" "FBXL7 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"FBXL7 WILD-TYPE"   "FBXL7 MUTATED" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE"   "FBXL7 MUTATED" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
  "FBXL7 MUTATED" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE"   "FBXL7 MUTATED" "FBXL7 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"FBXL7 WILD-TYPE"   "FBXL7 MUTATED" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"FBXL7 WILD-TYPE"   "FBXL7 MUTATED" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "FBXL7 MUTATED" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
  "FBXL7 MUTATED" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE"   "FBXL7 MUTATED" "FBXL7 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
  "FBXL7 MUTATED"   "FBXL7 MUTATED" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE"   "FBXL7 MUTATED" "FBXL7 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE"   "FBXL7 MUTATED" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
  "FBXL7 MUTATED" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE"   "FBXL7 MUTATED" "FBXL7 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"FBXL7 WILD-TYPE"   "FBXL7 MUTATED" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE"   "FBXL7 MUTATED" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
  "FBXL7 MUTATED" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE"   "FBXL7 MUTATED" "FBXL7 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"FBXL7 WILD-TYPE"   "FBXL7 MUTATED" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"FBXL7 WILD-TYPE"   "FBXL7 MUTATED" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "FBXL7 MUTATED" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
  "FBXL7 MUTATED" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE"   "FBXL7 MUTATED" "FBXL7 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
  "FBXL7 MUTATED"   "FBXL7 MUTATED" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE"   "FBXL7 MUTATED" "FBXL7 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE"   "FBXL7 MUTATED" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
  "FBXL7 MUTATED" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE"   "FBXL7 MUTATED" "FBXL7 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"FBXL7 WILD-TYPE"   "FBXL7 MUTATED" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE"   "FBXL7 MUTATED" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
  "FBXL7 MUTATED" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE"   "FBXL7 MUTATED" "FBXL7 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"FBXL7 WILD-TYPE"   "FBXL7 MUTATED" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"FBXL7 WILD-TYPE"   "FBXL7 MUTATED" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "FBXL7 MUTATED" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
  "FBXL7 MUTATED" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
[1] "hr=" "1.2"
D99V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  FBXL7 MUTATED          7        5         0         2          1          2
  FBXL7 WILD-TYPE       30       48        11        21         32          4
                 vv
clus              STAGE IV
  FBXL7 MUTATED          0
  FBXL7 WILD-TYPE        9
D99V3, multiclass
                 vv
clus               T1  T2  T3  T4
  FBXL7 MUTATED     6   8   1   2
  FBXL7 WILD-TYPE  35 101  13   6
D99V4, multiclass
    clus
vv   FBXL7 MUTATED FBXL7 WILD-TYPE
  T1             6              35
  T2             8             101
  T3             1              13
  T4             2               6
                 vv
clus              N0 N1 N2+N3
  FBXL7 MUTATED   11  3     3
  FBXL7 WILD-TYPE 84 34    32
D99V5, multiclass
       clus
vv      FBXL7 MUTATED FBXL7 WILD-TYPE
  N0               11              84
  N1                3              34
  N2+N3             3              32
                 vv
clus               M0  M1  MX
  FBXL7 MUTATED    16   0   1
  FBXL7 WILD-TYPE 127   9  17
D99V6, multiclass
    clus
vv   FBXL7 MUTATED FBXL7 WILD-TYPE
  M0            16             127
  M1             0               9
  MX             1              17
D99V7, binary
                 cls
clus               0  1
  FBXL7 MUTATED    6 11
  FBXL7 WILD-TYPE 87 68
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FBXL7 MUTATED      6   11
  FBXL7 WILD-TYPE   87   68
        clus
vv       FBXL7 MUTATED FBXL7 WILD-TYPE
  FEMALE             6              87
  MALE              11              68
D99V8, continuous
[1] "Remove cluster labels:" "FBXL7 MUTATED"         
clus
  FBXL7 MUTATED FBXL7 WILD-TYPE 
              1              11 
     TCGA-35-4123      TCGA-35-5375      TCGA-64-1677      TCGA-64-5778 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" "FBXL7 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  FBXL7 MUTATED                            0                                 6
  FBXL7 WILD-TYPE                          2                                33
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  FBXL7 MUTATED                                                   10
  FBXL7 WILD-TYPE                                                105
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  FBXL7 MUTATED                                            0
  FBXL7 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  FBXL7 MUTATED                                               0
  FBXL7 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  FBXL7 MUTATED                                0
  FBXL7 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  FBXL7 MUTATED                                    0
  FBXL7 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  FBXL7 MUTATED                              0                             0
  FBXL7 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  FBXL7 MUTATED                                               1
  FBXL7 WILD-TYPE                                             0
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  FBXL7 MUTATED                              0
  FBXL7 WILD-TYPE                            2
D99V9, multiclass
D99V10, binary
                 cls
clus                0   1
  FBXL7 MUTATED     1  16
  FBXL7 WILD-TYPE  13 142
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FBXL7 MUTATED      1   16
  FBXL7 WILD-TYPE   13  142
     clus
vv    FBXL7 MUTATED FBXL7 WILD-TYPE
  NO              1              13
  YES            16             142
D99V11, continuous
D99V12, continuous
                 vv
clus               R0  R1  R2  RX
  FBXL7 MUTATED    15   0   0   0
  FBXL7 WILD-TYPE 100   6   4   9
D99V13, multiclass
    clus
vv   FBXL7 MUTATED FBXL7 WILD-TYPE
  R0            15             100
  R1             0               6
  R2             0               4
  RX             0               9

Clustering(100) Variable = SVEP1 MUTATION ANALYSIS
D100V1, survival
                 sevent
clus2              0  1
  SVEP1 MUTATED    8 10
  SVEP1 WILD-TYPE 91 46
  SVEP1 MUTATED SVEP1 WILD-TYPE 
             18             137 
  SVEP1 MUTATED SVEP1 WILD-TYPE 
             10              46 
$`SVEP1 MUTATED`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4396 TCGA-05-4415 TCGA-05-4417 TCGA-05-4420 
        3.98        19.92         9.96         2.96        14.93        29.95 
TCGA-38-4632 TCGA-44-2657 TCGA-44-6776 TCGA-49-4487 TCGA-49-4505 TCGA-49-4510 
       44.61        13.15        63.72        28.11        14.07        29.46 
TCGA-64-1676 TCGA-64-5815 TCGA-73-4658 TCGA-73-4662 TCGA-73-4677 TCGA-91-6829 
       56.81        28.44        52.57        29.95         1.25        41.33 

$`SVEP1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       50.07        14.01        45.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4418 TCGA-05-4422 TCGA-05-4424 
        8.02        19.00        20.05         8.98        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       21.99        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 
       15.02        15.02         4.96        28.96        22.03         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        97.74 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
      120.79        37.71        49.02        28.37        35.28        11.64 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       14.73        21.93        46.98        44.94        24.36        42.08 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       42.77         3.19         8.09        37.15        38.24        23.51 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21        23.74        13.71        12.59        13.38        10.78 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6777 
        9.93        27.78        11.90         5.42        12.16        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       36.49        16.41        76.21        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       46.72        32.84         8.81         5.16        55.89        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        29.26        17.13        20.48        71.47        70.55 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81        31.04        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
       18.64        29.00        25.12        22.55        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
        0.79        20.65        39.09        37.02        87.98         2.04 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       42.90        28.41        51.25         0.99        20.02        18.84 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
       14.04        12.66         5.69         4.60        13.87         2.01 
TCGA-73-4659 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       23.38        26.27        15.35         4.27         1.32         5.39 
TCGA-86-6562 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       12.36        10.62        10.16         2.60        13.71 

  SVEP1 MUTATED SVEP1 WILD-TYPE 
           1.25            0.07 
  SVEP1 MUTATED SVEP1 WILD-TYPE 
          63.72          120.79 
  SVEP1 MUTATED SVEP1 WILD-TYPE 
         28.275          20.480 
[1] "1.2 - 63.7 (28.3)"  "0.1 - 120.8 (20.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"SVEP1 WILD-TYPE"   "SVEP1 MUTATED"   "SVEP1 MUTATED" "SVEP1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE"   "SVEP1 MUTATED" "SVEP1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
  "SVEP1 MUTATED"   "SVEP1 MUTATED" "SVEP1 WILD-TYPE"   "SVEP1 MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE"   "SVEP1 MUTATED" "SVEP1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE"   "SVEP1 MUTATED" "SVEP1 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE"   "SVEP1 MUTATED" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
  "SVEP1 MUTATED" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"SVEP1 WILD-TYPE"   "SVEP1 MUTATED" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
  "SVEP1 MUTATED" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"SVEP1 WILD-TYPE"   "SVEP1 MUTATED" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE"   "SVEP1 MUTATED" "SVEP1 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
  "SVEP1 MUTATED" "SVEP1 WILD-TYPE"   "SVEP1 MUTATED" "SVEP1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
  "SVEP1 MUTATED" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE"   "SVEP1 MUTATED" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"SVEP1 WILD-TYPE"   "SVEP1 MUTATED"   "SVEP1 MUTATED" "SVEP1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE"   "SVEP1 MUTATED" "SVEP1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
  "SVEP1 MUTATED"   "SVEP1 MUTATED" "SVEP1 WILD-TYPE"   "SVEP1 MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE"   "SVEP1 MUTATED" "SVEP1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE"   "SVEP1 MUTATED" "SVEP1 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE"   "SVEP1 MUTATED" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
  "SVEP1 MUTATED" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"SVEP1 WILD-TYPE"   "SVEP1 MUTATED" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
  "SVEP1 MUTATED" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"SVEP1 WILD-TYPE"   "SVEP1 MUTATED" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE"   "SVEP1 MUTATED" "SVEP1 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
  "SVEP1 MUTATED" "SVEP1 WILD-TYPE"   "SVEP1 MUTATED" "SVEP1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
  "SVEP1 MUTATED" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE"   "SVEP1 MUTATED" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"SVEP1 WILD-TYPE"   "SVEP1 MUTATED"   "SVEP1 MUTATED" "SVEP1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE"   "SVEP1 MUTATED" "SVEP1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
  "SVEP1 MUTATED"   "SVEP1 MUTATED" "SVEP1 WILD-TYPE"   "SVEP1 MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE"   "SVEP1 MUTATED" "SVEP1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE"   "SVEP1 MUTATED" "SVEP1 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE"   "SVEP1 MUTATED" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
  "SVEP1 MUTATED" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"SVEP1 WILD-TYPE"   "SVEP1 MUTATED" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
  "SVEP1 MUTATED" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"SVEP1 WILD-TYPE"   "SVEP1 MUTATED" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE"   "SVEP1 MUTATED" "SVEP1 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
  "SVEP1 MUTATED" "SVEP1 WILD-TYPE"   "SVEP1 MUTATED" "SVEP1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
  "SVEP1 MUTATED" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE"   "SVEP1 MUTATED" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
[1] "hr=" "1.5"
D100V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  SVEP1 MUTATED          5        7         0         3          2          3
  SVEP1 WILD-TYPE       32       46        11        20         31          3
                 vv
clus              STAGE IV
  SVEP1 MUTATED          1
  SVEP1 WILD-TYPE        8
D100V3, multiclass
                 vv
clus              T1 T2 T3 T4
  SVEP1 MUTATED    4 12  2  3
  SVEP1 WILD-TYPE 37 97 12  5
D100V4, multiclass
    clus
vv   SVEP1 MUTATED SVEP1 WILD-TYPE
  T1             4              37
  T2            12              97
  T3             2              12
  T4             3               5
                 vv
clus              N0 N1 N2+N3
  SVEP1 MUTATED   11  6     3
  SVEP1 WILD-TYPE 84 31    32
D100V5, multiclass
       clus
vv      SVEP1 MUTATED SVEP1 WILD-TYPE
  N0               11              84
  N1                6              31
  N2+N3             3              32
                 vv
clus               M0  M1  MX
  SVEP1 MUTATED    18   1   2
  SVEP1 WILD-TYPE 125   8  16
D100V6, multiclass
    clus
vv   SVEP1 MUTATED SVEP1 WILD-TYPE
  M0            18             125
  M1             1               8
  MX             2              16
D100V7, binary
                 cls
clus               0  1
  SVEP1 MUTATED   10 11
  SVEP1 WILD-TYPE 83 68
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SVEP1 MUTATED     10   11
  SVEP1 WILD-TYPE   83   68
        clus
vv       SVEP1 MUTATED SVEP1 WILD-TYPE
  FEMALE            10              83
  MALE              11              68
D100V8, continuous
[1] "Remove cluster labels:" "SVEP1 MUTATED"         
clus
  SVEP1 MUTATED SVEP1 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4666 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" "SVEP1 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  SVEP1 MUTATED                            0                                 8
  SVEP1 WILD-TYPE                          2                                31
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SVEP1 MUTATED                                                   11
  SVEP1 WILD-TYPE                                                104
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  SVEP1 MUTATED                                            0
  SVEP1 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  SVEP1 MUTATED                                               1
  SVEP1 WILD-TYPE                                             1
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  SVEP1 MUTATED                                0
  SVEP1 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  SVEP1 MUTATED                                    0
  SVEP1 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  SVEP1 MUTATED                              0                             1
  SVEP1 WILD-TYPE                            2                             3
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  SVEP1 MUTATED                                               0
  SVEP1 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  SVEP1 MUTATED                              0
  SVEP1 WILD-TYPE                            2
D100V9, multiclass
D100V10, binary
                 cls
clus                0   1
  SVEP1 MUTATED     0  21
  SVEP1 WILD-TYPE  14 137
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SVEP1 MUTATED      0   21
  SVEP1 WILD-TYPE   14  137
     clus
vv    SVEP1 MUTATED SVEP1 WILD-TYPE
  NO              0              14
  YES            21             137
D100V11, continuous
D100V12, continuous
                 vv
clus              R0 R1 R2 RX
  SVEP1 MUTATED   17  0  2  1
  SVEP1 WILD-TYPE 98  6  2  8
D100V13, multiclass
    clus
vv   SVEP1 MUTATED SVEP1 WILD-TYPE
  R0            17              98
  R1             0               6
  R2             2               2
  RX             1               8

Clustering(101) Variable = DEFB112 MUTATION ANALYSIS
D101V1, survival
                   sevent
clus2                0  1
  DEFB112 MUTATED    3  1
  DEFB112 WILD-TYPE 96 55
  DEFB112 MUTATED DEFB112 WILD-TYPE 
                4               151 
  DEFB112 MUTATED DEFB112 WILD-TYPE 
                1                55 
$`DEFB112 MUTATED`
TCGA-44-2656 TCGA-55-1592 TCGA-64-5779 TCGA-73-4666 
       46.98        23.05        28.41        26.27 

$`DEFB112 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       21.99        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 
       15.02        15.02         4.96        28.96        22.03         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        97.74 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
      120.79        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       44.61        14.73        21.93        13.15        44.94        24.36 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       42.08        42.77         3.19         8.09        37.15        38.24 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
       23.51         6.21        23.74        13.71        12.59        13.38 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
       10.78         9.93        27.78        11.90         5.42        12.16 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46         5.16        55.89        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       29.26        17.13        20.48        71.47        70.55        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81        31.04        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12        18.64 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
       29.00        25.12        22.55        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 
       11.05        12.16         6.21        33.37        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        87.98         2.04        42.90 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       51.25        28.44         0.99        20.02        18.84        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
       12.66         5.69         4.60        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       23.38        29.95        15.35         4.27         1.32         5.39 
TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.25        12.36        10.62        41.33        10.16         2.60 
TCGA-91-6836 
       13.71 

  DEFB112 MUTATED DEFB112 WILD-TYPE 
            23.05              0.07 
  DEFB112 MUTATED DEFB112 WILD-TYPE 
            46.98            120.79 
  DEFB112 MUTATED DEFB112 WILD-TYPE 
            27.34             20.05 
[1] "23.1 - 47.0 (27.3)" "0.1 - 120.8 (20.1)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"DEFB112 WILD-TYPE"   "DEFB112 MUTATED" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"DEFB112 WILD-TYPE"   "DEFB112 MUTATED" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
  "DEFB112 MUTATED" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE"   "DEFB112 MUTATED" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"DEFB112 WILD-TYPE"   "DEFB112 MUTATED" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"DEFB112 WILD-TYPE"   "DEFB112 MUTATED" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
  "DEFB112 MUTATED" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE"   "DEFB112 MUTATED" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"DEFB112 WILD-TYPE"   "DEFB112 MUTATED" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"DEFB112 WILD-TYPE"   "DEFB112 MUTATED" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
  "DEFB112 MUTATED" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE"   "DEFB112 MUTATED" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
[1] "hr=" "1.8"
D101V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  DEFB112 MUTATED          1        1         0         0          1          0
  DEFB112 WILD-TYPE       36       52        11        23         32          6
                   vv
clus                STAGE IV
  DEFB112 MUTATED          1
  DEFB112 WILD-TYPE        8
D101V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  DEFB112 MUTATED     1   3   0   0
  DEFB112 WILD-TYPE  40 106  14   8
D101V4, multiclass
    clus
vv   DEFB112 MUTATED DEFB112 WILD-TYPE
  T1               1                40
  T2               3               106
  T3               0                14
  T4               0                 8
                   vv
clus                N0 N1 N2+N3
  DEFB112 MUTATED    3  0     1
  DEFB112 WILD-TYPE 92 37    34
D101V5, multiclass
       clus
vv      DEFB112 MUTATED DEFB112 WILD-TYPE
  N0                  3                92
  N1                  0                37
  N2+N3               1                34
                   vv
clus                 M0  M1  MX
  DEFB112 MUTATED     3   1   0
  DEFB112 WILD-TYPE 140   8  18
D101V6, multiclass
    clus
vv   DEFB112 MUTATED DEFB112 WILD-TYPE
  M0               3               140
  M1               1                 8
  MX               0                18
D101V7, binary
                   cls
clus                 0  1
  DEFB112 MUTATED    1  3
  DEFB112 WILD-TYPE 92 76
[1] "tbl2"
                   cls
clus                [,1] [,2]
  DEFB112 MUTATED      1    3
  DEFB112 WILD-TYPE   92   76
        clus
vv       DEFB112 MUTATED DEFB112 WILD-TYPE
  FEMALE               1                92
  MALE                 3                76
D101V8, continuous
[1] "Remove cluster labels:" "DEFB112 MUTATED"       
clus
  DEFB112 MUTATED DEFB112 WILD-TYPE 
                1                11 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-64-1677 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-64-5778        TCGA-71-6725        TCGA-73-4659        TCGA-73-4662 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4676        TCGA-75-5122 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  DEFB112 MUTATED                            1
  DEFB112 WILD-TYPE                          1
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  DEFB112 MUTATED                                   0
  DEFB112 WILD-TYPE                                39
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  DEFB112 MUTATED                                                    3
  DEFB112 WILD-TYPE                                                112
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  DEFB112 MUTATED                                            0
  DEFB112 WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  DEFB112 MUTATED                                               0
  DEFB112 WILD-TYPE                                             2
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  DEFB112 MUTATED                                0
  DEFB112 WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  DEFB112 MUTATED                                    0
  DEFB112 WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  DEFB112 MUTATED                              0                             0
  DEFB112 WILD-TYPE                            2                             4
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  DEFB112 MUTATED                                               0
  DEFB112 WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  DEFB112 MUTATED                              0
  DEFB112 WILD-TYPE                            2
D101V9, multiclass
D101V10, binary
                   cls
clus                  0   1
  DEFB112 MUTATED     2   2
  DEFB112 WILD-TYPE  12 156
[1] "tbl2"
                   cls
clus                [,1] [,2]
  DEFB112 MUTATED      2    2
  DEFB112 WILD-TYPE   12  156
     clus
vv    DEFB112 MUTATED DEFB112 WILD-TYPE
  NO                2                12
  YES               2               156
D101V11, continuous
D101V12, continuous
                   vv
clus                 R0  R1  R2  RX
  DEFB112 MUTATED     3   0   0   0
  DEFB112 WILD-TYPE 112   6   4   9
D101V13, multiclass
    clus
vv   DEFB112 MUTATED DEFB112 WILD-TYPE
  R0               3               112
  R1               0                 6
  R2               0                 4
  RX               0                 9

Clustering(102) Variable = ARID2 MUTATION ANALYSIS
D102V1, survival
                 sevent
clus2              0  1
  ARID2 MUTATED    6  6
  ARID2 WILD-TYPE 93 50
  ARID2 MUTATED ARID2 WILD-TYPE 
             12             143 
  ARID2 MUTATED ARID2 WILD-TYPE 
              6              50 
$`ARID2 MUTATED`
TCGA-05-4396 TCGA-05-4397 TCGA-35-3615 TCGA-38-4631 TCGA-44-2657 TCGA-44-3398 
        9.96        24.03         0.46        11.64        13.15        38.24 
TCGA-50-5931 TCGA-50-6592 TCGA-64-1680 TCGA-67-6217 TCGA-73-4658 TCGA-73-4675 
        8.78        25.51        37.02        13.87        52.57         1.32 

$`ARID2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-4122 
        4.96        28.96        22.03         0.99         2.04         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        97.74       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       28.37        35.28        44.61        14.73        21.93        46.98 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       44.94        24.36        42.08        42.77         3.19         8.09 
TCGA-44-3396 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
       37.15        23.51         6.21        23.74        13.71        12.59 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
       13.38        10.78         9.93        27.78        11.90         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
       12.16        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46         5.16        55.89        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        29.26        17.13        20.48        71.47        70.55 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81        31.04        49.28         8.05         9.27 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12        18.64 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6593 
       29.00        25.12        22.55        42.31         3.88        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       20.65        39.09        87.98         2.04        42.90        28.41 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       51.25        28.44         0.99        20.02        18.84        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-71-6725 TCGA-73-4659 TCGA-73-4662 
       12.66         5.69         4.60         2.01        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 
       26.27        15.35         4.27         5.39         1.25        12.36 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       10.62        41.33        10.16         2.60        13.71 

  ARID2 MUTATED ARID2 WILD-TYPE 
           0.46            0.07 
  ARID2 MUTATED ARID2 WILD-TYPE 
          52.57          120.79 
  ARID2 MUTATED ARID2 WILD-TYPE 
          13.51           21.47 
[1] "0.5 - 52.6 (13.5)"  "0.1 - 120.8 (21.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE"   "ARID2 MUTATED"   "ARID2 MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE"   "ARID2 MUTATED" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"ARID2 WILD-TYPE"   "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE"   "ARID2 MUTATED" "ARID2 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE"   "ARID2 MUTATED" "ARID2 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
  "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
  "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
  "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE"   "ARID2 MUTATED" "ARID2 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
  "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE"   "ARID2 MUTATED" "ARID2 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE"   "ARID2 MUTATED"   "ARID2 MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE"   "ARID2 MUTATED" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"ARID2 WILD-TYPE"   "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE"   "ARID2 MUTATED" "ARID2 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE"   "ARID2 MUTATED" "ARID2 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
  "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
  "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
  "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE"   "ARID2 MUTATED" "ARID2 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
  "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE"   "ARID2 MUTATED" "ARID2 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE"   "ARID2 MUTATED"   "ARID2 MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE"   "ARID2 MUTATED" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"ARID2 WILD-TYPE"   "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE"   "ARID2 MUTATED" "ARID2 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE"   "ARID2 MUTATED" "ARID2 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
  "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
  "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
  "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE"   "ARID2 MUTATED" "ARID2 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
  "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE"   "ARID2 MUTATED" "ARID2 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
[1] "hr=" "1.8"
D102V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  ARID2 MUTATED          1        6         1         1          1          1
  ARID2 WILD-TYPE       36       47        10        22         32          5
                 vv
clus              STAGE IV
  ARID2 MUTATED          1
  ARID2 WILD-TYPE        8
D102V3, multiclass
                 vv
clus               T1  T2  T3  T4
  ARID2 MUTATED     1   9   1   1
  ARID2 WILD-TYPE  40 100  13   7
D102V4, multiclass
    clus
vv   ARID2 MUTATED ARID2 WILD-TYPE
  T1             1              40
  T2             9             100
  T3             1              13
  T4             1               7
                 vv
clus              N0 N1 N2+N3
  ARID2 MUTATED    6  4     1
  ARID2 WILD-TYPE 89 33    34
D102V5, multiclass
       clus
vv      ARID2 MUTATED ARID2 WILD-TYPE
  N0                6              89
  N1                4              33
  N2+N3             1              34
                 vv
clus               M0  M1  MX
  ARID2 MUTATED    11   1   0
  ARID2 WILD-TYPE 132   8  18
D102V6, multiclass
    clus
vv   ARID2 MUTATED ARID2 WILD-TYPE
  M0            11             132
  M1             1               8
  MX             0              18
D102V7, binary
                 cls
clus               0  1
  ARID2 MUTATED    7  5
  ARID2 WILD-TYPE 86 74
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ARID2 MUTATED      7    5
  ARID2 WILD-TYPE   86   74
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  FEMALE             7              86
  MALE               5              74
D102V8, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  ARID2 MUTATED                            0                                 3
  ARID2 WILD-TYPE                          2                                36
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ARID2 MUTATED                                                    9
  ARID2 WILD-TYPE                                                106
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  ARID2 MUTATED                                            0
  ARID2 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  ARID2 MUTATED                                               0
  ARID2 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  ARID2 MUTATED                                0
  ARID2 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  ARID2 MUTATED                                    0
  ARID2 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  ARID2 MUTATED                              0                             0
  ARID2 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  ARID2 MUTATED                                               0
  ARID2 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  ARID2 MUTATED                              0
  ARID2 WILD-TYPE                            2
D102V9, multiclass
D102V10, binary
                 cls
clus                0   1
  ARID2 MUTATED     1  11
  ARID2 WILD-TYPE  13 147
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ARID2 MUTATED      1   11
  ARID2 WILD-TYPE   13  147
     clus
vv    ARID2 MUTATED ARID2 WILD-TYPE
  NO              1              13
  YES            11             147
D102V11, continuous
D102V12, continuous
                 vv
clus               R0  R1  R2  RX
  ARID2 MUTATED    10   0   0   1
  ARID2 WILD-TYPE 105   6   4   8
D102V13, multiclass
    clus
vv   ARID2 MUTATED ARID2 WILD-TYPE
  R0            10             105
  R1             0               6
  R2             0               4
  RX             1               8

Clustering(103) Variable = ANKRD44 MUTATION ANALYSIS
D103V1, survival
                   sevent
clus2                0  1
  ANKRD44 MUTATED    3  4
  ANKRD44 WILD-TYPE 96 52
  ANKRD44 MUTATED ANKRD44 WILD-TYPE 
                7               148 
  ANKRD44 MUTATED ANKRD44 WILD-TYPE 
                4                52 
$`ANKRD44 MUTATED`
TCGA-05-4396 TCGA-38-4631 TCGA-38-4632 TCGA-44-6144 TCGA-49-6745 TCGA-50-6590 
        9.96        11.64        44.61        13.38        17.13        42.31 
TCGA-67-3771 
       20.02 

$`ANKRD44 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 
       15.02         4.96        28.96        22.03         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        97.74       120.79 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-6178 TCGA-44-2655 
       37.71        49.02        28.37        35.28        14.73        21.93 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       46.98        13.15        44.94        24.36        42.08        42.77 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        37.15        38.24        23.51         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       23.74        13.71        12.59        10.78         9.93        27.78 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
       11.90         5.42        12.16        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46         5.16 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-50-5044 TCGA-50-5045 
       55.89        15.02        12.13        29.26        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       70.55        14.96        25.81        31.04        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 
       15.12        18.64        29.00        25.12        22.55         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        87.98 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        2.04        42.90        28.41        51.25        28.44         0.99 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
       18.84        14.04        12.66         5.69         4.60        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        26.27        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 
        4.27         1.32         5.39         1.25        12.36        10.62 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33        10.16         2.60        13.71 

  ANKRD44 MUTATED ANKRD44 WILD-TYPE 
             9.96              0.07 
  ANKRD44 MUTATED ANKRD44 WILD-TYPE 
            44.61            120.79 
  ANKRD44 MUTATED ANKRD44 WILD-TYPE 
            17.13             21.70 
[1] "10.0 - 44.6 (17.1)" "0.1 - 120.8 (21.7)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE"   "ANKRD44 MUTATED" "ANKRD44 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"ANKRD44 WILD-TYPE"   "ANKRD44 MUTATED"   "ANKRD44 MUTATED" "ANKRD44 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
  "ANKRD44 MUTATED" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE"   "ANKRD44 MUTATED" "ANKRD44 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE"   "ANKRD44 MUTATED" "ANKRD44 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
  "ANKRD44 MUTATED" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE"   "ANKRD44 MUTATED" "ANKRD44 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"ANKRD44 WILD-TYPE"   "ANKRD44 MUTATED"   "ANKRD44 MUTATED" "ANKRD44 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
  "ANKRD44 MUTATED" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE"   "ANKRD44 MUTATED" "ANKRD44 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE"   "ANKRD44 MUTATED" "ANKRD44 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
  "ANKRD44 MUTATED" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE"   "ANKRD44 MUTATED" "ANKRD44 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"ANKRD44 WILD-TYPE"   "ANKRD44 MUTATED"   "ANKRD44 MUTATED" "ANKRD44 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
  "ANKRD44 MUTATED" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE"   "ANKRD44 MUTATED" "ANKRD44 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE"   "ANKRD44 MUTATED" "ANKRD44 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
  "ANKRD44 MUTATED" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
[1] "hr=" "1.8"
D103V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  ANKRD44 MUTATED          2        3         0         0          2          1
  ANKRD44 WILD-TYPE       35       50        11        23         31          5
                   vv
clus                STAGE IV
  ANKRD44 MUTATED          1
  ANKRD44 WILD-TYPE        8
D103V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  ANKRD44 MUTATED     2   5   1   1
  ANKRD44 WILD-TYPE  39 104  13   7
D103V4, multiclass
    clus
vv   ANKRD44 MUTATED ANKRD44 WILD-TYPE
  T1               2                39
  T2               5               104
  T3               1                13
  T4               1                 7
                   vv
clus                N0 N1 N2+N3
  ANKRD44 MUTATED    5  2     2
  ANKRD44 WILD-TYPE 90 35    33
D103V5, multiclass
       clus
vv      ANKRD44 MUTATED ANKRD44 WILD-TYPE
  N0                  5                90
  N1                  2                35
  N2+N3               2                33
                   vv
clus                 M0  M1  MX
  ANKRD44 MUTATED     8   1   0
  ANKRD44 WILD-TYPE 135   8  18
D103V6, multiclass
    clus
vv   ANKRD44 MUTATED ANKRD44 WILD-TYPE
  M0               8               135
  M1               1                 8
  MX               0                18
D103V7, binary
                   cls
clus                 0  1
  ANKRD44 MUTATED    4  5
  ANKRD44 WILD-TYPE 89 74
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ANKRD44 MUTATED      4    5
  ANKRD44 WILD-TYPE   89   74
        clus
vv       ANKRD44 MUTATED ANKRD44 WILD-TYPE
  FEMALE               4                89
  MALE                 5                74
D103V8, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  ANKRD44 MUTATED                            0
  ANKRD44 WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  ANKRD44 MUTATED                                   1
  ANKRD44 WILD-TYPE                                38
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ANKRD44 MUTATED                                                    7
  ANKRD44 WILD-TYPE                                                108
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  ANKRD44 MUTATED                                            0
  ANKRD44 WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  ANKRD44 MUTATED                                               0
  ANKRD44 WILD-TYPE                                             2
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  ANKRD44 MUTATED                                0
  ANKRD44 WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  ANKRD44 MUTATED                                    0
  ANKRD44 WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  ANKRD44 MUTATED                              0                             1
  ANKRD44 WILD-TYPE                            2                             3
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  ANKRD44 MUTATED                                               0
  ANKRD44 WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  ANKRD44 MUTATED                              0
  ANKRD44 WILD-TYPE                            2
D103V9, multiclass
D103V10, binary
                   cls
clus                  0   1
  ANKRD44 MUTATED     0   9
  ANKRD44 WILD-TYPE  14 149
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ANKRD44 MUTATED      0    9
  ANKRD44 WILD-TYPE   14  149
     clus
vv    ANKRD44 MUTATED ANKRD44 WILD-TYPE
  NO                0                14
  YES               9               149
D103V11, continuous
D103V12, continuous
[1] "Remove cluster labels:" "ANKRD44 MUTATED"       
clus
  ANKRD44 MUTATED ANKRD44 WILD-TYPE 
                2                66 
       TCGA-05-4384        TCGA-05-4390        TCGA-05-4405        TCGA-05-4410 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4424        TCGA-05-4427 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-05-4433        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-05-5428        TCGA-35-4122        TCGA-35-4123        TCGA-35-5375 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-38-4625        TCGA-38-4626        TCGA-44-2655        TCGA-44-2656 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2662        TCGA-44-2666 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5645        TCGA-44-6145        TCGA-44-6147 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4505        TCGA-55-1592        TCGA-55-1594 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6642 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-64-5781        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6836 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
                   vv
clus                 R0  R1  R2  RX
  ANKRD44 MUTATED     5   0   1   1
  ANKRD44 WILD-TYPE 110   6   3   8
D103V13, multiclass
    clus
vv   ANKRD44 MUTATED ANKRD44 WILD-TYPE
  R0               5               110
  R1               0                 6
  R2               1                 3
  RX               1                 8

Clustering(104) Variable = OR4C16 MUTATION ANALYSIS
D104V1, survival
                  sevent
clus2               0  1
  OR4C16 MUTATED    9  5
  OR4C16 WILD-TYPE 90 51
  OR4C16 MUTATED OR4C16 WILD-TYPE 
              14              141 
  OR4C16 MUTATED OR4C16 WILD-TYPE 
               5               51 
$`OR4C16 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-44-4112 TCGA-49-4487 TCGA-49-6743 TCGA-50-5049 
       19.92         9.96        23.74        28.11        12.13        70.55 
TCGA-50-5066 TCGA-50-5941 TCGA-50-6592 TCGA-50-6594 TCGA-55-1595 TCGA-64-5781 
       31.04        18.64        25.51        12.16        48.62        51.25 
TCGA-71-6725 TCGA-91-6831 
        2.01        10.16 

$`OR4C16 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4397 
       50.07         3.98        14.01        45.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        4.96        28.96        22.03         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61        14.73 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       21.93        46.98        13.15        44.94        24.36        42.08 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       42.77         3.19         8.09        37.15        38.24        23.51 
TCGA-44-3919 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        6.21        13.71        12.59        13.38        10.78         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
       27.78        11.90         5.42        12.16        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       36.49        16.41        76.21        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46         5.16 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       55.89        15.02        29.26        17.13        20.48        71.47 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       14.96        25.81        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 
       35.87        77.88        21.47         8.45        15.12        29.00 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6593 TCGA-50-6595 
       25.12        22.55        42.31         3.88        11.05         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       33.37        23.05        38.73        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 
       87.98         2.04        42.90        28.41        28.44         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       20.02        18.84        14.04        12.66         5.69         4.60 
TCGA-67-6217 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
       13.87        52.57        23.38        29.95        26.27        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 
        4.27         1.32         5.39         1.25        12.36        10.62 
TCGA-91-6829 TCGA-91-6835 TCGA-91-6836 
       41.33         2.60        13.71 

  OR4C16 MUTATED OR4C16 WILD-TYPE 
            2.01             0.07 
  OR4C16 MUTATED OR4C16 WILD-TYPE 
           70.55           120.79 
  OR4C16 MUTATED OR4C16 WILD-TYPE 
           21.83            20.65 
[1] "2.0 - 70.5 (21.8)"  "0.1 - 120.8 (20.6)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"OR4C16 WILD-TYPE"   "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE"   "OR4C16 MUTATED" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
  "OR4C16 MUTATED" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
[1] "hr=" "1"  
D104V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  OR4C16 MUTATED          3        7         0         0          3          1
  OR4C16 WILD-TYPE       34       46        11        23         30          5
                  vv
clus               STAGE IV
  OR4C16 MUTATED          0
  OR4C16 WILD-TYPE        9
D104V3, multiclass
                  vv
clus                T1  T2  T3  T4
  OR4C16 MUTATED     3   9   1   1
  OR4C16 WILD-TYPE  38 100  13   7
D104V4, multiclass
    clus
vv   OR4C16 MUTATED OR4C16 WILD-TYPE
  T1              3               38
  T2              9              100
  T3              1               13
  T4              1                7
                  vv
clus               N0 N1 N2+N3
  OR4C16 MUTATED   10  1     3
  OR4C16 WILD-TYPE 85 36    32
D104V5, multiclass
       clus
vv      OR4C16 MUTATED OR4C16 WILD-TYPE
  N0                10               85
  N1                 1               36
  N2+N3              3               32
                  vv
clus                M0  M1  MX
  OR4C16 MUTATED    12   0   2
  OR4C16 WILD-TYPE 131   9  16
D104V6, multiclass
    clus
vv   OR4C16 MUTATED OR4C16 WILD-TYPE
  M0             12              131
  M1              0                9
  MX              2               16
D104V7, binary
                  cls
clus                0  1
  OR4C16 MUTATED    9  5
  OR4C16 WILD-TYPE 84 74
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4C16 MUTATED      9    5
  OR4C16 WILD-TYPE   84   74
        clus
vv       OR4C16 MUTATED OR4C16 WILD-TYPE
  FEMALE              9               84
  MALE                5               74
D104V8, continuous
[1] "Remove cluster labels:" "OR4C16 MUTATED"        
clus
  OR4C16 MUTATED OR4C16 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-64-5778       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR4C16 MUTATED                            0                                 4
  OR4C16 WILD-TYPE                          2                                35
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR4C16 MUTATED                                                    7
  OR4C16 WILD-TYPE                                                108
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR4C16 MUTATED                                            0
  OR4C16 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR4C16 MUTATED                                               0
  OR4C16 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  OR4C16 MUTATED                                2
  OR4C16 WILD-TYPE                              0
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  OR4C16 MUTATED                                    0
  OR4C16 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR4C16 MUTATED                              0                             1
  OR4C16 WILD-TYPE                            2                             3
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR4C16 MUTATED                                               0
  OR4C16 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  OR4C16 MUTATED                              0
  OR4C16 WILD-TYPE                            2
D104V9, multiclass
D104V10, binary
                  cls
clus                 0   1
  OR4C16 MUTATED     1  13
  OR4C16 WILD-TYPE  13 145
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4C16 MUTATED      1   13
  OR4C16 WILD-TYPE   13  145
     clus
vv    OR4C16 MUTATED OR4C16 WILD-TYPE
  NO               1               13
  YES             13              145
D104V11, continuous
D104V12, continuous
                  vv
clus                R0  R1  R2  RX
  OR4C16 MUTATED     6   0   0   1
  OR4C16 WILD-TYPE 109   6   4   8
D104V13, multiclass
    clus
vv   OR4C16 MUTATED OR4C16 WILD-TYPE
  R0              6              109
  R1              0                6
  R2              0                4
  RX              1                8

Clustering(105) Variable = EPS8L3 MUTATION ANALYSIS
D105V1, survival
                  sevent
clus2               0  1
  EPS8L3 MUTATED    2  1
  EPS8L3 WILD-TYPE 97 55
  EPS8L3 MUTATED EPS8L3 WILD-TYPE 
               3              152 
  EPS8L3 MUTATED EPS8L3 WILD-TYPE 
               1               55 
$`EPS8L3 MUTATED`
TCGA-35-4123 TCGA-55-1592 TCGA-91-6835 
        5.95        23.05         2.60 

$`EPS8L3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       21.99        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 
       15.02        15.02         4.96        28.96        22.03         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        2.04         0.46         7.36         8.68        97.74       120.79 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       14.73        21.93        46.98        13.15        44.94        24.36 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       42.08        42.77         3.19         8.09        37.15        38.24 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
       23.51         6.21        23.74        13.71        12.59        13.38 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
       10.78         9.93        27.78        11.90         5.42        12.16 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46         5.16        55.89        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       29.26        17.13        20.48        71.47        70.55        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81        31.04        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12        18.64 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
       29.00        25.12        22.55        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 
       11.05        12.16         6.21        33.37        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        87.98         2.04        42.90 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       28.41        51.25        28.44         0.99        20.02        18.84 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
       14.04        12.66         5.69         4.60        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        26.27        15.35         4.27 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 
        1.32         5.39         1.25        12.36        10.62        41.33 
TCGA-91-6831 TCGA-91-6836 
       10.16        13.71 

  EPS8L3 MUTATED EPS8L3 WILD-TYPE 
            2.60             0.07 
  EPS8L3 MUTATED EPS8L3 WILD-TYPE 
           23.05           120.79 
  EPS8L3 MUTATED EPS8L3 WILD-TYPE 
            5.95            21.06 
[1] "2.6 - 23.1 (6.0)"   "0.1 - 120.8 (21.1)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"EPS8L3 WILD-TYPE"   "EPS8L3 MUTATED" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"EPS8L3 WILD-TYPE"   "EPS8L3 MUTATED" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"EPS8L3 WILD-TYPE"   "EPS8L3 MUTATED" "EPS8L3 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"EPS8L3 WILD-TYPE"   "EPS8L3 MUTATED" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"EPS8L3 WILD-TYPE"   "EPS8L3 MUTATED" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"EPS8L3 WILD-TYPE"   "EPS8L3 MUTATED" "EPS8L3 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"EPS8L3 WILD-TYPE"   "EPS8L3 MUTATED" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"EPS8L3 WILD-TYPE"   "EPS8L3 MUTATED" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"EPS8L3 WILD-TYPE"   "EPS8L3 MUTATED" "EPS8L3 WILD-TYPE" 
[1] "hr=" "2.8"
D105V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  EPS8L3 MUTATED          3        0         0         0          0          1
  EPS8L3 WILD-TYPE       34       53        11        23         33          5
                  vv
clus               STAGE IV
  EPS8L3 MUTATED          0
  EPS8L3 WILD-TYPE        9
D105V3, multiclass
                  vv
clus                T1  T2  T3  T4
  EPS8L3 MUTATED     2   1   0   1
  EPS8L3 WILD-TYPE  39 108  14   7
D105V4, multiclass
    clus
vv   EPS8L3 MUTATED EPS8L3 WILD-TYPE
  T1              2               39
  T2              1              108
  T3              0               14
  T4              1                7
                  vv
clus               N0 N1 N2+N3
  EPS8L3 MUTATED    3  0     1
  EPS8L3 WILD-TYPE 92 37    34
D105V5, multiclass
       clus
vv      EPS8L3 MUTATED EPS8L3 WILD-TYPE
  N0                 3               92
  N1                 0               37
  N2+N3              1               34
                  vv
clus                M0  M1  MX
  EPS8L3 MUTATED     4   0   0
  EPS8L3 WILD-TYPE 139   9  18
D105V6, multiclass
    clus
vv   EPS8L3 MUTATED EPS8L3 WILD-TYPE
  M0              4              139
  M1              0                9
  MX              0               18
D105V7, binary
                  cls
clus                0  1
  EPS8L3 MUTATED    1  3
  EPS8L3 WILD-TYPE 92 76
[1] "tbl2"
                  cls
clus               [,1] [,2]
  EPS8L3 MUTATED      1    3
  EPS8L3 WILD-TYPE   92   76
        clus
vv       EPS8L3 MUTATED EPS8L3 WILD-TYPE
  FEMALE              1               92
  MALE                3               76
D105V8, continuous
[1] "Remove cluster labels:" "EPS8L3 MUTATED"        
clus
  EPS8L3 MUTATED EPS8L3 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-5375       TCGA-64-1677       TCGA-64-5778 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  EPS8L3 MUTATED                            0                                 1
  EPS8L3 WILD-TYPE                          2                                38
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  EPS8L3 MUTATED                                                    3
  EPS8L3 WILD-TYPE                                                112
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  EPS8L3 MUTATED                                            0
  EPS8L3 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  EPS8L3 MUTATED                                               0
  EPS8L3 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  EPS8L3 MUTATED                                0
  EPS8L3 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  EPS8L3 MUTATED                                    0
  EPS8L3 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  EPS8L3 MUTATED                              0                             0
  EPS8L3 WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  EPS8L3 MUTATED                                               0
  EPS8L3 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  EPS8L3 MUTATED                              0
  EPS8L3 WILD-TYPE                            2
D105V9, multiclass
D105V10, binary
                  cls
clus                 0   1
  EPS8L3 MUTATED     0   4
  EPS8L3 WILD-TYPE  14 154
[1] "tbl2"
                  cls
clus               [,1] [,2]
  EPS8L3 MUTATED      0    4
  EPS8L3 WILD-TYPE   14  154
     clus
vv    EPS8L3 MUTATED EPS8L3 WILD-TYPE
  NO               0               14
  YES              4              154
D105V11, continuous
[1] "Remove cluster labels:" "EPS8L3 MUTATED"        
clus
  EPS8L3 MUTATED EPS8L3 WILD-TYPE 
               2              110 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-05-4382 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4384       TCGA-05-4389       TCGA-05-4390       TCGA-05-4396 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4397       TCGA-05-4398       TCGA-05-4405       TCGA-05-4410 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-5428       TCGA-35-4122       TCGA-35-5375       TCGA-38-4625 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4629       TCGA-38-4631       TCGA-38-4632 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2666       TCGA-44-2668       TCGA-44-3396 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-3398       TCGA-44-3918       TCGA-44-4112       TCGA-44-5643 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-5645       TCGA-44-6144       TCGA-44-6145       TCGA-44-6146 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4490       TCGA-49-4494       TCGA-49-4505 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-49-4506       TCGA-49-4507       TCGA-49-4510       TCGA-49-4514 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-49-6742       TCGA-49-6743       TCGA-49-6744       TCGA-49-6745 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-49-6767       TCGA-50-5051       TCGA-50-5072       TCGA-50-5931 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-6590 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-6543       TCGA-64-1676       TCGA-64-1677 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-64-5774       TCGA-64-5775 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-64-5778       TCGA-64-5779       TCGA-64-5781       TCGA-64-5815 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-75-5122       TCGA-75-5125       TCGA-75-5126       TCGA-75-6203 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-75-6206       TCGA-75-6207       TCGA-75-6211       TCGA-80-5611 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-91-6829       TCGA-91-6836 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
D105V12, continuous
[1] "Remove cluster labels:" "EPS8L3 MUTATED"        
clus
  EPS8L3 MUTATED EPS8L3 WILD-TYPE 
               2               66 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4396       TCGA-05-4405 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4410       TCGA-05-4415       TCGA-05-4417       TCGA-05-4424 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4433       TCGA-05-5420       TCGA-05-5423 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-5425       TCGA-05-5428       TCGA-35-4122       TCGA-35-5375 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-38-4625       TCGA-38-4626       TCGA-44-2655       TCGA-44-2656 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2662       TCGA-44-2666 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5645       TCGA-44-6144       TCGA-44-6145 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-6147       TCGA-44-6148       TCGA-44-6774       TCGA-44-6775 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-6776       TCGA-44-6777       TCGA-44-6778       TCGA-44-6779 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-49-4486       TCGA-49-4494       TCGA-49-4505       TCGA-55-1594 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-55-5899       TCGA-55-6642 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-64-5781       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-91-6829       TCGA-91-6836 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
                  vv
clus                R0  R1  R2  RX
  EPS8L3 MUTATED     4   0   0   0
  EPS8L3 WILD-TYPE 111   6   4   9
D105V13, multiclass
    clus
vv   EPS8L3 MUTATED EPS8L3 WILD-TYPE
  R0              4              111
  R1              0                6
  R2              0                4
  RX              0                9

Clustering(106) Variable = TARS2 MUTATION ANALYSIS
D106V1, survival
                 sevent
clus2              0  1
  TARS2 MUTATED    4  3
  TARS2 WILD-TYPE 95 53
  TARS2 MUTATED TARS2 WILD-TYPE 
              7             148 
  TARS2 MUTATED TARS2 WILD-TYPE 
              3              53 
$`TARS2 MUTATED`
TCGA-05-4250 TCGA-05-4389 TCGA-44-4112 TCGA-50-6594 TCGA-55-6642 TCGA-67-3771 
        3.98        45.01        23.74        12.16        32.61        20.02 
TCGA-91-6836 
       13.71 

$`TARS2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       50.07        19.92        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        4.96        28.96        22.03         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61        14.73 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       21.93        46.98        13.15        44.94        24.36        42.08 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       42.77         3.19         8.09        37.15        38.24        23.51 
TCGA-44-3919 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        6.21        13.71        12.59        13.38        10.78         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
       27.78        11.90         5.42        12.16        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
        5.16        55.89        15.02        12.13        29.26        17.13 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        70.55        14.96        25.81        31.04 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12        18.64        29.00        25.12 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 
       22.55        42.31         3.88        25.51        11.05         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
        0.07         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       87.98         2.04        42.90        28.41        51.25        28.44 
TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        0.99        18.84        14.04        12.66         5.69         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        26.27 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 
       15.35         4.27         1.32         5.39         1.25        12.36 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
       10.62        41.33        10.16         2.60 

  TARS2 MUTATED TARS2 WILD-TYPE 
           3.98            0.07 
  TARS2 MUTATED TARS2 WILD-TYPE 
          45.01          120.79 
  TARS2 MUTATED TARS2 WILD-TYPE 
          20.02           21.06 
[1] "4.0 - 45.0 (20.0)"  "0.1 - 120.8 (21.1)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TARS2 WILD-TYPE"   "TARS2 MUTATED" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
  "TARS2 MUTATED" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"TARS2 WILD-TYPE"   "TARS2 MUTATED" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE"   "TARS2 MUTATED" "TARS2 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE"   "TARS2 MUTATED" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "TARS2 MUTATED" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE"   "TARS2 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TARS2 WILD-TYPE"   "TARS2 MUTATED" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
  "TARS2 MUTATED" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"TARS2 WILD-TYPE"   "TARS2 MUTATED" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE"   "TARS2 MUTATED" "TARS2 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE"   "TARS2 MUTATED" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "TARS2 MUTATED" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE"   "TARS2 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TARS2 WILD-TYPE"   "TARS2 MUTATED" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
  "TARS2 MUTATED" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"TARS2 WILD-TYPE"   "TARS2 MUTATED" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE"   "TARS2 MUTATED" "TARS2 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE"   "TARS2 MUTATED" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "TARS2 MUTATED" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" "TARS2 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"TARS2 WILD-TYPE" "TARS2 WILD-TYPE"   "TARS2 MUTATED" 
[1] "hr=" "1.5"
D106V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  TARS2 MUTATED          2        4         0         0          2          0
  TARS2 WILD-TYPE       35       49        11        23         31          6
                 vv
clus              STAGE IV
  TARS2 MUTATED          0
  TARS2 WILD-TYPE        9
D106V3, multiclass
                 vv
clus               T1  T2  T3  T4
  TARS2 MUTATED     2   4   2   0
  TARS2 WILD-TYPE  39 105  12   8
D106V4, multiclass
    clus
vv   TARS2 MUTATED TARS2 WILD-TYPE
  T1             2              39
  T2             4             105
  T3             2              12
  T4             0               8
                 vv
clus              N0 N1 N2+N3
  TARS2 MUTATED    6  1     1
  TARS2 WILD-TYPE 89 36    34
D106V5, multiclass
       clus
vv      TARS2 MUTATED TARS2 WILD-TYPE
  N0                6              89
  N1                1              36
  N2+N3             1              34
                 vv
clus               M0  M1  MX
  TARS2 MUTATED     6   0   2
  TARS2 WILD-TYPE 137   9  16
D106V6, multiclass
    clus
vv   TARS2 MUTATED TARS2 WILD-TYPE
  M0             6             137
  M1             0               9
  MX             2              16
D106V7, binary
                 cls
clus               0  1
  TARS2 MUTATED    5  3
  TARS2 WILD-TYPE 88 76
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TARS2 MUTATED      5    3
  TARS2 WILD-TYPE   88   76
        clus
vv       TARS2 MUTATED TARS2 WILD-TYPE
  FEMALE             5              88
  MALE               3              76
D106V8, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  TARS2 MUTATED                            0                                 2
  TARS2 WILD-TYPE                          2                                37
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  TARS2 MUTATED                                                    6
  TARS2 WILD-TYPE                                                109
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  TARS2 MUTATED                                            0
  TARS2 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  TARS2 MUTATED                                               0
  TARS2 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  TARS2 MUTATED                                0
  TARS2 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  TARS2 MUTATED                                    0
  TARS2 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  TARS2 MUTATED                              0                             0
  TARS2 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  TARS2 MUTATED                                               0
  TARS2 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  TARS2 MUTATED                              0
  TARS2 WILD-TYPE                            2
D106V9, multiclass
D106V10, binary
                 cls
clus                0   1
  TARS2 MUTATED     0   8
  TARS2 WILD-TYPE  14 150
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TARS2 MUTATED      0    8
  TARS2 WILD-TYPE   14  150
     clus
vv    TARS2 MUTATED TARS2 WILD-TYPE
  NO              0              14
  YES             8             150
D106V11, continuous
D106V12, continuous
                 vv
clus               R0  R1  R2  RX
  TARS2 MUTATED     4   0   1   1
  TARS2 WILD-TYPE 111   6   3   8
D106V13, multiclass
    clus
vv   TARS2 MUTATED TARS2 WILD-TYPE
  R0             4             111
  R1             0               6
  R2             1               3
  RX             1               8

Clustering(107) Variable = SPEG MUTATION ANALYSIS
D107V1, survival
                sevent
clus2             0  1
  SPEG MUTATED   11  4
  SPEG WILD-TYPE 88 52
  SPEG MUTATED SPEG WILD-TYPE 
            15            140 
  SPEG MUTATED SPEG WILD-TYPE 
             4             52 
$`SPEG MUTATED`
TCGA-05-4382 TCGA-05-4427 TCGA-05-5428 TCGA-35-4123 TCGA-38-4626 TCGA-44-2656 
       19.92        26.01        22.03         5.95       120.79        46.98 
TCGA-49-4486 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5049 TCGA-55-1592 
       76.21        12.13        29.26        17.13        70.55        23.05 
TCGA-64-5775 TCGA-64-5781 TCGA-91-6829 
        2.04        51.25        41.33 

$`SPEG WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 
       50.07         3.98        14.01        45.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96        28.96         0.99         2.04         0.46         7.36 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
        8.68        97.74        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 
       11.64        44.61        14.73        21.93        13.15        44.94 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
       24.36        42.08        42.77         3.19         8.09        37.15 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
       38.24        23.51         6.21        23.74        13.71        12.59 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
       13.38        10.78         9.93        27.78        11.90         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4487 
       12.16        63.72        32.45        36.49        16.41        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-50-5044 
        8.81        29.46         5.16        55.89        15.02        20.48 
TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       71.47        14.96        25.81        31.04        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12        18.64        29.00        25.12        22.55        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        87.98 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       42.90        28.41        28.44         0.99        20.02        18.84 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
       14.04        12.66         5.69         4.60        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        26.27        15.35         4.27 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6831 
        1.32         5.39         1.25        12.36        10.62        10.16 
TCGA-91-6835 TCGA-91-6836 
        2.60        13.71 

  SPEG MUTATED SPEG WILD-TYPE 
          2.04           0.07 
  SPEG MUTATED SPEG WILD-TYPE 
        120.79          97.74 
  SPEG MUTATED SPEG WILD-TYPE 
        26.010         20.035 
[1] "2.0 - 120.8 (26.0)" "0.1 - 97.7 (20.0)" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"SPEG WILD-TYPE" "SPEG WILD-TYPE"   "SPEG MUTATED" "SPEG WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "SPEG MUTATED" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
  "SPEG MUTATED" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"SPEG WILD-TYPE"   "SPEG MUTATED" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
  "SPEG MUTATED" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"SPEG WILD-TYPE"   "SPEG MUTATED" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE"   "SPEG MUTATED" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
  "SPEG MUTATED"   "SPEG MUTATED"   "SPEG MUTATED" "SPEG WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"SPEG WILD-TYPE"   "SPEG MUTATED" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"SPEG WILD-TYPE"   "SPEG MUTATED" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"SPEG WILD-TYPE" "SPEG WILD-TYPE"   "SPEG MUTATED" "SPEG WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"SPEG WILD-TYPE"   "SPEG MUTATED" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE"   "SPEG MUTATED" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"SPEG WILD-TYPE" "SPEG WILD-TYPE"   "SPEG MUTATED" "SPEG WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "SPEG MUTATED" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
  "SPEG MUTATED" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"SPEG WILD-TYPE"   "SPEG MUTATED" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
  "SPEG MUTATED" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"SPEG WILD-TYPE"   "SPEG MUTATED" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE"   "SPEG MUTATED" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
  "SPEG MUTATED"   "SPEG MUTATED"   "SPEG MUTATED" "SPEG WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"SPEG WILD-TYPE"   "SPEG MUTATED" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"SPEG WILD-TYPE"   "SPEG MUTATED" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"SPEG WILD-TYPE" "SPEG WILD-TYPE"   "SPEG MUTATED" "SPEG WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"SPEG WILD-TYPE"   "SPEG MUTATED" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE"   "SPEG MUTATED" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"SPEG WILD-TYPE" "SPEG WILD-TYPE"   "SPEG MUTATED" "SPEG WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
  "SPEG MUTATED" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
  "SPEG MUTATED" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"SPEG WILD-TYPE"   "SPEG MUTATED" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
  "SPEG MUTATED" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"SPEG WILD-TYPE"   "SPEG MUTATED" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE"   "SPEG MUTATED" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
  "SPEG MUTATED"   "SPEG MUTATED"   "SPEG MUTATED" "SPEG WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"SPEG WILD-TYPE"   "SPEG MUTATED" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"SPEG WILD-TYPE"   "SPEG MUTATED" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"SPEG WILD-TYPE" "SPEG WILD-TYPE"   "SPEG MUTATED" "SPEG WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"SPEG WILD-TYPE"   "SPEG MUTATED" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE"   "SPEG MUTATED" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
[1] "hr=" "2.3"
D107V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  SPEG MUTATED          4        4         3         1          4          0
  SPEG WILD-TYPE       33       49         8        22         29          6
                vv
clus             STAGE IV
  SPEG MUTATED          0
  SPEG WILD-TYPE        9
D107V3, multiclass
                vv
clus             T1 T2 T3 T4
  SPEG MUTATED    4 10  1  1
  SPEG WILD-TYPE 37 99 13  7
D107V4, multiclass
    clus
vv   SPEG MUTATED SPEG WILD-TYPE
  T1            4             37
  T2           10             99
  T3            1             13
  T4            1              7
                vv
clus             N0 N1 N2+N3
  SPEG MUTATED   10  3     3
  SPEG WILD-TYPE 85 34    32
D107V5, multiclass
       clus
vv      SPEG MUTATED SPEG WILD-TYPE
  N0              10             85
  N1               3             34
  N2+N3            3             32
                vv
clus              M0  M1  MX
  SPEG MUTATED    13   0   3
  SPEG WILD-TYPE 130   9  15
D107V6, multiclass
    clus
vv   SPEG MUTATED SPEG WILD-TYPE
  M0           13            130
  M1            0              9
  MX            3             15
D107V7, binary
                cls
clus              0  1
  SPEG MUTATED    6 10
  SPEG WILD-TYPE 87 69
[1] "tbl2"
                cls
clus             [,1] [,2]
  SPEG MUTATED      6   10
  SPEG WILD-TYPE   87   69
        clus
vv       SPEG MUTATED SPEG WILD-TYPE
  FEMALE            6             87
  MALE             10             69
D107V8, continuous
[1] "Remove cluster labels:" "SPEG MUTATED"          
clus
  SPEG MUTATED SPEG WILD-TYPE 
             1             11 
    TCGA-35-4122     TCGA-35-5375     TCGA-64-1677     TCGA-64-5778 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-71-6725     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4676     TCGA-75-5122 
"SPEG WILD-TYPE" "SPEG WILD-TYPE" "SPEG WILD-TYPE" 
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  SPEG MUTATED                            0                                 5
  SPEG WILD-TYPE                          2                                34
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SPEG MUTATED                                                    8
  SPEG WILD-TYPE                                                107
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  SPEG MUTATED                                            0
  SPEG WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  SPEG MUTATED                                               1
  SPEG WILD-TYPE                                             1
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  SPEG MUTATED                                1
  SPEG WILD-TYPE                              1
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  SPEG MUTATED                                    0
  SPEG WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  SPEG MUTATED                              0                             1
  SPEG WILD-TYPE                            2                             3
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  SPEG MUTATED                                               0
  SPEG WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  SPEG MUTATED                              0
  SPEG WILD-TYPE                            2
D107V9, multiclass
D107V10, binary
                cls
clus               0   1
  SPEG MUTATED     1  15
  SPEG WILD-TYPE  13 143
[1] "tbl2"
                cls
clus             [,1] [,2]
  SPEG MUTATED      1   15
  SPEG WILD-TYPE   13  143
     clus
vv    SPEG MUTATED SPEG WILD-TYPE
  NO             1             13
  YES           15            143
D107V11, continuous
D107V12, continuous
                vv
clus              R0  R1  R2  RX
  SPEG MUTATED    11   0   1   0
  SPEG WILD-TYPE 104   6   3   9
D107V13, multiclass
    clus
vv   SPEG MUTATED SPEG WILD-TYPE
  R0           11            104
  R1            0              6
  R2            1              3
  RX            0              9

Clustering(108) Variable = GPR174 MUTATION ANALYSIS
D108V1, survival
                  sevent
clus2               0  1
  GPR174 MUTATED    4  2
  GPR174 WILD-TYPE 95 54
  GPR174 MUTATED GPR174 WILD-TYPE 
               6              149 
  GPR174 MUTATED GPR174 WILD-TYPE 
               2               54 
$`GPR174 MUTATED`
TCGA-05-4405 TCGA-38-4626 TCGA-49-6743 TCGA-50-5931 TCGA-50-6597 TCGA-91-6829 
       20.05       120.79        12.13         8.78        33.37        41.33 

$`GPR174 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4415 
        9.96        24.03        47.05         8.02        19.00         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 
       15.02         4.96        28.96        22.03         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 
        0.46         7.36         5.95         8.68        97.74        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61        14.73 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       21.93        46.98        13.15        44.94        24.36        42.08 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       42.77         3.19         8.09        37.15        38.24        23.51 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21        23.74        13.71        12.59        13.38        10.78 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93        27.78        11.90         5.42        12.16        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 
       29.46         5.16        55.89        15.02        29.26        17.13 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        70.55        14.96        25.81        31.04 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
       49.28         8.05         9.27        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12        18.64        29.00        25.12        22.55 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       87.98         2.04        42.90        28.41        51.25        28.44 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99        20.02        18.84        14.04        12.66         5.69 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        4.60        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       26.27        15.35         4.27         1.32         5.39         1.25 
TCGA-86-6562 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       12.36        10.62        10.16         2.60        13.71 

  GPR174 MUTATED GPR174 WILD-TYPE 
            8.78             0.07 
  GPR174 MUTATED GPR174 WILD-TYPE 
          120.79            97.74 
  GPR174 MUTATED GPR174 WILD-TYPE 
           26.71            20.65 
[1] "8.8 - 120.8 (26.7)" "0.1 - 97.7 (20.6)" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
  "GPR174 MUTATED" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
  "GPR174 MUTATED" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
  "GPR174 MUTATED" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
  "GPR174 MUTATED" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
  "GPR174 MUTATED" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
  "GPR174 MUTATED" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
  "GPR174 MUTATED" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
  "GPR174 MUTATED" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
  "GPR174 MUTATED" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
  "GPR174 MUTATED" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
  "GPR174 MUTATED" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
  "GPR174 MUTATED" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE"   "GPR174 MUTATED" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"GPR174 WILD-TYPE" "GPR174 WILD-TYPE" "GPR174 WILD-TYPE" 
[1] "hr=" "1.6"
D108V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  GPR174 MUTATED          0        4         1         0          1          0
  GPR174 WILD-TYPE       37       49        10        23         32          6
                  vv
clus               STAGE IV
  GPR174 MUTATED          0
  GPR174 WILD-TYPE        9
D108V3, multiclass
                  vv
clus                T1  T2  T3  T4
  GPR174 MUTATED     1   5   0   0
  GPR174 WILD-TYPE  40 104  14   8
D108V4, multiclass
    clus
vv   GPR174 MUTATED GPR174 WILD-TYPE
  T1              1               40
  T2              5              104
  T3              0               14
  T4              0                8
                  vv
clus               N0 N1 N2+N3
  GPR174 MUTATED    5  0     1
  GPR174 WILD-TYPE 90 37    34
D108V5, multiclass
       clus
vv      GPR174 MUTATED GPR174 WILD-TYPE
  N0                 5               90
  N1                 0               37
  N2+N3              1               34
                  vv
clus                M0  M1  MX
  GPR174 MUTATED     4   0   2
  GPR174 WILD-TYPE 139   9  16
D108V6, multiclass
    clus
vv   GPR174 MUTATED GPR174 WILD-TYPE
  M0              4              139
  M1              0                9
  MX              2               16
D108V7, binary
                  cls
clus                0  1
  GPR174 MUTATED    5  1
  GPR174 WILD-TYPE 88 78
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GPR174 MUTATED      5    1
  GPR174 WILD-TYPE   88   78
        clus
vv       GPR174 MUTATED GPR174 WILD-TYPE
  FEMALE              5               88
  MALE                1               78
D108V8, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  GPR174 MUTATED                            0                                 1
  GPR174 WILD-TYPE                          2                                38
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  GPR174 MUTATED                                                    3
  GPR174 WILD-TYPE                                                112
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  GPR174 MUTATED                                            0
  GPR174 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  GPR174 MUTATED                                               1
  GPR174 WILD-TYPE                                             1
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  GPR174 MUTATED                                1
  GPR174 WILD-TYPE                              1
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  GPR174 MUTATED                                    0
  GPR174 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  GPR174 MUTATED                              0                             0
  GPR174 WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  GPR174 MUTATED                                               0
  GPR174 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  GPR174 MUTATED                              0
  GPR174 WILD-TYPE                            2
D108V9, multiclass
D108V10, binary
                  cls
clus                 0   1
  GPR174 MUTATED     0   6
  GPR174 WILD-TYPE  14 152
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GPR174 MUTATED      0    6
  GPR174 WILD-TYPE   14  152
     clus
vv    GPR174 MUTATED GPR174 WILD-TYPE
  NO               0               14
  YES              6              152
D108V11, continuous
D108V12, continuous
                  vv
clus                R0  R1  R2  RX
  GPR174 MUTATED     5   0   0   0
  GPR174 WILD-TYPE 110   6   4   9
D108V13, multiclass
    clus
vv   GPR174 MUTATED GPR174 WILD-TYPE
  R0              5              110
  R1              0                6
  R2              0                4
  RX              0                9

Clustering(109) Variable = KIF9 MUTATION ANALYSIS
D109V1, survival
                sevent
clus2             0  1
  KIF9 MUTATED    4  2
  KIF9 WILD-TYPE 95 54
  KIF9 MUTATED KIF9 WILD-TYPE 
             6            149 
  KIF9 MUTATED KIF9 WILD-TYPE 
             2             54 
$`KIF9 MUTATED`
TCGA-05-4396 TCGA-05-4420 TCGA-38-4626 TCGA-50-5051 TCGA-64-1678 TCGA-91-6836 
        9.96        29.95       120.79        14.96        39.09        13.71 

$`KIF9 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
       14.93         8.98        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        4.96        28.96        22.03         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 
        7.36         5.95         8.68        97.74        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61        14.73        21.93 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       46.98        13.15        44.94        24.36        42.08        42.77 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        37.15        38.24        23.51         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
       23.74        13.71        12.59        13.38        10.78         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
       27.78        11.90         5.42        12.16        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
        5.16        55.89        15.02        12.13        29.26        17.13 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       20.48        71.47        70.55        25.81        31.04        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12        18.64        29.00        25.12        22.55 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1680 
        0.07        32.61         0.79        56.81        20.65        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       87.98         2.04        42.90        28.41        51.25        28.44 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99        20.02        18.84        14.04        12.66         5.69 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        4.60        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       26.27        15.35         4.27         1.32         5.39         1.25 
TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
       12.36        10.62        41.33        10.16         2.60 

  KIF9 MUTATED KIF9 WILD-TYPE 
          9.96           0.07 
  KIF9 MUTATED KIF9 WILD-TYPE 
        120.79          97.74 
  KIF9 MUTATED KIF9 WILD-TYPE 
        22.455         20.650 
[1] "10.0 - 120.8 (22.5)" "0.1 - 97.7 (20.6)"  
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE"   "KIF9 MUTATED" "KIF9 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE"   "KIF9 MUTATED" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
  "KIF9 MUTATED" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE"   "KIF9 MUTATED" "KIF9 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE"   "KIF9 MUTATED" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE"   "KIF9 MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE"   "KIF9 MUTATED" "KIF9 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE"   "KIF9 MUTATED" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
  "KIF9 MUTATED" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE"   "KIF9 MUTATED" "KIF9 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE"   "KIF9 MUTATED" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE"   "KIF9 MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE"   "KIF9 MUTATED" "KIF9 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE"   "KIF9 MUTATED" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
  "KIF9 MUTATED" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE"   "KIF9 MUTATED" "KIF9 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE"   "KIF9 MUTATED" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE"   "KIF9 MUTATED" 
[1] "hr=" "1.6"
D109V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  KIF9 MUTATED          0        2         3         0          1          1
  KIF9 WILD-TYPE       37       51         8        23         32          5
                vv
clus             STAGE IV
  KIF9 MUTATED          0
  KIF9 WILD-TYPE        9
D109V3, multiclass
                vv
clus              T1  T2  T3  T4
  KIF9 MUTATED     0   6   0   1
  KIF9 WILD-TYPE  41 103  14   7
D109V4, multiclass
    clus
vv   KIF9 MUTATED KIF9 WILD-TYPE
  T1            0             41
  T2            6            103
  T3            0             14
  T4            1              7
                vv
clus             N0 N1 N2+N3
  KIF9 MUTATED    4  2     1
  KIF9 WILD-TYPE 91 35    34
D109V5, multiclass
       clus
vv      KIF9 MUTATED KIF9 WILD-TYPE
  N0               4             91
  N1               2             35
  N2+N3            1             34
                vv
clus              M0  M1  MX
  KIF9 MUTATED     6   0   1
  KIF9 WILD-TYPE 137   9  17
D109V6, multiclass
    clus
vv   KIF9 MUTATED KIF9 WILD-TYPE
  M0            6            137
  M1            0              9
  MX            1             17
D109V7, binary
                cls
clus              0  1
  KIF9 MUTATED    5  2
  KIF9 WILD-TYPE 88 77
[1] "tbl2"
                cls
clus             [,1] [,2]
  KIF9 MUTATED      5    2
  KIF9 WILD-TYPE   88   77
        clus
vv       KIF9 MUTATED KIF9 WILD-TYPE
  FEMALE            5             88
  MALE              2             77
D109V8, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  KIF9 MUTATED                            0                                 2
  KIF9 WILD-TYPE                          2                                37
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  KIF9 MUTATED                                                    4
  KIF9 WILD-TYPE                                                111
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  KIF9 MUTATED                                            0
  KIF9 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  KIF9 MUTATED                                               0
  KIF9 WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  KIF9 MUTATED                                0
  KIF9 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  KIF9 MUTATED                                    1
  KIF9 WILD-TYPE                                  1
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  KIF9 MUTATED                              0                             0
  KIF9 WILD-TYPE                            2                             4
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  KIF9 MUTATED                                               0
  KIF9 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  KIF9 MUTATED                              0
  KIF9 WILD-TYPE                            2
D109V9, multiclass
D109V10, binary
                cls
clus               0   1
  KIF9 MUTATED     0   7
  KIF9 WILD-TYPE  14 151
[1] "tbl2"
                cls
clus             [,1] [,2]
  KIF9 MUTATED      0    7
  KIF9 WILD-TYPE   14  151
     clus
vv    KIF9 MUTATED KIF9 WILD-TYPE
  NO             0             14
  YES            7            151
D109V11, continuous
D109V12, continuous
                vv
clus              R0  R1  R2  RX
  KIF9 MUTATED     6   0   0   0
  KIF9 WILD-TYPE 109   6   4   9
D109V13, multiclass
    clus
vv   KIF9 MUTATED KIF9 WILD-TYPE
  R0            6            109
  R1            0              6
  R2            0              4
  RX            0              9

Clustering(110) Variable = OR2T27 MUTATION ANALYSIS
D110V1, survival
                  sevent
clus2               0  1
  OR2T27 MUTATED    5  2
  OR2T27 WILD-TYPE 94 54
  OR2T27 MUTATED OR2T27 WILD-TYPE 
               7              148 
  OR2T27 MUTATED OR2T27 WILD-TYPE 
               2               54 
$`OR2T27 MUTATED`
TCGA-35-5375 TCGA-44-2659 TCGA-44-6778 TCGA-50-6590 TCGA-64-5781 TCGA-67-3771 
        8.68        44.94        36.49        42.31        51.25        20.02 
TCGA-73-4658 
       52.57 

$`OR2T27 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       21.99        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 
       15.02        15.02         4.96        28.96        22.03         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 
        2.04         0.46         7.36         5.95        97.74       120.79 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 
       14.73        21.93        46.98        13.15        24.36        42.08 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       42.77         3.19         8.09        37.15        38.24        23.51 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21        23.74        13.71        12.59        13.38        10.78 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93        27.78        11.90         5.42        12.16        63.72 
TCGA-44-6777 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       32.45        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
        5.16        55.89        15.02        12.13        29.26        17.13 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        70.55        14.96        25.81        31.04 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12        18.64        29.00        25.12 
TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       22.55         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 
       37.02        87.98         2.04        42.90        28.41        28.44 
TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        0.99        18.84        14.04        12.66         5.69         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
       13.87         2.01        23.38        29.95        26.27        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 
        4.27         1.32         5.39         1.25        12.36        10.62 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33        10.16         2.60        13.71 

  OR2T27 MUTATED OR2T27 WILD-TYPE 
            8.68             0.07 
  OR2T27 MUTATED OR2T27 WILD-TYPE 
           52.57           120.79 
  OR2T27 MUTATED OR2T27 WILD-TYPE 
          42.310           20.265 
[1] "8.7 - 52.6 (42.3)"  "0.1 - 120.8 (20.3)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE"   "OR2T27 MUTATED" "OR2T27 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE"   "OR2T27 MUTATED" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"OR2T27 WILD-TYPE"   "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE"   "OR2T27 MUTATED" "OR2T27 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"OR2T27 WILD-TYPE"   "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
  "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
  "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE"   "OR2T27 MUTATED" "OR2T27 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE"   "OR2T27 MUTATED" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"OR2T27 WILD-TYPE"   "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE"   "OR2T27 MUTATED" "OR2T27 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"OR2T27 WILD-TYPE"   "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
  "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
  "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE"   "OR2T27 MUTATED" "OR2T27 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE"   "OR2T27 MUTATED" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"OR2T27 WILD-TYPE"   "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE"   "OR2T27 MUTATED" "OR2T27 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"OR2T27 WILD-TYPE"   "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
  "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
  "OR2T27 MUTATED" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
[1] "hr=" "2.2"
D110V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  OR2T27 MUTATED          2        4         0         1          1          0
  OR2T27 WILD-TYPE       35       49        11        22         32          6
                  vv
clus               STAGE IV
  OR2T27 MUTATED          0
  OR2T27 WILD-TYPE        9
D110V3, multiclass
                  vv
clus                T1  T2  T3  T4
  OR2T27 MUTATED     3   5   0   0
  OR2T27 WILD-TYPE  38 104  14   8
D110V4, multiclass
    clus
vv   OR2T27 MUTATED OR2T27 WILD-TYPE
  T1              3               38
  T2              5              104
  T3              0               14
  T4              0                8
                  vv
clus               N0 N1 N2+N3
  OR2T27 MUTATED    6  1     1
  OR2T27 WILD-TYPE 89 36    34
D110V5, multiclass
       clus
vv      OR2T27 MUTATED OR2T27 WILD-TYPE
  N0                 6               89
  N1                 1               36
  N2+N3              1               34
                  vv
clus                M0  M1  MX
  OR2T27 MUTATED     7   0   1
  OR2T27 WILD-TYPE 136   9  17
D110V6, multiclass
    clus
vv   OR2T27 MUTATED OR2T27 WILD-TYPE
  M0              7              136
  M1              0                9
  MX              1               17
D110V7, binary
                  cls
clus                0  1
  OR2T27 MUTATED    5  3
  OR2T27 WILD-TYPE 88 76
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR2T27 MUTATED      5    3
  OR2T27 WILD-TYPE   88   76
        clus
vv       OR2T27 MUTATED OR2T27 WILD-TYPE
  FEMALE              5               88
  MALE                3               76
D110V8, continuous
[1] "Remove cluster labels:" "OR2T27 MUTATED"        
clus
  OR2T27 MUTATED OR2T27 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-64-1677       TCGA-64-5778 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR2T27 MUTATED                            0                                 1
  OR2T27 WILD-TYPE                          2                                38
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR2T27 MUTATED                                                    7
  OR2T27 WILD-TYPE                                                108
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR2T27 MUTATED                                            0
  OR2T27 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR2T27 MUTATED                                               0
  OR2T27 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  OR2T27 MUTATED                                0
  OR2T27 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  OR2T27 MUTATED                                    0
  OR2T27 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR2T27 MUTATED                              0                             0
  OR2T27 WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR2T27 MUTATED                                               0
  OR2T27 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  OR2T27 MUTATED                              0
  OR2T27 WILD-TYPE                            2
D110V9, multiclass
D110V10, binary
                  cls
clus                 0   1
  OR2T27 MUTATED     0   8
  OR2T27 WILD-TYPE  14 150
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR2T27 MUTATED      0    8
  OR2T27 WILD-TYPE   14  150
     clus
vv    OR2T27 MUTATED OR2T27 WILD-TYPE
  NO               0               14
  YES              8              150
D110V11, continuous
D110V12, continuous
                  vv
clus                R0  R1  R2  RX
  OR2T27 MUTATED     6   0   0   0
  OR2T27 WILD-TYPE 109   6   4   9
D110V13, multiclass
    clus
vv   OR2T27 MUTATED OR2T27 WILD-TYPE
  R0              6              109
  R1              0                6
  R2              0                4
  RX              0                9

Clustering(111) Variable = CYP1A1 MUTATION ANALYSIS
D111V1, survival
                  sevent
clus2               0  1
  CYP1A1 MUTATED    3  1
  CYP1A1 WILD-TYPE 96 55
  CYP1A1 MUTATED CYP1A1 WILD-TYPE 
               4              151 
  CYP1A1 MUTATED CYP1A1 WILD-TYPE 
               1               55 
$`CYP1A1 MUTATED`
TCGA-05-4430 TCGA-55-1592 TCGA-67-3771 TCGA-73-4668 
       25.02        23.05        20.02        15.35 

$`CYP1A1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       21.99        26.01        26.01        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 
       15.02         4.96        28.96        22.03         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        97.74       120.79 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       14.73        21.93        46.98        13.15        44.94        24.36 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       42.08        42.77         3.19         8.09        37.15        38.24 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
       23.51         6.21        23.74        13.71        12.59        13.38 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
       10.78         9.93        27.78        11.90         5.42        12.16 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46         5.16        55.89        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       29.26        17.13        20.48        71.47        70.55        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81        31.04        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12        18.64 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
       29.00        25.12        22.55        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 
       11.05        12.16         6.21        33.37        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        87.98         2.04        42.90 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 
       28.41        51.25        28.44         0.99        18.84        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
       12.66         5.69         4.60        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       23.38        29.95        26.27         4.27         1.32         5.39 
TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.25        12.36        10.62        41.33        10.16         2.60 
TCGA-91-6836 
       13.71 

  CYP1A1 MUTATED CYP1A1 WILD-TYPE 
           15.35             0.07 
  CYP1A1 MUTATED CYP1A1 WILD-TYPE 
           25.02           120.79 
  CYP1A1 MUTATED CYP1A1 WILD-TYPE 
          21.535           20.650 
[1] "15.3 - 25.0 (21.5)" "0.1 - 120.8 (20.6)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CYP1A1 WILD-TYPE"   "CYP1A1 MUTATED" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"CYP1A1 WILD-TYPE"   "CYP1A1 MUTATED" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
  "CYP1A1 MUTATED" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
  "CYP1A1 MUTATED" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CYP1A1 WILD-TYPE"   "CYP1A1 MUTATED" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"CYP1A1 WILD-TYPE"   "CYP1A1 MUTATED" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
  "CYP1A1 MUTATED" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
  "CYP1A1 MUTATED" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CYP1A1 WILD-TYPE"   "CYP1A1 MUTATED" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"CYP1A1 WILD-TYPE"   "CYP1A1 MUTATED" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
  "CYP1A1 MUTATED" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
  "CYP1A1 MUTATED" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
[1] "hr=" "1.1"
D111V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  CYP1A1 MUTATED          2        1         0         1          0          0
  CYP1A1 WILD-TYPE       35       52        11        22         33          6
                  vv
clus               STAGE IV
  CYP1A1 MUTATED          0
  CYP1A1 WILD-TYPE        9
D111V3, multiclass
                  vv
clus                T1  T2  T3  T4
  CYP1A1 MUTATED     1   3   0   0
  CYP1A1 WILD-TYPE  40 106  14   8
D111V4, multiclass
    clus
vv   CYP1A1 MUTATED CYP1A1 WILD-TYPE
  T1              1               40
  T2              3              106
  T3              0               14
  T4              0                8
                  vv
clus               N0 N1 N2+N3
  CYP1A1 MUTATED    3  1     0
  CYP1A1 WILD-TYPE 92 36    35
D111V5, multiclass
       clus
vv      CYP1A1 MUTATED CYP1A1 WILD-TYPE
  N0                 3               92
  N1                 1               36
  N2+N3              0               35
                  vv
clus                M0  M1  MX
  CYP1A1 MUTATED     4   0   0
  CYP1A1 WILD-TYPE 139   9  18
D111V6, multiclass
    clus
vv   CYP1A1 MUTATED CYP1A1 WILD-TYPE
  M0              4              139
  M1              0                9
  MX              0               18
D111V7, binary
                  cls
clus                0  1
  CYP1A1 MUTATED    3  1
  CYP1A1 WILD-TYPE 90 78
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CYP1A1 MUTATED      3    1
  CYP1A1 WILD-TYPE   90   78
        clus
vv       CYP1A1 MUTATED CYP1A1 WILD-TYPE
  FEMALE              3               90
  MALE                1               78
D111V8, continuous
[1] "Remove cluster labels:" "CYP1A1 MUTATED"        
clus
  CYP1A1 MUTATED CYP1A1 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-64-5778       TCGA-71-6725       TCGA-73-4659       TCGA-73-4662 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-73-4666       TCGA-73-4676       TCGA-75-5122 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  CYP1A1 MUTATED                            0                                 1
  CYP1A1 WILD-TYPE                          2                                38
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CYP1A1 MUTATED                                                    2
  CYP1A1 WILD-TYPE                                                113
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  CYP1A1 MUTATED                                            0
  CYP1A1 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  CYP1A1 MUTATED                                               0
  CYP1A1 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  CYP1A1 MUTATED                                0
  CYP1A1 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  CYP1A1 MUTATED                                    1
  CYP1A1 WILD-TYPE                                  1
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  CYP1A1 MUTATED                              0                             0
  CYP1A1 WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  CYP1A1 MUTATED                                               0
  CYP1A1 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  CYP1A1 MUTATED                              0
  CYP1A1 WILD-TYPE                            2
D111V9, multiclass
D111V10, binary
                  cls
clus                 0   1
  CYP1A1 MUTATED     0   4
  CYP1A1 WILD-TYPE  14 154
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CYP1A1 MUTATED      0    4
  CYP1A1 WILD-TYPE   14  154
     clus
vv    CYP1A1 MUTATED CYP1A1 WILD-TYPE
  NO               0               14
  YES              4              154
D111V11, continuous
[1] "Remove cluster labels:" "CYP1A1 MUTATED"        
clus
  CYP1A1 MUTATED CYP1A1 WILD-TYPE 
               2              110 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-05-4382 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-4384       TCGA-05-4389       TCGA-05-4390       TCGA-05-4396 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-4397       TCGA-05-4398       TCGA-05-4405       TCGA-05-4410 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4432       TCGA-05-4433       TCGA-05-4434 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-5420       TCGA-05-5423       TCGA-05-5425       TCGA-05-5428 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4629       TCGA-38-4631       TCGA-38-4632 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-2662       TCGA-44-2666       TCGA-44-2668       TCGA-44-3396 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-3398       TCGA-44-3918       TCGA-44-4112       TCGA-44-5643 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-5645       TCGA-44-6144       TCGA-44-6145       TCGA-44-6146 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4490       TCGA-49-4494       TCGA-49-4505 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-49-4506       TCGA-49-4507       TCGA-49-4510       TCGA-49-4514 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-49-6742       TCGA-49-6743       TCGA-49-6744       TCGA-49-6745 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-49-6767       TCGA-50-5051       TCGA-50-5072       TCGA-50-5931 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-6590 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-6543       TCGA-64-1676       TCGA-64-1677 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-64-5774       TCGA-64-5775 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-64-5778       TCGA-64-5779       TCGA-64-5781       TCGA-64-5815 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-73-4670       TCGA-73-4675       TCGA-73-4676       TCGA-75-5122 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-75-5125       TCGA-75-5126       TCGA-75-6203       TCGA-75-6206 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-75-6207       TCGA-75-6211       TCGA-80-5611       TCGA-91-6829 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-91-6835       TCGA-91-6836 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
D111V12, continuous
[1] "Remove cluster labels:" "CYP1A1 MUTATED"        
clus
  CYP1A1 MUTATED CYP1A1 WILD-TYPE 
               2               66 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4396       TCGA-05-4405 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-4410       TCGA-05-4415       TCGA-05-4417       TCGA-05-4424 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4433       TCGA-05-5420       TCGA-05-5423 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-05-5425       TCGA-05-5428       TCGA-35-4122       TCGA-35-4123 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-35-5375       TCGA-38-4625       TCGA-38-4626       TCGA-44-2655 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2662 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3396       TCGA-44-3398 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-3918       TCGA-44-4112       TCGA-44-5645       TCGA-44-6144 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6147       TCGA-44-6148       TCGA-44-6774 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-6775       TCGA-44-6776       TCGA-44-6777       TCGA-44-6778 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-6779       TCGA-49-4486       TCGA-49-4494       TCGA-49-4505 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-55-1594       TCGA-55-1595       TCGA-55-1596       TCGA-55-5899 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-55-6642       TCGA-55-6712       TCGA-64-1677       TCGA-64-1678 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-73-4659       TCGA-73-4662 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-73-4666       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-91-6829       TCGA-91-6836 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
                  vv
clus                R0  R1  R2  RX
  CYP1A1 MUTATED     4   0   0   0
  CYP1A1 WILD-TYPE 111   6   4   9
D111V13, multiclass
    clus
vv   CYP1A1 MUTATED CYP1A1 WILD-TYPE
  R0              4              111
  R1              0                6
  R2              0                4
  RX              0                9

Clustering(112) Variable = C1ORF173 MUTATION ANALYSIS
D112V1, survival
                    sevent
clus2                 0  1
  C1ORF173 MUTATED   12 10
  C1ORF173 WILD-TYPE 87 46
  C1ORF173 MUTATED C1ORF173 WILD-TYPE 
                22                133 
  C1ORF173 MUTATED C1ORF173 WILD-TYPE 
                10                 46 
$`C1ORF173 MUTATED`
TCGA-05-4390 TCGA-05-4396 TCGA-05-4398 TCGA-05-4418 TCGA-05-4427 TCGA-05-4432 
       37.02         9.96        47.05         8.98        26.01        25.02 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4632 TCGA-44-2656 TCGA-44-2668 TCGA-44-3396 
        5.95         8.68        44.61        46.98         8.09        37.15 
TCGA-44-6776 TCGA-49-4501 TCGA-49-4506 TCGA-50-5933 TCGA-50-6590 TCGA-50-6593 
       63.72        46.72        32.84        77.88        42.31        11.05 
TCGA-64-5775 TCGA-64-5781 TCGA-67-3773 TCGA-91-6831 
        2.04        51.25        14.04        10.16 

$`C1ORF173 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4397 
       50.07         3.98        19.92        14.01        45.01        24.03 
TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4420 
        8.02        19.00        20.05         2.96        14.93        29.95 
TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4430 TCGA-05-4433 
       12.00        30.02        21.99        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 
       15.02        15.02         4.96        28.96        22.03         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        2.04         0.46         7.36        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-44-2655 
       49.02        28.37        35.28        11.64        14.73        21.93 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        44.94        24.36        42.08        42.77         3.19 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
       38.24        23.51         6.21        23.74        13.71        12.59 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
       13.38        10.78         9.93        27.78        11.90         5.42 
TCGA-44-6775 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       12.16        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4505 TCGA-49-4507 TCGA-49-4510 
       28.57        12.66        35.54        14.07         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
        5.16        55.89        15.02        12.13        29.26        17.13 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        70.55        14.96        25.81        31.04 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 
       49.28         8.05         9.27         8.78        35.87        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12        18.64        29.00        25.12        22.55 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
        3.88        25.51        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        87.98 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       42.90        28.41        28.44         0.99        20.02        18.84 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
       12.66         5.69         4.60        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        26.27        15.35         4.27         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6835 
        5.39         1.25        12.36        10.62        41.33         2.60 
TCGA-91-6836 
       13.71 

  C1ORF173 MUTATED C1ORF173 WILD-TYPE 
              2.04               0.07 
  C1ORF173 MUTATED C1ORF173 WILD-TYPE 
             77.88             120.79 
  C1ORF173 MUTATED C1ORF173 WILD-TYPE 
            29.425             20.050 
[1] "2.0 - 77.9 (29.4)"  "0.1 - 120.8 (20.1)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
  "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
  "C1ORF173 MUTATED"   "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-44-2655 
  "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
  "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED"   "C1ORF173 MUTATED" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5645 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-49-4486 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
  "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-50-5044         TCGA-50-5045         TCGA-50-5049 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-50-5051         TCGA-50-5055         TCGA-50-5066 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-50-5068         TCGA-50-5072         TCGA-50-5930 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-50-5931         TCGA-50-5932         TCGA-50-5933 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-50-5935         TCGA-50-5936         TCGA-50-5939 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-50-5941         TCGA-50-5942         TCGA-50-5944 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-50-5946         TCGA-50-6590         TCGA-50-6591 
"C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" 
        TCGA-50-6592         TCGA-50-6593         TCGA-50-6594 
"C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" 
        TCGA-50-6595         TCGA-50-6597         TCGA-55-1592 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-55-6712         TCGA-64-1676         TCGA-64-1677 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1680         TCGA-64-5774 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
  "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
  "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-67-6217         TCGA-71-6725         TCGA-73-4658 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-73-4659         TCGA-73-4662         TCGA-73-4666 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-73-4668         TCGA-73-4670         TCGA-73-4675 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-73-4676         TCGA-73-4677         TCGA-86-6562 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-91-6835         TCGA-91-6836 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
  "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
  "C1ORF173 MUTATED"   "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-44-2655 
  "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
  "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED"   "C1ORF173 MUTATED" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5645 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-49-4486 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
  "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-50-5044         TCGA-50-5045         TCGA-50-5049 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-50-5051         TCGA-50-5055         TCGA-50-5066 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-50-5068         TCGA-50-5072         TCGA-50-5930 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-50-5931         TCGA-50-5932         TCGA-50-5933 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-50-5935         TCGA-50-5936         TCGA-50-5939 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-50-5941         TCGA-50-5942         TCGA-50-5944 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-50-5946         TCGA-50-6590         TCGA-50-6591 
"C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" 
        TCGA-50-6592         TCGA-50-6593         TCGA-50-6594 
"C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" 
        TCGA-50-6595         TCGA-50-6597         TCGA-55-1592 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-55-6712         TCGA-64-1676         TCGA-64-1677 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1680         TCGA-64-5774 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
  "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
  "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-67-6217         TCGA-71-6725         TCGA-73-4658 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-73-4659         TCGA-73-4662         TCGA-73-4666 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-73-4668         TCGA-73-4670         TCGA-73-4675 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-73-4676         TCGA-73-4677         TCGA-86-6562 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-91-6835         TCGA-91-6836 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
  "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
  "C1ORF173 MUTATED"   "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-44-2655 
  "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
  "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED"   "C1ORF173 MUTATED" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5645 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-49-4486 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
  "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-50-5044         TCGA-50-5045         TCGA-50-5049 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-50-5051         TCGA-50-5055         TCGA-50-5066 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-50-5068         TCGA-50-5072         TCGA-50-5930 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-50-5931         TCGA-50-5932         TCGA-50-5933 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-50-5935         TCGA-50-5936         TCGA-50-5939 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-50-5941         TCGA-50-5942         TCGA-50-5944 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-50-5946         TCGA-50-6590         TCGA-50-6591 
"C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" 
        TCGA-50-6592         TCGA-50-6593         TCGA-50-6594 
"C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" 
        TCGA-50-6595         TCGA-50-6597         TCGA-55-1592 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-55-6712         TCGA-64-1676         TCGA-64-1677 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1680         TCGA-64-5774 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
  "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
  "C1ORF173 MUTATED" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-67-6217         TCGA-71-6725         TCGA-73-4658 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-73-4659         TCGA-73-4662         TCGA-73-4666 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-73-4668         TCGA-73-4670         TCGA-73-4675 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-73-4676         TCGA-73-4677         TCGA-86-6562 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE"   "C1ORF173 MUTATED" 
        TCGA-91-6835         TCGA-91-6836 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
[1] "hr=" "1"  
D112V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  C1ORF173 MUTATED          2       11         0         3          5
  C1ORF173 WILD-TYPE       35       42        11        20         28
                    vv
clus                 STAGE IIIB STAGE IV
  C1ORF173 MUTATED            3        1
  C1ORF173 WILD-TYPE          3        8
D112V3, multiclass
                    vv
clus                 T1 T2 T3 T4
  C1ORF173 MUTATED    3 17  1  4
  C1ORF173 WILD-TYPE 38 92 13  4
D112V4, multiclass
    clus
vv   C1ORF173 MUTATED C1ORF173 WILD-TYPE
  T1                3                 38
  T2               17                 92
  T3                1                 13
  T4                4                  4
                    vv
clus                 N0 N1 N2+N3
  C1ORF173 MUTATED   14  5     6
  C1ORF173 WILD-TYPE 81 32    29
D112V5, multiclass
       clus
vv      C1ORF173 MUTATED C1ORF173 WILD-TYPE
  N0                  14                 81
  N1                   5                 32
  N2+N3                6                 29
                    vv
clus                  M0  M1  MX
  C1ORF173 MUTATED    22   1   2
  C1ORF173 WILD-TYPE 121   8  16
D112V6, multiclass
    clus
vv   C1ORF173 MUTATED C1ORF173 WILD-TYPE
  M0               22                121
  M1                1                  8
  MX                2                 16
D112V7, binary
                    cls
clus                  0  1
  C1ORF173 MUTATED   11 14
  C1ORF173 WILD-TYPE 82 65
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C1ORF173 MUTATED     11   14
  C1ORF173 WILD-TYPE   82   65
        clus
vv       C1ORF173 MUTATED C1ORF173 WILD-TYPE
  FEMALE               11                 82
  MALE                 14                 65
D112V8, continuous
[1] "Remove cluster labels:" "C1ORF173 MUTATED"      
clus
  C1ORF173 MUTATED C1ORF173 WILD-TYPE 
                 2                 10 
        TCGA-35-4122         TCGA-64-1677         TCGA-64-5778 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4659         TCGA-73-4662 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-73-4676 
"C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" "C1ORF173 WILD-TYPE" 
        TCGA-75-5122 
"C1ORF173 WILD-TYPE" 
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  C1ORF173 MUTATED                            0
  C1ORF173 WILD-TYPE                          2
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  C1ORF173 MUTATED                                   9
  C1ORF173 WILD-TYPE                                30
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  C1ORF173 MUTATED                                                   16
  C1ORF173 WILD-TYPE                                                 99
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  C1ORF173 MUTATED                                            0
  C1ORF173 WILD-TYPE                                          1
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  C1ORF173 MUTATED                                               0
  C1ORF173 WILD-TYPE                                             2
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  C1ORF173 MUTATED                                0
  C1ORF173 WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  C1ORF173 MUTATED                                    0
  C1ORF173 WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  C1ORF173 MUTATED                              0                             0
  C1ORF173 WILD-TYPE                            2                             4
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  C1ORF173 MUTATED                                               0
  C1ORF173 WILD-TYPE                                             1
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  C1ORF173 MUTATED                              0
  C1ORF173 WILD-TYPE                            2
D112V9, multiclass
D112V10, binary
                    cls
clus                   0   1
  C1ORF173 MUTATED     1  24
  C1ORF173 WILD-TYPE  13 134
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C1ORF173 MUTATED      1   24
  C1ORF173 WILD-TYPE   13  134
     clus
vv    C1ORF173 MUTATED C1ORF173 WILD-TYPE
  NO                 1                 13
  YES               24                134
D112V11, continuous
D112V12, continuous
                    vv
clus                 R0 R1 R2 RX
  C1ORF173 MUTATED   18  1  0  1
  C1ORF173 WILD-TYPE 97  5  4  8
D112V13, multiclass
    clus
vv   C1ORF173 MUTATED C1ORF173 WILD-TYPE
  R0               18                 97
  R1                1                  5
  R2                0                  4
  RX                1                  8

Clustering(113) Variable = SH2D2A MUTATION ANALYSIS
D113V1, survival
                  sevent
clus2               0  1
  SH2D2A MUTATED    3  2
  SH2D2A WILD-TYPE 96 54
  SH2D2A MUTATED SH2D2A WILD-TYPE 
               5              150 
  SH2D2A MUTATED SH2D2A WILD-TYPE 
               2               54 
$`SH2D2A MUTATED`
TCGA-05-4396 TCGA-35-3615 TCGA-44-6147 TCGA-50-5051 TCGA-67-3771 
        9.96         0.46        27.78        14.96        20.02 

$`SH2D2A WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 
       15.02         4.96        28.96        22.03         0.99         2.04 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61        14.73 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       21.93        46.98        13.15        44.94        24.36        42.08 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       42.77         3.19         8.09        37.15        38.24        23.51 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21        23.74        13.71        12.59        13.38        10.78 
TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        9.93        11.90         5.42        12.16        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
        5.16        55.89        15.02        12.13        29.26        17.13 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       20.48        71.47        70.55        25.81        31.04        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12        18.64        29.00        25.12        22.55 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        87.98         2.04        42.90        28.41        51.25 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
       28.44         0.99        18.84        14.04        12.66         5.69 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        4.60        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       26.27        15.35         4.27         1.32         5.39         1.25 
TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       12.36        10.62        41.33        10.16         2.60        13.71 

  SH2D2A MUTATED SH2D2A WILD-TYPE 
            0.46             0.07 
  SH2D2A MUTATED SH2D2A WILD-TYPE 
           27.78           120.79 
  SH2D2A MUTATED SH2D2A WILD-TYPE 
           14.96            21.70 
[1] "0.5 - 27.8 (15.0)"  "0.1 - 120.8 (21.7)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE"   "SH2D2A MUTATED" "SH2D2A WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE"   "SH2D2A MUTATED" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE"   "SH2D2A MUTATED" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE"   "SH2D2A MUTATED" "SH2D2A WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
  "SH2D2A MUTATED" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE"   "SH2D2A MUTATED" "SH2D2A WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE"   "SH2D2A MUTATED" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE"   "SH2D2A MUTATED" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE"   "SH2D2A MUTATED" "SH2D2A WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
  "SH2D2A MUTATED" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE"   "SH2D2A MUTATED" "SH2D2A WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE"   "SH2D2A MUTATED" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE"   "SH2D2A MUTATED" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE"   "SH2D2A MUTATED" "SH2D2A WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
  "SH2D2A MUTATED" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
[1] "hr=" "2.2"
D113V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  SH2D2A MUTATED          2        1         0         0          2          1
  SH2D2A WILD-TYPE       35       52        11        23         31          5
                  vv
clus               STAGE IV
  SH2D2A MUTATED          0
  SH2D2A WILD-TYPE        9
D113V3, multiclass
                  vv
clus                T1  T2  T3  T4
  SH2D2A MUTATED     2   2   1   1
  SH2D2A WILD-TYPE  39 107  13   7
D113V4, multiclass
    clus
vv   SH2D2A MUTATED SH2D2A WILD-TYPE
  T1              2               39
  T2              2              107
  T3              1               13
  T4              1                7
                  vv
clus               N0 N1 N2+N3
  SH2D2A MUTATED    2  1     2
  SH2D2A WILD-TYPE 93 36    33
D113V5, multiclass
       clus
vv      SH2D2A MUTATED SH2D2A WILD-TYPE
  N0                 2               93
  N1                 1               36
  N2+N3              2               33
                  vv
clus                M0  M1  MX
  SH2D2A MUTATED     6   0   0
  SH2D2A WILD-TYPE 137   9  18
D113V6, multiclass
    clus
vv   SH2D2A MUTATED SH2D2A WILD-TYPE
  M0              6              137
  M1              0                9
  MX              0               18
D113V7, binary
                  cls
clus                0  1
  SH2D2A MUTATED    4  2
  SH2D2A WILD-TYPE 89 77
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SH2D2A MUTATED      4    2
  SH2D2A WILD-TYPE   89   77
        clus
vv       SH2D2A MUTATED SH2D2A WILD-TYPE
  FEMALE              4               89
  MALE                2               77
D113V8, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  SH2D2A MUTATED                            0                                 1
  SH2D2A WILD-TYPE                          2                                38
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SH2D2A MUTATED                                                    4
  SH2D2A WILD-TYPE                                                111
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  SH2D2A MUTATED                                            0
  SH2D2A WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  SH2D2A MUTATED                                               0
  SH2D2A WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  SH2D2A MUTATED                                0
  SH2D2A WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  SH2D2A MUTATED                                    0
  SH2D2A WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  SH2D2A MUTATED                              0                             1
  SH2D2A WILD-TYPE                            2                             3
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  SH2D2A MUTATED                                               0
  SH2D2A WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  SH2D2A MUTATED                              0
  SH2D2A WILD-TYPE                            2
D113V9, multiclass
D113V10, binary
                  cls
clus                 0   1
  SH2D2A MUTATED     0   6
  SH2D2A WILD-TYPE  14 152
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SH2D2A MUTATED      0    6
  SH2D2A WILD-TYPE   14  152
     clus
vv    SH2D2A MUTATED SH2D2A WILD-TYPE
  NO               0               14
  YES              6              152
D113V11, continuous
D113V12, continuous
[1] "Remove cluster labels:" "SH2D2A MUTATED"        
clus
  SH2D2A MUTATED SH2D2A WILD-TYPE 
               2               66 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4405       TCGA-05-4410 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4424       TCGA-05-4427 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-05-4433       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-05-5428       TCGA-35-4122       TCGA-35-4123       TCGA-35-5375 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-38-4625       TCGA-38-4626       TCGA-44-2655       TCGA-44-2656 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2662       TCGA-44-2666 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5645       TCGA-44-6144       TCGA-44-6145 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-49-4494       TCGA-49-4505       TCGA-55-1592       TCGA-55-1594 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-55-5899       TCGA-55-6642 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-64-5781       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-91-6829       TCGA-91-6836 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
                  vv
clus                R0  R1  R2  RX
  SH2D2A MUTATED     4   0   1   0
  SH2D2A WILD-TYPE 111   6   3   9
D113V13, multiclass
    clus
vv   SH2D2A MUTATED SH2D2A WILD-TYPE
  R0              4              111
  R1              0                6
  R2              1                3
  RX              0                9

Clustering(114) Variable = CD5L MUTATION ANALYSIS
D114V1, survival
                sevent
clus2             0  1
  CD5L MUTATED    5  5
  CD5L WILD-TYPE 94 51
  CD5L MUTATED CD5L WILD-TYPE 
            10            145 
  CD5L MUTATED CD5L WILD-TYPE 
             5             51 
$`CD5L MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4397 TCGA-44-2656 TCGA-49-4488 TCGA-50-5072 
       19.92         9.96        24.03        46.98        28.57         8.05 
TCGA-50-5933 TCGA-50-5941 TCGA-64-5778 TCGA-67-6215 
       77.88        18.64        42.90         5.69 

$`CD5L WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4398 
       50.07         3.98        14.01        45.01        37.02        47.05 
TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
        8.02        19.00        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
       29.95        12.00        30.02        21.99        26.01        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02        15.02         4.96 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
       28.96        22.03         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        97.74       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61        14.73        21.93 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        44.94        24.36        42.08        42.77         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        37.15        38.24        23.51         6.21        23.74 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       13.71        12.59        13.38        10.78         9.93        27.78 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
       11.90         5.42        12.16        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       16.41        76.21        28.11        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46         5.16        55.89 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        29.26        17.13        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5930 
       70.55        14.96        25.81        31.04        49.28         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 
        8.78        35.87        21.47         8.45        15.12        29.00 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       25.12        22.55        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 
       20.65        39.09        37.02        87.98         2.04        28.41 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       51.25        28.44         0.99        20.02        18.84        14.04 
TCGA-67-3774 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
       12.66         4.60        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        26.27        15.35         4.27         1.32         5.39 
TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.25        12.36        10.62        41.33        10.16         2.60 
TCGA-91-6836 
       13.71 

  CD5L MUTATED CD5L WILD-TYPE 
          5.69           0.07 
  CD5L MUTATED CD5L WILD-TYPE 
         77.88         120.79 
  CD5L MUTATED CD5L WILD-TYPE 
        21.975         20.650 
[1] "5.7 - 77.9 (22.0)"  "0.1 - 120.8 (20.6)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED"   "CD5L MUTATED" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
  "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED"   "CD5L MUTATED" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
  "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED"   "CD5L MUTATED" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
  "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
[1] "hr=" "1.1"
D114V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  CD5L MUTATED          1        6         0         1          2          2
  CD5L WILD-TYPE       36       47        11        22         31          4
                vv
clus             STAGE IV
  CD5L MUTATED          0
  CD5L WILD-TYPE        9
D114V3, multiclass
                vv
clus              T1  T2  T3  T4
  CD5L MUTATED     1   9   0   2
  CD5L WILD-TYPE  40 100  14   6
D114V4, multiclass
    clus
vv   CD5L MUTATED CD5L WILD-TYPE
  T1            1             40
  T2            9            100
  T3            0             14
  T4            2              6
                vv
clus             N0 N1 N2+N3
  CD5L MUTATED    7  2     3
  CD5L WILD-TYPE 88 35    32
D114V5, multiclass
       clus
vv      CD5L MUTATED CD5L WILD-TYPE
  N0               7             88
  N1               2             35
  N2+N3            3             32
                vv
clus              M0  M1  MX
  CD5L MUTATED    11   0   1
  CD5L WILD-TYPE 132   9  17
D114V6, multiclass
    clus
vv   CD5L MUTATED CD5L WILD-TYPE
  M0           11            132
  M1            0              9
  MX            1             17
D114V7, binary
                cls
clus              0  1
  CD5L MUTATED    4  8
  CD5L WILD-TYPE 89 71
[1] "tbl2"
                cls
clus             [,1] [,2]
  CD5L MUTATED      4    8
  CD5L WILD-TYPE   89   71
        clus
vv       CD5L MUTATED CD5L WILD-TYPE
  FEMALE            4             89
  MALE              8             71
D114V8, continuous
[1] "Remove cluster labels:" "CD5L MUTATED"          
clus
  CD5L MUTATED CD5L WILD-TYPE 
             1             11 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-64-1677 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-71-6725     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4676     TCGA-75-5122 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  CD5L MUTATED                            0                                 4
  CD5L WILD-TYPE                          2                                35
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CD5L MUTATED                                                    7
  CD5L WILD-TYPE                                                108
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  CD5L MUTATED                                            0
  CD5L WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  CD5L MUTATED                                               1
  CD5L WILD-TYPE                                             1
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  CD5L MUTATED                                0
  CD5L WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  CD5L MUTATED                                    0
  CD5L WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  CD5L MUTATED                              0                             0
  CD5L WILD-TYPE                            2                             4
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  CD5L MUTATED                                               0
  CD5L WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  CD5L MUTATED                              0
  CD5L WILD-TYPE                            2
D114V9, multiclass
D114V10, binary
                cls
clus               0   1
  CD5L MUTATED     2  10
  CD5L WILD-TYPE  12 148
[1] "tbl2"
                cls
clus             [,1] [,2]
  CD5L MUTATED      2   10
  CD5L WILD-TYPE   12  148
     clus
vv    CD5L MUTATED CD5L WILD-TYPE
  NO             2             12
  YES           10            148
D114V11, continuous
D114V12, continuous
                vv
clus              R0  R1  R2  RX
  CD5L MUTATED     7   0   0   1
  CD5L WILD-TYPE 108   6   4   8
D114V13, multiclass
    clus
vv   CD5L MUTATED CD5L WILD-TYPE
  R0            7            108
  R1            0              6
  R2            0              4
  RX            1              8

Clustering(115) Variable = ANKRD56 MUTATION ANALYSIS
D115V1, survival
                   sevent
clus2                0  1
  ANKRD56 MUTATED    8  2
  ANKRD56 WILD-TYPE 91 54
  ANKRD56 MUTATED ANKRD56 WILD-TYPE 
               10               145 
  ANKRD56 MUTATED ANKRD56 WILD-TYPE 
                2                54 
$`ANKRD56 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4398 TCGA-05-5420 TCGA-05-5423 TCGA-38-4631 
       19.92         9.96        47.05        15.02         4.96        11.64 
TCGA-55-1595 TCGA-55-6642 TCGA-64-5779 TCGA-64-5781 
       48.62        32.61        28.41        51.25 

$`ANKRD56 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4397 
       50.07         3.98        14.01        45.01        37.02        24.03 
TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
        8.02        19.00        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
       29.95        12.00        30.02        21.99        26.01        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5425 TCGA-05-5428 
       25.02        25.02        24.00        15.02        28.96        22.03 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       97.74       120.79        37.71        49.02        28.37        35.28 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61        14.73        21.93        46.98        13.15        44.94 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
       24.36        42.08        42.77         3.19         8.09        37.15 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
       38.24        23.51         6.21        23.74        13.71        12.59 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
       13.38        10.78         9.93        27.78        11.90         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
       12.16        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46         5.16        55.89        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        29.26        17.13        20.48        71.47        70.55 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81        31.04        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
       18.64        29.00        25.12        22.55        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6712 TCGA-64-1676 
       38.73        45.17         2.86         0.07         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        87.98         2.04        42.90 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       28.44         0.99        20.02        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        5.69         4.60        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        26.27        15.35         4.27         1.32         5.39 
TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.25        12.36        10.62        41.33        10.16         2.60 
TCGA-91-6836 
       13.71 

  ANKRD56 MUTATED ANKRD56 WILD-TYPE 
             4.96              0.07 
  ANKRD56 MUTATED ANKRD56 WILD-TYPE 
            51.25            120.79 
  ANKRD56 MUTATED ANKRD56 WILD-TYPE 
           24.165            20.650 
[1] "5.0 - 51.2 (24.2)"  "0.1 - 120.8 (20.6)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
  "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
  "ANKRD56 MUTATED"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
  "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
  "ANKRD56 MUTATED"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
  "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE"   "ANKRD56 MUTATED" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
  "ANKRD56 MUTATED"   "ANKRD56 MUTATED" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
[1] "hr=" "2.1"
D115V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  ANKRD56 MUTATED          1        4         0         1          3          2
  ANKRD56 WILD-TYPE       36       49        11        22         30          4
                   vv
clus                STAGE IV
  ANKRD56 MUTATED          0
  ANKRD56 WILD-TYPE        9
D115V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  ANKRD56 MUTATED     1   7   1   2
  ANKRD56 WILD-TYPE  40 102  13   6
D115V4, multiclass
    clus
vv   ANKRD56 MUTATED ANKRD56 WILD-TYPE
  T1               1                40
  T2               7               102
  T3               1                13
  T4               2                 6
                   vv
clus                N0 N1 N2+N3
  ANKRD56 MUTATED    5  2     4
  ANKRD56 WILD-TYPE 90 35    31
D115V5, multiclass
       clus
vv      ANKRD56 MUTATED ANKRD56 WILD-TYPE
  N0                  5                90
  N1                  2                35
  N2+N3               4                31
                   vv
clus                 M0  M1  MX
  ANKRD56 MUTATED    10   0   1
  ANKRD56 WILD-TYPE 133   9  17
D115V6, multiclass
    clus
vv   ANKRD56 MUTATED ANKRD56 WILD-TYPE
  M0              10               133
  M1               0                 9
  MX               1                17
D115V7, binary
                   cls
clus                 0  1
  ANKRD56 MUTATED    5  6
  ANKRD56 WILD-TYPE 88 73
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ANKRD56 MUTATED      5    6
  ANKRD56 WILD-TYPE   88   73
        clus
vv       ANKRD56 MUTATED ANKRD56 WILD-TYPE
  FEMALE               5                88
  MALE                 6                73
D115V8, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  ANKRD56 MUTATED                            1
  ANKRD56 WILD-TYPE                          1
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  ANKRD56 MUTATED                                   5
  ANKRD56 WILD-TYPE                                34
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ANKRD56 MUTATED                                                    3
  ANKRD56 WILD-TYPE                                                112
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  ANKRD56 MUTATED                                            0
  ANKRD56 WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  ANKRD56 MUTATED                                               0
  ANKRD56 WILD-TYPE                                             2
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  ANKRD56 MUTATED                                1
  ANKRD56 WILD-TYPE                              1
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  ANKRD56 MUTATED                                    0
  ANKRD56 WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  ANKRD56 MUTATED                              0                             1
  ANKRD56 WILD-TYPE                            2                             3
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  ANKRD56 MUTATED                                               0
  ANKRD56 WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  ANKRD56 MUTATED                              0
  ANKRD56 WILD-TYPE                            2
D115V9, multiclass
D115V10, binary
                   cls
clus                  0   1
  ANKRD56 MUTATED     1  10
  ANKRD56 WILD-TYPE  13 148
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ANKRD56 MUTATED      1   10
  ANKRD56 WILD-TYPE   13  148
     clus
vv    ANKRD56 MUTATED ANKRD56 WILD-TYPE
  NO                1                13
  YES              10               148
D115V11, continuous
D115V12, continuous
                   vv
clus                 R0  R1  R2  RX
  ANKRD56 MUTATED     9   0   1   0
  ANKRD56 WILD-TYPE 106   6   3   9
D115V13, multiclass
    clus
vv   ANKRD56 MUTATED ANKRD56 WILD-TYPE
  R0               9               106
  R1               0                 6
  R2               1                 3
  RX               0                 9

Clustering(116) Variable = HOXA5 MUTATION ANALYSIS
D116V1, survival
                 sevent
clus2              0  1
  HOXA5 MUTATED    5  1
  HOXA5 WILD-TYPE 94 55
  HOXA5 MUTATED HOXA5 WILD-TYPE 
              6             149 
  HOXA5 MUTATED HOXA5 WILD-TYPE 
              1              55 
$`HOXA5 MUTATED`
TCGA-38-4625 TCGA-38-4629 TCGA-44-6144 TCGA-55-5899 TCGA-55-6642 TCGA-64-1676 
       97.74        28.37        13.38         2.86        32.61        56.81 

$`HOXA5 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       21.99        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 
       15.02        15.02         4.96        28.96        22.03         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 
        2.04         0.46         7.36         5.95         8.68       120.79 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       37.71        49.02        35.28        11.64        44.61        14.73 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       21.93        46.98        13.15        44.94        24.36        42.08 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       42.77         3.19         8.09        37.15        38.24        23.51 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 
        6.21        23.74        13.71        12.59        10.78         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
       27.78        11.90         5.42        12.16        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
        5.16        55.89        15.02        12.13        29.26        17.13 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        70.55        14.96        25.81        31.04 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12        18.64        29.00        25.12 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       22.55        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-6543 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.07         0.79        20.65        39.09        37.02        87.98 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        2.04        42.90        28.41        51.25        28.44         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       20.02        18.84        14.04        12.66         5.69         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        26.27 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 
       15.35         4.27         1.32         5.39         1.25        12.36 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       10.62        41.33        10.16         2.60        13.71 

  HOXA5 MUTATED HOXA5 WILD-TYPE 
           2.86            0.07 
  HOXA5 MUTATED HOXA5 WILD-TYPE 
          97.74          120.79 
  HOXA5 MUTATED HOXA5 WILD-TYPE 
          30.49           20.48 
[1] "2.9 - 97.7 (30.5)"  "0.1 - 120.8 (20.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE"   "HOXA5 MUTATED" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE"   "HOXA5 MUTATED" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
  "HOXA5 MUTATED" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"HOXA5 WILD-TYPE"   "HOXA5 MUTATED" "HOXA5 WILD-TYPE"   "HOXA5 MUTATED" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"HOXA5 WILD-TYPE"   "HOXA5 MUTATED" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE"   "HOXA5 MUTATED" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE"   "HOXA5 MUTATED" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
  "HOXA5 MUTATED" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"HOXA5 WILD-TYPE"   "HOXA5 MUTATED" "HOXA5 WILD-TYPE"   "HOXA5 MUTATED" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"HOXA5 WILD-TYPE"   "HOXA5 MUTATED" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE"   "HOXA5 MUTATED" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE"   "HOXA5 MUTATED" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
  "HOXA5 MUTATED" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"HOXA5 WILD-TYPE"   "HOXA5 MUTATED" "HOXA5 WILD-TYPE"   "HOXA5 MUTATED" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"HOXA5 WILD-TYPE"   "HOXA5 MUTATED" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
[1] "hr=" "3.9"
D116V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  HOXA5 MUTATED          3        2         0         1          0          0
  HOXA5 WILD-TYPE       34       51        11        22         33          6
                 vv
clus              STAGE IV
  HOXA5 MUTATED          0
  HOXA5 WILD-TYPE        9
D116V3, multiclass
                 vv
clus               T1  T2  T3  T4
  HOXA5 MUTATED     3   2   1   0
  HOXA5 WILD-TYPE  38 107  13   8
D116V4, multiclass
    clus
vv   HOXA5 MUTATED HOXA5 WILD-TYPE
  T1             3              38
  T2             2             107
  T3             1              13
  T4             0               8
                 vv
clus              N0 N1 N2+N3
  HOXA5 MUTATED    5  1     0
  HOXA5 WILD-TYPE 90 36    35
D116V5, multiclass
       clus
vv      HOXA5 MUTATED HOXA5 WILD-TYPE
  N0                5              90
  N1                1              36
  N2+N3             0              35
                 vv
clus               M0  M1  MX
  HOXA5 MUTATED     5   0   1
  HOXA5 WILD-TYPE 138   9  17
D116V6, multiclass
    clus
vv   HOXA5 MUTATED HOXA5 WILD-TYPE
  M0             5             138
  M1             0               9
  MX             1              17
D116V7, binary
                 cls
clus               0  1
  HOXA5 MUTATED    1  5
  HOXA5 WILD-TYPE 92 74
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HOXA5 MUTATED      1    5
  HOXA5 WILD-TYPE   92   74
        clus
vv       HOXA5 MUTATED HOXA5 WILD-TYPE
  FEMALE             1              92
  MALE               5              74
D116V8, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  HOXA5 MUTATED                            0                                 0
  HOXA5 WILD-TYPE                          2                                39
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  HOXA5 MUTATED                                                    6
  HOXA5 WILD-TYPE                                                109
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  HOXA5 MUTATED                                            0
  HOXA5 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  HOXA5 MUTATED                                               0
  HOXA5 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  HOXA5 MUTATED                                0
  HOXA5 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  HOXA5 MUTATED                                    0
  HOXA5 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  HOXA5 MUTATED                              0                             0
  HOXA5 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  HOXA5 MUTATED                                               0
  HOXA5 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  HOXA5 MUTATED                              0
  HOXA5 WILD-TYPE                            2
D116V9, multiclass
D116V10, binary
                 cls
clus                0   1
  HOXA5 MUTATED     0   6
  HOXA5 WILD-TYPE  14 152
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HOXA5 MUTATED      0    6
  HOXA5 WILD-TYPE   14  152
     clus
vv    HOXA5 MUTATED HOXA5 WILD-TYPE
  NO              0              14
  YES             6             152
D116V11, continuous
D116V12, continuous
                 vv
clus               R0  R1  R2  RX
  HOXA5 MUTATED     5   0   0   1
  HOXA5 WILD-TYPE 110   6   4   8
D116V13, multiclass
    clus
vv   HOXA5 MUTATED HOXA5 WILD-TYPE
  R0             5             110
  R1             0               6
  R2             0               4
  RX             1               8

Clustering(117) Variable = FERD3L MUTATION ANALYSIS
D117V1, survival
                  sevent
clus2               0  1
  FERD3L MUTATED    5  2
  FERD3L WILD-TYPE 94 54
  FERD3L MUTATED FERD3L WILD-TYPE 
               7              148 
  FERD3L MUTATED FERD3L WILD-TYPE 
               2               54 
$`FERD3L MUTATED`
TCGA-05-4424 TCGA-38-4626 TCGA-44-5645 TCGA-50-5045 TCGA-50-5933 TCGA-64-1676 
       30.02       120.79        12.59        71.47        77.88        56.81 
TCGA-64-5781 
       51.25 

$`FERD3L WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4425 
        2.96        14.93         8.98        29.95        12.00        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 
       15.02         4.96        28.96        22.03         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 
        0.46         7.36         5.95         8.68        97.74        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61        14.73 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       21.93        46.98        13.15        44.94        24.36        42.08 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       42.77         3.19         8.09        37.15        38.24        23.51 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        6.21        23.74        13.71        13.38        10.78         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
       27.78        11.90         5.42        12.16        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
        5.16        55.89        15.02        12.13        29.26        17.13 
TCGA-50-5044 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       20.48        70.55        14.96        25.81        31.04        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 
        8.05         9.27         8.78        35.87        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12        18.64        29.00        25.12        22.55        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
       32.61         0.79        20.65        39.09        37.02        87.98 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
        2.04        42.90        28.41        28.44         0.99        20.02 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
       18.84        14.04        12.66         5.69         4.60        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        26.27        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 
        4.27         1.32         5.39         1.25        12.36        10.62 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33        10.16         2.60        13.71 

  FERD3L MUTATED FERD3L WILD-TYPE 
           12.59             0.07 
  FERD3L MUTATED FERD3L WILD-TYPE 
          120.79            97.74 
  FERD3L MUTATED FERD3L WILD-TYPE 
          56.810           20.035 
[1] "12.6 - 120.8 (56.8)" "0.1 - 97.7 (20.0)"  
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"FERD3L WILD-TYPE"   "FERD3L MUTATED" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
  "FERD3L MUTATED" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
  "FERD3L MUTATED" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" "FERD3L WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"FERD3L WILD-TYPE"   "FERD3L MUTATED" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"FERD3L WILD-TYPE"   "FERD3L MUTATED" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"FERD3L WILD-TYPE"   "FERD3L MUTATED" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
  "FERD3L MUTATED" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
  "FERD3L MUTATED" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" "FERD3L WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"FERD3L WILD-TYPE"   "FERD3L MUTATED" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"FERD3L WILD-TYPE"   "FERD3L MUTATED" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"FERD3L WILD-TYPE"   "FERD3L MUTATED" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
  "FERD3L MUTATED" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
  "FERD3L MUTATED" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE"   "FERD3L MUTATED" "FERD3L WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"FERD3L WILD-TYPE"   "FERD3L MUTATED" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"FERD3L WILD-TYPE"   "FERD3L MUTATED" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
[1] "hr=" "4.2"
D117V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  FERD3L MUTATED          3        1         1         1          0          1
  FERD3L WILD-TYPE       34       52        10        22         33          5
                  vv
clus               STAGE IV
  FERD3L MUTATED          0
  FERD3L WILD-TYPE        9
D117V3, multiclass
                  vv
clus                T1  T2  T3  T4
  FERD3L MUTATED     2   3   1   1
  FERD3L WILD-TYPE  39 106  13   7
D117V4, multiclass
    clus
vv   FERD3L MUTATED FERD3L WILD-TYPE
  T1              2               39
  T2              3              106
  T3              1               13
  T4              1                7
                  vv
clus               N0 N1 N2+N3
  FERD3L MUTATED    4  1     1
  FERD3L WILD-TYPE 91 36    34
D117V5, multiclass
       clus
vv      FERD3L MUTATED FERD3L WILD-TYPE
  N0                 4               91
  N1                 1               36
  N2+N3              1               34
                  vv
clus                M0  M1  MX
  FERD3L MUTATED     6   0   0
  FERD3L WILD-TYPE 137   9  18
D117V6, multiclass
    clus
vv   FERD3L MUTATED FERD3L WILD-TYPE
  M0              6              137
  M1              0                9
  MX              0               18
D117V7, binary
                  cls
clus                0  1
  FERD3L MUTATED    4  3
  FERD3L WILD-TYPE 89 76
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FERD3L MUTATED      4    3
  FERD3L WILD-TYPE   89   76
        clus
vv       FERD3L MUTATED FERD3L WILD-TYPE
  FEMALE              4               89
  MALE                3               76
D117V8, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  FERD3L MUTATED                            0                                 2
  FERD3L WILD-TYPE                          2                                37
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  FERD3L MUTATED                                                    5
  FERD3L WILD-TYPE                                                110
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  FERD3L MUTATED                                            0
  FERD3L WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  FERD3L MUTATED                                               0
  FERD3L WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  FERD3L MUTATED                                0
  FERD3L WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  FERD3L MUTATED                                    0
  FERD3L WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  FERD3L MUTATED                              0                             0
  FERD3L WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  FERD3L MUTATED                                               0
  FERD3L WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  FERD3L MUTATED                              0
  FERD3L WILD-TYPE                            2
D117V9, multiclass
D117V10, binary
                  cls
clus                 0   1
  FERD3L MUTATED     2   5
  FERD3L WILD-TYPE  12 153
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FERD3L MUTATED      2    5
  FERD3L WILD-TYPE   12  153
     clus
vv    FERD3L MUTATED FERD3L WILD-TYPE
  NO               2               12
  YES              5              153
D117V11, continuous
D117V12, continuous
                  vv
clus                R0  R1  R2  RX
  FERD3L MUTATED     3   1   0   0
  FERD3L WILD-TYPE 112   5   4   9
D117V13, multiclass
    clus
vv   FERD3L MUTATED FERD3L WILD-TYPE
  R0              3              112
  R1              1                5
  R2              0                4
  RX              0                9

Clustering(118) Variable = PLA2G4E MUTATION ANALYSIS
D118V1, survival
                   sevent
clus2                0  1
  PLA2G4E MUTATED    2  2
  PLA2G4E WILD-TYPE 97 54
  PLA2G4E MUTATED PLA2G4E WILD-TYPE 
                4               151 
  PLA2G4E MUTATED PLA2G4E WILD-TYPE 
                2                54 
$`PLA2G4E MUTATED`
TCGA-05-5420 TCGA-44-2659 TCGA-49-4501 TCGA-50-6594 
       15.02        44.94        46.72        12.16 

$`PLA2G4E WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       21.99        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 
       15.02         4.96        28.96        22.03         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        97.74       120.79 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 
       14.73        21.93        46.98        13.15        24.36        42.08 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       42.77         3.19         8.09        37.15        38.24        23.51 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21        23.74        13.71        12.59        13.38        10.78 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93        27.78        11.90         5.42        12.16        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       12.66        35.54        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
        5.16        55.89        15.02        12.13        29.26        17.13 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        70.55        14.96        25.81        31.04 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12        18.64        29.00        25.12 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 
       22.55        42.31         3.88        25.51        11.05         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        87.98         2.04        42.90        28.41        51.25 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       28.44         0.99        20.02        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        5.69         4.60        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        26.27        15.35         4.27         1.32         5.39 
TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.25        12.36        10.62        41.33        10.16         2.60 
TCGA-91-6836 
       13.71 

  PLA2G4E MUTATED PLA2G4E WILD-TYPE 
            12.16              0.07 
  PLA2G4E MUTATED PLA2G4E WILD-TYPE 
            46.72            120.79 
  PLA2G4E MUTATED PLA2G4E WILD-TYPE 
            29.98             20.65 
[1] "12.2 - 46.7 (30.0)" "0.1 - 120.8 (20.6)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"PLA2G4E WILD-TYPE"   "PLA2G4E MUTATED" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE"   "PLA2G4E MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
  "PLA2G4E MUTATED" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE"   "PLA2G4E MUTATED" "PLA2G4E WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"PLA2G4E WILD-TYPE"   "PLA2G4E MUTATED" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE"   "PLA2G4E MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
  "PLA2G4E MUTATED" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE"   "PLA2G4E MUTATED" "PLA2G4E WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"PLA2G4E WILD-TYPE"   "PLA2G4E MUTATED" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE"   "PLA2G4E MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
  "PLA2G4E MUTATED" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE"   "PLA2G4E MUTATED" "PLA2G4E WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
[1] "hr=" "1.1"
D118V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  PLA2G4E MUTATED          0        1         0         1          2          0
  PLA2G4E WILD-TYPE       37       52        11        22         31          6
                   vv
clus                STAGE IV
  PLA2G4E MUTATED          0
  PLA2G4E WILD-TYPE        9
D118V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  PLA2G4E MUTATED     1   2   1   0
  PLA2G4E WILD-TYPE  40 107  13   8
D118V4, multiclass
    clus
vv   PLA2G4E MUTATED PLA2G4E WILD-TYPE
  T1               1                40
  T2               2               107
  T3               1                13
  T4               0                 8
                   vv
clus                N0 N1 N2+N3
  PLA2G4E MUTATED    1  1     2
  PLA2G4E WILD-TYPE 94 36    33
D118V5, multiclass
       clus
vv      PLA2G4E MUTATED PLA2G4E WILD-TYPE
  N0                  1                94
  N1                  1                36
  N2+N3               2                33
                   vv
clus                 M0  M1  MX
  PLA2G4E MUTATED     4   0   0
  PLA2G4E WILD-TYPE 139   9  18
D118V6, multiclass
    clus
vv   PLA2G4E MUTATED PLA2G4E WILD-TYPE
  M0               4               139
  M1               0                 9
  MX               0                18
D118V7, binary
                   cls
clus                 0  1
  PLA2G4E MUTATED    3  1
  PLA2G4E WILD-TYPE 90 78
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PLA2G4E MUTATED      3    1
  PLA2G4E WILD-TYPE   90   78
        clus
vv       PLA2G4E MUTATED PLA2G4E WILD-TYPE
  FEMALE               3                90
  MALE                 1                78
D118V8, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  PLA2G4E MUTATED                            0
  PLA2G4E WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  PLA2G4E MUTATED                                   0
  PLA2G4E WILD-TYPE                                39
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  PLA2G4E MUTATED                                                    4
  PLA2G4E WILD-TYPE                                                111
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  PLA2G4E MUTATED                                            0
  PLA2G4E WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  PLA2G4E MUTATED                                               0
  PLA2G4E WILD-TYPE                                             2
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  PLA2G4E MUTATED                                0
  PLA2G4E WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  PLA2G4E MUTATED                                    0
  PLA2G4E WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  PLA2G4E MUTATED                              0                             0
  PLA2G4E WILD-TYPE                            2                             4
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  PLA2G4E MUTATED                                               0
  PLA2G4E WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  PLA2G4E MUTATED                              0
  PLA2G4E WILD-TYPE                            2
D118V9, multiclass
D118V10, binary
                   cls
clus                  0   1
  PLA2G4E MUTATED     0   4
  PLA2G4E WILD-TYPE  14 154
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PLA2G4E MUTATED      0    4
  PLA2G4E WILD-TYPE   14  154
     clus
vv    PLA2G4E MUTATED PLA2G4E WILD-TYPE
  NO                0                14
  YES               4               154
D118V11, continuous
[1] "Remove cluster labels:" "PLA2G4E MUTATED"       
clus
  PLA2G4E MUTATED PLA2G4E WILD-TYPE 
                2               110 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-05-4382 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-4384        TCGA-05-4389        TCGA-05-4390        TCGA-05-4396 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-4397        TCGA-05-4398        TCGA-05-4405        TCGA-05-4410 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5423        TCGA-05-5425        TCGA-05-5428 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4629        TCGA-38-4631        TCGA-38-4632 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2662 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-3918        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6148 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4486        TCGA-49-4487 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4505        TCGA-49-4506 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4514        TCGA-49-6742 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-49-6767 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5072        TCGA-50-5931        TCGA-50-5939 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-6590        TCGA-55-1596 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-55-6543        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-73-4658 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-75-5122 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-75-5125        TCGA-75-5126        TCGA-75-6203        TCGA-75-6206 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-75-6207        TCGA-75-6211        TCGA-80-5611        TCGA-91-6829 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
D118V12, continuous
[1] "Remove cluster labels:" "PLA2G4E MUTATED"       
clus
  PLA2G4E MUTATED PLA2G4E WILD-TYPE 
                2                66 
       TCGA-05-4384        TCGA-05-4390        TCGA-05-4396        TCGA-05-4405 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-4410        TCGA-05-4415        TCGA-05-4417        TCGA-05-4424 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4433        TCGA-05-5423        TCGA-05-5425 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-5428        TCGA-35-4122        TCGA-35-4123        TCGA-35-5375 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-38-4625        TCGA-38-4626        TCGA-44-2655        TCGA-44-2656 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2662        TCGA-44-2666        TCGA-44-2668 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-4112 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6147 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4505        TCGA-55-1592        TCGA-55-1594 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6642 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-64-5781        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6836 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
                   vv
clus                 R0  R1  R2  RX
  PLA2G4E MUTATED     3   0   0   0
  PLA2G4E WILD-TYPE 112   6   4   9
D118V13, multiclass
    clus
vv   PLA2G4E MUTATED PLA2G4E WILD-TYPE
  R0               3               112
  R1               0                 6
  R2               0                 4
  RX               0                 9

Clustering(119) Variable = RP1L1 MUTATION ANALYSIS
D119V1, survival
                 sevent
clus2              0  1
  RP1L1 MUTATED   20 11
  RP1L1 WILD-TYPE 79 45
  RP1L1 MUTATED RP1L1 WILD-TYPE 
             31             124 
  RP1L1 MUTATED RP1L1 WILD-TYPE 
             11              45 
$`RP1L1 MUTATED`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4396 TCGA-05-4398 TCGA-05-4415 
       50.07         3.98        19.92         9.96        47.05         2.96 
TCGA-05-4424 TCGA-05-4427 TCGA-05-4430 TCGA-38-4625 TCGA-38-4631 TCGA-38-4632 
       30.02        26.01        25.02        97.74        11.64        44.61 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4487 TCGA-49-4514 TCGA-49-6744 TCGA-50-5045 
       36.49        16.41        28.11        55.89        29.26        71.47 
TCGA-50-5049 TCGA-50-5933 TCGA-50-5936 TCGA-50-5941 TCGA-50-6590 TCGA-55-5899 
       70.55        77.88         8.45        18.64        42.31         2.86 
TCGA-55-6712 TCGA-64-5779 TCGA-64-5781 TCGA-67-3773 TCGA-73-4666 TCGA-73-4668 
        0.79        28.41        51.25        14.04        26.27        15.35 
TCGA-91-6828 
       10.62 

$`RP1L1 WILD-TYPE`
TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4397 TCGA-05-4402 TCGA-05-4403 
       14.01        45.01        37.02        24.03         8.02        19.00 
TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4425 
       20.05        14.93         8.98        29.95        12.00        21.99 
TCGA-05-4426 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       26.01        25.02        24.00        15.02        15.02         4.96 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
       28.96        22.03         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        5.95         8.68       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       35.28        14.73        21.93        46.98        13.15        44.94 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
       24.36        42.08        42.77         3.19         8.09        37.15 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
       38.24        23.51         6.21        23.74        13.71        12.59 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
       13.38        10.78         9.93        27.78        11.90         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-49-4486 TCGA-49-4488 TCGA-49-4490 
       12.16        63.72        32.45        76.21        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 TCGA-49-6745 TCGA-50-5044 TCGA-50-5051 
        5.16        15.02        12.13        17.13        20.48        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81        31.04        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5935 TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
       35.87        21.47        15.12        29.00        25.12        22.55 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 
       23.05        38.73        48.62        45.17         0.07        32.61 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        87.98         2.04 
TCGA-64-5778 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3774 
       42.90        28.44         0.99        20.02        18.84        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        5.69         4.60        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 
       29.95         4.27         1.32         5.39         1.25        12.36 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33        10.16         2.60        13.71 

  RP1L1 MUTATED RP1L1 WILD-TYPE 
           0.79            0.07 
  RP1L1 MUTATED RP1L1 WILD-TYPE 
          97.74          120.79 
  RP1L1 MUTATED RP1L1 WILD-TYPE 
         26.270          20.035 
[1] "0.8 - 97.7 (26.3)"  "0.1 - 120.8 (20.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "RP1L1 MUTATED"   "RP1L1 MUTATED"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
  "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"RP1L1 WILD-TYPE"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "RP1L1 MUTATED"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE"   "RP1L1 MUTATED" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"RP1L1 WILD-TYPE"   "RP1L1 MUTATED"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"RP1L1 WILD-TYPE"   "RP1L1 MUTATED"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
  "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"RP1L1 WILD-TYPE"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
  "RP1L1 MUTATED"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
  "RP1L1 MUTATED" "RP1L1 WILD-TYPE"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"RP1L1 WILD-TYPE"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
  "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
  "RP1L1 MUTATED"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE"   "RP1L1 MUTATED" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
  "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "RP1L1 MUTATED"   "RP1L1 MUTATED"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
  "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"RP1L1 WILD-TYPE"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "RP1L1 MUTATED"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE"   "RP1L1 MUTATED" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"RP1L1 WILD-TYPE"   "RP1L1 MUTATED"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"RP1L1 WILD-TYPE"   "RP1L1 MUTATED"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
  "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"RP1L1 WILD-TYPE"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
  "RP1L1 MUTATED"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
  "RP1L1 MUTATED" "RP1L1 WILD-TYPE"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"RP1L1 WILD-TYPE"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
  "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
  "RP1L1 MUTATED"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE"   "RP1L1 MUTATED" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
  "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "RP1L1 MUTATED"   "RP1L1 MUTATED"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
  "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"RP1L1 WILD-TYPE"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "RP1L1 MUTATED"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE"   "RP1L1 MUTATED" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"RP1L1 WILD-TYPE"   "RP1L1 MUTATED"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"RP1L1 WILD-TYPE"   "RP1L1 MUTATED"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
  "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"RP1L1 WILD-TYPE"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
  "RP1L1 MUTATED"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
  "RP1L1 MUTATED" "RP1L1 WILD-TYPE"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"RP1L1 WILD-TYPE"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
  "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
  "RP1L1 MUTATED"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE"   "RP1L1 MUTATED" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
  "RP1L1 MUTATED" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE"   "RP1L1 MUTATED" "RP1L1 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
[1] "hr=" "1.5"
D119V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  RP1L1 MUTATED          7        9         2         4          4          4
  RP1L1 WILD-TYPE       30       44         9        19         29          2
                 vv
clus              STAGE IV
  RP1L1 MUTATED          2
  RP1L1 WILD-TYPE        7
D119V3, multiclass
                 vv
clus              T1 T2 T3 T4
  RP1L1 MUTATED    6 20  2  4
  RP1L1 WILD-TYPE 35 89 12  4
D119V4, multiclass
    clus
vv   RP1L1 MUTATED RP1L1 WILD-TYPE
  T1             6              35
  T2            20              89
  T3             2              12
  T4             4               4
                 vv
clus              N0 N1 N2+N3
  RP1L1 MUTATED   16 10     6
  RP1L1 WILD-TYPE 79 27    29
D119V5, multiclass
       clus
vv      RP1L1 MUTATED RP1L1 WILD-TYPE
  N0               16              79
  N1               10              27
  N2+N3             6              29
                 vv
clus               M0  M1  MX
  RP1L1 MUTATED    26   2   4
  RP1L1 WILD-TYPE 117   7  14
D119V6, multiclass
    clus
vv   RP1L1 MUTATED RP1L1 WILD-TYPE
  M0            26             117
  M1             2               7
  MX             4              14
D119V7, binary
                 cls
clus               0  1
  RP1L1 MUTATED   17 15
  RP1L1 WILD-TYPE 76 64
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RP1L1 MUTATED     17   15
  RP1L1 WILD-TYPE   76   64
        clus
vv       RP1L1 MUTATED RP1L1 WILD-TYPE
  FEMALE            17              76
  MALE              15              64
D119V8, continuous
[1] "Remove cluster labels:" "RP1L1 MUTATED"         
clus
  RP1L1 MUTATED RP1L1 WILD-TYPE 
              2              10 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
     TCGA-73-4676      TCGA-75-5122 
"RP1L1 WILD-TYPE" "RP1L1 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  RP1L1 MUTATED                            1                                10
  RP1L1 WILD-TYPE                          1                                29
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  RP1L1 MUTATED                                                   18
  RP1L1 WILD-TYPE                                                 97
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  RP1L1 MUTATED                                            0
  RP1L1 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  RP1L1 MUTATED                                               0
  RP1L1 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  RP1L1 MUTATED                                0
  RP1L1 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  RP1L1 MUTATED                                    1
  RP1L1 WILD-TYPE                                  1
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  RP1L1 MUTATED                              0                             1
  RP1L1 WILD-TYPE                            2                             3
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  RP1L1 MUTATED                                               0
  RP1L1 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  RP1L1 MUTATED                              1
  RP1L1 WILD-TYPE                            1
D119V9, multiclass
D119V10, binary
                 cls
clus                0   1
  RP1L1 MUTATED     5  27
  RP1L1 WILD-TYPE   9 131
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RP1L1 MUTATED      5   27
  RP1L1 WILD-TYPE    9  131
     clus
vv    RP1L1 MUTATED RP1L1 WILD-TYPE
  NO              5               9
  YES            27             131
D119V11, continuous
D119V12, continuous
                 vv
clus              R0 R1 R2 RX
  RP1L1 MUTATED   20  1  1  1
  RP1L1 WILD-TYPE 95  5  3  8
D119V13, multiclass
    clus
vv   RP1L1 MUTATED RP1L1 WILD-TYPE
  R0            20              95
  R1             1               5
  R2             1               3
  RX             1               8

Clustering(120) Variable = SIRPB1 MUTATION ANALYSIS
D120V1, survival
                  sevent
clus2               0  1
  SIRPB1 MUTATED    3  3
  SIRPB1 WILD-TYPE 96 53
  SIRPB1 MUTATED SIRPB1 WILD-TYPE 
               6              149 
  SIRPB1 MUTATED SIRPB1 WILD-TYPE 
               3               53 
$`SIRPB1 MUTATED`
TCGA-05-4396 TCGA-05-4427 TCGA-49-6743 TCGA-50-6593 TCGA-73-4659 TCGA-91-6836 
        9.96        26.01        12.13        11.05        23.38        13.71 

$`SIRPB1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        4.96        28.96        22.03         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61        14.73 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       21.93        46.98        13.15        44.94        24.36        42.08 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       42.77         3.19         8.09        37.15        38.24        23.51 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21        23.74        13.71        12.59        13.38        10.78 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93        27.78        11.90         5.42        12.16        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 
       29.46         5.16        55.89        15.02        29.26        17.13 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        70.55        14.96        25.81        31.04 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12        18.64        29.00        25.12 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 
       22.55        42.31         3.88        25.51        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        87.98         2.04        42.90        28.41        51.25 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       28.44         0.99        20.02        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4662 
        5.69         4.60        13.87         2.01        52.57        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       26.27        15.35         4.27         1.32         5.39         1.25 
TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
       12.36        10.62        41.33        10.16         2.60 

  SIRPB1 MUTATED SIRPB1 WILD-TYPE 
            9.96             0.07 
  SIRPB1 MUTATED SIRPB1 WILD-TYPE 
           26.01           120.79 
  SIRPB1 MUTATED SIRPB1 WILD-TYPE 
           12.92            21.47 
[1] "10.0 - 26.0 (12.9)" "0.1 - 120.8 (21.5)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE"   "SIRPB1 MUTATED" "SIRPB1 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "SIRPB1 MUTATED" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
  "SIRPB1 MUTATED" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"SIRPB1 WILD-TYPE"   "SIRPB1 MUTATED" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"SIRPB1 WILD-TYPE"   "SIRPB1 MUTATED" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE"   "SIRPB1 MUTATED" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE"   "SIRPB1 MUTATED" "SIRPB1 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "SIRPB1 MUTATED" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
  "SIRPB1 MUTATED" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"SIRPB1 WILD-TYPE"   "SIRPB1 MUTATED" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"SIRPB1 WILD-TYPE"   "SIRPB1 MUTATED" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE"   "SIRPB1 MUTATED" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE"   "SIRPB1 MUTATED" "SIRPB1 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "SIRPB1 MUTATED" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
  "SIRPB1 MUTATED" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"SIRPB1 WILD-TYPE"   "SIRPB1 MUTATED" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"SIRPB1 WILD-TYPE"   "SIRPB1 MUTATED" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE"   "SIRPB1 MUTATED" 
[1] "hr=" "2.5"
D120V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  SIRPB1 MUTATED          0        1         0         1          3          1
  SIRPB1 WILD-TYPE       37       52        11        22         30          5
                  vv
clus               STAGE IV
  SIRPB1 MUTATED          0
  SIRPB1 WILD-TYPE        9
D120V3, multiclass
                  vv
clus                T1  T2  T3  T4
  SIRPB1 MUTATED     2   3   0   1
  SIRPB1 WILD-TYPE  39 106  14   7
D120V4, multiclass
    clus
vv   SIRPB1 MUTATED SIRPB1 WILD-TYPE
  T1              2               39
  T2              3              106
  T3              0               14
  T4              1                7
                  vv
clus               N0 N1 N2+N3
  SIRPB1 MUTATED    1  2     3
  SIRPB1 WILD-TYPE 94 35    32
D120V5, multiclass
       clus
vv      SIRPB1 MUTATED SIRPB1 WILD-TYPE
  N0                 1               94
  N1                 2               35
  N2+N3              3               32
                  vv
clus                M0  M1  MX
  SIRPB1 MUTATED     4   0   2
  SIRPB1 WILD-TYPE 139   9  16
D120V6, multiclass
    clus
vv   SIRPB1 MUTATED SIRPB1 WILD-TYPE
  M0              4              139
  M1              0                9
  MX              2               16
D120V7, binary
                  cls
clus                0  1
  SIRPB1 MUTATED    4  2
  SIRPB1 WILD-TYPE 89 77
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SIRPB1 MUTATED      4    2
  SIRPB1 WILD-TYPE   89   77
        clus
vv       SIRPB1 MUTATED SIRPB1 WILD-TYPE
  FEMALE              4               89
  MALE                2               77
D120V8, continuous
[1] "Remove cluster labels:" "SIRPB1 MUTATED"        
clus
  SIRPB1 MUTATED SIRPB1 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-64-5778       TCGA-71-6725       TCGA-73-4662       TCGA-73-4666 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" "SIRPB1 WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  SIRPB1 MUTATED                            0                                 3
  SIRPB1 WILD-TYPE                          2                                36
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SIRPB1 MUTATED                                                    2
  SIRPB1 WILD-TYPE                                                113
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  SIRPB1 MUTATED                                            0
  SIRPB1 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  SIRPB1 MUTATED                                               0
  SIRPB1 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  SIRPB1 MUTATED                                1
  SIRPB1 WILD-TYPE                              1
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  SIRPB1 MUTATED                                    0
  SIRPB1 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  SIRPB1 MUTATED                              0                             0
  SIRPB1 WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  SIRPB1 MUTATED                                               0
  SIRPB1 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  SIRPB1 MUTATED                              0
  SIRPB1 WILD-TYPE                            2
D120V9, multiclass
D120V10, binary
                  cls
clus                 0   1
  SIRPB1 MUTATED     0   6
  SIRPB1 WILD-TYPE  14 152
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SIRPB1 MUTATED      0    6
  SIRPB1 WILD-TYPE   14  152
     clus
vv    SIRPB1 MUTATED SIRPB1 WILD-TYPE
  NO               0               14
  YES              6              152
D120V11, continuous
D120V12, continuous
                  vv
clus                R0  R1  R2  RX
  SIRPB1 MUTATED     4   0   0   0
  SIRPB1 WILD-TYPE 111   6   4   9
D120V13, multiclass
    clus
vv   SIRPB1 MUTATED SIRPB1 WILD-TYPE
  R0              4              111
  R1              0                6
  R2              0                4
  RX              0                9

Clustering(121) Variable = GTF2I MUTATION ANALYSIS
D121V1, survival
                 sevent
clus2              0  1
  GTF2I MUTATED    1  1
  GTF2I WILD-TYPE 98 55
  GTF2I MUTATED GTF2I WILD-TYPE 
              2             153 
  GTF2I MUTATED GTF2I WILD-TYPE 
              1              55 
$`GTF2I MUTATED`
TCGA-05-4396 TCGA-44-2662 
        9.96        42.08 

$`GTF2I WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 
       15.02         4.96        28.96        22.03         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        97.74       120.79 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       14.73        21.93        46.98        13.15        44.94        24.36 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       42.77         3.19         8.09        37.15        38.24        23.51 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21        23.74        13.71        12.59        13.38        10.78 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93        27.78        11.90         5.42        12.16        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46         5.16        55.89        15.02        12.13        29.26 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
       17.13        20.48        71.47        70.55        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       31.04        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12        18.64        29.00 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       25.12        22.55        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        87.98         2.04        42.90 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       28.41        51.25        28.44         0.99        20.02        18.84 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
       14.04        12.66         5.69         4.60        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        26.27        15.35         4.27 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 
        1.32         5.39         1.25        12.36        10.62        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       10.16         2.60        13.71 

  GTF2I MUTATED GTF2I WILD-TYPE 
           9.96            0.07 
  GTF2I MUTATED GTF2I WILD-TYPE 
          42.08          120.79 
  GTF2I MUTATED GTF2I WILD-TYPE 
          26.02           20.65 
[1] "10.0 - 42.1 (26.0)" "0.1 - 120.8 (20.6)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE"   "GTF2I MUTATED" "GTF2I WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"GTF2I WILD-TYPE"   "GTF2I MUTATED" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE"   "GTF2I MUTATED" "GTF2I WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"GTF2I WILD-TYPE"   "GTF2I MUTATED" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE"   "GTF2I MUTATED" "GTF2I WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"GTF2I WILD-TYPE"   "GTF2I MUTATED" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
[1] "Remove cluster labels:" "GTF2I MUTATED"         
clus
  GTF2I MUTATED GTF2I WILD-TYPE 
              2             153 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4397      TCGA-05-4398 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4402      TCGA-05-4403      TCGA-05-4405      TCGA-05-4415 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4417      TCGA-05-4418      TCGA-05-4420      TCGA-05-4422 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4424      TCGA-05-4425      TCGA-05-4426      TCGA-05-4427 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4430      TCGA-05-4432      TCGA-05-4433      TCGA-05-4434 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-5420      TCGA-05-5423      TCGA-05-5425      TCGA-05-5428 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4628      TCGA-38-4629      TCGA-38-4630 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-38-4631      TCGA-38-4632      TCGA-38-6178      TCGA-44-2655 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2666      TCGA-44-2668      TCGA-44-3396 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-3398      TCGA-44-3918      TCGA-44-3919      TCGA-44-4112 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-5643      TCGA-44-5645      TCGA-44-6144      TCGA-44-6145 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6146      TCGA-44-6147      TCGA-44-6148      TCGA-44-6774 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6775      TCGA-44-6776      TCGA-44-6777      TCGA-44-6778 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6779      TCGA-49-4486      TCGA-49-4487      TCGA-49-4488 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4490      TCGA-49-4494      TCGA-49-4501      TCGA-49-4505 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4506      TCGA-49-4507      TCGA-49-4510      TCGA-49-4512 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4514      TCGA-49-6742      TCGA-49-6743      TCGA-49-6744 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-6745      TCGA-50-5044      TCGA-50-5045      TCGA-50-5049 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5051      TCGA-50-5055      TCGA-50-5066      TCGA-50-5068 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5072      TCGA-50-5930      TCGA-50-5931      TCGA-50-5932 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5933      TCGA-50-5935      TCGA-50-5936      TCGA-50-5939 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5941      TCGA-50-5942      TCGA-50-5944      TCGA-50-5946 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-6590      TCGA-50-6591      TCGA-50-6592      TCGA-50-6593 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-6594      TCGA-50-6595      TCGA-50-6597      TCGA-55-1592 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1595      TCGA-55-1596      TCGA-55-5899 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-55-6543      TCGA-55-6642      TCGA-55-6712      TCGA-64-1676 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-1677      TCGA-64-1678      TCGA-64-1680      TCGA-64-5774 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-5775      TCGA-64-5778      TCGA-64-5779      TCGA-64-5781 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-5815      TCGA-67-3770      TCGA-67-3771      TCGA-67-3772 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-67-3773      TCGA-67-3774      TCGA-67-6215      TCGA-67-6216 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-67-6217      TCGA-71-6725      TCGA-73-4658      TCGA-73-4659 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-73-4662      TCGA-73-4666      TCGA-73-4668      TCGA-73-4670 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-73-4675      TCGA-73-4676      TCGA-73-4677      TCGA-86-6562 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-91-6836 
"GTF2I WILD-TYPE" 
D121V2, continuous
[1] "Remove cluster labels:" "GTF2I MUTATED"         
clus
  GTF2I MUTATED GTF2I WILD-TYPE 
              2             153 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-05-4382 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4384      TCGA-05-4389      TCGA-05-4390      TCGA-05-4395 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4397      TCGA-05-4398      TCGA-05-4402      TCGA-05-4403 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4405      TCGA-05-4410      TCGA-05-4415      TCGA-05-4417 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4422      TCGA-05-4424 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4425      TCGA-05-4426      TCGA-05-4427      TCGA-05-4430 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4432      TCGA-05-4433      TCGA-05-4434      TCGA-05-5420 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-5423      TCGA-05-5425      TCGA-05-5428      TCGA-05-5429 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-5715      TCGA-35-3615      TCGA-35-4122      TCGA-35-4123 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-35-5375      TCGA-38-4625      TCGA-38-4626      TCGA-38-4627 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-38-4628      TCGA-38-4629      TCGA-38-4630      TCGA-38-4631 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-38-4632      TCGA-38-6178      TCGA-44-2655      TCGA-44-2656 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2665 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3396      TCGA-44-3398 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-3918      TCGA-44-3919      TCGA-44-4112      TCGA-44-5643 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-5645      TCGA-44-6144      TCGA-44-6145      TCGA-44-6146 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6147      TCGA-44-6148      TCGA-44-6774      TCGA-44-6775 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6776      TCGA-44-6777      TCGA-44-6778      TCGA-44-6779 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4486      TCGA-49-4487      TCGA-49-4488      TCGA-49-4490 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4494      TCGA-49-4501      TCGA-49-4505      TCGA-49-4506 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4507      TCGA-49-4510      TCGA-49-4512      TCGA-49-4514 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-6742      TCGA-49-6743      TCGA-49-6744      TCGA-49-6745 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-6767      TCGA-50-5044      TCGA-50-5045      TCGA-50-5049 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5051      TCGA-50-5055      TCGA-50-5066      TCGA-50-5068 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5072      TCGA-50-5930      TCGA-50-5931      TCGA-50-5932 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5933      TCGA-50-5935      TCGA-50-5936      TCGA-50-5939 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5941      TCGA-50-5942      TCGA-50-5944      TCGA-50-5946 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-6590      TCGA-50-6591      TCGA-50-6592      TCGA-50-6593 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-6594      TCGA-50-6595      TCGA-50-6597      TCGA-55-1594 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-55-1596      TCGA-55-6642      TCGA-64-1676      TCGA-64-1677 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-64-5774      TCGA-64-5775 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-5778      TCGA-64-5779      TCGA-64-5781      TCGA-64-5815 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-67-3770      TCGA-67-3771      TCGA-67-3772      TCGA-67-3773 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-67-3774      TCGA-67-4679      TCGA-67-6215      TCGA-67-6216 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-67-6217      TCGA-71-6725      TCGA-73-4658      TCGA-73-4659 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-73-4662      TCGA-73-4666      TCGA-73-4668      TCGA-73-4670 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-73-4675      TCGA-73-4676      TCGA-73-4677      TCGA-86-6562 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-91-6836 
"GTF2I WILD-TYPE" 
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  GTF2I MUTATED          0        1         1         0          0          1
  GTF2I WILD-TYPE       37       52        10        23         33          5
                 vv
clus              STAGE IV
  GTF2I MUTATED          0
  GTF2I WILD-TYPE        9
D121V3, multiclass
                 vv
clus               T1  T2  T3  T4
  GTF2I MUTATED     0   2   0   1
  GTF2I WILD-TYPE  41 107  14   7
D121V4, multiclass
    clus
vv   GTF2I MUTATED GTF2I WILD-TYPE
  T1             0              41
  T2             2             107
  T3             0              14
  T4             1               7
                 vv
clus              N0 N1 N2+N3
  GTF2I MUTATED    1  2     0
  GTF2I WILD-TYPE 94 35    35
D121V5, multiclass
       clus
vv      GTF2I MUTATED GTF2I WILD-TYPE
  N0                1              94
  N1                2              35
  N2+N3             0              35
                 vv
clus               M0  M1  MX
  GTF2I MUTATED     3   0   0
  GTF2I WILD-TYPE 140   9  18
D121V6, multiclass
    clus
vv   GTF2I MUTATED GTF2I WILD-TYPE
  M0             3             140
  M1             0               9
  MX             0              18
D121V7, binary
                 cls
clus               0  1
  GTF2I MUTATED    1  2
  GTF2I WILD-TYPE 92 77
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GTF2I MUTATED      1    2
  GTF2I WILD-TYPE   92   77
        clus
vv       GTF2I MUTATED GTF2I WILD-TYPE
  FEMALE             1              92
  MALE               2              77
D121V8, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  GTF2I MUTATED                            0                                 1
  GTF2I WILD-TYPE                          2                                38
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  GTF2I MUTATED                                                    1
  GTF2I WILD-TYPE                                                114
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  GTF2I MUTATED                                            0
  GTF2I WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  GTF2I MUTATED                                               0
  GTF2I WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  GTF2I MUTATED                                0
  GTF2I WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  GTF2I MUTATED                                    1
  GTF2I WILD-TYPE                                  1
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  GTF2I MUTATED                              0                             0
  GTF2I WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  GTF2I MUTATED                                               0
  GTF2I WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  GTF2I MUTATED                              0
  GTF2I WILD-TYPE                            2
D121V9, multiclass
D121V10, binary
                 cls
clus                0   1
  GTF2I MUTATED     0   3
  GTF2I WILD-TYPE  14 155
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GTF2I MUTATED      0    3
  GTF2I WILD-TYPE   14  155
     clus
vv    GTF2I MUTATED GTF2I WILD-TYPE
  NO              0              14
  YES             3             155
D121V11, continuous
[1] "Remove cluster labels:" "GTF2I MUTATED"         
clus
  GTF2I MUTATED GTF2I WILD-TYPE 
              2             110 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-05-4382 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4384      TCGA-05-4389      TCGA-05-4390      TCGA-05-4397 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4405      TCGA-05-4410      TCGA-05-4415 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4417      TCGA-05-4418      TCGA-05-4420      TCGA-05-4422 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4424      TCGA-05-4425      TCGA-05-4426      TCGA-05-4427 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4430      TCGA-05-4432      TCGA-05-4433      TCGA-05-4434 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-5420      TCGA-05-5423      TCGA-05-5425      TCGA-05-5428 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4629      TCGA-38-4631      TCGA-38-4632 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3396      TCGA-44-3398 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-3918      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6148 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4490      TCGA-49-4494      TCGA-49-4505      TCGA-49-4506 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4507      TCGA-49-4510      TCGA-49-4514      TCGA-49-6742 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-49-6767 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5051      TCGA-50-5072      TCGA-50-5931      TCGA-50-5939 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5941      TCGA-50-5942      TCGA-50-6590      TCGA-55-1596 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-55-6543      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-73-4658 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-75-5122 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-75-5125      TCGA-75-5126      TCGA-75-6203      TCGA-75-6206 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-75-6207      TCGA-75-6211      TCGA-80-5611      TCGA-91-6829 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-91-6835      TCGA-91-6836 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
D121V12, continuous
[1] "Remove cluster labels:" "GTF2I MUTATED"         
clus
  GTF2I MUTATED GTF2I WILD-TYPE 
              2              66 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4405      TCGA-05-4410 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4424      TCGA-05-4427 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4433      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-5428      TCGA-35-4122      TCGA-35-4123      TCGA-35-5375 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-38-4625      TCGA-38-4626      TCGA-44-2655      TCGA-44-2656 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2666      TCGA-44-2668 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-4112 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-5645      TCGA-44-6144      TCGA-44-6145      TCGA-44-6147 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4494      TCGA-49-4505      TCGA-55-1592      TCGA-55-1594 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-55-5899      TCGA-55-6642 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-5781      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-91-6829      TCGA-91-6836 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
                 vv
clus               R0  R1  R2  RX
  GTF2I MUTATED     3   0   0   0
  GTF2I WILD-TYPE 112   6   4   9
D121V13, multiclass
    clus
vv   GTF2I MUTATED GTF2I WILD-TYPE
  R0             3             112
  R1             0               6
  R2             0               4
  RX             0               9

Clustering(122) Variable = COL3A1 MUTATION ANALYSIS
D122V1, survival
                  sevent
clus2               0  1
  COL3A1 MUTATED   14  6
  COL3A1 WILD-TYPE 85 50
  COL3A1 MUTATED COL3A1 WILD-TYPE 
              20              135 
  COL3A1 MUTATED COL3A1 WILD-TYPE 
               6               50 
$`COL3A1 MUTATED`
TCGA-05-4397 TCGA-05-4398 TCGA-05-4427 TCGA-38-4631 TCGA-44-2656 TCGA-44-2659 
       24.03        47.05        26.01        11.64        46.98        44.94 
TCGA-44-4112 TCGA-44-6774 TCGA-49-4506 TCGA-49-4514 TCGA-49-6744 TCGA-50-5049 
       23.74         5.42        32.84        55.89        29.26        70.55 
TCGA-50-5941 TCGA-50-6593 TCGA-64-1676 TCGA-64-5781 TCGA-67-3771 TCGA-67-3773 
       18.64        11.05        56.81        51.25        20.02        14.04 
TCGA-73-4658 TCGA-73-4662 
       52.57        29.95 

$`COL3A1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
        9.96         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02        15.02         4.96 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
       28.96        22.03         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        97.74       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 
       28.37        35.28        44.61        14.73        21.93        13.15 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
       24.36        42.08        42.77         3.19         8.09        37.15 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
       38.24        23.51         6.21        13.71        12.59        13.38 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 
       10.78         9.93        27.78        11.90        12.16        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4507 TCGA-49-4510 
       12.66        35.54        46.72        14.07         8.81        29.46 
TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
        5.16        15.02        12.13        17.13        20.48        71.47 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81        31.04        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
       29.00        25.12        22.55        42.31         3.88        25.51 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 
       45.17         2.86         0.07        32.61         0.79        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        87.98         2.04        42.90        28.41 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       28.44         0.99        18.84        12.66         5.69         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4659 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       13.87         2.01        23.38        26.27        15.35         4.27 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 
        1.32         5.39         1.25        12.36        10.62        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       10.16         2.60        13.71 

  COL3A1 MUTATED COL3A1 WILD-TYPE 
            5.42             0.07 
  COL3A1 MUTATED COL3A1 WILD-TYPE 
           70.55           120.79 
  COL3A1 MUTATED COL3A1 WILD-TYPE 
          29.605           19.000 
[1] "5.4 - 70.5 (29.6)"  "0.1 - 120.8 (19.0)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE"   "COL3A1 MUTATED" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
  "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE"   "COL3A1 MUTATED" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
  "COL3A1 MUTATED" "COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
  "COL3A1 MUTATED" "COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE"   "COL3A1 MUTATED" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
  "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE"   "COL3A1 MUTATED" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
  "COL3A1 MUTATED" "COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
  "COL3A1 MUTATED" "COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE"   "COL3A1 MUTATED" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
  "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE"   "COL3A1 MUTATED" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
  "COL3A1 MUTATED" "COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
  "COL3A1 MUTATED" "COL3A1 WILD-TYPE"   "COL3A1 MUTATED" "COL3A1 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
[1] "hr=" "1.9"
D122V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  COL3A1 MUTATED          5        7         1         5          3          1
  COL3A1 WILD-TYPE       32       46        10        18         30          5
                  vv
clus               STAGE IV
  COL3A1 MUTATED          0
  COL3A1 WILD-TYPE        9
D122V3, multiclass
                  vv
clus               T1 T2 T3 T4
  COL3A1 MUTATED    7 13  1  1
  COL3A1 WILD-TYPE 34 96 13  7
D122V4, multiclass
    clus
vv   COL3A1 MUTATED COL3A1 WILD-TYPE
  T1              7               34
  T2             13               96
  T3              1               13
  T4              1                7
                  vv
clus               N0 N1 N2+N3
  COL3A1 MUTATED   13  5     4
  COL3A1 WILD-TYPE 82 32    31
D122V5, multiclass
       clus
vv      COL3A1 MUTATED COL3A1 WILD-TYPE
  N0                13               82
  N1                 5               32
  N2+N3              4               31
                  vv
clus                M0  M1  MX
  COL3A1 MUTATED    20   0   2
  COL3A1 WILD-TYPE 123   9  16
D122V6, multiclass
    clus
vv   COL3A1 MUTATED COL3A1 WILD-TYPE
  M0             20              123
  M1              0                9
  MX              2               16
D122V7, binary
                  cls
clus                0  1
  COL3A1 MUTATED   18  4
  COL3A1 WILD-TYPE 75 75
[1] "tbl2"
                  cls
clus               [,1] [,2]
  COL3A1 MUTATED     18    4
  COL3A1 WILD-TYPE   75   75
        clus
vv       COL3A1 MUTATED COL3A1 WILD-TYPE
  FEMALE             18               75
  MALE                4               75
D122V8, continuous
[1] "Remove cluster labels:" "COL3A1 MUTATED"        
clus
  COL3A1 MUTATED COL3A1 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-64-5778       TCGA-71-6725       TCGA-73-4659       TCGA-73-4666 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" "COL3A1 WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  COL3A1 MUTATED                            0                                 6
  COL3A1 WILD-TYPE                          2                                33
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  COL3A1 MUTATED                                                   15
  COL3A1 WILD-TYPE                                                100
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  COL3A1 MUTATED                                            0
  COL3A1 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  COL3A1 MUTATED                                               0
  COL3A1 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  COL3A1 MUTATED                                0
  COL3A1 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  COL3A1 MUTATED                                    0
  COL3A1 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  COL3A1 MUTATED                              0                             1
  COL3A1 WILD-TYPE                            2                             3
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  COL3A1 MUTATED                                               0
  COL3A1 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  COL3A1 MUTATED                              0
  COL3A1 WILD-TYPE                            2
D122V9, multiclass
D122V10, binary
                  cls
clus                 0   1
  COL3A1 MUTATED     1  21
  COL3A1 WILD-TYPE  13 137
[1] "tbl2"
                  cls
clus               [,1] [,2]
  COL3A1 MUTATED      1   21
  COL3A1 WILD-TYPE   13  137
     clus
vv    COL3A1 MUTATED COL3A1 WILD-TYPE
  NO               1               13
  YES             21              137
D122V11, continuous
D122V12, continuous
                  vv
clus               R0 R1 R2 RX
  COL3A1 MUTATED   17  1  0  0
  COL3A1 WILD-TYPE 98  5  4  9
D122V13, multiclass
    clus
vv   COL3A1 MUTATED COL3A1 WILD-TYPE
  R0             17               98
  R1              1                5
  R2              0                4
  RX              0                9

Clustering(123) Variable = MUC16 MUTATION ANALYSIS
D123V1, survival
                 sevent
clus2              0  1
  MUC16 MUTATED   47 25
  MUC16 WILD-TYPE 52 31
  MUC16 MUTATED MUC16 WILD-TYPE 
             72              83 
  MUC16 MUTATED MUC16 WILD-TYPE 
             25              31 
$`MUC16 MUTATED`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
       50.07         3.98        19.92         9.96        24.03        47.05 
TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        19.00        20.05        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4427 TCGA-05-4430 TCGA-05-5428 TCGA-35-4123 TCGA-38-4625 
       30.02        26.01        25.02        22.03         5.95        97.74 
TCGA-38-4626 TCGA-38-4631 TCGA-44-2655 TCGA-44-2656 TCGA-44-2659 TCGA-44-2662 
      120.79        11.64        21.93        46.98        44.94        42.08 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3398 TCGA-44-3918 TCGA-44-4112 TCGA-44-5643 
        3.19         8.09        38.24        23.51        23.74        13.71 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
       13.38        10.78         5.42        12.16        63.72        32.45 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4494 TCGA-49-4507 TCGA-49-4514 TCGA-49-6743 
       28.11        28.57        35.54         8.81        55.89        12.13 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5931 TCGA-50-5932 TCGA-50-6590 
       17.13        20.48        71.47         8.78        35.87        42.31 
TCGA-50-6593 TCGA-50-6594 TCGA-55-1595 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
       11.05        12.16        48.62         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-67-3770 
       39.09         2.04        42.90        28.41        51.25         0.99 
TCGA-67-3771 TCGA-67-6216 TCGA-73-4658 TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 
       20.02         4.60        52.57        29.95        15.35         4.27 
TCGA-73-4675 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.32        10.62        41.33        10.16         2.60        13.71 

$`MUC16 WILD-TYPE`
TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4415 TCGA-05-4422 TCGA-05-4425 
       14.01        45.01        37.02         2.96        12.00        21.99 
TCGA-05-4426 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       26.01        25.02        24.00        15.02        15.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 
       28.96         0.99         2.04         0.46         7.36         8.68 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 
       37.71        49.02        28.37        35.28        44.61        14.73 
TCGA-44-2657 TCGA-44-2661 TCGA-44-2665 TCGA-44-3396 TCGA-44-3919 TCGA-44-5645 
       13.15        24.36        42.77        37.15         6.21        12.59 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        9.93        27.78        11.90        36.49        16.41        76.21 
TCGA-49-4490 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4510 TCGA-49-4512 
       12.66        46.72        14.07        32.84        29.46         5.16 
TCGA-49-6742 TCGA-49-6744 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       15.02        29.26        70.55        14.96        25.81        31.04 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
       49.28         8.05         9.27        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 
       15.12        18.64        29.00        25.12        22.55         3.88 
TCGA-50-6592 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 
       25.51         6.21        33.37        23.05        38.73        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-64-1680 TCGA-64-5774 TCGA-64-5815 
        2.86         0.07        32.61        37.02        87.98        28.44 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6217 TCGA-71-6725 
       18.84        14.04        12.66         5.69        13.87         2.01 
TCGA-73-4659 TCGA-73-4666 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 
       23.38        26.27         5.39         1.25        12.36 

  MUC16 MUTATED MUC16 WILD-TYPE 
           0.79            0.07 
  MUC16 MUTATED MUC16 WILD-TYPE 
         120.79           87.98 
  MUC16 MUTATED MUC16 WILD-TYPE 
         20.565          21.470 
[1] "0.8 - 120.8 (20.6)" "0.1 - 88.0 (21.5)" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED" "MUC16 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "MUC16 MUTATED"   "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
  "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
  "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
  "MUC16 MUTATED"   "MUC16 MUTATED" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
  "MUC16 MUTATED" "MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED" "MUC16 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
  "MUC16 MUTATED"   "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
  "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
  "MUC16 MUTATED"   "MUC16 MUTATED" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
  "MUC16 MUTATED" "MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
  "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
  "MUC16 MUTATED"   "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED" "MUC16 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
  "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
  "MUC16 MUTATED"   "MUC16 MUTATED" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
  "MUC16 MUTATED" "MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
  "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED" "MUC16 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
  "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED" "MUC16 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "MUC16 MUTATED"   "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
  "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
  "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
  "MUC16 MUTATED"   "MUC16 MUTATED" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
  "MUC16 MUTATED" "MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED" "MUC16 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
  "MUC16 MUTATED"   "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
  "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
  "MUC16 MUTATED"   "MUC16 MUTATED" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
  "MUC16 MUTATED" "MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
  "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
  "MUC16 MUTATED"   "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED" "MUC16 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
  "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
  "MUC16 MUTATED"   "MUC16 MUTATED" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
  "MUC16 MUTATED" "MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
  "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED" "MUC16 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
  "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
  "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED" "MUC16 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "MUC16 MUTATED"   "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
  "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
  "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
  "MUC16 MUTATED"   "MUC16 MUTATED" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
  "MUC16 MUTATED" "MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED" "MUC16 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
  "MUC16 MUTATED"   "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
  "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
  "MUC16 MUTATED"   "MUC16 MUTATED" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
  "MUC16 MUTATED" "MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
  "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
  "MUC16 MUTATED"   "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED" "MUC16 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
  "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
  "MUC16 MUTATED"   "MUC16 MUTATED" "MUC16 WILD-TYPE"   "MUC16 MUTATED" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE" "MUC16 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
  "MUC16 MUTATED" "MUC16 WILD-TYPE"   "MUC16 MUTATED" "MUC16 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
  "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED" "MUC16 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"MUC16 WILD-TYPE" "MUC16 WILD-TYPE"   "MUC16 MUTATED"   "MUC16 MUTATED" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
  "MUC16 MUTATED"   "MUC16 MUTATED"   "MUC16 MUTATED" 
[1] "hr=" "1.2"
D123V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  MUC16 MUTATED         19       27         4         7         15          4
  MUC16 WILD-TYPE       18       26         7        16         18          2
                 vv
clus              STAGE IV
  MUC16 MUTATED          3
  MUC16 WILD-TYPE        6
D123V3, multiclass
                 vv
clus              T1 T2 T3 T4
  MUC16 MUTATED   23 42  9  5
  MUC16 WILD-TYPE 18 67  5  3
D123V4, multiclass
    clus
vv   MUC16 MUTATED MUC16 WILD-TYPE
  T1            23              18
  T2            42              67
  T3             9               5
  T4             5               3
                 vv
clus              N0 N1 N2+N3
  MUC16 MUTATED   49 14    14
  MUC16 WILD-TYPE 46 23    21
D123V5, multiclass
       clus
vv      MUC16 MUTATED MUC16 WILD-TYPE
  N0               49              46
  N1               14              23
  N2+N3            14              21
                 vv
clus              M0 M1 MX
  MUC16 MUTATED   67  3  9
  MUC16 WILD-TYPE 76  6  9
D123V6, multiclass
    clus
vv   MUC16 MUTATED MUC16 WILD-TYPE
  M0            67              76
  M1             3               6
  MX             9               9
D123V7, binary
                 cls
clus               0  1
  MUC16 MUTATED   46 33
  MUC16 WILD-TYPE 47 46
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MUC16 MUTATED     46   33
  MUC16 WILD-TYPE   47   46
        clus
vv       MUC16 MUTATED MUC16 WILD-TYPE
  FEMALE            46              47
  MALE              33              46
D123V8, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  MUC16 MUTATED                            1                                18
  MUC16 WILD-TYPE                          1                                21
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  MUC16 MUTATED                                                   53
  MUC16 WILD-TYPE                                                 62
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  MUC16 MUTATED                                            0
  MUC16 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  MUC16 MUTATED                                               2
  MUC16 WILD-TYPE                                             0
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  MUC16 MUTATED                                2
  MUC16 WILD-TYPE                              0
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  MUC16 MUTATED                                    1
  MUC16 WILD-TYPE                                  1
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  MUC16 MUTATED                              0                             2
  MUC16 WILD-TYPE                            2                             2
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  MUC16 MUTATED                                               0
  MUC16 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  MUC16 MUTATED                              0
  MUC16 WILD-TYPE                            2
D123V9, multiclass
D123V10, binary
                 cls
clus               0  1
  MUC16 MUTATED    5 74
  MUC16 WILD-TYPE  9 84
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MUC16 MUTATED      5   74
  MUC16 WILD-TYPE    9   84
     clus
vv    MUC16 MUTATED MUC16 WILD-TYPE
  NO              5               9
  YES            74              84
D123V11, continuous
D123V12, continuous
                 vv
clus              R0 R1 R2 RX
  MUC16 MUTATED   53  1  3  5
  MUC16 WILD-TYPE 62  5  1  4
D123V13, multiclass
    clus
vv   MUC16 MUTATED MUC16 WILD-TYPE
  R0            53              62
  R1             1               5
  R2             3               1
  RX             5               4

Clustering(124) Variable = VPS13C MUTATION ANALYSIS
D124V1, survival
                  sevent
clus2               0  1
  VPS13C MUTATED   13  4
  VPS13C WILD-TYPE 86 52
  VPS13C MUTATED VPS13C WILD-TYPE 
              17              138 
  VPS13C MUTATED VPS13C WILD-TYPE 
               4               52 
$`VPS13C MUTATED`
TCGA-05-4382 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 TCGA-05-4403 TCGA-05-4427 
       19.92        37.02         9.96        24.03        19.00        26.01 
TCGA-35-4123 TCGA-44-2656 TCGA-44-6775 TCGA-49-6743 TCGA-50-5066 TCGA-55-1592 
        5.95        46.98        12.16        12.13        31.04        23.05 
TCGA-55-1594 TCGA-64-1676 TCGA-67-3771 TCGA-67-6217 TCGA-73-4677 
       38.73        56.81        20.02        13.87         1.25 

$`VPS13C WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4398 TCGA-05-4402 
       50.07         3.98        14.01        45.01        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 
       20.05         2.96        14.93         8.98        29.95        12.00 
TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        21.99        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 
       15.02        15.02         4.96        28.96        22.03         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        2.04         0.46         7.36         8.68        97.74       120.79 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       14.73        21.93        13.15        44.94        24.36        42.08 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       42.77         3.19         8.09        37.15        38.24        23.51 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21        23.74        13.71        12.59        13.38        10.78 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6776 TCGA-44-6777 
        9.93        27.78        11.90         5.42        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
        5.16        55.89        15.02        29.26        17.13        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 
       71.47        70.55        14.96        25.81        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12        18.64        29.00        25.12        22.55        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        87.98         2.04        42.90 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 
       28.41        51.25        28.44         0.99        18.84        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
       12.66         5.69         4.60         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        26.27        15.35         4.27         1.32         5.39 
TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       12.36        10.62        41.33        10.16         2.60        13.71 

  VPS13C MUTATED VPS13C WILD-TYPE 
            1.25             0.07 
  VPS13C MUTATED VPS13C WILD-TYPE 
           56.81           120.79 
  VPS13C MUTATED VPS13C WILD-TYPE 
           20.02            21.06 
[1] "1.2 - 56.8 (20.0)"  "0.1 - 120.8 (21.1)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE"   "VPS13C MUTATED" "VPS13C WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"VPS13C WILD-TYPE"   "VPS13C MUTATED"   "VPS13C MUTATED"   "VPS13C MUTATED" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE"   "VPS13C MUTATED" "VPS13C WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "VPS13C MUTATED" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"VPS13C WILD-TYPE"   "VPS13C MUTATED" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"VPS13C WILD-TYPE"   "VPS13C MUTATED" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE"   "VPS13C MUTATED" "VPS13C WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
  "VPS13C MUTATED" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
  "VPS13C MUTATED" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"VPS13C WILD-TYPE"   "VPS13C MUTATED"   "VPS13C MUTATED" "VPS13C WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"VPS13C WILD-TYPE"   "VPS13C MUTATED" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
  "VPS13C MUTATED" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE"   "VPS13C MUTATED" "VPS13C WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
  "VPS13C MUTATED" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE"   "VPS13C MUTATED" "VPS13C WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"VPS13C WILD-TYPE"   "VPS13C MUTATED"   "VPS13C MUTATED"   "VPS13C MUTATED" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE"   "VPS13C MUTATED" "VPS13C WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "VPS13C MUTATED" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"VPS13C WILD-TYPE"   "VPS13C MUTATED" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"VPS13C WILD-TYPE"   "VPS13C MUTATED" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE"   "VPS13C MUTATED" "VPS13C WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
  "VPS13C MUTATED" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
  "VPS13C MUTATED" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"VPS13C WILD-TYPE"   "VPS13C MUTATED"   "VPS13C MUTATED" "VPS13C WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"VPS13C WILD-TYPE"   "VPS13C MUTATED" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
  "VPS13C MUTATED" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE"   "VPS13C MUTATED" "VPS13C WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
  "VPS13C MUTATED" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE"   "VPS13C MUTATED" "VPS13C WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"VPS13C WILD-TYPE"   "VPS13C MUTATED"   "VPS13C MUTATED"   "VPS13C MUTATED" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE"   "VPS13C MUTATED" "VPS13C WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "VPS13C MUTATED" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"VPS13C WILD-TYPE"   "VPS13C MUTATED" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"VPS13C WILD-TYPE"   "VPS13C MUTATED" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE"   "VPS13C MUTATED" "VPS13C WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
  "VPS13C MUTATED" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
  "VPS13C MUTATED" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"VPS13C WILD-TYPE"   "VPS13C MUTATED"   "VPS13C MUTATED" "VPS13C WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"VPS13C WILD-TYPE"   "VPS13C MUTATED" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
  "VPS13C MUTATED" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE"   "VPS13C MUTATED" "VPS13C WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
  "VPS13C MUTATED" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
[1] "hr=" "1.5"
D124V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  VPS13C MUTATED          5        7         1         2          3          1
  VPS13C WILD-TYPE       32       46        10        21         30          5
                  vv
clus               STAGE IV
  VPS13C MUTATED          0
  VPS13C WILD-TYPE        9
D124V3, multiclass
                  vv
clus               T1 T2 T3 T4
  VPS13C MUTATED    4 13  1  1
  VPS13C WILD-TYPE 37 96 13  7
D124V4, multiclass
    clus
vv   VPS13C MUTATED VPS13C WILD-TYPE
  T1              4               37
  T2             13               96
  T3              1               13
  T4              1                7
                  vv
clus               N0 N1 N2+N3
  VPS13C MUTATED   12  4     3
  VPS13C WILD-TYPE 83 33    32
D124V5, multiclass
       clus
vv      VPS13C MUTATED VPS13C WILD-TYPE
  N0                12               83
  N1                 4               33
  N2+N3              3               32
                  vv
clus                M0  M1  MX
  VPS13C MUTATED    17   0   2
  VPS13C WILD-TYPE 126   9  16
D124V6, multiclass
    clus
vv   VPS13C MUTATED VPS13C WILD-TYPE
  M0             17              126
  M1              0                9
  MX              2               16
D124V7, binary
                  cls
clus                0  1
  VPS13C MUTATED    7 12
  VPS13C WILD-TYPE 86 67
[1] "tbl2"
                  cls
clus               [,1] [,2]
  VPS13C MUTATED      7   12
  VPS13C WILD-TYPE   86   67
        clus
vv       VPS13C MUTATED VPS13C WILD-TYPE
  FEMALE              7               86
  MALE               12               67
D124V8, continuous
[1] "Remove cluster labels:" "VPS13C MUTATED"        
clus
  VPS13C MUTATED VPS13C WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-5375       TCGA-64-1677       TCGA-64-5778 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"VPS13C WILD-TYPE" "VPS13C WILD-TYPE" "VPS13C WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  VPS13C MUTATED                            0                                 8
  VPS13C WILD-TYPE                          2                                31
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  VPS13C MUTATED                                                    9
  VPS13C WILD-TYPE                                                106
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  VPS13C MUTATED                                            0
  VPS13C WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  VPS13C MUTATED                                               0
  VPS13C WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  VPS13C MUTATED                                1
  VPS13C WILD-TYPE                              1
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  VPS13C MUTATED                                    0
  VPS13C WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  VPS13C MUTATED                              0                             1
  VPS13C WILD-TYPE                            2                             3
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  VPS13C MUTATED                                               0
  VPS13C WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  VPS13C MUTATED                              0
  VPS13C WILD-TYPE                            2
D124V9, multiclass
D124V10, binary
                  cls
clus                 0   1
  VPS13C MUTATED     0  19
  VPS13C WILD-TYPE  14 139
[1] "tbl2"
                  cls
clus               [,1] [,2]
  VPS13C MUTATED      0   19
  VPS13C WILD-TYPE   14  139
     clus
vv    VPS13C MUTATED VPS13C WILD-TYPE
  NO               0               14
  YES             19              139
D124V11, continuous
D124V12, continuous
                  vv
clus                R0  R1  R2  RX
  VPS13C MUTATED    14   0   1   2
  VPS13C WILD-TYPE 101   6   3   7
D124V13, multiclass
    clus
vv   VPS13C MUTATED VPS13C WILD-TYPE
  R0             14              101
  R1              0                6
  R2              1                3
  RX              2                7

Clustering(125) Variable = HOXA3 MUTATION ANALYSIS
D125V1, survival
                 sevent
clus2              0  1
  HOXA3 MUTATED    3  2
  HOXA3 WILD-TYPE 96 54
  HOXA3 MUTATED HOXA3 WILD-TYPE 
              5             150 
  HOXA3 MUTATED HOXA3 WILD-TYPE 
              2              54 
$`HOXA3 MUTATED`
TCGA-05-4396 TCGA-05-5428 TCGA-38-4629 TCGA-49-6743 TCGA-64-5778 
        9.96        22.03        28.37        12.13        42.90 

$`HOXA3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
       15.02         4.96        28.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       49.02        35.28        11.64        44.61        14.73        21.93 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       46.98        13.15        44.94        24.36        42.08        42.77 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        37.15        38.24        23.51         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
       23.74        13.71        12.59        13.38        10.78         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
       27.78        11.90         5.42        12.16        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
        5.16        55.89        15.02        29.26        17.13        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        70.55        14.96        25.81        31.04        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12        18.64        29.00        25.12        22.55 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       37.02        87.98         2.04        28.41        51.25        28.44 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99        20.02        18.84        14.04        12.66         5.69 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        4.60        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       26.27        15.35         4.27         1.32         5.39         1.25 
TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       12.36        10.62        41.33        10.16         2.60        13.71 

  HOXA3 MUTATED HOXA3 WILD-TYPE 
           9.96            0.07 
  HOXA3 MUTATED HOXA3 WILD-TYPE 
          42.90          120.79 
  HOXA3 MUTATED HOXA3 WILD-TYPE 
         22.030          20.565 
[1] "10.0 - 42.9 (22.0)" "0.1 - 120.8 (20.6)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE"   "HOXA3 MUTATED" "HOXA3 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
  "HOXA3 MUTATED" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE"   "HOXA3 MUTATED" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
  "HOXA3 MUTATED" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE"   "HOXA3 MUTATED" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE"   "HOXA3 MUTATED" "HOXA3 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
  "HOXA3 MUTATED" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE"   "HOXA3 MUTATED" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
  "HOXA3 MUTATED" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE"   "HOXA3 MUTATED" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE"   "HOXA3 MUTATED" "HOXA3 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
  "HOXA3 MUTATED" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE"   "HOXA3 MUTATED" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
  "HOXA3 MUTATED" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE"   "HOXA3 MUTATED" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
[1] "hr=" "1.3"
D125V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  HOXA3 MUTATED          0        1         1         2          1          1
  HOXA3 WILD-TYPE       37       52        10        21         32          5
                 vv
clus              STAGE IV
  HOXA3 MUTATED          0
  HOXA3 WILD-TYPE        9
D125V3, multiclass
                 vv
clus               T1  T2  T3  T4
  HOXA3 MUTATED     2   1   2   1
  HOXA3 WILD-TYPE  39 108  12   7
D125V4, multiclass
    clus
vv   HOXA3 MUTATED HOXA3 WILD-TYPE
  T1             2              39
  T2             1             108
  T3             2              12
  T4             1               7
                 vv
clus              N0 N1 N2+N3
  HOXA3 MUTATED    3  2     1
  HOXA3 WILD-TYPE 92 35    34
D125V5, multiclass
       clus
vv      HOXA3 MUTATED HOXA3 WILD-TYPE
  N0                3              92
  N1                2              35
  N2+N3             1              34
                 vv
clus               M0  M1  MX
  HOXA3 MUTATED     4   0   2
  HOXA3 WILD-TYPE 139   9  16
D125V6, multiclass
    clus
vv   HOXA3 MUTATED HOXA3 WILD-TYPE
  M0             4             139
  M1             0               9
  MX             2              16
D125V7, binary
                 cls
clus               0  1
  HOXA3 MUTATED    2  4
  HOXA3 WILD-TYPE 91 75
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HOXA3 MUTATED      2    4
  HOXA3 WILD-TYPE   91   75
        clus
vv       HOXA3 MUTATED HOXA3 WILD-TYPE
  FEMALE             2              91
  MALE               4              75
D125V8, continuous
[1] "Remove cluster labels:" "HOXA3 MUTATED"         
clus
  HOXA3 MUTATED HOXA3 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" "HOXA3 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  HOXA3 MUTATED                            0                                 2
  HOXA3 WILD-TYPE                          2                                37
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  HOXA3 MUTATED                                                    2
  HOXA3 WILD-TYPE                                                113
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  HOXA3 MUTATED                                            0
  HOXA3 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  HOXA3 MUTATED                                               1
  HOXA3 WILD-TYPE                                             1
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  HOXA3 MUTATED                                1
  HOXA3 WILD-TYPE                              1
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  HOXA3 MUTATED                                    0
  HOXA3 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  HOXA3 MUTATED                              0                             0
  HOXA3 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  HOXA3 MUTATED                                               0
  HOXA3 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  HOXA3 MUTATED                              0
  HOXA3 WILD-TYPE                            2
D125V9, multiclass
D125V10, binary
                 cls
clus                0   1
  HOXA3 MUTATED     0   6
  HOXA3 WILD-TYPE  14 152
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HOXA3 MUTATED      0    6
  HOXA3 WILD-TYPE   14  152
     clus
vv    HOXA3 MUTATED HOXA3 WILD-TYPE
  NO              0              14
  YES             6             152
D125V11, continuous
D125V12, continuous
                 vv
clus               R0  R1  R2  RX
  HOXA3 MUTATED     5   0   0   0
  HOXA3 WILD-TYPE 110   6   4   9
D125V13, multiclass
    clus
vv   HOXA3 MUTATED HOXA3 WILD-TYPE
  R0             5             110
  R1             0               6
  R2             0               4
  RX             0               9

Clustering(126) Variable = TBX15 MUTATION ANALYSIS
D126V1, survival
                 sevent
clus2              0  1
  TBX15 MUTATED    4  6
  TBX15 WILD-TYPE 95 50
  TBX15 MUTATED TBX15 WILD-TYPE 
             10             145 
  TBX15 MUTATED TBX15 WILD-TYPE 
              6              50 
$`TBX15 MUTATED`
TCGA-05-4396 TCGA-05-4398 TCGA-05-4427 TCGA-38-4630 TCGA-38-4632 TCGA-44-2666 
        9.96        47.05        26.01        35.28        44.61         3.19 
TCGA-49-4488 TCGA-64-5779 TCGA-73-4662 TCGA-91-6829 
       28.57        28.41        29.95        41.33 

$`TBX15 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02        15.02         4.96 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
       28.96        22.03         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        97.74       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4631 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       28.37        11.64        14.73        21.93        46.98        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2668 TCGA-44-3396 
       44.94        24.36        42.08        42.77         8.09        37.15 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
       38.24        23.51         6.21        23.74        13.71        12.59 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
       13.38        10.78         9.93        27.78        11.90         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
       12.16        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.11        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46         5.16        55.89        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       29.26        17.13        20.48        71.47        70.55        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81        31.04        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12        18.64 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
       29.00        25.12        22.55        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        87.98         2.04 
TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       42.90        51.25        28.44         0.99        20.02        18.84 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
       14.04        12.66         5.69         4.60        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       52.57        23.38        26.27        15.35         4.27         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 
        5.39         1.25        12.36        10.62        10.16         2.60 
TCGA-91-6836 
       13.71 

  TBX15 MUTATED TBX15 WILD-TYPE 
           3.19            0.07 
  TBX15 MUTATED TBX15 WILD-TYPE 
          47.05          120.79 
  TBX15 MUTATED TBX15 WILD-TYPE 
          29.26           20.02 
[1] "3.2 - 47.0 (29.3)"  "0.1 - 120.8 (20.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
  "TBX15 MUTATED" "TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE"   "TBX15 MUTATED" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
  "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE"   "TBX15 MUTATED" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
  "TBX15 MUTATED" "TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE"   "TBX15 MUTATED" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
  "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE"   "TBX15 MUTATED" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
  "TBX15 MUTATED" "TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE"   "TBX15 MUTATED" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
  "TBX15 MUTATED" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE"   "TBX15 MUTATED" "TBX15 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE"   "TBX15 MUTATED" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
[1] "hr=" "1.5"
D126V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  TBX15 MUTATED          2        3         0         1          1          3
  TBX15 WILD-TYPE       35       50        11        22         32          3
                 vv
clus              STAGE IV
  TBX15 MUTATED          1
  TBX15 WILD-TYPE        8
D126V3, multiclass
                 vv
clus               T1  T2  T3  T4
  TBX15 MUTATED     2   6   0   3
  TBX15 WILD-TYPE  39 103  14   5
D126V4, multiclass
    clus
vv   TBX15 MUTATED TBX15 WILD-TYPE
  T1             2              39
  T2             6             103
  T3             0              14
  T4             3               5
                 vv
clus              N0 N1 N2+N3
  TBX15 MUTATED    5  3     3
  TBX15 WILD-TYPE 90 34    32
D126V5, multiclass
       clus
vv      TBX15 MUTATED TBX15 WILD-TYPE
  N0                5              90
  N1                3              34
  N2+N3             3              32
                 vv
clus               M0  M1  MX
  TBX15 MUTATED     8   1   2
  TBX15 WILD-TYPE 135   8  16
D126V6, multiclass
    clus
vv   TBX15 MUTATED TBX15 WILD-TYPE
  M0             8             135
  M1             1               8
  MX             2              16
D126V7, binary
                 cls
clus               0  1
  TBX15 MUTATED    5  6
  TBX15 WILD-TYPE 88 73
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TBX15 MUTATED      5    6
  TBX15 WILD-TYPE   88   73
        clus
vv       TBX15 MUTATED TBX15 WILD-TYPE
  FEMALE             5              88
  MALE               6              73
D126V8, continuous
[1] "Remove cluster labels:" "TBX15 MUTATED"         
clus
  TBX15 MUTATED TBX15 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4666 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  TBX15 MUTATED                            1                                 4
  TBX15 WILD-TYPE                          1                                35
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  TBX15 MUTATED                                                    4
  TBX15 WILD-TYPE                                                111
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  TBX15 MUTATED                                            0
  TBX15 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  TBX15 MUTATED                                               1
  TBX15 WILD-TYPE                                             1
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  TBX15 MUTATED                                0
  TBX15 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  TBX15 MUTATED                                    0
  TBX15 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  TBX15 MUTATED                              0                             1
  TBX15 WILD-TYPE                            2                             3
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  TBX15 MUTATED                                               0
  TBX15 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  TBX15 MUTATED                              0
  TBX15 WILD-TYPE                            2
D126V9, multiclass
D126V10, binary
                 cls
clus                0   1
  TBX15 MUTATED     1  10
  TBX15 WILD-TYPE  13 148
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TBX15 MUTATED      1   10
  TBX15 WILD-TYPE   13  148
     clus
vv    TBX15 MUTATED TBX15 WILD-TYPE
  NO              1              13
  YES            10             148
D126V11, continuous
D126V12, continuous
                 vv
clus               R0  R1  R2  RX
  TBX15 MUTATED    10   1   0   0
  TBX15 WILD-TYPE 105   5   4   9
D126V13, multiclass
    clus
vv   TBX15 MUTATED TBX15 WILD-TYPE
  R0            10             105
  R1             1               5
  R2             0               4
  RX             0               9

Clustering(127) Variable = OR56A4 MUTATION ANALYSIS
D127V1, survival
                  sevent
clus2               0  1
  OR56A4 MUTATED    4  2
  OR56A4 WILD-TYPE 95 54
  OR56A4 MUTATED OR56A4 WILD-TYPE 
               6              149 
  OR56A4 MUTATED OR56A4 WILD-TYPE 
               2               54 
$`OR56A4 MUTATED`
TCGA-05-4382 TCGA-44-6778 TCGA-50-6590 TCGA-55-1592 TCGA-64-1676 TCGA-73-4662 
       19.92        36.49        42.31        23.05        56.81        29.95 

$`OR56A4 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 
       50.07         3.98        14.01        45.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 
       15.02         4.96        28.96        22.03         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        97.74       120.79 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       14.73        21.93        46.98        13.15        44.94        24.36 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       42.08        42.77         3.19         8.09        37.15        38.24 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
       23.51         6.21        23.74        13.71        12.59        13.38 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
       10.78         9.93        27.78        11.90         5.42        12.16 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       63.72        32.45        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46         5.16        55.89        15.02        12.13        29.26 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
       17.13        20.48        71.47        70.55        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       31.04        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12        18.64        29.00 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       25.12        22.55         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
        6.21        33.37        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
        0.07        32.61         0.79        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       87.98         2.04        42.90        28.41        51.25        28.44 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99        20.02        18.84        14.04        12.66         5.69 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 
        4.60        13.87         2.01        52.57        23.38        26.27 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 
       15.35         4.27         1.32         5.39         1.25        12.36 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       10.62        41.33        10.16         2.60        13.71 

  OR56A4 MUTATED OR56A4 WILD-TYPE 
           19.92             0.07 
  OR56A4 MUTATED OR56A4 WILD-TYPE 
           56.81           120.79 
  OR56A4 MUTATED OR56A4 WILD-TYPE 
           33.22            20.05 
[1] "19.9 - 56.8 (33.2)" "0.1 - 120.8 (20.1)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE"   "OR56A4 MUTATED" "OR56A4 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"OR56A4 WILD-TYPE"   "OR56A4 MUTATED" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE"   "OR56A4 MUTATED" "OR56A4 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"OR56A4 WILD-TYPE"   "OR56A4 MUTATED" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"OR56A4 WILD-TYPE"   "OR56A4 MUTATED" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE"   "OR56A4 MUTATED" "OR56A4 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE"   "OR56A4 MUTATED" "OR56A4 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"OR56A4 WILD-TYPE"   "OR56A4 MUTATED" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE"   "OR56A4 MUTATED" "OR56A4 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"OR56A4 WILD-TYPE"   "OR56A4 MUTATED" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"OR56A4 WILD-TYPE"   "OR56A4 MUTATED" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE"   "OR56A4 MUTATED" "OR56A4 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE"   "OR56A4 MUTATED" "OR56A4 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"OR56A4 WILD-TYPE"   "OR56A4 MUTATED" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE"   "OR56A4 MUTATED" "OR56A4 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"OR56A4 WILD-TYPE"   "OR56A4 MUTATED" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"OR56A4 WILD-TYPE"   "OR56A4 MUTATED" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE"   "OR56A4 MUTATED" "OR56A4 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
[1] "hr=" "1.6"
D127V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  OR56A4 MUTATED          4        2         0         0          0          0
  OR56A4 WILD-TYPE       33       51        11        23         33          6
                  vv
clus               STAGE IV
  OR56A4 MUTATED          0
  OR56A4 WILD-TYPE        9
D127V3, multiclass
                  vv
clus                T1  T2  T3  T4
  OR56A4 MUTATED     3   3   0   0
  OR56A4 WILD-TYPE  38 106  14   8
D127V4, multiclass
    clus
vv   OR56A4 MUTATED OR56A4 WILD-TYPE
  T1              3               38
  T2              3              106
  T3              0               14
  T4              0                8
                  vv
clus               N0 N1 N2+N3
  OR56A4 MUTATED    6  0     0
  OR56A4 WILD-TYPE 89 37    35
D127V5, multiclass
       clus
vv      OR56A4 MUTATED OR56A4 WILD-TYPE
  N0                 6               89
  N1                 0               37
  N2+N3              0               35
                  vv
clus                M0  M1  MX
  OR56A4 MUTATED     5   0   1
  OR56A4 WILD-TYPE 138   9  17
D127V6, multiclass
    clus
vv   OR56A4 MUTATED OR56A4 WILD-TYPE
  M0              5              138
  M1              0                9
  MX              1               17
D127V7, binary
                  cls
clus                0  1
  OR56A4 MUTATED    2  4
  OR56A4 WILD-TYPE 91 75
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR56A4 MUTATED      2    4
  OR56A4 WILD-TYPE   91   75
        clus
vv       OR56A4 MUTATED OR56A4 WILD-TYPE
  FEMALE              2               91
  MALE                4               75
D127V8, continuous
[1] "Remove cluster labels:" "OR56A4 MUTATED"        
clus
  OR56A4 MUTATED OR56A4 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-64-5778       TCGA-71-6725       TCGA-73-4659       TCGA-73-4666 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR56A4 MUTATED                            0                                 1
  OR56A4 WILD-TYPE                          2                                38
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR56A4 MUTATED                                                    5
  OR56A4 WILD-TYPE                                                110
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR56A4 MUTATED                                            0
  OR56A4 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR56A4 MUTATED                                               0
  OR56A4 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  OR56A4 MUTATED                                0
  OR56A4 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  OR56A4 MUTATED                                    0
  OR56A4 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR56A4 MUTATED                              0                             0
  OR56A4 WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR56A4 MUTATED                                               0
  OR56A4 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  OR56A4 MUTATED                              0
  OR56A4 WILD-TYPE                            2
D127V9, multiclass
D127V10, binary
                  cls
clus                 0   1
  OR56A4 MUTATED     0   6
  OR56A4 WILD-TYPE  14 152
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR56A4 MUTATED      0    6
  OR56A4 WILD-TYPE   14  152
     clus
vv    OR56A4 MUTATED OR56A4 WILD-TYPE
  NO               0               14
  YES              6              152
D127V11, continuous
D127V12, continuous
                  vv
clus                R0  R1  R2  RX
  OR56A4 MUTATED     4   0   0   0
  OR56A4 WILD-TYPE 111   6   4   9
D127V13, multiclass
    clus
vv   OR56A4 MUTATED OR56A4 WILD-TYPE
  R0              4              111
  R1              0                6
  R2              0                4
  RX              0                9

Clustering(128) Variable = HCK MUTATION ANALYSIS
D128V1, survival
               sevent
clus2            0  1
  HCK MUTATED    6  0
  HCK WILD-TYPE 93 56
  HCK MUTATED HCK WILD-TYPE 
            6           149 
  HCK MUTATED HCK WILD-TYPE 
            0            56 
$`HCK MUTATED`
TCGA-05-4398 TCGA-44-6144 TCGA-50-5941 TCGA-55-5899 TCGA-67-3771 TCGA-67-3772 
       47.05        13.38        18.64         2.86        20.02        18.84 

$`HCK WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
        9.96        24.03         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 
       15.02         4.96        28.96        22.03         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        97.74       120.79 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       14.73        21.93        46.98        13.15        44.94        24.36 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       42.08        42.77         3.19         8.09        37.15        38.24 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6145 
       23.51         6.21        23.74        13.71        12.59        10.78 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93        27.78        11.90         5.42        12.16        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46         5.16        55.89        15.02        12.13        29.26 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
       17.13        20.48        71.47        70.55        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       31.04        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 
       77.88        21.47         8.45        15.12        29.00        25.12 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       22.55        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        87.98         2.04        42.90        28.41        51.25 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       28.44         0.99        14.04        12.66         5.69         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        26.27 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 
       15.35         4.27         1.32         5.39         1.25        12.36 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       10.62        41.33        10.16         2.60        13.71 

  HCK MUTATED HCK WILD-TYPE 
         2.86          0.07 
  HCK MUTATED HCK WILD-TYPE 
        47.05        120.79 
  HCK MUTATED HCK WILD-TYPE 
        18.74         21.93 
[1] "2.9 - 47.0 (18.7)"  "0.1 - 120.8 (21.9)"
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE"   "HCK MUTATED" "HCK WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428    TCGA-05-5429 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
  "HCK MUTATED" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"HCK WILD-TYPE" "HCK WILD-TYPE"   "HCK MUTATED" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"HCK WILD-TYPE" "HCK WILD-TYPE"   "HCK MUTATED" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"HCK WILD-TYPE" "HCK WILD-TYPE"   "HCK MUTATED"   "HCK MUTATED" "HCK WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-86-6562 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-91-6828    TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE"   "HCK MUTATED" "HCK WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428    TCGA-05-5429 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
  "HCK MUTATED" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"HCK WILD-TYPE" "HCK WILD-TYPE"   "HCK MUTATED" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"HCK WILD-TYPE" "HCK WILD-TYPE"   "HCK MUTATED" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"HCK WILD-TYPE" "HCK WILD-TYPE"   "HCK MUTATED"   "HCK MUTATED" "HCK WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-86-6562 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-91-6828    TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE"   "HCK MUTATED" "HCK WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428    TCGA-05-5429 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
  "HCK MUTATED" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"HCK WILD-TYPE" "HCK WILD-TYPE"   "HCK MUTATED" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"HCK WILD-TYPE" "HCK WILD-TYPE"   "HCK MUTATED" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"HCK WILD-TYPE" "HCK WILD-TYPE"   "HCK MUTATED"   "HCK MUTATED" "HCK WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-86-6562 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-91-6828    TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
[1] "hr="     "2.6e+07"
D128V2, continuous
               vv
clus            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  HCK MUTATED          3        1         0         0          1          1
  HCK WILD-TYPE       34       52        11        23         32          5
               vv
clus            STAGE IV
  HCK MUTATED          0
  HCK WILD-TYPE        9
D128V3, multiclass
               vv
clus             T1  T2  T3  T4
  HCK MUTATED     3   2   0   1
  HCK WILD-TYPE  38 107  14   7
D128V4, multiclass
    clus
vv   HCK MUTATED HCK WILD-TYPE
  T1           3            38
  T2           2           107
  T3           0            14
  T4           1             7
               vv
clus            N0 N1 N2+N3
  HCK MUTATED    3  1     2
  HCK WILD-TYPE 92 36    33
D128V5, multiclass
       clus
vv      HCK MUTATED HCK WILD-TYPE
  N0              3            92
  N1              1            36
  N2+N3           2            33
               vv
clus             M0  M1  MX
  HCK MUTATED     6   0   0
  HCK WILD-TYPE 137   9  18
D128V6, multiclass
    clus
vv   HCK MUTATED HCK WILD-TYPE
  M0           6           137
  M1           0             9
  MX           0            18
D128V7, binary
               cls
clus             0  1
  HCK MUTATED    4  2
  HCK WILD-TYPE 89 77
[1] "tbl2"
               cls
clus            [,1] [,2]
  HCK MUTATED      4    2
  HCK WILD-TYPE   89   77
        clus
vv       HCK MUTATED HCK WILD-TYPE
  FEMALE           4            89
  MALE             2            77
D128V8, continuous
               vv
clus            LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  HCK MUTATED                            0                                 1
  HCK WILD-TYPE                          2                                38
               vv
clus            LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  HCK MUTATED                                                    5
  HCK WILD-TYPE                                                110
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  HCK MUTATED                                            0
  HCK WILD-TYPE                                          1
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  HCK MUTATED                                               0
  HCK WILD-TYPE                                             2
               vv
clus            LUNG CLEAR CELL ADENOCARCINOMA
  HCK MUTATED                                0
  HCK WILD-TYPE                              2
               vv
clus            LUNG MICROPAPILLARY ADENOCARCINOMA LUNG MUCINOUS ADENOCARCINOMA
  HCK MUTATED                                    0                            0
  HCK WILD-TYPE                                  2                            2
               vv
clus            LUNG PAPILLARY ADENOCARCINOMA
  HCK MUTATED                               0
  HCK WILD-TYPE                             4
               vv
clus            LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  HCK MUTATED                                               0
  HCK WILD-TYPE                                             1
               vv
clus            MUCINOUS (COLLOID) CARCINOMA
  HCK MUTATED                              0
  HCK WILD-TYPE                            2
D128V9, multiclass
D128V10, binary
               cls
clus              0   1
  HCK MUTATED     0   6
  HCK WILD-TYPE  14 152
[1] "tbl2"
               cls
clus            [,1] [,2]
  HCK MUTATED      0    6
  HCK WILD-TYPE   14  152
     clus
vv    HCK MUTATED HCK WILD-TYPE
  NO            0            14
  YES           6           152
D128V11, continuous
D128V12, continuous
[1] "Remove cluster labels:" "HCK MUTATED"           
clus
  HCK MUTATED HCK WILD-TYPE 
            2            66 
   TCGA-05-4384    TCGA-05-4390    TCGA-05-4396    TCGA-05-4405    TCGA-05-4410 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-05-4415    TCGA-05-4417    TCGA-05-4424    TCGA-05-4427    TCGA-05-4433 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428    TCGA-35-4122 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-35-4123    TCGA-35-5375    TCGA-38-4625    TCGA-38-4626    TCGA-44-2655 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2662    TCGA-44-2666 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-44-2668    TCGA-44-3396    TCGA-44-3398    TCGA-44-3918    TCGA-44-4112 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-44-5645    TCGA-44-6145    TCGA-44-6147    TCGA-44-6148    TCGA-44-6774 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778    TCGA-44-6779 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-49-4486    TCGA-49-4494    TCGA-49-4505    TCGA-55-1592    TCGA-55-1594 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-6642    TCGA-55-6712    TCGA-64-1677 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-64-1678    TCGA-64-1680    TCGA-64-5774    TCGA-64-5775    TCGA-64-5778 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-64-5779    TCGA-64-5781    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-73-4668    TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-91-6829 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-91-6836 
"HCK WILD-TYPE" 
               vv
clus             R0  R1  R2  RX
  HCK MUTATED     3   0   0   1
  HCK WILD-TYPE 112   6   4   8
D128V13, multiclass
    clus
vv   HCK MUTATED HCK WILD-TYPE
  R0           3           112
  R1           0             6
  R2           0             4
  RX           1             8

Clustering(129) Variable = KDR MUTATION ANALYSIS
D129V1, survival
               sevent
clus2            0  1
  KDR MUTATED   14  6
  KDR WILD-TYPE 85 50
  KDR MUTATED KDR WILD-TYPE 
           20           135 
  KDR MUTATED KDR WILD-TYPE 
            6            50 
$`KDR MUTATED`
TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4424 TCGA-05-4430 TCGA-38-4626 
       19.92        14.01         9.96        30.02        25.02       120.79 
TCGA-38-4631 TCGA-44-2659 TCGA-44-4112 TCGA-44-6776 TCGA-50-5049 TCGA-50-5066 
       11.64        44.94        23.74        63.72        70.55        31.04 
TCGA-50-6590 TCGA-50-6594 TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-67-3773 
       42.31        12.16         2.04        42.90        51.25        14.04 
TCGA-73-4666 TCGA-73-4668 
       26.27        15.35 

$`KDR WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4389 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       50.07         3.98        45.01        37.02        24.03        47.05 
TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
        8.02        19.00        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4432 
       29.95        12.00        21.99        26.01        26.01        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 
       24.00        15.02        15.02         4.96        28.96        22.03 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 
       97.74        37.71        49.02        28.37        35.28        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 
       14.73        21.93        46.98        13.15        24.36        42.08 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       42.77         3.19         8.09        37.15        38.24        23.51 
TCGA-44-3919 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        6.21        13.71        12.59        13.38        10.78         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6777 TCGA-44-6778 
       27.78        11.90         5.42        12.16        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46         5.16 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       55.89        15.02        12.13        29.26        17.13        20.48 
TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       71.47        14.96        25.81        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 
       18.64        29.00        25.12        22.55         3.88        25.51 
TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       11.05         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5779 TCGA-64-5815 
       20.65        39.09        37.02        87.98        28.41        28.44 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        0.99        20.02        18.84        12.66         5.69         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4670 
       13.87         2.01        52.57        23.38        29.95         4.27 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 
        1.32         5.39         1.25        12.36        10.62        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       10.16         2.60        13.71 

  KDR MUTATED KDR WILD-TYPE 
         2.04          0.07 
  KDR MUTATED KDR WILD-TYPE 
       120.79         97.74 
  KDR MUTATED KDR WILD-TYPE 
       25.645        20.050 
[1] "2.0 - 120.8 (25.6)" "0.1 - 97.7 (20.1)" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"KDR WILD-TYPE" "KDR WILD-TYPE"   "KDR MUTATED"   "KDR MUTATED" "KDR WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"KDR WILD-TYPE" "KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428    TCGA-05-5429 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"KDR WILD-TYPE" "KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"KDR WILD-TYPE" "KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"KDR WILD-TYPE" "KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE"   "KDR MUTATED" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"KDR WILD-TYPE" "KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
  "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"KDR WILD-TYPE"   "KDR MUTATED"   "KDR MUTATED" "KDR WILD-TYPE"   "KDR MUTATED" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE"   "KDR MUTATED" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE"   "KDR MUTATED"   "KDR MUTATED" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-86-6562 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-91-6828    TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"KDR WILD-TYPE" "KDR WILD-TYPE"   "KDR MUTATED"   "KDR MUTATED" "KDR WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"KDR WILD-TYPE" "KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428    TCGA-05-5429 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"KDR WILD-TYPE" "KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"KDR WILD-TYPE" "KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"KDR WILD-TYPE" "KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE"   "KDR MUTATED" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"KDR WILD-TYPE" "KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
  "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"KDR WILD-TYPE"   "KDR MUTATED"   "KDR MUTATED" "KDR WILD-TYPE"   "KDR MUTATED" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE"   "KDR MUTATED" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE"   "KDR MUTATED"   "KDR MUTATED" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-86-6562 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-91-6828    TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"KDR WILD-TYPE" "KDR WILD-TYPE"   "KDR MUTATED"   "KDR MUTATED" "KDR WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"KDR WILD-TYPE" "KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428    TCGA-05-5429 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"KDR WILD-TYPE" "KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"KDR WILD-TYPE" "KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"KDR WILD-TYPE" "KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE"   "KDR MUTATED" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"KDR WILD-TYPE" "KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"KDR WILD-TYPE"   "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
  "KDR MUTATED" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"KDR WILD-TYPE"   "KDR MUTATED"   "KDR MUTATED" "KDR WILD-TYPE"   "KDR MUTATED" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE"   "KDR MUTATED" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE"   "KDR MUTATED"   "KDR MUTATED" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-86-6562 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
   TCGA-91-6828    TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" "KDR WILD-TYPE" 
[1] "hr=" "1.7"
D129V2, continuous
               vv
clus            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  KDR MUTATED          2        9         1         3          3          1
  KDR WILD-TYPE       35       44        10        20         30          5
               vv
clus            STAGE IV
  KDR MUTATED          1
  KDR WILD-TYPE        8
D129V3, multiclass
               vv
clus            T1 T2 T3 T4
  KDR MUTATED    3 13  2  2
  KDR WILD-TYPE 38 96 12  6
D129V4, multiclass
    clus
vv   KDR MUTATED KDR WILD-TYPE
  T1           3            38
  T2          13            96
  T3           2            12
  T4           2             6
               vv
clus            N0 N1 N2+N3
  KDR MUTATED   15  3     2
  KDR WILD-TYPE 80 34    33
D129V5, multiclass
       clus
vv      KDR MUTATED KDR WILD-TYPE
  N0             15            80
  N1              3            34
  N2+N3           2            33
               vv
clus             M0  M1  MX
  KDR MUTATED    18   1   1
  KDR WILD-TYPE 125   8  17
D129V6, multiclass
    clus
vv   KDR MUTATED KDR WILD-TYPE
  M0          18           125
  M1           1             8
  MX           1            17
D129V7, binary
               cls
clus             0  1
  KDR MUTATED   12  8
  KDR WILD-TYPE 81 71
[1] "tbl2"
               cls
clus            [,1] [,2]
  KDR MUTATED     12    8
  KDR WILD-TYPE   81   71
        clus
vv       KDR MUTATED KDR WILD-TYPE
  FEMALE          12            81
  MALE             8            71
D129V8, continuous
               vv
clus            LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  KDR MUTATED                            0                                 7
  KDR WILD-TYPE                          2                                32
               vv
clus            LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  KDR MUTATED                                                   11
  KDR WILD-TYPE                                                104
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  KDR MUTATED                                            0
  KDR WILD-TYPE                                          1
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  KDR MUTATED                                               1
  KDR WILD-TYPE                                             1
               vv
clus            LUNG CLEAR CELL ADENOCARCINOMA
  KDR MUTATED                                0
  KDR WILD-TYPE                              2
               vv
clus            LUNG MICROPAPILLARY ADENOCARCINOMA LUNG MUCINOUS ADENOCARCINOMA
  KDR MUTATED                                    1                            0
  KDR WILD-TYPE                                  1                            2
               vv
clus            LUNG PAPILLARY ADENOCARCINOMA
  KDR MUTATED                               0
  KDR WILD-TYPE                             4
               vv
clus            LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  KDR MUTATED                                               0
  KDR WILD-TYPE                                             1
               vv
clus            MUCINOUS (COLLOID) CARCINOMA
  KDR MUTATED                              0
  KDR WILD-TYPE                            2
D129V9, multiclass
D129V10, binary
               cls
clus              0   1
  KDR MUTATED     2  18
  KDR WILD-TYPE  12 140
[1] "tbl2"
               cls
clus            [,1] [,2]
  KDR MUTATED      2   18
  KDR WILD-TYPE   12  140
     clus
vv    KDR MUTATED KDR WILD-TYPE
  NO            2            12
  YES          18           140
D129V11, continuous
D129V12, continuous
               vv
clus             R0  R1  R2  RX
  KDR MUTATED    14   1   0   1
  KDR WILD-TYPE 101   5   4   8
D129V13, multiclass
    clus
vv   KDR MUTATED KDR WILD-TYPE
  R0          14           101
  R1           1             5
  R2           0             4
  RX           1             8

Clustering(130) Variable = BRS3 MUTATION ANALYSIS
D130V1, survival
                sevent
clus2             0  1
  BRS3 MUTATED    6  1
  BRS3 WILD-TYPE 93 55
  BRS3 MUTATED BRS3 WILD-TYPE 
             7            148 
  BRS3 MUTATED BRS3 WILD-TYPE 
             1             55 
$`BRS3 MUTATED`
TCGA-05-4390 TCGA-05-4396 TCGA-05-4424 TCGA-55-5899 TCGA-67-3771 TCGA-67-6217 
       37.02         9.96        30.02         2.86        20.02        13.87 
TCGA-73-4662 
       29.95 

$`BRS3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4397 
       50.07         3.98        19.92        14.01        45.01        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
        8.98        29.95        12.00        21.99        26.01        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02        15.02         4.96 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
       28.96        22.03         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        97.74       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61        14.73        21.93 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       46.98        13.15        44.94        24.36        42.08        42.77 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        37.15        38.24        23.51         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
       23.74        13.71        12.59        13.38        10.78         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
       27.78        11.90         5.42        12.16        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
        5.16        55.89        15.02        12.13        29.26        17.13 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        70.55        14.96        25.81        31.04 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12        18.64        29.00        25.12 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       22.55        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        87.98         2.04        42.90        28.41        51.25 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
       28.44         0.99        18.84        14.04        12.66         5.69 
TCGA-67-6216 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 TCGA-73-4668 
        4.60         2.01        52.57        23.38        26.27        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 
        4.27         1.32         5.39         1.25        12.36        10.62 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33        10.16         2.60        13.71 

  BRS3 MUTATED BRS3 WILD-TYPE 
          2.86           0.07 
  BRS3 MUTATED BRS3 WILD-TYPE 
         37.02         120.79 
  BRS3 MUTATED BRS3 WILD-TYPE 
         20.02          21.06 
[1] "2.9 - 37.0 (20.0)"  "0.1 - 120.8 (21.1)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"BRS3 WILD-TYPE"   "BRS3 MUTATED"   "BRS3 MUTATED" "BRS3 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"BRS3 WILD-TYPE"   "BRS3 MUTATED" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"BRS3 WILD-TYPE"   "BRS3 MUTATED" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
  "BRS3 MUTATED" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE"   "BRS3 MUTATED" "BRS3 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE"   "BRS3 MUTATED" "BRS3 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"BRS3 WILD-TYPE"   "BRS3 MUTATED"   "BRS3 MUTATED" "BRS3 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"BRS3 WILD-TYPE"   "BRS3 MUTATED" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"BRS3 WILD-TYPE"   "BRS3 MUTATED" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
  "BRS3 MUTATED" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE"   "BRS3 MUTATED" "BRS3 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE"   "BRS3 MUTATED" "BRS3 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"BRS3 WILD-TYPE"   "BRS3 MUTATED"   "BRS3 MUTATED" "BRS3 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"BRS3 WILD-TYPE"   "BRS3 MUTATED" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"BRS3 WILD-TYPE"   "BRS3 MUTATED" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
  "BRS3 MUTATED" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE"   "BRS3 MUTATED" "BRS3 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE"   "BRS3 MUTATED" "BRS3 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
[1] "hr=" "2"  
D130V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  BRS3 MUTATED          3        1         1         1          0          1
  BRS3 WILD-TYPE       34       52        10        22         33          5
                vv
clus             STAGE IV
  BRS3 MUTATED          0
  BRS3 WILD-TYPE        9
D130V3, multiclass
                vv
clus              T1  T2  T3  T4
  BRS3 MUTATED     3   2   1   1
  BRS3 WILD-TYPE  38 107  13   7
D130V4, multiclass
    clus
vv   BRS3 MUTATED BRS3 WILD-TYPE
  T1            3             38
  T2            2            107
  T3            1             13
  T4            1              7
                vv
clus             N0 N1 N2+N3
  BRS3 MUTATED    4  3     0
  BRS3 WILD-TYPE 91 34    35
D130V5, multiclass
       clus
vv      BRS3 MUTATED BRS3 WILD-TYPE
  N0               4             91
  N1               3             34
  N2+N3            0             35
                vv
clus              M0  M1  MX
  BRS3 MUTATED     7   0   0
  BRS3 WILD-TYPE 136   9  18
D130V6, multiclass
    clus
vv   BRS3 MUTATED BRS3 WILD-TYPE
  M0            7            136
  M1            0              9
  MX            0             18
D130V7, binary
                cls
clus              0  1
  BRS3 MUTATED    4  3
  BRS3 WILD-TYPE 89 76
[1] "tbl2"
                cls
clus             [,1] [,2]
  BRS3 MUTATED      4    3
  BRS3 WILD-TYPE   89   76
        clus
vv       BRS3 MUTATED BRS3 WILD-TYPE
  FEMALE            4             89
  MALE              3             76
D130V8, continuous
[1] "Remove cluster labels:" "BRS3 MUTATED"          
clus
  BRS3 MUTATED BRS3 WILD-TYPE 
             1             11 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-64-1677 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-64-5778     TCGA-71-6725     TCGA-73-4659     TCGA-73-4666 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4676     TCGA-75-5122 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  BRS3 MUTATED                            0                                 3
  BRS3 WILD-TYPE                          2                                36
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  BRS3 MUTATED                                                    4
  BRS3 WILD-TYPE                                                111
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  BRS3 MUTATED                                            0
  BRS3 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  BRS3 MUTATED                                               0
  BRS3 WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  BRS3 MUTATED                                0
  BRS3 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  BRS3 MUTATED                                    0
  BRS3 WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  BRS3 MUTATED                              0                             0
  BRS3 WILD-TYPE                            2                             4
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  BRS3 MUTATED                                               0
  BRS3 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  BRS3 MUTATED                              0
  BRS3 WILD-TYPE                            2
D130V9, multiclass
D130V10, binary
                cls
clus               0   1
  BRS3 MUTATED     0   7
  BRS3 WILD-TYPE  14 151
[1] "tbl2"
                cls
clus             [,1] [,2]
  BRS3 MUTATED      0    7
  BRS3 WILD-TYPE   14  151
     clus
vv    BRS3 MUTATED BRS3 WILD-TYPE
  NO             0             14
  YES            7            151
D130V11, continuous
D130V12, continuous
                vv
clus              R0  R1  R2  RX
  BRS3 MUTATED     6   1   0   0
  BRS3 WILD-TYPE 109   5   4   9
D130V13, multiclass
    clus
vv   BRS3 MUTATED BRS3 WILD-TYPE
  R0            6            109
  R1            1              5
  R2            0              4
  RX            0              9

Clustering(131) Variable = LPPR4 MUTATION ANALYSIS
D131V1, survival
                 sevent
clus2              0  1
  LPPR4 MUTATED    7  6
  LPPR4 WILD-TYPE 92 50
  LPPR4 MUTATED LPPR4 WILD-TYPE 
             13             142 
  LPPR4 MUTATED LPPR4 WILD-TYPE 
              6              50 
$`LPPR4 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-38-4631 TCGA-44-2656 TCGA-44-4112 TCGA-44-6145 
       19.92         9.96        11.64        46.98        23.74        10.78 
TCGA-44-6147 TCGA-50-5045 TCGA-50-5936 TCGA-50-6590 TCGA-64-1676 TCGA-67-3773 
       27.78        71.47         8.45        42.31        56.81        14.04 
TCGA-73-4668 
       15.35 

$`LPPR4 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4397 
       50.07         3.98        14.01        45.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        4.96        28.96        22.03         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       49.02        28.37        35.28        44.61        14.73        21.93 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        44.94        24.36        42.08        42.77         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-5643 
        8.09        37.15        38.24        23.51         6.21        13.71 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
       12.59        13.38         9.93        11.90         5.42        12.16 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46         5.16        55.89        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
       29.26        17.13        20.48        70.55        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       31.04        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       77.88        21.47        15.12        18.64        29.00        25.12 
TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       22.55         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
        0.07        32.61         0.79        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       87.98         2.04        42.90        28.41        51.25        28.44 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        0.99        20.02        18.84        12.66         5.69         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        26.27 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 
        4.27         1.32         5.39         1.25        12.36        10.62 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33        10.16         2.60        13.71 

  LPPR4 MUTATED LPPR4 WILD-TYPE 
           8.45            0.07 
  LPPR4 MUTATED LPPR4 WILD-TYPE 
          71.47          120.79 
  LPPR4 MUTATED LPPR4 WILD-TYPE 
          19.92           21.06 
[1] "8.4 - 71.5 (19.9)"  "0.1 - 120.8 (21.1)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
  "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
  "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
  "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
  "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
  "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
  "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
  "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
  "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
  "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
[1] "hr=" "1.1"
D131V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  LPPR4 MUTATED          4        6         0         2          1          1
  LPPR4 WILD-TYPE       33       47        11        21         32          5
                 vv
clus              STAGE IV
  LPPR4 MUTATED          0
  LPPR4 WILD-TYPE        9
D131V3, multiclass
                 vv
clus               T1  T2  T3  T4
  LPPR4 MUTATED     3   9   1   1
  LPPR4 WILD-TYPE  38 100  13   7
D131V4, multiclass
    clus
vv   LPPR4 MUTATED LPPR4 WILD-TYPE
  T1             3              38
  T2             9             100
  T3             1              13
  T4             1               7
                 vv
clus              N0 N1 N2+N3
  LPPR4 MUTATED    9  3     1
  LPPR4 WILD-TYPE 86 34    34
D131V5, multiclass
       clus
vv      LPPR4 MUTATED LPPR4 WILD-TYPE
  N0                9              86
  N1                3              34
  N2+N3             1              34
                 vv
clus               M0  M1  MX
  LPPR4 MUTATED    13   0   1
  LPPR4 WILD-TYPE 130   9  17
D131V6, multiclass
    clus
vv   LPPR4 MUTATED LPPR4 WILD-TYPE
  M0            13             130
  M1             0               9
  MX             1              17
D131V7, binary
                 cls
clus               0  1
  LPPR4 MUTATED    9  5
  LPPR4 WILD-TYPE 84 74
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LPPR4 MUTATED      9    5
  LPPR4 WILD-TYPE   84   74
        clus
vv       LPPR4 MUTATED LPPR4 WILD-TYPE
  FEMALE             9              84
  MALE               5              74
D131V8, continuous
[1] "Remove cluster labels:" "LPPR4 MUTATED"         
clus
  LPPR4 MUTATED LPPR4 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4676      TCGA-75-5122 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  LPPR4 MUTATED                            0                                 2
  LPPR4 WILD-TYPE                          2                                37
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  LPPR4 MUTATED                                                   10
  LPPR4 WILD-TYPE                                                105
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  LPPR4 MUTATED                                            0
  LPPR4 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  LPPR4 MUTATED                                               0
  LPPR4 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  LPPR4 MUTATED                                0
  LPPR4 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  LPPR4 MUTATED                                    1
  LPPR4 WILD-TYPE                                  1
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  LPPR4 MUTATED                              0                             0
  LPPR4 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  LPPR4 MUTATED                                               0
  LPPR4 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  LPPR4 MUTATED                              1
  LPPR4 WILD-TYPE                            1
D131V9, multiclass
D131V10, binary
                 cls
clus                0   1
  LPPR4 MUTATED     1  13
  LPPR4 WILD-TYPE  13 145
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LPPR4 MUTATED      1   13
  LPPR4 WILD-TYPE   13  145
     clus
vv    LPPR4 MUTATED LPPR4 WILD-TYPE
  NO              1              13
  YES            13             145
D131V11, continuous
D131V12, continuous
                 vv
clus               R0  R1  R2  RX
  LPPR4 MUTATED     8   0   0   0
  LPPR4 WILD-TYPE 107   6   4   9
D131V13, multiclass
    clus
vv   LPPR4 MUTATED LPPR4 WILD-TYPE
  R0             8             107
  R1             0               6
  R2             0               4
  RX             0               9

Clustering(132) Variable = KDM5C MUTATION ANALYSIS
D132V1, survival
                 sevent
clus2              0  1
  KDM5C MUTATED    3  4
  KDM5C WILD-TYPE 96 52
  KDM5C MUTATED KDM5C WILD-TYPE 
              7             148 
  KDM5C MUTATED KDM5C WILD-TYPE 
              4              52 
$`KDM5C MUTATED`
TCGA-05-4390 TCGA-05-4396 TCGA-05-4417 TCGA-05-4420 TCGA-05-4434 TCGA-49-4486 
       37.02         9.96        14.93        29.95        15.02        76.21 
TCGA-64-1677 
       20.65 

$`KDM5C WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4397 
       50.07         3.98        19.92        14.01        45.01        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 
       47.05         8.02        19.00        20.05         2.96         8.98 
TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
       12.00        30.02        21.99        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 
       25.02        24.00        15.02         4.96        28.96        22.03 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       97.74       120.79        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61        14.73        21.93        46.98        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       44.94        24.36        42.08        42.77         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       37.15        38.24        23.51         6.21        23.74        13.71 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
       12.59        13.38        10.78         9.93        27.78        11.90 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42        12.16        63.72        32.45        36.49        16.41 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46         5.16        55.89        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        29.26        17.13        20.48        71.47        70.55 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81        31.04        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
       18.64        29.00        25.12        22.55        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
        0.79        56.81        39.09        37.02        87.98         2.04 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       42.90        28.41        51.25        28.44         0.99        20.02 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
       18.84        14.04        12.66         5.69         4.60        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        26.27        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 
        4.27         1.32         5.39         1.25        12.36        10.62 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33        10.16         2.60        13.71 

  KDM5C MUTATED KDM5C WILD-TYPE 
           9.96            0.07 
  KDM5C MUTATED KDM5C WILD-TYPE 
          76.21          120.79 
  KDM5C MUTATED KDM5C WILD-TYPE 
         20.650          20.975 
[1] "10.0 - 76.2 (20.6)" "0.1 - 120.8 (21.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"KDM5C WILD-TYPE"   "KDM5C MUTATED"   "KDM5C MUTATED" "KDM5C WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"KDM5C WILD-TYPE"   "KDM5C MUTATED" "KDM5C WILD-TYPE"   "KDM5C MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
  "KDM5C MUTATED" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE"   "KDM5C MUTATED" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE"   "KDM5C MUTATED" "KDM5C WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"KDM5C WILD-TYPE"   "KDM5C MUTATED"   "KDM5C MUTATED" "KDM5C WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"KDM5C WILD-TYPE"   "KDM5C MUTATED" "KDM5C WILD-TYPE"   "KDM5C MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
  "KDM5C MUTATED" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE"   "KDM5C MUTATED" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE"   "KDM5C MUTATED" "KDM5C WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"KDM5C WILD-TYPE"   "KDM5C MUTATED"   "KDM5C MUTATED" "KDM5C WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"KDM5C WILD-TYPE"   "KDM5C MUTATED" "KDM5C WILD-TYPE"   "KDM5C MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
  "KDM5C MUTATED" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE"   "KDM5C MUTATED" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE"   "KDM5C MUTATED" "KDM5C WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
[1] "hr=" "1.3"
D132V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  KDM5C MUTATED          1        3         0         0          1          1
  KDM5C WILD-TYPE       36       50        11        23         32          5
                 vv
clus              STAGE IV
  KDM5C MUTATED          2
  KDM5C WILD-TYPE        7
D132V3, multiclass
                 vv
clus               T1  T2  T3  T4
  KDM5C MUTATED     1   5   0   2
  KDM5C WILD-TYPE  40 104  14   6
D132V4, multiclass
    clus
vv   KDM5C MUTATED KDM5C WILD-TYPE
  T1             1              40
  T2             5             104
  T3             0              14
  T4             2               6
                 vv
clus              N0 N1 N2+N3
  KDM5C MUTATED    4  2     2
  KDM5C WILD-TYPE 91 35    33
D132V5, multiclass
       clus
vv      KDM5C MUTATED KDM5C WILD-TYPE
  N0                4              91
  N1                2              35
  N2+N3             2              33
                 vv
clus               M0  M1  MX
  KDM5C MUTATED     6   2   0
  KDM5C WILD-TYPE 137   7  18
D132V6, multiclass
    clus
vv   KDM5C MUTATED KDM5C WILD-TYPE
  M0             6             137
  M1             2               7
  MX             0              18
D132V7, binary
                 cls
clus               0  1
  KDM5C MUTATED    4  4
  KDM5C WILD-TYPE 89 75
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KDM5C MUTATED      4    4
  KDM5C WILD-TYPE   89   75
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  FEMALE             4              89
  MALE               4              75
D132V8, continuous
[1] "Remove cluster labels:" "KDM5C MUTATED"         
clus
  KDM5C MUTATED KDM5C WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-5778 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  KDM5C MUTATED                            0                                 5
  KDM5C WILD-TYPE                          2                                34
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  KDM5C MUTATED                                                    3
  KDM5C WILD-TYPE                                                112
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  KDM5C MUTATED                                            0
  KDM5C WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  KDM5C MUTATED                                               0
  KDM5C WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  KDM5C MUTATED                                0
  KDM5C WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  KDM5C MUTATED                                    0
  KDM5C WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  KDM5C MUTATED                              0                             0
  KDM5C WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  KDM5C MUTATED                                               0
  KDM5C WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  KDM5C MUTATED                              0
  KDM5C WILD-TYPE                            2
D132V9, multiclass
D132V10, binary
                 cls
clus                0   1
  KDM5C MUTATED     0   8
  KDM5C WILD-TYPE  14 150
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KDM5C MUTATED      0    8
  KDM5C WILD-TYPE   14  150
     clus
vv    KDM5C MUTATED KDM5C WILD-TYPE
  NO              0              14
  YES             8             150
D132V11, continuous
D132V12, continuous
                 vv
clus               R0  R1  R2  RX
  KDM5C MUTATED     6   0   1   1
  KDM5C WILD-TYPE 109   6   3   8
D132V13, multiclass
    clus
vv   KDM5C MUTATED KDM5C WILD-TYPE
  R0             6             109
  R1             0               6
  R2             1               3
  RX             1               8

Clustering(133) Variable = TRPC1 MUTATION ANALYSIS
D133V1, survival
                 sevent
clus2              0  1
  TRPC1 MUTATED    4  1
  TRPC1 WILD-TYPE 95 55
  TRPC1 MUTATED TRPC1 WILD-TYPE 
              5             150 
  TRPC1 MUTATED TRPC1 WILD-TYPE 
              1              55 
$`TRPC1 MUTATED`
TCGA-05-4384 TCGA-05-4396 TCGA-50-5049 TCGA-55-1596 TCGA-64-5781 
       14.01         9.96        70.55        45.17        51.25 

$`TRPC1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4389 TCGA-05-4390 TCGA-05-4397 
       50.07         3.98        19.92        45.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        4.96        28.96        22.03         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61        14.73 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       21.93        46.98        13.15        44.94        24.36        42.08 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       42.77         3.19         8.09        37.15        38.24        23.51 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21        23.74        13.71        12.59        13.38        10.78 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93        27.78        11.90         5.42        12.16        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46         5.16        55.89        15.02        12.13        29.26 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       17.13        20.48        71.47        14.96        25.81        31.04 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12        18.64        29.00        25.12 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       22.55        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 
        6.21        33.37        23.05        38.73        48.62         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 
       37.02        87.98         2.04        42.90        28.41        28.44 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99        20.02        18.84        14.04        12.66         5.69 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        4.60        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       26.27        15.35         4.27         1.32         5.39         1.25 
TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       12.36        10.62        41.33        10.16         2.60        13.71 

  TRPC1 MUTATED TRPC1 WILD-TYPE 
           9.96            0.07 
  TRPC1 MUTATED TRPC1 WILD-TYPE 
          70.55          120.79 
  TRPC1 MUTATED TRPC1 WILD-TYPE 
         45.170          20.565 
[1] "10.0 - 70.5 (45.2)" "0.1 - 120.8 (20.6)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE"   "TRPC1 MUTATED" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE"   "TRPC1 MUTATED" "TRPC1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"TRPC1 WILD-TYPE"   "TRPC1 MUTATED" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
  "TRPC1 MUTATED" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"TRPC1 WILD-TYPE"   "TRPC1 MUTATED" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE"   "TRPC1 MUTATED" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE"   "TRPC1 MUTATED" "TRPC1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"TRPC1 WILD-TYPE"   "TRPC1 MUTATED" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
  "TRPC1 MUTATED" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"TRPC1 WILD-TYPE"   "TRPC1 MUTATED" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE"   "TRPC1 MUTATED" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE"   "TRPC1 MUTATED" "TRPC1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"TRPC1 WILD-TYPE"   "TRPC1 MUTATED" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
  "TRPC1 MUTATED" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"TRPC1 WILD-TYPE"   "TRPC1 MUTATED" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
[1] "hr=" "3"  
D133V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  TRPC1 MUTATED          1        2         0         1          2          1
  TRPC1 WILD-TYPE       36       51        11        22         31          5
                 vv
clus              STAGE IV
  TRPC1 MUTATED          0
  TRPC1 WILD-TYPE        9
D133V3, multiclass
                 vv
clus               T1  T2  T3  T4
  TRPC1 MUTATED     0   5   1   1
  TRPC1 WILD-TYPE  41 104  13   7
D133V4, multiclass
    clus
vv   TRPC1 MUTATED TRPC1 WILD-TYPE
  T1             0              41
  T2             5             104
  T3             1              13
  T4             1               7
                 vv
clus              N0 N1 N2+N3
  TRPC1 MUTATED    3  2     2
  TRPC1 WILD-TYPE 92 35    33
D133V5, multiclass
       clus
vv      TRPC1 MUTATED TRPC1 WILD-TYPE
  N0                3              92
  N1                2              35
  N2+N3             2              33
                 vv
clus               M0  M1  MX
  TRPC1 MUTATED     7   0   0
  TRPC1 WILD-TYPE 136   9  18
D133V6, multiclass
    clus
vv   TRPC1 MUTATED TRPC1 WILD-TYPE
  M0             7             136
  M1             0               9
  MX             0              18
D133V7, binary
                 cls
clus               0  1
  TRPC1 MUTATED    3  4
  TRPC1 WILD-TYPE 90 75
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRPC1 MUTATED      3    4
  TRPC1 WILD-TYPE   90   75
        clus
vv       TRPC1 MUTATED TRPC1 WILD-TYPE
  FEMALE             3              90
  MALE               4              75
D133V8, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  TRPC1 MUTATED                            0                                 3
  TRPC1 WILD-TYPE                          2                                36
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  TRPC1 MUTATED                                                    3
  TRPC1 WILD-TYPE                                                112
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  TRPC1 MUTATED                                            0
  TRPC1 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  TRPC1 MUTATED                                               0
  TRPC1 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  TRPC1 MUTATED                                0
  TRPC1 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  TRPC1 MUTATED                                    0
  TRPC1 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  TRPC1 MUTATED                              0                             1
  TRPC1 WILD-TYPE                            2                             3
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  TRPC1 MUTATED                                               0
  TRPC1 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  TRPC1 MUTATED                              0
  TRPC1 WILD-TYPE                            2
D133V9, multiclass
D133V10, binary
                 cls
clus                0   1
  TRPC1 MUTATED     1   6
  TRPC1 WILD-TYPE  13 152
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRPC1 MUTATED      1    6
  TRPC1 WILD-TYPE   13  152
     clus
vv    TRPC1 MUTATED TRPC1 WILD-TYPE
  NO              1              13
  YES             6             152
D133V11, continuous
D133V12, continuous
                 vv
clus               R0  R1  R2  RX
  TRPC1 MUTATED     4   0   1   1
  TRPC1 WILD-TYPE 111   6   3   8
D133V13, multiclass
    clus
vv   TRPC1 MUTATED TRPC1 WILD-TYPE
  R0             4             111
  R1             0               6
  R2             1               3
  RX             1               8

Clustering(134) Variable = HAX1 MUTATION ANALYSIS
D134V1, survival
                sevent
clus2             0  1
  HAX1 MUTATED    3  1
  HAX1 WILD-TYPE 96 55
  HAX1 MUTATED HAX1 WILD-TYPE 
             4            151 
  HAX1 MUTATED HAX1 WILD-TYPE 
             1             55 
$`HAX1 MUTATED`
TCGA-05-4396 TCGA-38-4625 TCGA-44-5645 TCGA-91-6836 
        9.96        97.74        12.59        13.71 

$`HAX1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 
       15.02         4.96        28.96        22.03         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         5.95         8.68       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61        14.73 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       21.93        46.98        13.15        44.94        24.36        42.08 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       42.77         3.19         8.09        37.15        38.24        23.51 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        6.21        23.74        13.71        13.38        10.78         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
       27.78        11.90         5.42        12.16        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
        5.16        55.89        15.02        12.13        29.26        17.13 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        70.55        14.96        25.81        31.04 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12        18.64        29.00        25.12 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       22.55        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        87.98         2.04        42.90        28.41 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       51.25        28.44         0.99        20.02        18.84        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
       12.66         5.69         4.60        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        26.27        15.35         4.27         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        5.39         1.25        12.36        10.62        41.33        10.16 
TCGA-91-6835 
        2.60 

  HAX1 MUTATED HAX1 WILD-TYPE 
          9.96           0.07 
  HAX1 MUTATED HAX1 WILD-TYPE 
         97.74         120.79 
  HAX1 MUTATED HAX1 WILD-TYPE 
         13.15          21.47 
[1] "10.0 - 97.7 (13.2)" "0.1 - 120.8 (21.5)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE"   "HAX1 MUTATED" "HAX1 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE"   "HAX1 MUTATED" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE"   "HAX1 MUTATED" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE"   "HAX1 MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE"   "HAX1 MUTATED" "HAX1 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE"   "HAX1 MUTATED" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE"   "HAX1 MUTATED" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE"   "HAX1 MUTATED" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE"   "HAX1 MUTATED" "HAX1 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE"   "HAX1 MUTATED" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE"   "HAX1 MUTATED" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE"   "HAX1 MUTATED" 
[1] "hr=" "2.2"
D134V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  HAX1 MUTATED          1        2         0         0          0          1
  HAX1 WILD-TYPE       36       51        11        23         33          5
                vv
clus             STAGE IV
  HAX1 MUTATED          0
  HAX1 WILD-TYPE        9
D134V3, multiclass
                vv
clus              T1  T2  T3  T4
  HAX1 MUTATED     1   2   0   1
  HAX1 WILD-TYPE  40 107  14   7
D134V4, multiclass
    clus
vv   HAX1 MUTATED HAX1 WILD-TYPE
  T1            1             40
  T2            2            107
  T3            0             14
  T4            1              7
                vv
clus             N0 N1 N2+N3
  HAX1 MUTATED    2  1     0
  HAX1 WILD-TYPE 93 36    35
D134V5, multiclass
       clus
vv      HAX1 MUTATED HAX1 WILD-TYPE
  N0               2             93
  N1               1             36
  N2+N3            0             35
                vv
clus              M0  M1  MX
  HAX1 MUTATED     2   0   1
  HAX1 WILD-TYPE 141   9  17
D134V6, multiclass
    clus
vv   HAX1 MUTATED HAX1 WILD-TYPE
  M0            2            141
  M1            0              9
  MX            1             17
D134V7, binary
                cls
clus              0  1
  HAX1 MUTATED    3  1
  HAX1 WILD-TYPE 90 78
[1] "tbl2"
                cls
clus             [,1] [,2]
  HAX1 MUTATED      3    1
  HAX1 WILD-TYPE   90   78
        clus
vv       HAX1 MUTATED HAX1 WILD-TYPE
  FEMALE            3             90
  MALE              1             78
D134V8, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  HAX1 MUTATED                            0                                 1
  HAX1 WILD-TYPE                          2                                38
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  HAX1 MUTATED                                                    3
  HAX1 WILD-TYPE                                                112
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  HAX1 MUTATED                                            0
  HAX1 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  HAX1 MUTATED                                               0
  HAX1 WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  HAX1 MUTATED                                0
  HAX1 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  HAX1 MUTATED                                    0
  HAX1 WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  HAX1 MUTATED                              0                             0
  HAX1 WILD-TYPE                            2                             4
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  HAX1 MUTATED                                               0
  HAX1 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  HAX1 MUTATED                              0
  HAX1 WILD-TYPE                            2
D134V9, multiclass
D134V10, binary
                cls
clus               0   1
  HAX1 MUTATED     0   4
  HAX1 WILD-TYPE  14 154
[1] "tbl2"
                cls
clus             [,1] [,2]
  HAX1 MUTATED      0    4
  HAX1 WILD-TYPE   14  154
     clus
vv    HAX1 MUTATED HAX1 WILD-TYPE
  NO             0             14
  YES            4            154
D134V11, continuous
D134V12, continuous
                vv
clus              R0  R1  R2  RX
  HAX1 MUTATED     2   0   0   0
  HAX1 WILD-TYPE 113   6   4   9
D134V13, multiclass
[1] "Remove cluster labels:" "HAX1 MUTATED"          
clus
  HAX1 MUTATED HAX1 WILD-TYPE 
             2            132 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-05-4382 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4384     TCGA-05-4389     TCGA-05-4390     TCGA-05-4395 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4397     TCGA-05-4398     TCGA-05-4402     TCGA-05-4403 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4405     TCGA-05-4410     TCGA-05-4415     TCGA-05-4417 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4418     TCGA-05-4420     TCGA-05-4422     TCGA-05-4424 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4425     TCGA-05-4426     TCGA-05-4427     TCGA-05-4430 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-4432     TCGA-05-4433     TCGA-05-4434     TCGA-05-5420 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-5423     TCGA-05-5425     TCGA-05-5428     TCGA-05-5429 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-05-5715     TCGA-35-3615     TCGA-35-4122     TCGA-35-4123 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-35-5375     TCGA-38-4626     TCGA-38-4627     TCGA-38-4628 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-38-4629     TCGA-38-4630     TCGA-38-4631     TCGA-38-4632 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-38-6178     TCGA-44-2655     TCGA-44-2657     TCGA-44-2659 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-6144     TCGA-44-6148 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-44-6775     TCGA-49-4486     TCGA-49-4487     TCGA-49-4488 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-49-4494     TCGA-49-4501     TCGA-49-4505     TCGA-49-4506 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-49-4507     TCGA-49-4510     TCGA-49-4512     TCGA-49-4514 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-49-6742     TCGA-49-6744     TCGA-49-6767     TCGA-50-5051 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-5055     TCGA-50-5066     TCGA-50-5931     TCGA-50-5942 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-6593     TCGA-50-6597     TCGA-55-1592 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-55-1594     TCGA-55-1596     TCGA-55-5899     TCGA-55-6642 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-3770     TCGA-67-3771 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-67-3773     TCGA-67-3774     TCGA-67-4679     TCGA-67-6215 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-73-4677 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-75-5122     TCGA-75-5125     TCGA-75-5126     TCGA-75-5146 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-75-5147     TCGA-75-6203     TCGA-75-6205     TCGA-75-6206 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-75-6207     TCGA-75-6211     TCGA-75-6212     TCGA-80-5611 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 
    TCGA-86-6562     TCGA-91-6828     TCGA-91-6829     TCGA-91-6835 
"HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" "HAX1 WILD-TYPE" 

Clustering(135) Variable = ZNF260 MUTATION ANALYSIS
D135V1, survival
                  sevent
clus2               0  1
  ZNF260 MUTATED    2  1
  ZNF260 WILD-TYPE 97 55
  ZNF260 MUTATED ZNF260 WILD-TYPE 
               3              152 
  ZNF260 MUTATED ZNF260 WILD-TYPE 
               1               55 
$`ZNF260 MUTATED`
TCGA-05-4424 TCGA-44-6774 TCGA-49-4487 
       30.02         5.42        28.11 

$`ZNF260 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4425 
        2.96        14.93         8.98        29.95        12.00        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 
       15.02         4.96        28.96        22.03         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        97.74       120.79 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       14.73        21.93        46.98        13.15        44.94        24.36 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       42.08        42.77         3.19         8.09        37.15        38.24 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
       23.51         6.21        23.74        13.71        12.59        13.38 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 
       10.78         9.93        27.78        11.90        12.16        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4488 TCGA-49-4490 
       32.45        36.49        16.41        76.21        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
        5.16        55.89        15.02        12.13        29.26        17.13 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        70.55        14.96        25.81        31.04 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12        18.64        29.00        25.12 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       22.55        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        87.98         2.04        42.90        28.41 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       51.25        28.44         0.99        20.02        18.84        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
       12.66         5.69         4.60        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        26.27        15.35         4.27         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        5.39         1.25        12.36        10.62        41.33        10.16 
TCGA-91-6835 TCGA-91-6836 
        2.60        13.71 

  ZNF260 MUTATED ZNF260 WILD-TYPE 
            5.42             0.07 
  ZNF260 MUTATED ZNF260 WILD-TYPE 
           30.02           120.79 
  ZNF260 MUTATED ZNF260 WILD-TYPE 
          28.110           20.565 
[1] "5.4 - 30.0 (28.1)"  "0.1 - 120.8 (20.6)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"ZNF260 WILD-TYPE"   "ZNF260 MUTATED" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"ZNF260 WILD-TYPE"   "ZNF260 MUTATED" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
  "ZNF260 MUTATED" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"ZNF260 WILD-TYPE"   "ZNF260 MUTATED" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"ZNF260 WILD-TYPE"   "ZNF260 MUTATED" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
  "ZNF260 MUTATED" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"ZNF260 WILD-TYPE"   "ZNF260 MUTATED" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"ZNF260 WILD-TYPE"   "ZNF260 MUTATED" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
  "ZNF260 MUTATED" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" "ZNF260 WILD-TYPE" 
[1] "hr=" "1.2"
D135V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  ZNF260 MUTATED          1        1         0         1          1          0
  ZNF260 WILD-TYPE       36       52        11        22         32          6
                  vv
clus               STAGE IV
  ZNF260 MUTATED          0
  ZNF260 WILD-TYPE        9
D135V3, multiclass
                  vv
clus                T1  T2  T3  T4
  ZNF260 MUTATED     2   1   1   0
  ZNF260 WILD-TYPE  39 108  13   8
D135V4, multiclass
    clus
vv   ZNF260 MUTATED ZNF260 WILD-TYPE
  T1              2               39
  T2              1              108
  T3              1               13
  T4              0                8
                  vv
clus               N0 N1 N2+N3
  ZNF260 MUTATED    3  0     1
  ZNF260 WILD-TYPE 92 37    34
D135V5, multiclass
       clus
vv      ZNF260 MUTATED ZNF260 WILD-TYPE
  N0                 3               92
  N1                 0               37
  N2+N3              1               34
                  vv
clus                M0  M1  MX
  ZNF260 MUTATED     4   0   0
  ZNF260 WILD-TYPE 139   9  18
D135V6, multiclass
    clus
vv   ZNF260 MUTATED ZNF260 WILD-TYPE
  M0              4              139
  M1              0                9
  MX              0               18
D135V7, binary
                  cls
clus                0  1
  ZNF260 MUTATED    2  2
  ZNF260 WILD-TYPE 91 77
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF260 MUTATED      2    2
  ZNF260 WILD-TYPE   91   77
        clus
vv       ZNF260 MUTATED ZNF260 WILD-TYPE
  FEMALE              2               91
  MALE                2               77
D135V8, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  ZNF260 MUTATED                            0                                 2
  ZNF260 WILD-TYPE                          2                                37
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ZNF260 MUTATED                                                    2
  ZNF260 WILD-TYPE                                                113
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  ZNF260 MUTATED                                            0
  ZNF260 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  ZNF260 MUTATED                                               0
  ZNF260 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  ZNF260 MUTATED                                0
  ZNF260 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  ZNF260 MUTATED                                    0
  ZNF260 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  ZNF260 MUTATED                              0                             0
  ZNF260 WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  ZNF260 MUTATED                                               0
  ZNF260 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  ZNF260 MUTATED                              0
  ZNF260 WILD-TYPE                            2
D135V9, multiclass
D135V10, binary
                  cls
clus                 0   1
  ZNF260 MUTATED     0   4
  ZNF260 WILD-TYPE  14 154
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF260 MUTATED      0    4
  ZNF260 WILD-TYPE   14  154
     clus
vv    ZNF260 MUTATED ZNF260 WILD-TYPE
  NO               0               14
  YES              4              154
D135V11, continuous
D135V12, continuous
                  vv
clus                R0  R1  R2  RX
  ZNF260 MUTATED     1   1   0   1
  ZNF260 WILD-TYPE 114   5   4   8
D135V13, multiclass
    clus
vv   ZNF260 MUTATED ZNF260 WILD-TYPE
  R0              1              114
  R1              1                5
  R2              0                4
  RX              1                8

Clustering(136) Variable = OLAH MUTATION ANALYSIS
D136V1, survival
                sevent
clus2             0  1
  OLAH MUTATED    5  1
  OLAH WILD-TYPE 94 55
  OLAH MUTATED OLAH WILD-TYPE 
             6            149 
  OLAH MUTATED OLAH WILD-TYPE 
             1             55 
$`OLAH MUTATED`
TCGA-05-4390 TCGA-05-4396 TCGA-55-5899 TCGA-64-1678 TCGA-64-5779 TCGA-67-3771 
       37.02         9.96         2.86        39.09        28.41        20.02 

$`OLAH WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4397 
       50.07         3.98        19.92        14.01        45.01        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        4.96        28.96        22.03         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61        14.73 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       21.93        46.98        13.15        44.94        24.36        42.08 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       42.77         3.19         8.09        37.15        38.24        23.51 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21        23.74        13.71        12.59        13.38        10.78 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93        27.78        11.90         5.42        12.16        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46         5.16        55.89        15.02        12.13        29.26 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
       17.13        20.48        71.47        70.55        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       31.04        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12        18.64        29.00 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       25.12        22.55        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
       45.17         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 
       37.02        87.98         2.04        42.90        51.25        28.44 
TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        0.99        18.84        14.04        12.66         5.69         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        26.27 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 
       15.35         4.27         1.32         5.39         1.25        12.36 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       10.62        41.33        10.16         2.60        13.71 

  OLAH MUTATED OLAH WILD-TYPE 
          2.86           0.07 
  OLAH MUTATED OLAH WILD-TYPE 
         39.09         120.79 
  OLAH MUTATED OLAH WILD-TYPE 
        24.215         20.650 
[1] "2.9 - 39.1 (24.2)"  "0.1 - 120.8 (20.6)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"OLAH WILD-TYPE"   "OLAH MUTATED"   "OLAH MUTATED" "OLAH WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"OLAH WILD-TYPE"   "OLAH MUTATED" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE"   "OLAH MUTATED" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
  "OLAH MUTATED" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
  "OLAH MUTATED" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"OLAH WILD-TYPE"   "OLAH MUTATED"   "OLAH MUTATED" "OLAH WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"OLAH WILD-TYPE"   "OLAH MUTATED" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE"   "OLAH MUTATED" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
  "OLAH MUTATED" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
  "OLAH MUTATED" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"OLAH WILD-TYPE"   "OLAH MUTATED"   "OLAH MUTATED" "OLAH WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"OLAH WILD-TYPE"   "OLAH MUTATED" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE"   "OLAH MUTATED" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
  "OLAH MUTATED" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
  "OLAH MUTATED" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
[1] "hr=" "2"  
D136V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  OLAH MUTATED          2        1         1         0          1          2
  OLAH WILD-TYPE       35       52        10        23         32          4
                vv
clus             STAGE IV
  OLAH MUTATED          0
  OLAH WILD-TYPE        9
D136V3, multiclass
                vv
clus              T1  T2  T3  T4
  OLAH MUTATED     2   3   0   2
  OLAH WILD-TYPE  39 106  14   6
D136V4, multiclass
    clus
vv   OLAH MUTATED OLAH WILD-TYPE
  T1            2             39
  T2            3            106
  T3            0             14
  T4            2              6
                vv
clus             N0 N1 N2+N3
  OLAH MUTATED    3  2     2
  OLAH WILD-TYPE 92 35    33
D136V5, multiclass
       clus
vv      OLAH MUTATED OLAH WILD-TYPE
  N0               3             92
  N1               2             35
  N2+N3            2             33
                vv
clus              M0  M1  MX
  OLAH MUTATED     7   0   0
  OLAH WILD-TYPE 136   9  18
D136V6, multiclass
    clus
vv   OLAH MUTATED OLAH WILD-TYPE
  M0            7            136
  M1            0              9
  MX            0             18
D136V7, binary
                cls
clus              0  1
  OLAH MUTATED    3  4
  OLAH WILD-TYPE 90 75
[1] "tbl2"
                cls
clus             [,1] [,2]
  OLAH MUTATED      3    4
  OLAH WILD-TYPE   90   75
        clus
vv       OLAH MUTATED OLAH WILD-TYPE
  FEMALE            3             90
  MALE              4             75
D136V8, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OLAH MUTATED                            1                                 3
  OLAH WILD-TYPE                          1                                36
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OLAH MUTATED                                                    3
  OLAH WILD-TYPE                                                112
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OLAH MUTATED                                            0
  OLAH WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OLAH MUTATED                                               0
  OLAH WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  OLAH MUTATED                                0
  OLAH WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  OLAH MUTATED                                    0
  OLAH WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OLAH MUTATED                              0                             0
  OLAH WILD-TYPE                            2                             4
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OLAH MUTATED                                               0
  OLAH WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  OLAH MUTATED                              0
  OLAH WILD-TYPE                            2
D136V9, multiclass
D136V10, binary
                cls
clus               0   1
  OLAH MUTATED     1   6
  OLAH WILD-TYPE  13 152
[1] "tbl2"
                cls
clus             [,1] [,2]
  OLAH MUTATED      1    6
  OLAH WILD-TYPE   13  152
     clus
vv    OLAH MUTATED OLAH WILD-TYPE
  NO             1             13
  YES            6            152
D136V11, continuous
D136V12, continuous
                vv
clus              R0  R1  R2  RX
  OLAH MUTATED     7   0   0   0
  OLAH WILD-TYPE 108   6   4   9
D136V13, multiclass
    clus
vv   OLAH MUTATED OLAH WILD-TYPE
  R0            7            108
  R1            0              6
  R2            0              4
  RX            0              9

Clustering(137) Variable = C9ORF64 MUTATION ANALYSIS
D137V1, survival
                   sevent
clus2                0  1
  C9ORF64 MUTATED    2  1
  C9ORF64 WILD-TYPE 97 55
  C9ORF64 MUTATED C9ORF64 WILD-TYPE 
                3               152 
  C9ORF64 MUTATED C9ORF64 WILD-TYPE 
                1                55 
$`C9ORF64 MUTATED`
TCGA-44-2656 TCGA-44-2668 TCGA-64-1676 
       46.98         8.09        56.81 

$`C9ORF64 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       21.99        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 
       15.02        15.02         4.96        28.96        22.03         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        97.74 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
      120.79        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       44.61        14.73        21.93        13.15        44.94        24.36 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       42.08        42.77         3.19        37.15        38.24        23.51 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21        23.74        13.71        12.59        13.38        10.78 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93        27.78        11.90         5.42        12.16        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46         5.16        55.89        15.02        12.13        29.26 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
       17.13        20.48        71.47        70.55        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       31.04        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12        18.64        29.00 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       25.12        22.55        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 
       45.17         2.86         0.07        32.61         0.79        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        87.98         2.04        42.90        28.41 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       51.25        28.44         0.99        20.02        18.84        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
       12.66         5.69         4.60        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        26.27        15.35         4.27         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        5.39         1.25        12.36        10.62        41.33        10.16 
TCGA-91-6835 TCGA-91-6836 
        2.60        13.71 

  C9ORF64 MUTATED C9ORF64 WILD-TYPE 
             8.09              0.07 
  C9ORF64 MUTATED C9ORF64 WILD-TYPE 
            56.81            120.79 
  C9ORF64 MUTATED C9ORF64 WILD-TYPE 
           46.980            20.565 
[1] "8.1 - 56.8 (47.0)"  "0.1 - 120.8 (20.6)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"C9ORF64 WILD-TYPE"   "C9ORF64 MUTATED" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
  "C9ORF64 MUTATED" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"C9ORF64 WILD-TYPE"   "C9ORF64 MUTATED" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"C9ORF64 WILD-TYPE"   "C9ORF64 MUTATED" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
  "C9ORF64 MUTATED" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"C9ORF64 WILD-TYPE"   "C9ORF64 MUTATED" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"C9ORF64 WILD-TYPE"   "C9ORF64 MUTATED" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
  "C9ORF64 MUTATED" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"C9ORF64 WILD-TYPE"   "C9ORF64 MUTATED" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
[1] "hr=" "1.9"
D137V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  C9ORF64 MUTATED          1        2         0         0          0          0
  C9ORF64 WILD-TYPE       36       51        11        23         33          6
                   vv
clus                STAGE IV
  C9ORF64 MUTATED          0
  C9ORF64 WILD-TYPE        9
D137V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  C9ORF64 MUTATED     1   2   0   0
  C9ORF64 WILD-TYPE  40 107  14   8
D137V4, multiclass
    clus
vv   C9ORF64 MUTATED C9ORF64 WILD-TYPE
  T1               1                40
  T2               2               107
  T3               0                14
  T4               0                 8
                   vv
clus                N0 N1 N2+N3
  C9ORF64 MUTATED    3  0     0
  C9ORF64 WILD-TYPE 92 37    35
D137V5, multiclass
       clus
vv      C9ORF64 MUTATED C9ORF64 WILD-TYPE
  N0                  3                92
  N1                  0                37
  N2+N3               0                35
                   vv
clus                 M0  M1  MX
  C9ORF64 MUTATED     3   0   0
  C9ORF64 WILD-TYPE 140   9  18
D137V6, multiclass
    clus
vv   C9ORF64 MUTATED C9ORF64 WILD-TYPE
  M0               3               140
  M1               0                 9
  MX               0                18
D137V7, binary
                   cls
clus                 0  1
  C9ORF64 MUTATED    0  3
  C9ORF64 WILD-TYPE 93 76
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C9ORF64 MUTATED      0    3
  C9ORF64 WILD-TYPE   93   76
        clus
vv       C9ORF64 MUTATED C9ORF64 WILD-TYPE
  FEMALE               0                93
  MALE                 3                76
D137V8, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  C9ORF64 MUTATED                            0
  C9ORF64 WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  C9ORF64 MUTATED                                   0
  C9ORF64 WILD-TYPE                                39
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  C9ORF64 MUTATED                                                    3
  C9ORF64 WILD-TYPE                                                112
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  C9ORF64 MUTATED                                            0
  C9ORF64 WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  C9ORF64 MUTATED                                               0
  C9ORF64 WILD-TYPE                                             2
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  C9ORF64 MUTATED                                0
  C9ORF64 WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  C9ORF64 MUTATED                                    0
  C9ORF64 WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  C9ORF64 MUTATED                              0                             0
  C9ORF64 WILD-TYPE                            2                             4
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  C9ORF64 MUTATED                                               0
  C9ORF64 WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  C9ORF64 MUTATED                              0
  C9ORF64 WILD-TYPE                            2
D137V9, multiclass
D137V10, binary
                   cls
clus                  0   1
  C9ORF64 MUTATED     0   3
  C9ORF64 WILD-TYPE  14 155
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C9ORF64 MUTATED      0    3
  C9ORF64 WILD-TYPE   14  155
     clus
vv    C9ORF64 MUTATED C9ORF64 WILD-TYPE
  NO                0                14
  YES               3               155
D137V11, continuous
D137V12, continuous
[1] "Remove cluster labels:" "C9ORF64 MUTATED"       
clus
  C9ORF64 MUTATED C9ORF64 WILD-TYPE 
                2                66 
       TCGA-05-4384        TCGA-05-4390        TCGA-05-4396        TCGA-05-4405 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4410        TCGA-05-4415        TCGA-05-4417        TCGA-05-4424 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4433        TCGA-05-5420        TCGA-05-5423 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-5425        TCGA-05-5428        TCGA-35-4122        TCGA-35-4123 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-35-5375        TCGA-38-4625        TCGA-38-4626        TCGA-44-2655 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2662        TCGA-44-2666 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-4112 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6147 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4505        TCGA-55-1592        TCGA-55-1594 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6642 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-64-5781        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6836 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
                   vv
clus                 R0  R1  R2  RX
  C9ORF64 MUTATED     2   0   0   0
  C9ORF64 WILD-TYPE 113   6   4   9
D137V13, multiclass
[1] "Remove cluster labels:" "C9ORF64 MUTATED"       
clus
  C9ORF64 MUTATED C9ORF64 WILD-TYPE 
                2               132 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-05-4382 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4384        TCGA-05-4389        TCGA-05-4390        TCGA-05-4395 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4396        TCGA-05-4397        TCGA-05-4398        TCGA-05-4402 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4403        TCGA-05-4405        TCGA-05-4410        TCGA-05-4415 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4417        TCGA-05-4418        TCGA-05-4420        TCGA-05-4422 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4424        TCGA-05-4425        TCGA-05-4426        TCGA-05-4427 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4430        TCGA-05-4432        TCGA-05-4433        TCGA-05-4434 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-5420        TCGA-05-5423        TCGA-05-5425        TCGA-05-5428 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-3396        TCGA-44-3398 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-6144 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6775        TCGA-49-4486        TCGA-49-4487 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6744        TCGA-49-6767 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5931 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-50-5942        TCGA-50-5944        TCGA-50-6593        TCGA-50-6597 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1596        TCGA-55-5899 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-55-6642        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-4679        TCGA-67-6215 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-75-5122        TCGA-75-5125        TCGA-75-5126        TCGA-75-5146 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-75-5147        TCGA-75-6203        TCGA-75-6205        TCGA-75-6206 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-75-6207        TCGA-75-6211        TCGA-75-6212        TCGA-80-5611 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-86-6562        TCGA-91-6828        TCGA-91-6829        TCGA-91-6835 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 

Clustering(138) Variable = ATM MUTATION ANALYSIS
D138V1, survival
               sevent
clus2            0  1
  ATM MUTATED    8  6
  ATM WILD-TYPE 91 50
  ATM MUTATED ATM WILD-TYPE 
           14           141 
  ATM MUTATED ATM WILD-TYPE 
            6            50 
$`ATM MUTATED`
TCGA-05-4382 TCGA-05-4390 TCGA-05-4396 TCGA-05-4417 TCGA-49-4486 TCGA-49-4507 
       19.92        37.02         9.96        14.93        76.21         8.81 
TCGA-49-4510 TCGA-55-1595 TCGA-55-6642 TCGA-64-5774 TCGA-64-5775 TCGA-67-6215 
       29.46        48.62        32.61        87.98         2.04         5.69 
TCGA-73-4659 TCGA-91-6836 
       23.38        13.71 

$`ATM WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4397 TCGA-05-4398 
       50.07         3.98        14.01        45.01        24.03        47.05 
TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 TCGA-05-4420 
        8.02        19.00        20.05         2.96         8.98        29.95 
TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
       12.00        30.02        21.99        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02        15.02         4.96        28.96 
TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
       22.03         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        97.74       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61        14.73        21.93        46.98 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        44.94        24.36        42.08        42.77         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        37.15        38.24        23.51         6.21        23.74 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       13.71        12.59        13.38        10.78         9.93        27.78 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
       11.90         5.42        12.16        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       16.41        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
       14.07        32.84         5.16        55.89        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       29.26        17.13        20.48        71.47        70.55        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81        31.04        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12        18.64 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
       29.00        25.12        22.55        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
       45.17         2.86         0.07         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       39.09        37.02        42.90        28.41        51.25        28.44 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6216 
        0.99        20.02        18.84        14.04        12.66         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
       13.87         2.01        52.57        29.95        26.27        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 
        4.27         1.32         5.39         1.25        12.36        10.62 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
       41.33        10.16         2.60 

  ATM MUTATED ATM WILD-TYPE 
         2.04          0.07 
  ATM MUTATED ATM WILD-TYPE 
        87.98        120.79 
  ATM MUTATED ATM WILD-TYPE 
        21.65         20.65 
[1] "2.0 - 88.0 (21.6)"  "0.1 - 120.8 (20.6)"
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
  "ATM MUTATED"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428    TCGA-05-5429 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
  "ATM MUTATED"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-86-6562 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-91-6828    TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
  "ATM MUTATED"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428    TCGA-05-5429 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
  "ATM MUTATED"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-86-6562 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-91-6828    TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
  "ATM MUTATED"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428    TCGA-05-5429 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
  "ATM MUTATED"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-86-6562 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-91-6828    TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" 
[1] "hr=" "1.1"
D138V2, continuous
               vv
clus            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  ATM MUTATED          2        7         0         1          3          1
  ATM WILD-TYPE       35       46        11        22         30          5
               vv
clus            STAGE IV
  ATM MUTATED          1
  ATM WILD-TYPE        8
D138V3, multiclass
               vv
clus            T1 T2 T3 T4
  ATM MUTATED    2 10  1  2
  ATM WILD-TYPE 39 99 13  6
D138V4, multiclass
    clus
vv   ATM MUTATED ATM WILD-TYPE
  T1           2            39
  T2          10            99
  T3           1            13
  T4           2             6
               vv
clus            N0 N1 N2+N3
  ATM MUTATED   10  3     2
  ATM WILD-TYPE 85 34    33
D138V5, multiclass
       clus
vv      ATM MUTATED ATM WILD-TYPE
  N0             10            85
  N1              3            34
  N2+N3           2            33
               vv
clus             M0  M1  MX
  ATM MUTATED    12   1   2
  ATM WILD-TYPE 131   8  16
D138V6, multiclass
    clus
vv   ATM MUTATED ATM WILD-TYPE
  M0          12           131
  M1           1             8
  MX           2            16
D138V7, binary
               cls
clus             0  1
  ATM MUTATED    7  8
  ATM WILD-TYPE 86 71
[1] "tbl2"
               cls
clus            [,1] [,2]
  ATM MUTATED      7    8
  ATM WILD-TYPE   86   71
        clus
vv       ATM MUTATED ATM WILD-TYPE
  FEMALE           7            86
  MALE             8            71
D138V8, continuous
[1] "Remove cluster labels:" "ATM MUTATED"           
clus
  ATM MUTATED ATM WILD-TYPE 
            1            11 
   TCGA-35-4122    TCGA-35-4123    TCGA-35-5375    TCGA-64-1677    TCGA-64-5778 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-71-6725    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668    TCGA-73-4676 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-75-5122 
"ATM WILD-TYPE" 
               vv
clus            LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  ATM MUTATED                            0                                 4
  ATM WILD-TYPE                          2                                35
               vv
clus            LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ATM MUTATED                                                   10
  ATM WILD-TYPE                                                105
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  ATM MUTATED                                            0
  ATM WILD-TYPE                                          1
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  ATM MUTATED                                               0
  ATM WILD-TYPE                                             2
               vv
clus            LUNG CLEAR CELL ADENOCARCINOMA
  ATM MUTATED                                1
  ATM WILD-TYPE                              1
               vv
clus            LUNG MICROPAPILLARY ADENOCARCINOMA LUNG MUCINOUS ADENOCARCINOMA
  ATM MUTATED                                    0                            0
  ATM WILD-TYPE                                  2                            2
               vv
clus            LUNG PAPILLARY ADENOCARCINOMA
  ATM MUTATED                               0
  ATM WILD-TYPE                             4
               vv
clus            LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  ATM MUTATED                                               0
  ATM WILD-TYPE                                             1
               vv
clus            MUCINOUS (COLLOID) CARCINOMA
  ATM MUTATED                              0
  ATM WILD-TYPE                            2
D138V9, multiclass
D138V10, binary
               cls
clus              0   1
  ATM MUTATED     1  14
  ATM WILD-TYPE  13 144
[1] "tbl2"
               cls
clus            [,1] [,2]
  ATM MUTATED      1   14
  ATM WILD-TYPE   13  144
     clus
vv    ATM MUTATED ATM WILD-TYPE
  NO            1            13
  YES          14           144
D138V11, continuous
D138V12, continuous
               vv
clus             R0  R1  R2  RX
  ATM MUTATED    12   0   0   1
  ATM WILD-TYPE 103   6   4   8
D138V13, multiclass
    clus
vv   ATM MUTATED ATM WILD-TYPE
  R0          12           103
  R1           0             6
  R2           0             4
  RX           1             8

Clustering(139) Variable = POLR3B MUTATION ANALYSIS
D139V1, survival
                  sevent
clus2               0  1
  POLR3B MUTATED    8  3
  POLR3B WILD-TYPE 91 53
  POLR3B MUTATED POLR3B WILD-TYPE 
              11              144 
  POLR3B MUTATED POLR3B WILD-TYPE 
               3               53 
$`POLR3B MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4432 TCGA-44-2655 TCGA-50-6594 TCGA-64-1677 
       19.92         9.96        25.02        21.93        12.16        20.65 
TCGA-64-5781 TCGA-67-3771 TCGA-73-4666 TCGA-91-6828 TCGA-91-6835 
       51.25        20.02        26.27        10.62         2.60 

$`POLR3B WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4397 
       50.07         3.98        14.01        45.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       26.01        25.02        24.00        15.02        15.02         4.96 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
       28.96        22.03         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        97.74       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2656 
       28.37        35.28        11.64        44.61        14.73        46.98 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        44.94        24.36        42.08        42.77         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        37.15        38.24        23.51         6.21        23.74 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       13.71        12.59        13.38        10.78         9.93        27.78 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
       11.90         5.42        12.16        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46         5.16 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       55.89        15.02        12.13        29.26        17.13        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        70.55        14.96        25.81        31.04        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12        18.64        29.00        25.12        22.55 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 
       42.31         3.88        25.51        11.05         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
       32.61         0.79        56.81        39.09        37.02        87.98 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 
        2.04        42.90        28.41        28.44         0.99        18.84 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
       14.04        12.66         5.69         4.60        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       52.57        23.38        29.95        15.35         4.27         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6829 TCGA-91-6831 TCGA-91-6836 
        5.39         1.25        12.36        41.33        10.16        13.71 

  POLR3B MUTATED POLR3B WILD-TYPE 
            2.60             0.07 
  POLR3B MUTATED POLR3B WILD-TYPE 
           51.25           120.79 
  POLR3B MUTATED POLR3B WILD-TYPE 
           20.02            21.73 
[1] "2.6 - 51.2 (20.0)"  "0.1 - 120.8 (21.7)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE"   "POLR3B MUTATED" "POLR3B WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE"   "POLR3B MUTATED" "POLR3B WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE"   "POLR3B MUTATED" "POLR3B WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
  "POLR3B MUTATED" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE"   "POLR3B MUTATED" "POLR3B WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE"   "POLR3B MUTATED" "POLR3B WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"POLR3B WILD-TYPE"   "POLR3B MUTATED" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
  "POLR3B MUTATED" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE"   "POLR3B MUTATED" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE"   "POLR3B MUTATED" "POLR3B WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"POLR3B WILD-TYPE"   "POLR3B MUTATED" "POLR3B WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE"   "POLR3B MUTATED" "POLR3B WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE"   "POLR3B MUTATED" "POLR3B WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE"   "POLR3B MUTATED" "POLR3B WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
  "POLR3B MUTATED" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE"   "POLR3B MUTATED" "POLR3B WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE"   "POLR3B MUTATED" "POLR3B WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"POLR3B WILD-TYPE"   "POLR3B MUTATED" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
  "POLR3B MUTATED" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE"   "POLR3B MUTATED" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE"   "POLR3B MUTATED" "POLR3B WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"POLR3B WILD-TYPE"   "POLR3B MUTATED" "POLR3B WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE"   "POLR3B MUTATED" "POLR3B WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE"   "POLR3B MUTATED" "POLR3B WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE"   "POLR3B MUTATED" "POLR3B WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
  "POLR3B MUTATED" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE"   "POLR3B MUTATED" "POLR3B WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE"   "POLR3B MUTATED" "POLR3B WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"POLR3B WILD-TYPE"   "POLR3B MUTATED" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
  "POLR3B MUTATED" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE"   "POLR3B MUTATED" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE"   "POLR3B MUTATED" "POLR3B WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"POLR3B WILD-TYPE"   "POLR3B MUTATED" "POLR3B WILD-TYPE" 
[1] "hr=" "1"  
D139V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  POLR3B MUTATED          4        2         0         1          2          1
  POLR3B WILD-TYPE       33       51        11        22         31          5
                  vv
clus               STAGE IV
  POLR3B MUTATED          1
  POLR3B WILD-TYPE        8
D139V3, multiclass
                  vv
clus                T1  T2  T3  T4
  POLR3B MUTATED     5   4   1   1
  POLR3B WILD-TYPE  36 105  13   7
D139V4, multiclass
    clus
vv   POLR3B MUTATED POLR3B WILD-TYPE
  T1              5               36
  T2              4              105
  T3              1               13
  T4              1                7
                  vv
clus               N0 N1 N2+N3
  POLR3B MUTATED    7  2     2
  POLR3B WILD-TYPE 88 35    33
D139V5, multiclass
       clus
vv      POLR3B MUTATED POLR3B WILD-TYPE
  N0                 7               88
  N1                 2               35
  N2+N3              2               33
                  vv
clus                M0  M1  MX
  POLR3B MUTATED    10   1   0
  POLR3B WILD-TYPE 133   8  18
D139V6, multiclass
    clus
vv   POLR3B MUTATED POLR3B WILD-TYPE
  M0             10              133
  M1              1                8
  MX              0               18
D139V7, binary
                  cls
clus                0  1
  POLR3B MUTATED    7  4
  POLR3B WILD-TYPE 86 75
[1] "tbl2"
                  cls
clus               [,1] [,2]
  POLR3B MUTATED      7    4
  POLR3B WILD-TYPE   86   75
        clus
vv       POLR3B MUTATED POLR3B WILD-TYPE
  FEMALE              7               86
  MALE                4               75
D139V8, continuous
[1] "Remove cluster labels:" "POLR3B MUTATED"        
clus
  POLR3B MUTATED POLR3B WILD-TYPE 
               2               10 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-5778 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4668 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
      TCGA-73-4676       TCGA-75-5122 
"POLR3B WILD-TYPE" "POLR3B WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  POLR3B MUTATED                            0                                 4
  POLR3B WILD-TYPE                          2                                35
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  POLR3B MUTATED                                                    7
  POLR3B WILD-TYPE                                                108
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  POLR3B MUTATED                                            0
  POLR3B WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  POLR3B MUTATED                                               0
  POLR3B WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  POLR3B MUTATED                                0
  POLR3B WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  POLR3B MUTATED                                    0
  POLR3B WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  POLR3B MUTATED                              0                             0
  POLR3B WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  POLR3B MUTATED                                               0
  POLR3B WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  POLR3B MUTATED                              0
  POLR3B WILD-TYPE                            2
D139V9, multiclass
D139V10, binary
                  cls
clus                 0   1
  POLR3B MUTATED     1  10
  POLR3B WILD-TYPE  13 148
[1] "tbl2"
                  cls
clus               [,1] [,2]
  POLR3B MUTATED      1   10
  POLR3B WILD-TYPE   13  148
     clus
vv    POLR3B MUTATED POLR3B WILD-TYPE
  NO               1               13
  YES             10              148
D139V11, continuous
D139V12, continuous
                  vv
clus                R0  R1  R2  RX
  POLR3B MUTATED    10   0   0   0
  POLR3B WILD-TYPE 105   6   4   9
D139V13, multiclass
    clus
vv   POLR3B MUTATED POLR3B WILD-TYPE
  R0             10              105
  R1              0                6
  R2              0                4
  RX              0                9

Clustering(140) Variable = C1ORF49 MUTATION ANALYSIS
D140V1, survival
                   sevent
clus2                0  1
  C1ORF49 MUTATED    5  1
  C1ORF49 WILD-TYPE 94 55
  C1ORF49 MUTATED C1ORF49 WILD-TYPE 
                6               149 
  C1ORF49 MUTATED C1ORF49 WILD-TYPE 
                1                55 
$`C1ORF49 MUTATED`
TCGA-05-4424 TCGA-35-5375 TCGA-55-6712 TCGA-64-1677 TCGA-64-5778 TCGA-91-6836 
       30.02         8.68         0.79        20.65        42.90        13.71 

$`C1ORF49 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4425 
        2.96        14.93         8.98        29.95        12.00        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 
       15.02         4.96        28.96        22.03         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         5.95        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61        14.73 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       21.93        46.98        13.15        44.94        24.36        42.08 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       42.77         3.19         8.09        37.15        38.24        23.51 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21        23.74        13.71        12.59        13.38        10.78 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93        27.78        11.90         5.42        12.16        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46         5.16        55.89        15.02        12.13        29.26 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
       17.13        20.48        71.47        70.55        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       31.04        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12        18.64        29.00 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       25.12        22.55        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-64-1676 TCGA-64-1678 
       45.17         2.86         0.07        32.61        56.81        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       37.02        87.98         2.04        28.41        51.25        28.44 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99        20.02        18.84        14.04        12.66         5.69 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        4.60        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       26.27        15.35         4.27         1.32         5.39         1.25 
TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
       12.36        10.62        41.33        10.16         2.60 

  C1ORF49 MUTATED C1ORF49 WILD-TYPE 
             0.79              0.07 
  C1ORF49 MUTATED C1ORF49 WILD-TYPE 
            42.90            120.79 
  C1ORF49 MUTATED C1ORF49 WILD-TYPE 
            17.18             21.47 
[1] "0.8 - 42.9 (17.2)"  "0.1 - 120.8 (21.5)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
  "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
  "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
  "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" "C1ORF49 WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE"   "C1ORF49 MUTATED" 
[1] "hr=" "1.6"
D140V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  C1ORF49 MUTATED          0        2         1         1          2          0
  C1ORF49 WILD-TYPE       37       51        10        22         31          6
                   vv
clus                STAGE IV
  C1ORF49 MUTATED          0
  C1ORF49 WILD-TYPE        9
D140V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  C1ORF49 MUTATED     0   5   1   0
  C1ORF49 WILD-TYPE  41 104  13   8
D140V4, multiclass
    clus
vv   C1ORF49 MUTATED C1ORF49 WILD-TYPE
  T1               0                41
  T2               5               104
  T3               1                13
  T4               0                 8
                   vv
clus                N0 N1 N2+N3
  C1ORF49 MUTATED    3  1     2
  C1ORF49 WILD-TYPE 92 36    33
D140V5, multiclass
       clus
vv      C1ORF49 MUTATED C1ORF49 WILD-TYPE
  N0                  3                92
  N1                  1                36
  N2+N3               2                33
                   vv
clus                 M0  M1  MX
  C1ORF49 MUTATED     4   0   2
  C1ORF49 WILD-TYPE 139   9  16
D140V6, multiclass
    clus
vv   C1ORF49 MUTATED C1ORF49 WILD-TYPE
  M0               4               139
  M1               0                 9
  MX               2                16
D140V7, binary
                   cls
clus                 0  1
  C1ORF49 MUTATED    2  4
  C1ORF49 WILD-TYPE 91 75
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C1ORF49 MUTATED      2    4
  C1ORF49 WILD-TYPE   91   75
        clus
vv       C1ORF49 MUTATED C1ORF49 WILD-TYPE
  FEMALE               2                91
  MALE                 4                75
D140V8, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  C1ORF49 MUTATED                            0
  C1ORF49 WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  C1ORF49 MUTATED                                   1
  C1ORF49 WILD-TYPE                                38
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  C1ORF49 MUTATED                                                    4
  C1ORF49 WILD-TYPE                                                111
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  C1ORF49 MUTATED                                            0
  C1ORF49 WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  C1ORF49 MUTATED                                               1
  C1ORF49 WILD-TYPE                                             1
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  C1ORF49 MUTATED                                0
  C1ORF49 WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  C1ORF49 MUTATED                                    0
  C1ORF49 WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  C1ORF49 MUTATED                              0                             0
  C1ORF49 WILD-TYPE                            2                             4
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  C1ORF49 MUTATED                                               0
  C1ORF49 WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  C1ORF49 MUTATED                              0
  C1ORF49 WILD-TYPE                            2
D140V9, multiclass
D140V10, binary
                   cls
clus                  0   1
  C1ORF49 MUTATED     0   6
  C1ORF49 WILD-TYPE  14 152
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C1ORF49 MUTATED      0    6
  C1ORF49 WILD-TYPE   14  152
     clus
vv    C1ORF49 MUTATED C1ORF49 WILD-TYPE
  NO                0                14
  YES               6               152
D140V11, continuous
D140V12, continuous
                   vv
clus                 R0  R1  R2  RX
  C1ORF49 MUTATED     3   1   0   0
  C1ORF49 WILD-TYPE 112   5   4   9
D140V13, multiclass
    clus
vv   C1ORF49 MUTATED C1ORF49 WILD-TYPE
  R0               3               112
  R1               1                 5
  R2               0                 4
  RX               0                 9

Clustering(141) Variable = MFSD8 MUTATION ANALYSIS
D141V1, survival
                 sevent
clus2              0  1
  MFSD8 MUTATED    3  2
  MFSD8 WILD-TYPE 96 54
  MFSD8 MUTATED MFSD8 WILD-TYPE 
              5             150 
  MFSD8 MUTATED MFSD8 WILD-TYPE 
              2              54 
$`MFSD8 MUTATED`
TCGA-05-4396 TCGA-44-2662 TCGA-55-1592 TCGA-64-1678 TCGA-67-3771 
        9.96        42.08        23.05        39.09        20.02 

$`MFSD8 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 
       15.02         4.96        28.96        22.03         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        97.74       120.79 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       14.73        21.93        46.98        13.15        44.94        24.36 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       42.77         3.19         8.09        37.15        38.24        23.51 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21        23.74        13.71        12.59        13.38        10.78 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93        27.78        11.90         5.42        12.16        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46         5.16        55.89        15.02        12.13        29.26 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
       17.13        20.48        71.47        70.55        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       31.04        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12        18.64        29.00 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       25.12        22.55        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       12.16         6.21        33.37        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        87.98         2.04        42.90        28.41        51.25 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
       28.44         0.99        18.84        14.04        12.66         5.69 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        4.60        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       26.27        15.35         4.27         1.32         5.39         1.25 
TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       12.36        10.62        41.33        10.16         2.60        13.71 

  MFSD8 MUTATED MFSD8 WILD-TYPE 
           9.96            0.07 
  MFSD8 MUTATED MFSD8 WILD-TYPE 
          42.08          120.79 
  MFSD8 MUTATED MFSD8 WILD-TYPE 
         23.050          20.565 
[1] "10.0 - 42.1 (23.1)" "0.1 - 120.8 (20.6)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE"   "MFSD8 MUTATED" "MFSD8 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"MFSD8 WILD-TYPE"   "MFSD8 MUTATED" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"MFSD8 WILD-TYPE"   "MFSD8 MUTATED" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE"   "MFSD8 MUTATED" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "MFSD8 MUTATED" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE"   "MFSD8 MUTATED" "MFSD8 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"MFSD8 WILD-TYPE"   "MFSD8 MUTATED" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"MFSD8 WILD-TYPE"   "MFSD8 MUTATED" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE"   "MFSD8 MUTATED" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "MFSD8 MUTATED" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE"   "MFSD8 MUTATED" "MFSD8 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"MFSD8 WILD-TYPE"   "MFSD8 MUTATED" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"MFSD8 WILD-TYPE"   "MFSD8 MUTATED" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE"   "MFSD8 MUTATED" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "MFSD8 MUTATED" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
[1] "hr=" "1.1"
D141V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  MFSD8 MUTATED          2        1         1         0          0          1
  MFSD8 WILD-TYPE       35       52        10        23         33          5
                 vv
clus              STAGE IV
  MFSD8 MUTATED          0
  MFSD8 WILD-TYPE        9
D141V3, multiclass
                 vv
clus               T1  T2  T3  T4
  MFSD8 MUTATED     1   3   0   1
  MFSD8 WILD-TYPE  40 106  14   7
D141V4, multiclass
    clus
vv   MFSD8 MUTATED MFSD8 WILD-TYPE
  T1             1              40
  T2             3             106
  T3             0              14
  T4             1               7
                 vv
clus              N0 N1 N2+N3
  MFSD8 MUTATED    4  1     0
  MFSD8 WILD-TYPE 91 36    35
D141V5, multiclass
       clus
vv      MFSD8 MUTATED MFSD8 WILD-TYPE
  N0                4              91
  N1                1              36
  N2+N3             0              35
                 vv
clus               M0  M1  MX
  MFSD8 MUTATED     5   0   0
  MFSD8 WILD-TYPE 138   9  18
D141V6, multiclass
    clus
vv   MFSD8 MUTATED MFSD8 WILD-TYPE
  M0             5             138
  M1             0               9
  MX             0              18
D141V7, binary
                 cls
clus               0  1
  MFSD8 MUTATED    2  3
  MFSD8 WILD-TYPE 91 76
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MFSD8 MUTATED      2    3
  MFSD8 WILD-TYPE   91   76
        clus
vv       MFSD8 MUTATED MFSD8 WILD-TYPE
  FEMALE             2              91
  MALE               3              76
D141V8, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  MFSD8 MUTATED                            0                                 1
  MFSD8 WILD-TYPE                          2                                38
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  MFSD8 MUTATED                                                    4
  MFSD8 WILD-TYPE                                                111
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  MFSD8 MUTATED                                            0
  MFSD8 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  MFSD8 MUTATED                                               0
  MFSD8 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  MFSD8 MUTATED                                0
  MFSD8 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  MFSD8 MUTATED                                    0
  MFSD8 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  MFSD8 MUTATED                              0                             0
  MFSD8 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  MFSD8 MUTATED                                               0
  MFSD8 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  MFSD8 MUTATED                              0
  MFSD8 WILD-TYPE                            2
D141V9, multiclass
D141V10, binary
                 cls
clus                0   1
  MFSD8 MUTATED     0   5
  MFSD8 WILD-TYPE  14 153
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MFSD8 MUTATED      0    5
  MFSD8 WILD-TYPE   14  153
     clus
vv    MFSD8 MUTATED MFSD8 WILD-TYPE
  NO              0              14
  YES             5             153
D141V11, continuous
D141V12, continuous
                 vv
clus               R0  R1  R2  RX
  MFSD8 MUTATED     5   0   0   0
  MFSD8 WILD-TYPE 110   6   4   9
D141V13, multiclass
    clus
vv   MFSD8 MUTATED MFSD8 WILD-TYPE
  R0             5             110
  R1             0               6
  R2             0               4
  RX             0               9

Clustering(142) Variable = OR4A15 MUTATION ANALYSIS
D142V1, survival
                  sevent
clus2               0  1
  OR4A15 MUTATED    7  7
  OR4A15 WILD-TYPE 92 49
  OR4A15 MUTATED OR4A15 WILD-TYPE 
              14              141 
  OR4A15 MUTATED OR4A15 WILD-TYPE 
               7               49 
$`OR4A15 MUTATED`
TCGA-05-4389 TCGA-05-4398 TCGA-05-4427 TCGA-38-4625 TCGA-38-4631 TCGA-38-4632 
       45.01        47.05        26.01        97.74        11.64        44.61 
TCGA-44-2656 TCGA-49-4505 TCGA-50-5045 TCGA-55-5899 TCGA-64-1676 TCGA-64-5775 
       46.98        14.07        71.47         2.86        56.81         2.04 
TCGA-73-4659 TCGA-91-6829 
       23.38        41.33 

$`OR4A15 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       50.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02        15.02         4.96 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
       28.96        22.03         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        5.95         8.68       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       35.28        14.73        21.93        13.15        44.94        24.36 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       42.08        42.77         3.19         8.09        37.15        38.24 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
       23.51         6.21        23.74        13.71        12.59        13.38 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
       10.78         9.93        27.78        11.90         5.42        12.16 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 
       28.57        12.66        35.54        46.72        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46         5.16        55.89        15.02        12.13        29.26 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       17.13        20.48        70.55        14.96        25.81        31.04 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12        18.64        29.00        25.12 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       22.55        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
        0.07        32.61         0.79        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
       87.98        42.90        28.41        51.25        28.44         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       20.02        18.84        14.04        12.66         5.69         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
       13.87         2.01        52.57        29.95        26.27        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 
        4.27         1.32         5.39         1.25        12.36        10.62 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       10.16         2.60        13.71 

  OR4A15 MUTATED OR4A15 WILD-TYPE 
            2.04             0.07 
  OR4A15 MUTATED OR4A15 WILD-TYPE 
           97.74           120.79 
  OR4A15 MUTATED OR4A15 WILD-TYPE 
           42.97            20.02 
[1] "2.0 - 97.7 (43.0)"  "0.1 - 120.8 (20.0)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE"   "OR4A15 MUTATED" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"OR4A15 WILD-TYPE"   "OR4A15 MUTATED"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE"   "OR4A15 MUTATED" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE"   "OR4A15 MUTATED" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"OR4A15 WILD-TYPE"   "OR4A15 MUTATED"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE"   "OR4A15 MUTATED" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE"   "OR4A15 MUTATED" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"OR4A15 WILD-TYPE"   "OR4A15 MUTATED"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE"   "OR4A15 MUTATED" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
[1] "hr=" "1.2"
D142V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  OR4A15 MUTATED          4        4         0         2          2          1
  OR4A15 WILD-TYPE       33       49        11        21         31          5
                  vv
clus               STAGE IV
  OR4A15 MUTATED          1
  OR4A15 WILD-TYPE        8
D142V3, multiclass
                  vv
clus                T1  T2  T3  T4
  OR4A15 MUTATED     3   9   0   2
  OR4A15 WILD-TYPE  38 100  14   6
D142V4, multiclass
    clus
vv   OR4A15 MUTATED OR4A15 WILD-TYPE
  T1              3               38
  T2              9              100
  T3              0               14
  T4              2                6
                  vv
clus               N0 N1 N2+N3
  OR4A15 MUTATED    7  5     2
  OR4A15 WILD-TYPE 88 32    33
D142V5, multiclass
       clus
vv      OR4A15 MUTATED OR4A15 WILD-TYPE
  N0                 7               88
  N1                 5               32
  N2+N3              2               33
                  vv
clus                M0  M1  MX
  OR4A15 MUTATED    12   1   1
  OR4A15 WILD-TYPE 131   8  17
D142V6, multiclass
    clus
vv   OR4A15 MUTATED OR4A15 WILD-TYPE
  M0             12              131
  M1              1                8
  MX              1               17
D142V7, binary
                  cls
clus                0  1
  OR4A15 MUTATED    6  8
  OR4A15 WILD-TYPE 87 71
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4A15 MUTATED      6    8
  OR4A15 WILD-TYPE   87   71
        clus
vv       OR4A15 MUTATED OR4A15 WILD-TYPE
  FEMALE              6               87
  MALE                8               71
D142V8, continuous
[1] "Remove cluster labels:" "OR4A15 MUTATED"        
clus
  OR4A15 MUTATED OR4A15 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-64-5778       TCGA-71-6725       TCGA-73-4662       TCGA-73-4666 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR4A15 MUTATED                            0                                 3
  OR4A15 WILD-TYPE                          2                                36
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR4A15 MUTATED                                                   10
  OR4A15 WILD-TYPE                                                105
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR4A15 MUTATED                                            0
  OR4A15 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR4A15 MUTATED                                               1
  OR4A15 WILD-TYPE                                             1
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  OR4A15 MUTATED                                0
  OR4A15 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  OR4A15 MUTATED                                    0
  OR4A15 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR4A15 MUTATED                              0                             0
  OR4A15 WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR4A15 MUTATED                                               0
  OR4A15 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  OR4A15 MUTATED                              0
  OR4A15 WILD-TYPE                            2
D142V9, multiclass
D142V10, binary
                  cls
clus                 0   1
  OR4A15 MUTATED     1  13
  OR4A15 WILD-TYPE  13 145
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4A15 MUTATED      1   13
  OR4A15 WILD-TYPE   13  145
     clus
vv    OR4A15 MUTATED OR4A15 WILD-TYPE
  NO               1               13
  YES             13              145
D142V11, continuous
D142V12, continuous
                  vv
clus                R0  R1  R2  RX
  OR4A15 MUTATED    12   0   0   0
  OR4A15 WILD-TYPE 103   6   4   9
D142V13, multiclass
    clus
vv   OR4A15 MUTATED OR4A15 WILD-TYPE
  R0             12              103
  R1              0                6
  R2              0                4
  RX              0                9

Clustering(143) Variable = LELP1 MUTATION ANALYSIS
D143V1, survival
                 sevent
clus2              0  1
  LELP1 MUTATED    1  1
  LELP1 WILD-TYPE 98 55
  LELP1 MUTATED LELP1 WILD-TYPE 
              2             153 
  LELP1 MUTATED LELP1 WILD-TYPE 
              1              55 
$`LELP1 MUTATED`
TCGA-44-2656 TCGA-64-5775 
       46.98         2.04 

$`LELP1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       21.99        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 
       15.02        15.02         4.96        28.96        22.03         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        97.74 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
      120.79        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       44.61        14.73        21.93        13.15        44.94        24.36 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       42.08        42.77         3.19         8.09        37.15        38.24 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
       23.51         6.21        23.74        13.71        12.59        13.38 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
       10.78         9.93        27.78        11.90         5.42        12.16 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46         5.16        55.89        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       29.26        17.13        20.48        71.47        70.55        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81        31.04        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12        18.64 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
       29.00        25.12        22.55        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5778 
       56.81        20.65        39.09        37.02        87.98        42.90 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       28.41        51.25        28.44         0.99        20.02        18.84 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
       14.04        12.66         5.69         4.60        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        26.27        15.35         4.27 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 
        1.32         5.39         1.25        12.36        10.62        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       10.16         2.60        13.71 

  LELP1 MUTATED LELP1 WILD-TYPE 
           2.04            0.07 
  LELP1 MUTATED LELP1 WILD-TYPE 
          46.98          120.79 
  LELP1 MUTATED LELP1 WILD-TYPE 
          24.51           20.65 
[1] "2.0 - 47.0 (24.5)"  "0.1 - 120.8 (20.6)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"LELP1 WILD-TYPE"   "LELP1 MUTATED" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE"   "LELP1 MUTATED" "LELP1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"LELP1 WILD-TYPE"   "LELP1 MUTATED" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE"   "LELP1 MUTATED" "LELP1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"LELP1 WILD-TYPE"   "LELP1 MUTATED" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE"   "LELP1 MUTATED" "LELP1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
[1] "Remove cluster labels:" "LELP1 MUTATED"         
clus
  LELP1 MUTATED LELP1 WILD-TYPE 
              2             153 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2657      TCGA-44-2659      TCGA-44-2661 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4494      TCGA-49-4501 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-49-4505      TCGA-49-4506      TCGA-49-4507      TCGA-49-4510 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-50-5044      TCGA-50-5045 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1595      TCGA-55-1596 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5778      TCGA-64-5779      TCGA-64-5781 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-64-5815      TCGA-67-3770      TCGA-67-3771      TCGA-67-3772 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-67-3773      TCGA-67-3774      TCGA-67-6215      TCGA-67-6216 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-67-6217      TCGA-71-6725      TCGA-73-4658      TCGA-73-4659 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-73-4662      TCGA-73-4666      TCGA-73-4668      TCGA-73-4670 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-73-4675      TCGA-73-4676      TCGA-73-4677      TCGA-86-6562 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-91-6836 
"LELP1 WILD-TYPE" 
D143V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  LELP1 MUTATED          0        2         0         0          1          0
  LELP1 WILD-TYPE       37       51        11        23         32          6
                 vv
clus              STAGE IV
  LELP1 MUTATED          0
  LELP1 WILD-TYPE        9
D143V3, multiclass
                 vv
clus               T1  T2  T3  T4
  LELP1 MUTATED     0   2   0   1
  LELP1 WILD-TYPE  41 107  14   7
D143V4, multiclass
    clus
vv   LELP1 MUTATED LELP1 WILD-TYPE
  T1             0              41
  T2             2             107
  T3             0              14
  T4             1               7
                 vv
clus              N0 N1 N2+N3
  LELP1 MUTATED    3  0     0
  LELP1 WILD-TYPE 92 37    35
D143V5, multiclass
       clus
vv      LELP1 MUTATED LELP1 WILD-TYPE
  N0                3              92
  N1                0              37
  N2+N3             0              35
                 vv
clus               M0  M1  MX
  LELP1 MUTATED     3   0   0
  LELP1 WILD-TYPE 140   9  18
D143V6, multiclass
    clus
vv   LELP1 MUTATED LELP1 WILD-TYPE
  M0             3             140
  M1             0               9
  MX             0              18
D143V7, binary
                 cls
clus               0  1
  LELP1 MUTATED    0  3
  LELP1 WILD-TYPE 93 76
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LELP1 MUTATED      0    3
  LELP1 WILD-TYPE   93   76
        clus
vv       LELP1 MUTATED LELP1 WILD-TYPE
  FEMALE             0              93
  MALE               3              76
D143V8, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  LELP1 MUTATED                            0                                 1
  LELP1 WILD-TYPE                          2                                38
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  LELP1 MUTATED                                                    2
  LELP1 WILD-TYPE                                                113
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  LELP1 MUTATED                                            0
  LELP1 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  LELP1 MUTATED                                               0
  LELP1 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  LELP1 MUTATED                                0
  LELP1 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  LELP1 MUTATED                                    0
  LELP1 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  LELP1 MUTATED                              0                             0
  LELP1 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  LELP1 MUTATED                                               0
  LELP1 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  LELP1 MUTATED                              0
  LELP1 WILD-TYPE                            2
D143V9, multiclass
D143V10, binary
                 cls
clus                0   1
  LELP1 MUTATED     0   3
  LELP1 WILD-TYPE  14 155
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LELP1 MUTATED      0    3
  LELP1 WILD-TYPE   14  155
     clus
vv    LELP1 MUTATED LELP1 WILD-TYPE
  NO              0              14
  YES             3             155
D143V11, continuous
D143V12, continuous
                 vv
clus               R0  R1  R2  RX
  LELP1 MUTATED     1   0   0   1
  LELP1 WILD-TYPE 114   6   4   8
D143V13, multiclass
[1] "Remove cluster labels:" "LELP1 MUTATED"         
clus
  LELP1 MUTATED LELP1 WILD-TYPE 
              2             132 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-05-4382 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4384      TCGA-05-4389      TCGA-05-4390      TCGA-05-4395 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4396      TCGA-05-4397      TCGA-05-4398      TCGA-05-4402 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4403      TCGA-05-4405      TCGA-05-4415      TCGA-05-4417 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4422      TCGA-05-4424 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4425      TCGA-05-4426      TCGA-05-4427      TCGA-05-4430 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4432      TCGA-05-4433      TCGA-05-4434      TCGA-05-5420 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-5423      TCGA-05-5425      TCGA-05-5428      TCGA-05-5429 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-5715      TCGA-35-3615      TCGA-35-4122      TCGA-35-4123 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-35-5375      TCGA-38-4625      TCGA-38-4626      TCGA-38-4627 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-38-4628      TCGA-38-4629      TCGA-38-4630      TCGA-38-4631 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-38-4632      TCGA-38-6178      TCGA-44-2655      TCGA-44-2657 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3396      TCGA-44-3398 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-3918      TCGA-44-3919      TCGA-44-4112      TCGA-44-6144 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6775      TCGA-49-4486      TCGA-49-4487 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4494      TCGA-49-4501      TCGA-49-4505 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-49-4506      TCGA-49-4507      TCGA-49-4510      TCGA-49-4512 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-49-4514      TCGA-49-6742      TCGA-49-6744      TCGA-49-6767 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5051      TCGA-50-5055      TCGA-50-5066      TCGA-50-5931 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5942      TCGA-50-5944      TCGA-50-6593      TCGA-50-6597 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-55-1592      TCGA-55-1594      TCGA-55-1596      TCGA-55-5899 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-55-6642      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5778      TCGA-64-5779 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-67-3773      TCGA-67-3774      TCGA-67-4679      TCGA-67-6215 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-75-5122      TCGA-75-5125      TCGA-75-5126      TCGA-75-5146 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-75-5147      TCGA-75-6203      TCGA-75-6205      TCGA-75-6206 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-75-6207      TCGA-75-6211      TCGA-75-6212      TCGA-80-5611 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-86-6562      TCGA-91-6828      TCGA-91-6829      TCGA-91-6835 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 

Clustering(144) Variable = AOAH MUTATION ANALYSIS
D144V1, survival
                sevent
clus2             0  1
  AOAH MUTATED    4  3
  AOAH WILD-TYPE 95 53
  AOAH MUTATED AOAH WILD-TYPE 
             7            148 
  AOAH MUTATED AOAH WILD-TYPE 
             3             53 
$`AOAH MUTATED`
TCGA-05-4396 TCGA-05-4398 TCGA-05-4417 TCGA-49-4486 TCGA-49-6743 TCGA-50-6590 
        9.96        47.05        14.93        76.21        12.13        42.31 
TCGA-67-6217 
       13.87 

$`AOAH WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 
       24.03         8.02        19.00        20.05         2.96         8.98 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
       29.95        12.00        30.02        21.99        26.01        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02        15.02         4.96 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
       28.96        22.03         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        97.74       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61        14.73        21.93 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       46.98        13.15        44.94        24.36        42.08        42.77 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        37.15        38.24        23.51         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
       23.74        13.71        12.59        13.38        10.78         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
       27.78        11.90         5.42        12.16        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       36.49        16.41        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46         5.16 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       55.89        15.02        29.26        17.13        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       70.55        14.96        25.81        31.04        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 
       15.12        18.64        29.00        25.12        22.55         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        87.98 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        2.04        42.90        28.41        51.25        28.44         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       20.02        18.84        14.04        12.66         5.69         4.60 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        26.27        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 
        4.27         1.32         5.39         1.25        12.36        10.62 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33        10.16         2.60        13.71 

  AOAH MUTATED AOAH WILD-TYPE 
          9.96           0.07 
  AOAH MUTATED AOAH WILD-TYPE 
         76.21         120.79 
  AOAH MUTATED AOAH WILD-TYPE 
         14.93          21.06 
[1] "10.0 - 76.2 (14.9)" "0.1 - 120.8 (21.1)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"AOAH WILD-TYPE" "AOAH WILD-TYPE"   "AOAH MUTATED" "AOAH WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
  "AOAH MUTATED" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"AOAH WILD-TYPE"   "AOAH MUTATED" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE"   "AOAH MUTATED" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
  "AOAH MUTATED" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"AOAH WILD-TYPE" "AOAH WILD-TYPE"   "AOAH MUTATED" "AOAH WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"AOAH WILD-TYPE" "AOAH WILD-TYPE"   "AOAH MUTATED" "AOAH WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"AOAH WILD-TYPE" "AOAH WILD-TYPE"   "AOAH MUTATED" "AOAH WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
  "AOAH MUTATED" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"AOAH WILD-TYPE"   "AOAH MUTATED" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE"   "AOAH MUTATED" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
  "AOAH MUTATED" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"AOAH WILD-TYPE" "AOAH WILD-TYPE"   "AOAH MUTATED" "AOAH WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"AOAH WILD-TYPE" "AOAH WILD-TYPE"   "AOAH MUTATED" "AOAH WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"AOAH WILD-TYPE" "AOAH WILD-TYPE"   "AOAH MUTATED" "AOAH WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
  "AOAH MUTATED" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"AOAH WILD-TYPE"   "AOAH MUTATED" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE"   "AOAH MUTATED" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
  "AOAH MUTATED" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"AOAH WILD-TYPE" "AOAH WILD-TYPE"   "AOAH MUTATED" "AOAH WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"AOAH WILD-TYPE" "AOAH WILD-TYPE"   "AOAH MUTATED" "AOAH WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"AOAH WILD-TYPE" "AOAH WILD-TYPE" "AOAH WILD-TYPE" 
[1] "hr=" "1.2"
D144V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  AOAH MUTATED          1        2         1         0          2          2
  AOAH WILD-TYPE       36       51        10        23         31          4
                vv
clus             STAGE IV
  AOAH MUTATED          0
  AOAH WILD-TYPE        9
D144V3, multiclass
                vv
clus              T1  T2  T3  T4
  AOAH MUTATED     2   3   1   2
  AOAH WILD-TYPE  39 106  13   6
D144V4, multiclass
    clus
vv   AOAH MUTATED AOAH WILD-TYPE
  T1            2             39
  T2            3            106
  T3            1             13
  T4            2              6
                vv
clus             N0 N1 N2+N3
  AOAH MUTATED    3  2     3
  AOAH WILD-TYPE 92 35    32
D144V5, multiclass
       clus
vv      AOAH MUTATED AOAH WILD-TYPE
  N0               3             92
  N1               2             35
  N2+N3            3             32
                vv
clus              M0  M1  MX
  AOAH MUTATED     7   0   1
  AOAH WILD-TYPE 136   9  17
D144V6, multiclass
    clus
vv   AOAH MUTATED AOAH WILD-TYPE
  M0            7            136
  M1            0              9
  MX            1             17
D144V7, binary
                cls
clus              0  1
  AOAH MUTATED    6  2
  AOAH WILD-TYPE 87 77
[1] "tbl2"
                cls
clus             [,1] [,2]
  AOAH MUTATED      6    2
  AOAH WILD-TYPE   87   77
        clus
vv       AOAH MUTATED AOAH WILD-TYPE
  FEMALE            6             87
  MALE              2             77
D144V8, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  AOAH MUTATED                            0                                 3
  AOAH WILD-TYPE                          2                                36
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  AOAH MUTATED                                                    3
  AOAH WILD-TYPE                                                112
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  AOAH MUTATED                                            0
  AOAH WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  AOAH MUTATED                                               0
  AOAH WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  AOAH MUTATED                                1
  AOAH WILD-TYPE                              1
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  AOAH MUTATED                                    0
  AOAH WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  AOAH MUTATED                              0                             1
  AOAH WILD-TYPE                            2                             3
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  AOAH MUTATED                                               0
  AOAH WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  AOAH MUTATED                              0
  AOAH WILD-TYPE                            2
D144V9, multiclass
D144V10, binary
                cls
clus               0   1
  AOAH MUTATED     0   8
  AOAH WILD-TYPE  14 150
[1] "tbl2"
                cls
clus             [,1] [,2]
  AOAH MUTATED      0    8
  AOAH WILD-TYPE   14  150
     clus
vv    AOAH MUTATED AOAH WILD-TYPE
  NO             0             14
  YES            8            150
D144V11, continuous
D144V12, continuous
                vv
clus              R0  R1  R2  RX
  AOAH MUTATED     5   0   1   0
  AOAH WILD-TYPE 110   6   3   9
D144V13, multiclass
    clus
vv   AOAH MUTATED AOAH WILD-TYPE
  R0            5            110
  R1            0              6
  R2            1              3
  RX            0              9

Clustering(145) Variable = GRK5 MUTATION ANALYSIS
D145V1, survival
                sevent
clus2             0  1
  GRK5 MUTATED    2  4
  GRK5 WILD-TYPE 97 52
  GRK5 MUTATED GRK5 WILD-TYPE 
             6            149 
  GRK5 MUTATED GRK5 WILD-TYPE 
             4             52 
$`GRK5 MUTATED`
TCGA-05-4417 TCGA-38-4631 TCGA-44-2668 TCGA-44-4112 TCGA-50-5932 TCGA-64-5778 
       14.93        11.64         8.09        23.74        35.87        42.90 

$`GRK5 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
        2.96         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 
       15.02         4.96        28.96        22.03         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        97.74       120.79 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 
       37.71        49.02        28.37        35.28        44.61        14.73 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       21.93        46.98        13.15        44.94        24.36        42.08 
TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
       42.77         3.19        37.15        38.24        23.51         6.21 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       13.71        12.59        13.38        10.78         9.93        27.78 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
       11.90         5.42        12.16        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46         5.16 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       55.89        15.02        12.13        29.26        17.13        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        70.55        14.96        25.81        31.04        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        8.05         9.27         8.78        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12        18.64        29.00        25.12        22.55        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
       87.98         2.04        28.41        51.25        28.44         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       20.02        18.84        14.04        12.66         5.69         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        26.27 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 
       15.35         4.27         1.32         5.39         1.25        12.36 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       10.62        41.33        10.16         2.60        13.71 

  GRK5 MUTATED GRK5 WILD-TYPE 
          8.09           0.07 
  GRK5 MUTATED GRK5 WILD-TYPE 
         42.90         120.79 
  GRK5 MUTATED GRK5 WILD-TYPE 
        19.335         20.650 
[1] "8.1 - 42.9 (19.3)"  "0.1 - 120.8 (20.6)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"GRK5 WILD-TYPE"   "GRK5 MUTATED" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"GRK5 WILD-TYPE"   "GRK5 MUTATED" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
  "GRK5 MUTATED" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"GRK5 WILD-TYPE"   "GRK5 MUTATED" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"GRK5 WILD-TYPE"   "GRK5 MUTATED" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE"   "GRK5 MUTATED" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"GRK5 WILD-TYPE"   "GRK5 MUTATED" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"GRK5 WILD-TYPE"   "GRK5 MUTATED" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
  "GRK5 MUTATED" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"GRK5 WILD-TYPE"   "GRK5 MUTATED" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"GRK5 WILD-TYPE"   "GRK5 MUTATED" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE"   "GRK5 MUTATED" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"GRK5 WILD-TYPE"   "GRK5 MUTATED" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"GRK5 WILD-TYPE"   "GRK5 MUTATED" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
  "GRK5 MUTATED" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"GRK5 WILD-TYPE"   "GRK5 MUTATED" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"GRK5 WILD-TYPE"   "GRK5 MUTATED" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE"   "GRK5 MUTATED" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
[1] "hr=" "2.1"
D145V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  GRK5 MUTATED          0        6         0         1          0          0
  GRK5 WILD-TYPE       37       47        11        22         33          6
                vv
clus             STAGE IV
  GRK5 MUTATED          0
  GRK5 WILD-TYPE        9
D145V3, multiclass
                vv
clus              T1  T2  T3  T4
  GRK5 MUTATED     0   7   0   0
  GRK5 WILD-TYPE  41 102  14   8
D145V4, multiclass
    clus
vv   GRK5 MUTATED GRK5 WILD-TYPE
  T1            0             41
  T2            7            102
  T3            0             14
  T4            0              8
                vv
clus             N0 N1 N2+N3
  GRK5 MUTATED    6  1     0
  GRK5 WILD-TYPE 89 36    35
D145V5, multiclass
       clus
vv      GRK5 MUTATED GRK5 WILD-TYPE
  N0               6             89
  N1               1             36
  N2+N3            0             35
                vv
clus              M0  M1  MX
  GRK5 MUTATED     7   0   0
  GRK5 WILD-TYPE 136   9  18
D145V6, multiclass
    clus
vv   GRK5 MUTATED GRK5 WILD-TYPE
  M0            7            136
  M1            0              9
  MX            0             18
D145V7, binary
                cls
clus              0  1
  GRK5 MUTATED    3  4
  GRK5 WILD-TYPE 90 75
[1] "tbl2"
                cls
clus             [,1] [,2]
  GRK5 MUTATED      3    4
  GRK5 WILD-TYPE   90   75
        clus
vv       GRK5 MUTATED GRK5 WILD-TYPE
  FEMALE            3             90
  MALE              4             75
D145V8, continuous
[1] "Remove cluster labels:" "GRK5 MUTATED"          
clus
  GRK5 MUTATED GRK5 WILD-TYPE 
             1             11 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-64-1677 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-71-6725     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4676     TCGA-75-5122 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  GRK5 MUTATED                            0                                 2
  GRK5 WILD-TYPE                          2                                37
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  GRK5 MUTATED                                                    4
  GRK5 WILD-TYPE                                                111
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  GRK5 MUTATED                                            0
  GRK5 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  GRK5 MUTATED                                               1
  GRK5 WILD-TYPE                                             1
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  GRK5 MUTATED                                0
  GRK5 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  GRK5 MUTATED                                    0
  GRK5 WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  GRK5 MUTATED                              0                             0
  GRK5 WILD-TYPE                            2                             4
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  GRK5 MUTATED                                               0
  GRK5 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  GRK5 MUTATED                              0
  GRK5 WILD-TYPE                            2
D145V9, multiclass
D145V10, binary
                cls
clus               0   1
  GRK5 MUTATED     0   7
  GRK5 WILD-TYPE  14 151
[1] "tbl2"
                cls
clus             [,1] [,2]
  GRK5 MUTATED      0    7
  GRK5 WILD-TYPE   14  151
     clus
vv    GRK5 MUTATED GRK5 WILD-TYPE
  NO             0             14
  YES            7            151
D145V11, continuous
D145V12, continuous
                vv
clus              R0  R1  R2  RX
  GRK5 MUTATED     5   0   0   1
  GRK5 WILD-TYPE 110   6   4   8
D145V13, multiclass
    clus
vv   GRK5 MUTATED GRK5 WILD-TYPE
  R0            5            110
  R1            0              6
  R2            0              4
  RX            1              8

Clustering(146) Variable = FCRL4 MUTATION ANALYSIS
D146V1, survival
                 sevent
clus2              0  1
  FCRL4 MUTATED    5  2
  FCRL4 WILD-TYPE 94 54
  FCRL4 MUTATED FCRL4 WILD-TYPE 
              7             148 
  FCRL4 MUTATED FCRL4 WILD-TYPE 
              2              54 
$`FCRL4 MUTATED`
TCGA-05-4396 TCGA-05-5428 TCGA-38-4626 TCGA-44-2656 TCGA-44-6144 TCGA-49-4486 
        9.96        22.03       120.79        46.98        13.38        76.21 
TCGA-67-3771 
       20.02 

$`FCRL4 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
       15.02         4.96        28.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 
        7.36         5.95         8.68        97.74        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61        14.73        21.93 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        44.94        24.36        42.08        42.77         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        37.15        38.24        23.51         6.21        23.74 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
       13.71        12.59        10.78         9.93        27.78        11.90 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42        12.16        63.72        32.45        36.49        16.41 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46         5.16        55.89        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        29.26        17.13        20.48        71.47        70.55 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81        31.04        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
       18.64        29.00        25.12        22.55        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        87.98 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        2.04        42.90        28.41        51.25        28.44         0.99 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
       18.84        14.04        12.66         5.69         4.60        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        26.27        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 
        4.27         1.32         5.39         1.25        12.36        10.62 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33        10.16         2.60        13.71 

  FCRL4 MUTATED FCRL4 WILD-TYPE 
           9.96            0.07 
  FCRL4 MUTATED FCRL4 WILD-TYPE 
         120.79           97.74 
  FCRL4 MUTATED FCRL4 WILD-TYPE 
         22.030          20.565 
[1] "10.0 - 120.8 (22.0)" "0.1 - 97.7 (20.6)"  
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE"   "FCRL4 MUTATED" "FCRL4 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
  "FCRL4 MUTATED" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
  "FCRL4 MUTATED" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"FCRL4 WILD-TYPE"   "FCRL4 MUTATED" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
  "FCRL4 MUTATED" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE"   "FCRL4 MUTATED" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "FCRL4 MUTATED" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE"   "FCRL4 MUTATED" "FCRL4 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
  "FCRL4 MUTATED" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
  "FCRL4 MUTATED" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"FCRL4 WILD-TYPE"   "FCRL4 MUTATED" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
  "FCRL4 MUTATED" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE"   "FCRL4 MUTATED" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "FCRL4 MUTATED" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE"   "FCRL4 MUTATED" "FCRL4 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
  "FCRL4 MUTATED" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
  "FCRL4 MUTATED" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"FCRL4 WILD-TYPE"   "FCRL4 MUTATED" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
  "FCRL4 MUTATED" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE"   "FCRL4 MUTATED" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "FCRL4 MUTATED" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
[1] "hr=" "2.5"
D146V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  FCRL4 MUTATED          3        1         2         0          0          1
  FCRL4 WILD-TYPE       34       52         9        23         33          5
                 vv
clus              STAGE IV
  FCRL4 MUTATED          0
  FCRL4 WILD-TYPE        9
D146V3, multiclass
                 vv
clus               T1  T2  T3  T4
  FCRL4 MUTATED     4   2   0   1
  FCRL4 WILD-TYPE  37 107  14   7
D146V4, multiclass
    clus
vv   FCRL4 MUTATED FCRL4 WILD-TYPE
  T1             4              37
  T2             2             107
  T3             0              14
  T4             1               7
                 vv
clus              N0 N1 N2+N3
  FCRL4 MUTATED    5  2     0
  FCRL4 WILD-TYPE 90 35    35
D146V5, multiclass
       clus
vv      FCRL4 MUTATED FCRL4 WILD-TYPE
  N0                5              90
  N1                2              35
  N2+N3             0              35
                 vv
clus               M0  M1  MX
  FCRL4 MUTATED     7   0   0
  FCRL4 WILD-TYPE 136   9  18
D146V6, multiclass
    clus
vv   FCRL4 MUTATED FCRL4 WILD-TYPE
  M0             7             136
  M1             0               9
  MX             0              18
D146V7, binary
                 cls
clus               0  1
  FCRL4 MUTATED    2  5
  FCRL4 WILD-TYPE 91 74
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FCRL4 MUTATED      2    5
  FCRL4 WILD-TYPE   91   74
        clus
vv       FCRL4 MUTATED FCRL4 WILD-TYPE
  FEMALE             2              91
  MALE               5              74
D146V8, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  FCRL4 MUTATED                            0                                 2
  FCRL4 WILD-TYPE                          2                                37
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  FCRL4 MUTATED                                                    5
  FCRL4 WILD-TYPE                                                110
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  FCRL4 MUTATED                                            0
  FCRL4 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  FCRL4 MUTATED                                               0
  FCRL4 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  FCRL4 MUTATED                                0
  FCRL4 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  FCRL4 MUTATED                                    0
  FCRL4 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  FCRL4 MUTATED                              0                             0
  FCRL4 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  FCRL4 MUTATED                                               0
  FCRL4 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  FCRL4 MUTATED                              0
  FCRL4 WILD-TYPE                            2
D146V9, multiclass
D146V10, binary
                 cls
clus                0   1
  FCRL4 MUTATED     0   7
  FCRL4 WILD-TYPE  14 151
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FCRL4 MUTATED      0    7
  FCRL4 WILD-TYPE   14  151
     clus
vv    FCRL4 MUTATED FCRL4 WILD-TYPE
  NO              0              14
  YES             7             151
D146V11, continuous
D146V12, continuous
                 vv
clus               R0  R1  R2  RX
  FCRL4 MUTATED     5   0   0   1
  FCRL4 WILD-TYPE 110   6   4   8
D146V13, multiclass
    clus
vv   FCRL4 MUTATED FCRL4 WILD-TYPE
  R0             5             110
  R1             0               6
  R2             0               4
  RX             1               8

Clustering(147) Variable = NT5DC3 MUTATION ANALYSIS
D147V1, survival
                  sevent
clus2               0  1
  NT5DC3 MUTATED    3  2
  NT5DC3 WILD-TYPE 96 54
  NT5DC3 MUTATED NT5DC3 WILD-TYPE 
               5              150 
  NT5DC3 MUTATED NT5DC3 WILD-TYPE 
               2               54 
$`NT5DC3 MUTATED`
TCGA-05-4250 TCGA-05-4396 TCGA-50-5049 TCGA-64-5778 TCGA-67-6215 
        3.98         9.96        70.55        42.90         5.69 

$`NT5DC3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4397 
       50.07        19.92        14.01        45.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        4.96        28.96        22.03         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61        14.73 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       21.93        46.98        13.15        44.94        24.36        42.08 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       42.77         3.19         8.09        37.15        38.24        23.51 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21        23.74        13.71        12.59        13.38        10.78 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93        27.78        11.90         5.42        12.16        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46         5.16        55.89        15.02        12.13        29.26 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       17.13        20.48        71.47        14.96        25.81        31.04 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12        18.64        29.00        25.12 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       22.55        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 
       39.09        37.02        87.98         2.04        28.41        51.25 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       28.44         0.99        20.02        18.84        14.04        12.66 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        4.60        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       26.27        15.35         4.27         1.32         5.39         1.25 
TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       12.36        10.62        41.33        10.16         2.60        13.71 

  NT5DC3 MUTATED NT5DC3 WILD-TYPE 
            3.98             0.07 
  NT5DC3 MUTATED NT5DC3 WILD-TYPE 
           70.55           120.79 
  NT5DC3 MUTATED NT5DC3 WILD-TYPE 
            9.96            21.06 
[1] "4.0 - 70.5 (10.0)"  "0.1 - 120.8 (21.1)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"NT5DC3 WILD-TYPE"   "NT5DC3 MUTATED" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE"   "NT5DC3 MUTATED" "NT5DC3 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"NT5DC3 WILD-TYPE"   "NT5DC3 MUTATED" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE"   "NT5DC3 MUTATED" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
  "NT5DC3 MUTATED" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"NT5DC3 WILD-TYPE"   "NT5DC3 MUTATED" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE"   "NT5DC3 MUTATED" "NT5DC3 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"NT5DC3 WILD-TYPE"   "NT5DC3 MUTATED" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE"   "NT5DC3 MUTATED" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
  "NT5DC3 MUTATED" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"NT5DC3 WILD-TYPE"   "NT5DC3 MUTATED" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE"   "NT5DC3 MUTATED" "NT5DC3 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"NT5DC3 WILD-TYPE"   "NT5DC3 MUTATED" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE"   "NT5DC3 MUTATED" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
  "NT5DC3 MUTATED" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
[1] "hr=" "1.1"
D147V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  NT5DC3 MUTATED          1        2         0         0          1          1
  NT5DC3 WILD-TYPE       36       51        11        23         32          5
                  vv
clus               STAGE IV
  NT5DC3 MUTATED          0
  NT5DC3 WILD-TYPE        9
D147V3, multiclass
                  vv
clus                T1  T2  T3  T4
  NT5DC3 MUTATED     0   3   1   1
  NT5DC3 WILD-TYPE  41 106  13   7
D147V4, multiclass
    clus
vv   NT5DC3 MUTATED NT5DC3 WILD-TYPE
  T1              0               41
  T2              3              106
  T3              1               13
  T4              1                7
                  vv
clus               N0 N1 N2+N3
  NT5DC3 MUTATED    3  2     0
  NT5DC3 WILD-TYPE 92 35    35
D147V5, multiclass
       clus
vv      NT5DC3 MUTATED NT5DC3 WILD-TYPE
  N0                 3               92
  N1                 2               35
  N2+N3              0               35
                  vv
clus                M0  M1  MX
  NT5DC3 MUTATED     5   0   0
  NT5DC3 WILD-TYPE 138   9  18
D147V6, multiclass
    clus
vv   NT5DC3 MUTATED NT5DC3 WILD-TYPE
  M0              5              138
  M1              0                9
  MX              0               18
D147V7, binary
                  cls
clus                0  1
  NT5DC3 MUTATED    2  3
  NT5DC3 WILD-TYPE 91 76
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NT5DC3 MUTATED      2    3
  NT5DC3 WILD-TYPE   91   76
        clus
vv       NT5DC3 MUTATED NT5DC3 WILD-TYPE
  FEMALE              2               91
  MALE                3               76
D147V8, continuous
[1] "Remove cluster labels:" "NT5DC3 MUTATED"        
clus
  NT5DC3 MUTATED NT5DC3 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  NT5DC3 MUTATED                            0                                 1
  NT5DC3 WILD-TYPE                          2                                38
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  NT5DC3 MUTATED                                                    3
  NT5DC3 WILD-TYPE                                                112
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  NT5DC3 MUTATED                                            0
  NT5DC3 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  NT5DC3 MUTATED                                               1
  NT5DC3 WILD-TYPE                                             1
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  NT5DC3 MUTATED                                0
  NT5DC3 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  NT5DC3 MUTATED                                    0
  NT5DC3 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  NT5DC3 MUTATED                              0                             0
  NT5DC3 WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  NT5DC3 MUTATED                                               0
  NT5DC3 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  NT5DC3 MUTATED                              0
  NT5DC3 WILD-TYPE                            2
D147V9, multiclass
D147V10, binary
                  cls
clus                 0   1
  NT5DC3 MUTATED     1   4
  NT5DC3 WILD-TYPE  13 154
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NT5DC3 MUTATED      1    4
  NT5DC3 WILD-TYPE   13  154
     clus
vv    NT5DC3 MUTATED NT5DC3 WILD-TYPE
  NO               1               13
  YES              4              154
D147V11, continuous
D147V12, continuous
[1] "Remove cluster labels:" "NT5DC3 MUTATED"        
clus
  NT5DC3 MUTATED NT5DC3 WILD-TYPE 
               2               66 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4405       TCGA-05-4410 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4424       TCGA-05-4427 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-05-4433       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-05-5428       TCGA-35-4122       TCGA-35-4123       TCGA-35-5375 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-38-4625       TCGA-38-4626       TCGA-44-2655       TCGA-44-2656 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2662       TCGA-44-2666 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5645       TCGA-44-6144       TCGA-44-6145 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-44-6147       TCGA-44-6148       TCGA-44-6774       TCGA-44-6775 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-44-6776       TCGA-44-6777       TCGA-44-6778       TCGA-44-6779 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-49-4486       TCGA-49-4494       TCGA-49-4505       TCGA-55-1592 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-55-1594       TCGA-55-1595       TCGA-55-1596       TCGA-55-5899 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-55-6642       TCGA-55-6712       TCGA-64-1677       TCGA-64-1678 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5779 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-64-5781       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-91-6829       TCGA-91-6836 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
                  vv
clus                R0  R1  R2  RX
  NT5DC3 MUTATED     3   0   1   0
  NT5DC3 WILD-TYPE 112   6   3   9
D147V13, multiclass
    clus
vv   NT5DC3 MUTATED NT5DC3 WILD-TYPE
  R0              3              112
  R1              0                6
  R2              1                3
  RX              0                9

Clustering(148) Variable = NAALAD2 MUTATION ANALYSIS
D148V1, survival
                   sevent
clus2                0  1
  NAALAD2 MUTATED    8  1
  NAALAD2 WILD-TYPE 91 55
  NAALAD2 MUTATED NAALAD2 WILD-TYPE 
                9               146 
  NAALAD2 MUTATED NAALAD2 WILD-TYPE 
                1                55 
$`NAALAD2 MUTATED`
TCGA-05-4382 TCGA-05-4398 TCGA-05-4424 TCGA-05-4427 TCGA-05-5428 TCGA-44-2659 
       19.92        47.05        30.02        26.01        22.03        44.94 
TCGA-44-5643 TCGA-50-5066 TCGA-50-6595 
       13.71        31.04         6.21 

$`NAALAD2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 
       50.07         3.98        14.01        45.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 TCGA-05-4430 
        8.98        29.95        12.00        21.99        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02        15.02         4.96        28.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       97.74       120.79        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       11.64        44.61        14.73        21.93        46.98        13.15 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
       24.36        42.08        42.77         3.19         8.09        37.15 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5645 TCGA-44-6144 
       38.24        23.51         6.21        23.74        12.59        13.38 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
       10.78         9.93        27.78        11.90         5.42        12.16 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46         5.16        55.89        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       29.26        17.13        20.48        71.47        70.55        14.96 
TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       25.81        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12        18.64        29.00 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       25.12        22.55        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       12.16        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        87.98         2.04        42.90        28.41 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       51.25        28.44         0.99        20.02        18.84        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
       12.66         5.69         4.60        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        26.27        15.35         4.27         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        5.39         1.25        12.36        10.62        41.33        10.16 
TCGA-91-6835 TCGA-91-6836 
        2.60        13.71 

  NAALAD2 MUTATED NAALAD2 WILD-TYPE 
             6.21              0.07 
  NAALAD2 MUTATED NAALAD2 WILD-TYPE 
            47.05            120.79 
  NAALAD2 MUTATED NAALAD2 WILD-TYPE 
           26.010            20.265 
[1] "6.2 - 47.0 (26.0)"  "0.1 - 120.8 (20.3)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
  "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
  "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
  "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
  "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
  "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
  "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
  "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
  "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
  "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
[1] "hr=" "3.6"
D148V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  NAALAD2 MUTATED          0        2         1         3          2          1
  NAALAD2 WILD-TYPE       37       51        10        20         31          5
                   vv
clus                STAGE IV
  NAALAD2 MUTATED          0
  NAALAD2 WILD-TYPE        9
D148V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  NAALAD2 MUTATED     2   5   1   1
  NAALAD2 WILD-TYPE  39 104  13   7
D148V4, multiclass
    clus
vv   NAALAD2 MUTATED NAALAD2 WILD-TYPE
  T1               2                39
  T2               5               104
  T3               1                13
  T4               1                 7
                   vv
clus                N0 N1 N2+N3
  NAALAD2 MUTATED    3  3     3
  NAALAD2 WILD-TYPE 92 34    32
D148V5, multiclass
       clus
vv      NAALAD2 MUTATED NAALAD2 WILD-TYPE
  N0                  3                92
  N1                  3                34
  N2+N3               3                32
                   vv
clus                 M0  M1  MX
  NAALAD2 MUTATED     9   0   0
  NAALAD2 WILD-TYPE 134   9  18
D148V6, multiclass
    clus
vv   NAALAD2 MUTATED NAALAD2 WILD-TYPE
  M0               9               134
  M1               0                 9
  MX               0                18
D148V7, binary
                   cls
clus                 0  1
  NAALAD2 MUTATED    4  5
  NAALAD2 WILD-TYPE 89 74
[1] "tbl2"
                   cls
clus                [,1] [,2]
  NAALAD2 MUTATED      4    5
  NAALAD2 WILD-TYPE   89   74
        clus
vv       NAALAD2 MUTATED NAALAD2 WILD-TYPE
  FEMALE               4                89
  MALE                 5                74
D148V8, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  NAALAD2 MUTATED                            0
  NAALAD2 WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  NAALAD2 MUTATED                                   6
  NAALAD2 WILD-TYPE                                33
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  NAALAD2 MUTATED                                                    3
  NAALAD2 WILD-TYPE                                                112
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  NAALAD2 MUTATED                                            0
  NAALAD2 WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  NAALAD2 MUTATED                                               0
  NAALAD2 WILD-TYPE                                             2
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  NAALAD2 MUTATED                                0
  NAALAD2 WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  NAALAD2 MUTATED                                    0
  NAALAD2 WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  NAALAD2 MUTATED                              0                             0
  NAALAD2 WILD-TYPE                            2                             4
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  NAALAD2 MUTATED                                               0
  NAALAD2 WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  NAALAD2 MUTATED                              0
  NAALAD2 WILD-TYPE                            2
D148V9, multiclass
D148V10, binary
                   cls
clus                  0   1
  NAALAD2 MUTATED     1   8
  NAALAD2 WILD-TYPE  13 150
[1] "tbl2"
                   cls
clus                [,1] [,2]
  NAALAD2 MUTATED      1    8
  NAALAD2 WILD-TYPE   13  150
     clus
vv    NAALAD2 MUTATED NAALAD2 WILD-TYPE
  NO                1                13
  YES               8               150
D148V11, continuous
D148V12, continuous
                   vv
clus                 R0  R1  R2  RX
  NAALAD2 MUTATED     6   1   0   0
  NAALAD2 WILD-TYPE 109   5   4   9
D148V13, multiclass
    clus
vv   NAALAD2 MUTATED NAALAD2 WILD-TYPE
  R0               6               109
  R1               1                 5
  R2               0                 4
  RX               0                 9

Clustering(149) Variable = C8ORF37 MUTATION ANALYSIS
D149V1, survival
                   sevent
clus2                0  1
  C8ORF37 MUTATED    3  2
  C8ORF37 WILD-TYPE 96 54
  C8ORF37 MUTATED C8ORF37 WILD-TYPE 
                5               150 
  C8ORF37 MUTATED C8ORF37 WILD-TYPE 
                2                54 
$`C8ORF37 MUTATED`
TCGA-05-4396 TCGA-05-4427 TCGA-38-4631 TCGA-50-5049 TCGA-50-6597 
        9.96        26.01        11.64        70.55        33.37 

$`C8ORF37 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        4.96        28.96        22.03         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       49.02        28.37        35.28        44.61        14.73        21.93 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       46.98        13.15        44.94        24.36        42.08        42.77 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        37.15        38.24        23.51         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
       23.74        13.71        12.59        13.38        10.78         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
       27.78        11.90         5.42        12.16        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
        5.16        55.89        15.02        12.13        29.26        17.13 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       20.48        71.47        14.96        25.81        31.04        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12        18.64        29.00        25.12        22.55 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       87.98         2.04        42.90        28.41        51.25        28.44 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99        20.02        18.84        14.04        12.66         5.69 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        4.60        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       26.27        15.35         4.27         1.32         5.39         1.25 
TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       12.36        10.62        41.33        10.16         2.60        13.71 

  C8ORF37 MUTATED C8ORF37 WILD-TYPE 
             9.96              0.07 
  C8ORF37 MUTATED C8ORF37 WILD-TYPE 
            70.55            120.79 
  C8ORF37 MUTATED C8ORF37 WILD-TYPE 
           26.010            20.565 
[1] "10.0 - 70.5 (26.0)" "0.1 - 120.8 (20.6)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE"   "C8ORF37 MUTATED" "C8ORF37 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "C8ORF37 MUTATED" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"C8ORF37 WILD-TYPE"   "C8ORF37 MUTATED" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"C8ORF37 WILD-TYPE"   "C8ORF37 MUTATED" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
  "C8ORF37 MUTATED" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE"   "C8ORF37 MUTATED" "C8ORF37 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "C8ORF37 MUTATED" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"C8ORF37 WILD-TYPE"   "C8ORF37 MUTATED" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"C8ORF37 WILD-TYPE"   "C8ORF37 MUTATED" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
  "C8ORF37 MUTATED" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE"   "C8ORF37 MUTATED" "C8ORF37 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "C8ORF37 MUTATED" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"C8ORF37 WILD-TYPE"   "C8ORF37 MUTATED" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"C8ORF37 WILD-TYPE"   "C8ORF37 MUTATED" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
  "C8ORF37 MUTATED" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" "C8ORF37 WILD-TYPE" 
[1] "hr=" "1"  
D149V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  C8ORF37 MUTATED          1        3         0         1          0          1
  C8ORF37 WILD-TYPE       36       50        11        22         33          5
                   vv
clus                STAGE IV
  C8ORF37 MUTATED          0
  C8ORF37 WILD-TYPE        9
D149V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  C8ORF37 MUTATED     0   5   0   1
  C8ORF37 WILD-TYPE  41 104  14   7
D149V4, multiclass
    clus
vv   C8ORF37 MUTATED C8ORF37 WILD-TYPE
  T1               0                41
  T2               5               104
  T3               0                14
  T4               1                 7
                   vv
clus                N0 N1 N2+N3
  C8ORF37 MUTATED    4  2     0
  C8ORF37 WILD-TYPE 91 35    35
D149V5, multiclass
       clus
vv      C8ORF37 MUTATED C8ORF37 WILD-TYPE
  N0                  4                91
  N1                  2                35
  N2+N3               0                35
                   vv
clus                 M0  M1  MX
  C8ORF37 MUTATED     6   0   0
  C8ORF37 WILD-TYPE 137   9  18
D149V6, multiclass
    clus
vv   C8ORF37 MUTATED C8ORF37 WILD-TYPE
  M0               6               137
  M1               0                 9
  MX               0                18
D149V7, binary
                   cls
clus                 0  1
  C8ORF37 MUTATED    3  3
  C8ORF37 WILD-TYPE 90 76
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C8ORF37 MUTATED      3    3
  C8ORF37 WILD-TYPE   90   76
        clus
vv       C8ORF37 MUTATED C8ORF37 WILD-TYPE
  FEMALE               3                90
  MALE                 3                76
D149V8, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  C8ORF37 MUTATED                            0
  C8ORF37 WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  C8ORF37 MUTATED                                   3
  C8ORF37 WILD-TYPE                                36
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  C8ORF37 MUTATED                                                    3
  C8ORF37 WILD-TYPE                                                112
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  C8ORF37 MUTATED                                            0
  C8ORF37 WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  C8ORF37 MUTATED                                               0
  C8ORF37 WILD-TYPE                                             2
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  C8ORF37 MUTATED                                0
  C8ORF37 WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  C8ORF37 MUTATED                                    0
  C8ORF37 WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  C8ORF37 MUTATED                              0                             0
  C8ORF37 WILD-TYPE                            2                             4
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  C8ORF37 MUTATED                                               0
  C8ORF37 WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  C8ORF37 MUTATED                              0
  C8ORF37 WILD-TYPE                            2
D149V9, multiclass
D149V10, binary
                   cls
clus                  0   1
  C8ORF37 MUTATED     1   5
  C8ORF37 WILD-TYPE  13 153
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C8ORF37 MUTATED      1    5
  C8ORF37 WILD-TYPE   13  153
     clus
vv    C8ORF37 MUTATED C8ORF37 WILD-TYPE
  NO                1                13
  YES               5               153
D149V11, continuous
D149V12, continuous
                   vv
clus                 R0  R1  R2  RX
  C8ORF37 MUTATED     4   0   0   1
  C8ORF37 WILD-TYPE 111   6   4   8
D149V13, multiclass
    clus
vv   C8ORF37 MUTATED C8ORF37 WILD-TYPE
  R0               4               111
  R1               0                 6
  R2               0                 4
  RX               1                 8

Clustering(150) Variable = XIRP2 MUTATION ANALYSIS
D150V1, survival
                 sevent
clus2              0  1
  XIRP2 MUTATED   26 15
  XIRP2 WILD-TYPE 73 41
  XIRP2 MUTATED XIRP2 WILD-TYPE 
             41             114 
  XIRP2 MUTATED XIRP2 WILD-TYPE 
             15              41 
$`XIRP2 MUTATED`
TCGA-05-4382 TCGA-05-4390 TCGA-05-4396 TCGA-05-4398 TCGA-05-4405 TCGA-05-4420 
       19.92        37.02         9.96        47.05        20.05        29.95 
TCGA-05-4424 TCGA-05-4427 TCGA-05-5428 TCGA-38-4625 TCGA-38-4630 TCGA-38-4631 
       30.02        26.01        22.03        97.74        35.28        11.64 
TCGA-38-4632 TCGA-44-2657 TCGA-44-2668 TCGA-44-3918 TCGA-44-4112 TCGA-44-6776 
       44.61        13.15         8.09        23.51        23.74        63.72 
TCGA-49-6742 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       15.02        71.47        70.55        25.81        31.04        49.28 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-6590 TCGA-50-6591 TCGA-55-1592 
       15.12        18.64        29.00        42.31         3.88        23.05 
TCGA-55-5899 TCGA-55-6642 TCGA-64-1678 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
        2.86        32.61        39.09        28.41        51.25        28.44 
TCGA-67-3771 TCGA-73-4659 TCGA-73-4666 TCGA-86-6562 TCGA-91-6829 
       20.02        23.38        26.27        12.36        41.33 

$`XIRP2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4397 TCGA-05-4402 
       50.07         3.98        14.01        45.01        24.03         8.02 
TCGA-05-4403 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4422 TCGA-05-4425 
       19.00         2.96        14.93         8.98        12.00        21.99 
TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96        28.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        5.95         8.68       120.79        37.71        49.02        28.37 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       14.73        21.93        46.98        44.94        24.36        42.08 
TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-5643 
       42.77         3.19        37.15        38.24         6.21        13.71 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
       12.59        13.38        10.78         9.93        27.78        11.90 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
        5.42        12.16        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 
       32.84         8.81        29.46         5.16        55.89        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5051 TCGA-50-5072 TCGA-50-5930 
       29.26        17.13        20.48        14.96         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5944 
        8.78        35.87        77.88        21.47         8.45        25.12 
TCGA-50-5946 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
       22.55        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6712 TCGA-64-1676 
       38.73        48.62        45.17         0.07         0.79        56.81 
TCGA-64-1677 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-67-3770 
       20.65        37.02        87.98         2.04        42.90         0.99 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
       18.84        14.04        12.66         5.69         4.60        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
        2.01        52.57        29.95        15.35         4.27         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        5.39         1.25        10.62        10.16         2.60        13.71 

  XIRP2 MUTATED XIRP2 WILD-TYPE 
           2.86            0.07 
  XIRP2 MUTATED XIRP2 WILD-TYPE 
          97.74          120.79 
  XIRP2 MUTATED XIRP2 WILD-TYPE 
          26.27           15.02 
[1] "2.9 - 97.7 (26.3)"  "0.1 - 120.8 (15.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE"   "XIRP2 MUTATED" "XIRP2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"XIRP2 WILD-TYPE"   "XIRP2 MUTATED"   "XIRP2 MUTATED" "XIRP2 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "XIRP2 MUTATED" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE"   "XIRP2 MUTATED" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE"   "XIRP2 MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"XIRP2 WILD-TYPE"   "XIRP2 MUTATED" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "XIRP2 MUTATED" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
  "XIRP2 MUTATED" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE"   "XIRP2 MUTATED" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
  "XIRP2 MUTATED"   "XIRP2 MUTATED"   "XIRP2 MUTATED" "XIRP2 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE"   "XIRP2 MUTATED" "XIRP2 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
  "XIRP2 MUTATED" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE"   "XIRP2 MUTATED" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"XIRP2 WILD-TYPE"   "XIRP2 MUTATED" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE"   "XIRP2 MUTATED" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE"   "XIRP2 MUTATED" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
  "XIRP2 MUTATED"   "XIRP2 MUTATED" "XIRP2 WILD-TYPE"   "XIRP2 MUTATED" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
  "XIRP2 MUTATED"   "XIRP2 MUTATED" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"XIRP2 WILD-TYPE"   "XIRP2 MUTATED"   "XIRP2 MUTATED"   "XIRP2 MUTATED" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE"   "XIRP2 MUTATED"   "XIRP2 MUTATED" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"XIRP2 WILD-TYPE"   "XIRP2 MUTATED" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"XIRP2 WILD-TYPE"   "XIRP2 MUTATED" "XIRP2 WILD-TYPE"   "XIRP2 MUTATED" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE"   "XIRP2 MUTATED" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
  "XIRP2 MUTATED"   "XIRP2 MUTATED"   "XIRP2 MUTATED" "XIRP2 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "XIRP2 MUTATED" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"XIRP2 WILD-TYPE"   "XIRP2 MUTATED" "XIRP2 WILD-TYPE"   "XIRP2 MUTATED" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"XIRP2 WILD-TYPE"   "XIRP2 MUTATED" "XIRP2 WILD-TYPE"   "XIRP2 MUTATED" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE"   "XIRP2 MUTATED" "XIRP2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"XIRP2 WILD-TYPE"   "XIRP2 MUTATED"   "XIRP2 MUTATED" "XIRP2 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "XIRP2 MUTATED" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE"   "XIRP2 MUTATED" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE"   "XIRP2 MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"XIRP2 WILD-TYPE"   "XIRP2 MUTATED" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "XIRP2 MUTATED" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
  "XIRP2 MUTATED" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE"   "XIRP2 MUTATED" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
  "XIRP2 MUTATED"   "XIRP2 MUTATED"   "XIRP2 MUTATED" "XIRP2 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE"   "XIRP2 MUTATED" "XIRP2 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
  "XIRP2 MUTATED" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE"   "XIRP2 MUTATED" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"XIRP2 WILD-TYPE"   "XIRP2 MUTATED" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE"   "XIRP2 MUTATED" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE"   "XIRP2 MUTATED" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
  "XIRP2 MUTATED"   "XIRP2 MUTATED" "XIRP2 WILD-TYPE"   "XIRP2 MUTATED" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
  "XIRP2 MUTATED"   "XIRP2 MUTATED" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"XIRP2 WILD-TYPE"   "XIRP2 MUTATED"   "XIRP2 MUTATED"   "XIRP2 MUTATED" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE"   "XIRP2 MUTATED"   "XIRP2 MUTATED" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"XIRP2 WILD-TYPE"   "XIRP2 MUTATED" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"XIRP2 WILD-TYPE"   "XIRP2 MUTATED" "XIRP2 WILD-TYPE"   "XIRP2 MUTATED" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE"   "XIRP2 MUTATED" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
  "XIRP2 MUTATED"   "XIRP2 MUTATED"   "XIRP2 MUTATED" "XIRP2 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "XIRP2 MUTATED" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"XIRP2 WILD-TYPE"   "XIRP2 MUTATED" "XIRP2 WILD-TYPE"   "XIRP2 MUTATED" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"XIRP2 WILD-TYPE"   "XIRP2 MUTATED" "XIRP2 WILD-TYPE"   "XIRP2 MUTATED" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE"   "XIRP2 MUTATED" "XIRP2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"XIRP2 WILD-TYPE"   "XIRP2 MUTATED"   "XIRP2 MUTATED" "XIRP2 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "XIRP2 MUTATED" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE"   "XIRP2 MUTATED" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE"   "XIRP2 MUTATED" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"XIRP2 WILD-TYPE"   "XIRP2 MUTATED" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "XIRP2 MUTATED" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
  "XIRP2 MUTATED" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE"   "XIRP2 MUTATED" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
  "XIRP2 MUTATED"   "XIRP2 MUTATED"   "XIRP2 MUTATED" "XIRP2 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE"   "XIRP2 MUTATED" "XIRP2 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
  "XIRP2 MUTATED" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE"   "XIRP2 MUTATED" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"XIRP2 WILD-TYPE"   "XIRP2 MUTATED" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE"   "XIRP2 MUTATED" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE"   "XIRP2 MUTATED" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
  "XIRP2 MUTATED"   "XIRP2 MUTATED" "XIRP2 WILD-TYPE"   "XIRP2 MUTATED" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
  "XIRP2 MUTATED"   "XIRP2 MUTATED" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"XIRP2 WILD-TYPE"   "XIRP2 MUTATED"   "XIRP2 MUTATED"   "XIRP2 MUTATED" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE"   "XIRP2 MUTATED"   "XIRP2 MUTATED" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"XIRP2 WILD-TYPE"   "XIRP2 MUTATED" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"XIRP2 WILD-TYPE"   "XIRP2 MUTATED" "XIRP2 WILD-TYPE"   "XIRP2 MUTATED" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE"   "XIRP2 MUTATED" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
  "XIRP2 MUTATED"   "XIRP2 MUTATED"   "XIRP2 MUTATED" "XIRP2 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "XIRP2 MUTATED" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"XIRP2 WILD-TYPE"   "XIRP2 MUTATED" "XIRP2 WILD-TYPE"   "XIRP2 MUTATED" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"XIRP2 WILD-TYPE"   "XIRP2 MUTATED" "XIRP2 WILD-TYPE"   "XIRP2 MUTATED" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
[1] "hr=" "1.3"
D150V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  XIRP2 MUTATED          8       18         4         6          5          3
  XIRP2 WILD-TYPE       29       35         7        17         28          3
                 vv
clus              STAGE IV
  XIRP2 MUTATED          3
  XIRP2 WILD-TYPE        6
D150V3, multiclass
                 vv
clus              T1 T2 T3 T4
  XIRP2 MUTATED    8 33  3  3
  XIRP2 WILD-TYPE 33 76 11  5
D150V4, multiclass
    clus
vv   XIRP2 MUTATED XIRP2 WILD-TYPE
  T1             8              33
  T2            33              76
  T3             3              11
  T4             3               5
                 vv
clus              N0 N1 N2+N3
  XIRP2 MUTATED   27 12     7
  XIRP2 WILD-TYPE 68 25    28
D150V5, multiclass
       clus
vv      XIRP2 MUTATED XIRP2 WILD-TYPE
  N0               27              68
  N1               12              25
  N2+N3             7              28
                 vv
clus               M0  M1  MX
  XIRP2 MUTATED    40   3   4
  XIRP2 WILD-TYPE 103   6  14
D150V6, multiclass
    clus
vv   XIRP2 MUTATED XIRP2 WILD-TYPE
  M0            40             103
  M1             3               6
  MX             4              14
D150V7, binary
                 cls
clus               0  1
  XIRP2 MUTATED   23 24
  XIRP2 WILD-TYPE 70 55
[1] "tbl2"
                 cls
clus              [,1] [,2]
  XIRP2 MUTATED     23   24
  XIRP2 WILD-TYPE   70   55
        clus
vv       XIRP2 MUTATED XIRP2 WILD-TYPE
  FEMALE            23              70
  MALE              24              55
D150V8, continuous
[1] "Remove cluster labels:" "XIRP2 MUTATED"         
clus
  XIRP2 MUTATED XIRP2 WILD-TYPE 
              2              10 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4662      TCGA-73-4668 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
     TCGA-73-4676      TCGA-75-5122 
"XIRP2 WILD-TYPE" "XIRP2 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  XIRP2 MUTATED                            1                                16
  XIRP2 WILD-TYPE                          1                                23
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  XIRP2 MUTATED                                                   26
  XIRP2 WILD-TYPE                                                 89
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  XIRP2 MUTATED                                            0
  XIRP2 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  XIRP2 MUTATED                                               1
  XIRP2 WILD-TYPE                                             1
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  XIRP2 MUTATED                                0
  XIRP2 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  XIRP2 MUTATED                                    0
  XIRP2 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  XIRP2 MUTATED                              0                             2
  XIRP2 WILD-TYPE                            2                             2
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  XIRP2 MUTATED                                               0
  XIRP2 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  XIRP2 MUTATED                              1
  XIRP2 WILD-TYPE                            1
D150V9, multiclass
D150V10, binary
                 cls
clus                0   1
  XIRP2 MUTATED     5  42
  XIRP2 WILD-TYPE   9 116
[1] "tbl2"
                 cls
clus              [,1] [,2]
  XIRP2 MUTATED      5   42
  XIRP2 WILD-TYPE    9  116
     clus
vv    XIRP2 MUTATED XIRP2 WILD-TYPE
  NO              5               9
  YES            42             116
D150V11, continuous
D150V12, continuous
                 vv
clus              R0 R1 R2 RX
  XIRP2 MUTATED   35  2  1  1
  XIRP2 WILD-TYPE 80  4  3  8
D150V13, multiclass
    clus
vv   XIRP2 MUTATED XIRP2 WILD-TYPE
  R0            35              80
  R1             2               4
  R2             1               3
  RX             1               8

Clustering(151) Variable = PTH MUTATION ANALYSIS
D151V1, survival
               sevent
clus2            0  1
  PTH MUTATED    1  2
  PTH WILD-TYPE 98 54
  PTH MUTATED PTH WILD-TYPE 
            3           152 
  PTH MUTATED PTH WILD-TYPE 
            2            54 
$`PTH MUTATED`
TCGA-05-4415 TCGA-44-2657 TCGA-49-4505 
        2.96        13.15        14.07 

$`PTH WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 
       15.02         4.96        28.96        22.03         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        97.74       120.79 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       14.73        21.93        46.98        44.94        24.36        42.08 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       42.77         3.19         8.09        37.15        38.24        23.51 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21        23.74        13.71        12.59        13.38        10.78 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93        27.78        11.90         5.42        12.16        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       12.66        35.54        46.72        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
        5.16        55.89        15.02        12.13        29.26        17.13 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        70.55        14.96        25.81        31.04 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12        18.64        29.00        25.12 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       22.55        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        87.98         2.04        42.90        28.41 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       51.25        28.44         0.99        20.02        18.84        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
       12.66         5.69         4.60        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        26.27        15.35         4.27         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        5.39         1.25        12.36        10.62        41.33        10.16 
TCGA-91-6835 TCGA-91-6836 
        2.60        13.71 

  PTH MUTATED PTH WILD-TYPE 
         2.96          0.07 
  PTH MUTATED PTH WILD-TYPE 
        14.07        120.79 
  PTH MUTATED PTH WILD-TYPE 
        13.15         21.70 
[1] "3.0 - 14.1 (13.2)"  "0.1 - 120.8 (21.7)"
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"PTH WILD-TYPE" "PTH WILD-TYPE"   "PTH MUTATED" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428    TCGA-05-5429 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"PTH WILD-TYPE"   "PTH MUTATED" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"PTH WILD-TYPE" "PTH WILD-TYPE"   "PTH MUTATED" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-86-6562 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-91-6828    TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"PTH WILD-TYPE" "PTH WILD-TYPE"   "PTH MUTATED" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428    TCGA-05-5429 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"PTH WILD-TYPE"   "PTH MUTATED" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"PTH WILD-TYPE" "PTH WILD-TYPE"   "PTH MUTATED" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-86-6562 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-91-6828    TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"PTH WILD-TYPE" "PTH WILD-TYPE"   "PTH MUTATED" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428    TCGA-05-5429 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"PTH WILD-TYPE"   "PTH MUTATED" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"PTH WILD-TYPE" "PTH WILD-TYPE"   "PTH MUTATED" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-86-6562 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-91-6828    TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
[1] "hr=" "5.4"
D151V2, continuous
               vv
clus            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  PTH MUTATED          0        1         0         1          0          1
  PTH WILD-TYPE       37       52        11        22         33          5
               vv
clus            STAGE IV
  PTH MUTATED          0
  PTH WILD-TYPE        9
D151V3, multiclass
               vv
clus             T1  T2  T3  T4
  PTH MUTATED     0   2   0   1
  PTH WILD-TYPE  41 107  14   7
D151V4, multiclass
    clus
vv   PTH MUTATED PTH WILD-TYPE
  T1           0            41
  T2           2           107
  T3           0            14
  T4           1             7
               vv
clus            N0 N1 N2+N3
  PTH MUTATED    0  1     1
  PTH WILD-TYPE 95 36    34
D151V5, multiclass
[1] "Remove cluster labels:" "PTH MUTATED"           
clus
  PTH MUTATED PTH WILD-TYPE 
            2           165 
   TCGA-05-4244    TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4389    TCGA-05-4390    TCGA-05-4395    TCGA-05-4396    TCGA-05-4397 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4398    TCGA-05-4403    TCGA-05-4405    TCGA-05-4410    TCGA-05-4417 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4418    TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4426    TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-5429    TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-35-5375    TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-38-4629    TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-2655    TCGA-44-2656    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-6144 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6145    TCGA-44-6146    TCGA-44-6148    TCGA-44-6774    TCGA-44-6775 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6776    TCGA-44-6778    TCGA-44-6779    TCGA-49-4486    TCGA-49-4487 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-4488    TCGA-49-4490    TCGA-49-4494    TCGA-49-4501    TCGA-49-4506 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-4507    TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-6743    TCGA-49-6744    TCGA-49-6745    TCGA-49-6767    TCGA-50-5044 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5045    TCGA-50-5049    TCGA-50-5051    TCGA-50-5055    TCGA-50-5066 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5068    TCGA-50-5072    TCGA-50-5930    TCGA-50-5931    TCGA-50-5932 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5933    TCGA-50-5935    TCGA-50-5936    TCGA-50-5939    TCGA-50-5941 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5942    TCGA-50-5944    TCGA-50-5946    TCGA-50-6590    TCGA-50-6591 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-6592    TCGA-50-6593    TCGA-50-6594    TCGA-50-6595    TCGA-50-6597 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-55-1592    TCGA-55-1594    TCGA-55-1595    TCGA-55-1596    TCGA-55-5899 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-55-6543    TCGA-55-6642    TCGA-55-6712    TCGA-64-1676    TCGA-64-1677 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-64-1678    TCGA-64-1680    TCGA-64-5774    TCGA-64-5775    TCGA-64-5778 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-64-5779    TCGA-64-5781    TCGA-64-5815    TCGA-67-3770    TCGA-67-3771 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-67-3772    TCGA-67-3773    TCGA-67-3774    TCGA-67-4679    TCGA-67-6215 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-67-6216    TCGA-67-6217    TCGA-71-6725    TCGA-73-4658    TCGA-73-4659 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-73-4662    TCGA-73-4666    TCGA-73-4668    TCGA-73-4670    TCGA-73-4675 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-73-4676    TCGA-73-4677    TCGA-75-5122    TCGA-75-5125    TCGA-75-5126 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-75-5146    TCGA-75-5147    TCGA-75-6203    TCGA-75-6205    TCGA-75-6206 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-75-6207    TCGA-75-6211    TCGA-75-6212    TCGA-80-5611    TCGA-86-6562 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-91-6828    TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
               vv
clus             M0  M1  MX
  PTH MUTATED     3   0   0
  PTH WILD-TYPE 140   9  18
D151V6, multiclass
    clus
vv   PTH MUTATED PTH WILD-TYPE
  M0           3           140
  M1           0             9
  MX           0            18
D151V7, binary
               cls
clus             0  1
  PTH MUTATED    2  1
  PTH WILD-TYPE 91 78
[1] "tbl2"
               cls
clus            [,1] [,2]
  PTH MUTATED      2    1
  PTH WILD-TYPE   91   78
        clus
vv       PTH MUTATED PTH WILD-TYPE
  FEMALE           2            91
  MALE             1            78
D151V8, continuous
               vv
clus            LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  PTH MUTATED                            0                                 1
  PTH WILD-TYPE                          2                                38
               vv
clus            LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  PTH MUTATED                                                    2
  PTH WILD-TYPE                                                113
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  PTH MUTATED                                            0
  PTH WILD-TYPE                                          1
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  PTH MUTATED                                               0
  PTH WILD-TYPE                                             2
               vv
clus            LUNG CLEAR CELL ADENOCARCINOMA
  PTH MUTATED                                0
  PTH WILD-TYPE                              2
               vv
clus            LUNG MICROPAPILLARY ADENOCARCINOMA LUNG MUCINOUS ADENOCARCINOMA
  PTH MUTATED                                    0                            0
  PTH WILD-TYPE                                  2                            2
               vv
clus            LUNG PAPILLARY ADENOCARCINOMA
  PTH MUTATED                               0
  PTH WILD-TYPE                             4
               vv
clus            LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  PTH MUTATED                                               0
  PTH WILD-TYPE                                             1
               vv
clus            MUCINOUS (COLLOID) CARCINOMA
  PTH MUTATED                              0
  PTH WILD-TYPE                            2
D151V9, multiclass
D151V10, binary
               cls
clus              0   1
  PTH MUTATED     0   3
  PTH WILD-TYPE  14 155
[1] "tbl2"
               cls
clus            [,1] [,2]
  PTH MUTATED      0    3
  PTH WILD-TYPE   14  155
     clus
vv    PTH MUTATED PTH WILD-TYPE
  NO            0            14
  YES           3           155
D151V11, continuous
D151V12, continuous
               vv
clus             R0  R1  R2  RX
  PTH MUTATED     3   0   0   0
  PTH WILD-TYPE 112   6   4   9
D151V13, multiclass
    clus
vv   PTH MUTATED PTH WILD-TYPE
  R0           3           112
  R1           0             6
  R2           0             4
  RX           0             9

Clustering(152) Variable = STAC3 MUTATION ANALYSIS
D152V1, survival
                 sevent
clus2              0  1
  STAC3 MUTATED    1  2
  STAC3 WILD-TYPE 98 54
  STAC3 MUTATED STAC3 WILD-TYPE 
              3             152 
  STAC3 MUTATED STAC3 WILD-TYPE 
              2              54 
$`STAC3 MUTATED`
TCGA-05-4396 TCGA-05-4434 TCGA-91-6836 
        9.96        15.02        13.71 

$`STAC3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-5420 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        4.96        28.96        22.03         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61        14.73 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       21.93        46.98        13.15        44.94        24.36        42.08 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       42.77         3.19         8.09        37.15        38.24        23.51 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21        23.74        13.71        12.59        13.38        10.78 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93        27.78        11.90         5.42        12.16        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46         5.16        55.89        15.02        12.13        29.26 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
       17.13        20.48        71.47        70.55        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       31.04        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12        18.64        29.00 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       25.12        22.55        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        87.98         2.04        42.90 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       28.41        51.25        28.44         0.99        20.02        18.84 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
       14.04        12.66         5.69         4.60        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        26.27        15.35         4.27 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 
        1.32         5.39         1.25        12.36        10.62        41.33 
TCGA-91-6831 TCGA-91-6835 
       10.16         2.60 

  STAC3 MUTATED STAC3 WILD-TYPE 
           9.96            0.07 
  STAC3 MUTATED STAC3 WILD-TYPE 
          15.02          120.79 
  STAC3 MUTATED STAC3 WILD-TYPE 
          13.71           21.70 
[1] "10.0 - 15.0 (13.7)" "0.1 - 120.8 (21.7)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE"   "STAC3 MUTATED" "STAC3 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
  "STAC3 MUTATED" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE"   "STAC3 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE"   "STAC3 MUTATED" "STAC3 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
  "STAC3 MUTATED" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE"   "STAC3 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE"   "STAC3 MUTATED" "STAC3 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
  "STAC3 MUTATED" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE"   "STAC3 MUTATED" 
[1] "hr=" "4"  
D152V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  STAC3 MUTATED          0        1         0         0          0          1
  STAC3 WILD-TYPE       37       52        11        23         33          5
                 vv
clus              STAGE IV
  STAC3 MUTATED          1
  STAC3 WILD-TYPE        8
D152V3, multiclass
                 vv
clus               T1  T2  T3  T4
  STAC3 MUTATED     0   1   0   2
  STAC3 WILD-TYPE  41 108  14   6
D152V4, multiclass
    clus
vv   STAC3 MUTATED STAC3 WILD-TYPE
  T1             0              41
  T2             1             108
  T3             0              14
  T4             2               6
                 vv
clus              N0 N1 N2+N3
  STAC3 MUTATED    1  2     0
  STAC3 WILD-TYPE 94 35    35
D152V5, multiclass
       clus
vv      STAC3 MUTATED STAC3 WILD-TYPE
  N0                1              94
  N1                2              35
  N2+N3             0              35
                 vv
clus               M0  M1  MX
  STAC3 MUTATED     1   1   1
  STAC3 WILD-TYPE 142   8  17
D152V6, multiclass
    clus
vv   STAC3 MUTATED STAC3 WILD-TYPE
  M0             1             142
  M1             1               8
  MX             1              17
D152V7, binary
                 cls
clus               0  1
  STAC3 MUTATED    2  1
  STAC3 WILD-TYPE 91 78
[1] "tbl2"
                 cls
clus              [,1] [,2]
  STAC3 MUTATED      2    1
  STAC3 WILD-TYPE   91   78
        clus
vv       STAC3 MUTATED STAC3 WILD-TYPE
  FEMALE             2              91
  MALE               1              78
D152V8, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  STAC3 MUTATED                            0                                 2
  STAC3 WILD-TYPE                          2                                37
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  STAC3 MUTATED                                                    1
  STAC3 WILD-TYPE                                                114
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  STAC3 MUTATED                                            0
  STAC3 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  STAC3 MUTATED                                               0
  STAC3 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  STAC3 MUTATED                                0
  STAC3 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  STAC3 MUTATED                                    0
  STAC3 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  STAC3 MUTATED                              0                             0
  STAC3 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  STAC3 MUTATED                                               0
  STAC3 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  STAC3 MUTATED                              0
  STAC3 WILD-TYPE                            2
D152V9, multiclass
D152V10, binary
                 cls
clus                0   1
  STAC3 MUTATED     0   3
  STAC3 WILD-TYPE  14 155
[1] "tbl2"
                 cls
clus              [,1] [,2]
  STAC3 MUTATED      0    3
  STAC3 WILD-TYPE   14  155
     clus
vv    STAC3 MUTATED STAC3 WILD-TYPE
  NO              0              14
  YES             3             155
D152V11, continuous
D152V12, continuous
[1] "Remove cluster labels:" "STAC3 MUTATED"         
clus
  STAC3 MUTATED STAC3 WILD-TYPE 
              2              66 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4405      TCGA-05-4410 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4424      TCGA-05-4427 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4433      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-5428      TCGA-35-4122      TCGA-35-4123      TCGA-35-5375 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-38-4625      TCGA-38-4626      TCGA-44-2655      TCGA-44-2656 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2662      TCGA-44-2666 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5645      TCGA-44-6144      TCGA-44-6145 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6147      TCGA-44-6148      TCGA-44-6774      TCGA-44-6775 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6776      TCGA-44-6777      TCGA-44-6778      TCGA-44-6779 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-4486      TCGA-49-4494      TCGA-49-4505      TCGA-55-1592 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1595      TCGA-55-1596      TCGA-55-5899 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-55-6642      TCGA-55-6712      TCGA-64-1677      TCGA-64-1678 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-73-4659      TCGA-73-4662 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4668      TCGA-73-4670      TCGA-73-4675 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-73-4676      TCGA-91-6829 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
                 vv
clus               R0  R1  R2  RX
  STAC3 MUTATED     1   0   1   0
  STAC3 WILD-TYPE 114   6   3   9
D152V13, multiclass
[1] "Remove cluster labels:" "STAC3 MUTATED"         
clus
  STAC3 MUTATED STAC3 WILD-TYPE 
              2             132 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-05-4382 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4384      TCGA-05-4389      TCGA-05-4390      TCGA-05-4395 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4397      TCGA-05-4398      TCGA-05-4402      TCGA-05-4403 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4405      TCGA-05-4410      TCGA-05-4415      TCGA-05-4417 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4422      TCGA-05-4424 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4425      TCGA-05-4426      TCGA-05-4427      TCGA-05-4430 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4432      TCGA-05-4433      TCGA-05-5420      TCGA-05-5423 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-5425      TCGA-05-5428      TCGA-05-5429      TCGA-05-5715 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-35-3615      TCGA-35-4122      TCGA-35-4123      TCGA-35-5375 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-38-4625      TCGA-38-4626      TCGA-38-4627      TCGA-38-4628 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-38-4629      TCGA-38-4630      TCGA-38-4631      TCGA-38-4632 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-38-6178      TCGA-44-2655      TCGA-44-2657      TCGA-44-2659 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-6144      TCGA-44-6148 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6775      TCGA-49-4486      TCGA-49-4487      TCGA-49-4488 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-4494      TCGA-49-4501      TCGA-49-4505      TCGA-49-4506 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-4507      TCGA-49-4510      TCGA-49-4512      TCGA-49-4514 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-6742      TCGA-49-6744      TCGA-49-6767      TCGA-50-5051 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5055      TCGA-50-5066      TCGA-50-5931      TCGA-50-5942 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-6593      TCGA-50-6597      TCGA-55-1592 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1596      TCGA-55-5899      TCGA-55-6642 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-67-3773      TCGA-67-3774      TCGA-67-4679      TCGA-67-6215 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-75-5122      TCGA-75-5125      TCGA-75-5126      TCGA-75-5146 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-75-5147      TCGA-75-6203      TCGA-75-6205      TCGA-75-6206 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-75-6207      TCGA-75-6211      TCGA-75-6212      TCGA-80-5611 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-86-6562      TCGA-91-6828      TCGA-91-6829      TCGA-91-6835 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 

Clustering(153) Variable = IL18RAP MUTATION ANALYSIS
D153V1, survival
                   sevent
clus2                0  1
  IL18RAP MUTATED    0  5
  IL18RAP WILD-TYPE 99 51
  IL18RAP MUTATED IL18RAP WILD-TYPE 
                5               150 
  IL18RAP MUTATED IL18RAP WILD-TYPE 
                5                51 
$`IL18RAP MUTATED`
TCGA-05-4397 TCGA-38-4632 TCGA-44-2668 TCGA-50-5068 TCGA-50-5931 
       24.03        44.61         8.09        49.28         8.78 

$`IL18RAP WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
        9.96        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 
       15.02         4.96        28.96        22.03         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        97.74       120.79 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 
       37.71        49.02        28.37        35.28        11.64        14.73 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       21.93        46.98        13.15        44.94        24.36        42.08 
TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
       42.77         3.19        37.15        38.24        23.51         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
       23.74        13.71        12.59        13.38        10.78         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
       27.78        11.90         5.42        12.16        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
        5.16        55.89        15.02        12.13        29.26        17.13 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        70.55        14.96        25.81        31.04 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        8.05         9.27        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12        18.64        29.00        25.12        22.55        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       87.98         2.04        42.90        28.41        51.25        28.44 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99        20.02        18.84        14.04        12.66         5.69 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        4.60        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       26.27        15.35         4.27         1.32         5.39         1.25 
TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       12.36        10.62        41.33        10.16         2.60        13.71 

  IL18RAP MUTATED IL18RAP WILD-TYPE 
             8.09              0.07 
  IL18RAP MUTATED IL18RAP WILD-TYPE 
            49.28            120.79 
  IL18RAP MUTATED IL18RAP WILD-TYPE 
           24.030            20.565 
[1] "8.1 - 49.3 (24.0)"  "0.1 - 120.8 (20.6)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE"   "IL18RAP MUTATED" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE"   "IL18RAP MUTATED" "IL18RAP WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
  "IL18RAP MUTATED" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"IL18RAP WILD-TYPE"   "IL18RAP MUTATED" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
  "IL18RAP MUTATED" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE"   "IL18RAP MUTATED" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE"   "IL18RAP MUTATED" "IL18RAP WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
  "IL18RAP MUTATED" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"IL18RAP WILD-TYPE"   "IL18RAP MUTATED" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
  "IL18RAP MUTATED" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE"   "IL18RAP MUTATED" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE"   "IL18RAP MUTATED" "IL18RAP WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
  "IL18RAP MUTATED" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"IL18RAP WILD-TYPE"   "IL18RAP MUTATED" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
  "IL18RAP MUTATED" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
[1] "hr=" "2.5"
D153V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  IL18RAP MUTATED          0        2         0         2          0          0
  IL18RAP WILD-TYPE       37       51        11        21         33          6
                   vv
clus                STAGE IV
  IL18RAP MUTATED          1
  IL18RAP WILD-TYPE        8
D153V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  IL18RAP MUTATED     0   5   0   0
  IL18RAP WILD-TYPE  41 104  14   8
D153V4, multiclass
    clus
vv   IL18RAP MUTATED IL18RAP WILD-TYPE
  T1               0                41
  T2               5               104
  T3               0                14
  T4               0                 8
                   vv
clus                N0 N1 N2+N3
  IL18RAP MUTATED    2  3     0
  IL18RAP WILD-TYPE 93 34    35
D153V5, multiclass
       clus
vv      IL18RAP MUTATED IL18RAP WILD-TYPE
  N0                  2                93
  N1                  3                34
  N2+N3               0                35
                   vv
clus                 M0  M1  MX
  IL18RAP MUTATED     3   1   1
  IL18RAP WILD-TYPE 140   8  17
D153V6, multiclass
    clus
vv   IL18RAP MUTATED IL18RAP WILD-TYPE
  M0               3               140
  M1               1                 8
  MX               1                17
D153V7, binary
                   cls
clus                 0  1
  IL18RAP MUTATED    2  3
  IL18RAP WILD-TYPE 91 76
[1] "tbl2"
                   cls
clus                [,1] [,2]
  IL18RAP MUTATED      2    3
  IL18RAP WILD-TYPE   91   76
        clus
vv       IL18RAP MUTATED IL18RAP WILD-TYPE
  FEMALE               2                91
  MALE                 3                76
D153V8, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  IL18RAP MUTATED                            0
  IL18RAP WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  IL18RAP MUTATED                                   1
  IL18RAP WILD-TYPE                                38
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  IL18RAP MUTATED                                                    4
  IL18RAP WILD-TYPE                                                111
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  IL18RAP MUTATED                                            0
  IL18RAP WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  IL18RAP MUTATED                                               0
  IL18RAP WILD-TYPE                                             2
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  IL18RAP MUTATED                                0
  IL18RAP WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  IL18RAP MUTATED                                    0
  IL18RAP WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  IL18RAP MUTATED                              0                             0
  IL18RAP WILD-TYPE                            2                             4
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  IL18RAP MUTATED                                               0
  IL18RAP WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  IL18RAP MUTATED                              0
  IL18RAP WILD-TYPE                            2
D153V9, multiclass
D153V10, binary
                   cls
clus                  0   1
  IL18RAP MUTATED     0   5
  IL18RAP WILD-TYPE  14 153
[1] "tbl2"
                   cls
clus                [,1] [,2]
  IL18RAP MUTATED      0    5
  IL18RAP WILD-TYPE   14  153
     clus
vv    IL18RAP MUTATED IL18RAP WILD-TYPE
  NO                0                14
  YES               5               153
D153V11, continuous
D153V12, continuous
[1] "Remove cluster labels:" "IL18RAP MUTATED"       
clus
  IL18RAP MUTATED IL18RAP WILD-TYPE 
                1                67 
       TCGA-05-4384        TCGA-05-4390        TCGA-05-4396        TCGA-05-4405 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-05-4410        TCGA-05-4415        TCGA-05-4417        TCGA-05-4424 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4433        TCGA-05-5420        TCGA-05-5423 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-05-5425        TCGA-05-5428        TCGA-35-4122        TCGA-35-4123 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-35-5375        TCGA-38-4625        TCGA-38-4626        TCGA-44-2655 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2662 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-44-2666        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4494        TCGA-49-4505        TCGA-55-1592 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-55-1594        TCGA-55-1595        TCGA-55-1596        TCGA-55-5899 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-64-1677        TCGA-64-1678 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-73-4659        TCGA-73-4662 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-73-4676        TCGA-91-6829        TCGA-91-6836 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
                   vv
clus                 R0  R1  R2  RX
  IL18RAP MUTATED     4   0   0   0
  IL18RAP WILD-TYPE 111   6   4   9
D153V13, multiclass
    clus
vv   IL18RAP MUTATED IL18RAP WILD-TYPE
  R0               4               111
  R1               0                 6
  R2               0                 4
  RX               0                 9

Clustering(154) Variable = TAAR5 MUTATION ANALYSIS
D154V1, survival
                 sevent
clus2              0  1
  TAAR5 MUTATED    6  1
  TAAR5 WILD-TYPE 93 55
  TAAR5 MUTATED TAAR5 WILD-TYPE 
              7             148 
  TAAR5 MUTATED TAAR5 WILD-TYPE 
              1              55 
$`TAAR5 MUTATED`
TCGA-05-4403 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-44-6774 TCGA-73-4658 
       19.00         5.95         8.68        97.74         5.42        52.57 
TCGA-73-4666 
       26.27 

$`TAAR5 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 
        9.96        24.03        47.05         8.02        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 
       15.02         4.96        28.96        22.03         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        0.46         7.36       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61        14.73        21.93        46.98 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        44.94        24.36        42.08        42.77         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        37.15        38.24        23.51         6.21        23.74 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       13.71        12.59        13.38        10.78         9.93        27.78 
TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
       11.90        12.16        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46         5.16        55.89 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        29.26        17.13        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       70.55        14.96        25.81        31.04        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12        18.64        29.00        25.12        22.55        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       87.98         2.04        42.90        28.41        51.25        28.44 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99        20.02        18.84        14.04        12.66         5.69 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 
        4.60        13.87         2.01        23.38        29.95        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 
        4.27         1.32         5.39         1.25        12.36        10.62 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33        10.16         2.60        13.71 

  TAAR5 MUTATED TAAR5 WILD-TYPE 
           5.42            0.07 
  TAAR5 MUTATED TAAR5 WILD-TYPE 
          97.74          120.79 
  TAAR5 MUTATED TAAR5 WILD-TYPE 
          19.00           21.06 
[1] "5.4 - 97.7 (19.0)"  "0.1 - 120.8 (21.1)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE"   "TAAR5 MUTATED" "TAAR5 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"TAAR5 WILD-TYPE"   "TAAR5 MUTATED"   "TAAR5 MUTATED"   "TAAR5 MUTATED" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"TAAR5 WILD-TYPE"   "TAAR5 MUTATED" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
  "TAAR5 MUTATED" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE"   "TAAR5 MUTATED" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE"   "TAAR5 MUTATED" "TAAR5 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"TAAR5 WILD-TYPE"   "TAAR5 MUTATED"   "TAAR5 MUTATED"   "TAAR5 MUTATED" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"TAAR5 WILD-TYPE"   "TAAR5 MUTATED" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
  "TAAR5 MUTATED" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE"   "TAAR5 MUTATED" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE"   "TAAR5 MUTATED" "TAAR5 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"TAAR5 WILD-TYPE"   "TAAR5 MUTATED"   "TAAR5 MUTATED"   "TAAR5 MUTATED" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"TAAR5 WILD-TYPE"   "TAAR5 MUTATED" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
  "TAAR5 MUTATED" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE"   "TAAR5 MUTATED" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
[1] "hr=" "3.6"
D154V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  TAAR5 MUTATED          1        3         0         0          2          0
  TAAR5 WILD-TYPE       36       50        11        23         31          6
                 vv
clus              STAGE IV
  TAAR5 MUTATED          1
  TAAR5 WILD-TYPE        8
D154V3, multiclass
                 vv
clus               T1  T2  T3  T4
  TAAR5 MUTATED     3   4   0   0
  TAAR5 WILD-TYPE  38 105  14   8
D154V4, multiclass
    clus
vv   TAAR5 MUTATED TAAR5 WILD-TYPE
  T1             3              38
  T2             4             105
  T3             0              14
  T4             0               8
                 vv
clus              N0 N1 N2+N3
  TAAR5 MUTATED    5  0     2
  TAAR5 WILD-TYPE 90 37    33
D154V5, multiclass
       clus
vv      TAAR5 MUTATED TAAR5 WILD-TYPE
  N0                5              90
  N1                0              37
  N2+N3             2              33
                 vv
clus               M0  M1  MX
  TAAR5 MUTATED     6   1   0
  TAAR5 WILD-TYPE 137   8  18
D154V6, multiclass
    clus
vv   TAAR5 MUTATED TAAR5 WILD-TYPE
  M0             6             137
  M1             1               8
  MX             0              18
D154V7, binary
                 cls
clus               0  1
  TAAR5 MUTATED    4  3
  TAAR5 WILD-TYPE 89 76
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TAAR5 MUTATED      4    3
  TAAR5 WILD-TYPE   89   76
        clus
vv       TAAR5 MUTATED TAAR5 WILD-TYPE
  FEMALE             4              89
  MALE               3              76
D154V8, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  TAAR5 MUTATED                            0                                 1
  TAAR5 WILD-TYPE                          2                                38
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  TAAR5 MUTATED                                                    6
  TAAR5 WILD-TYPE                                                109
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  TAAR5 MUTATED                                            0
  TAAR5 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  TAAR5 MUTATED                                               0
  TAAR5 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  TAAR5 MUTATED                                0
  TAAR5 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  TAAR5 MUTATED                                    0
  TAAR5 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  TAAR5 MUTATED                              0                             0
  TAAR5 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  TAAR5 MUTATED                                               0
  TAAR5 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  TAAR5 MUTATED                              0
  TAAR5 WILD-TYPE                            2
D154V9, multiclass
D154V10, binary
                 cls
clus                0   1
  TAAR5 MUTATED     1   6
  TAAR5 WILD-TYPE  13 152
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TAAR5 MUTATED      1    6
  TAAR5 WILD-TYPE   13  152
     clus
vv    TAAR5 MUTATED TAAR5 WILD-TYPE
  NO              1              13
  YES             6             152
D154V11, continuous
D154V12, continuous
                 vv
clus               R0  R1  R2  RX
  TAAR5 MUTATED     6   0   0   0
  TAAR5 WILD-TYPE 109   6   4   9
D154V13, multiclass
    clus
vv   TAAR5 MUTATED TAAR5 WILD-TYPE
  R0             6             109
  R1             0               6
  R2             0               4
  RX             0               9

Clustering(155) Variable = C2ORF39 MUTATION ANALYSIS
D155V1, survival
                   sevent
clus2                0  1
  C2ORF39 MUTATED    4  2
  C2ORF39 WILD-TYPE 95 54
  C2ORF39 MUTATED C2ORF39 WILD-TYPE 
                6               149 
  C2ORF39 MUTATED C2ORF39 WILD-TYPE 
                2                54 
$`C2ORF39 MUTATED`
TCGA-05-4382 TCGA-05-4389 TCGA-44-2655 TCGA-44-3918 TCGA-55-1592 TCGA-64-1677 
       19.92        45.01        21.93        23.51        23.05        20.65 

$`C2ORF39 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       50.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        4.96        28.96        22.03         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61        14.73 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       46.98        13.15        44.94        24.36        42.08        42.77 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 
        3.19         8.09        37.15        38.24         6.21        23.74 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       13.71        12.59        13.38        10.78         9.93        27.78 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
       11.90         5.42        12.16        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46         5.16 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       55.89        15.02        12.13        29.26        17.13        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        70.55        14.96        25.81        31.04        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12        18.64        29.00        25.12        22.55 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       33.37        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
       32.61         0.79        56.81        39.09        37.02        87.98 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        2.04        42.90        28.41        51.25        28.44         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       20.02        18.84        14.04        12.66         5.69         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        26.27 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 
       15.35         4.27         1.32         5.39         1.25        12.36 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       10.62        41.33        10.16         2.60        13.71 

  C2ORF39 MUTATED C2ORF39 WILD-TYPE 
            19.92              0.07 
  C2ORF39 MUTATED C2ORF39 WILD-TYPE 
            45.01            120.79 
  C2ORF39 MUTATED C2ORF39 WILD-TYPE 
            22.49             20.05 
[1] "19.9 - 45.0 (22.5)" "0.1 - 120.8 (20.1)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE"   "C2ORF39 MUTATED" "C2ORF39 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
  "C2ORF39 MUTATED" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
  "C2ORF39 MUTATED" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE"   "C2ORF39 MUTATED" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"C2ORF39 WILD-TYPE"   "C2ORF39 MUTATED" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE"   "C2ORF39 MUTATED" "C2ORF39 WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE"   "C2ORF39 MUTATED" "C2ORF39 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
  "C2ORF39 MUTATED" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
  "C2ORF39 MUTATED" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE"   "C2ORF39 MUTATED" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"C2ORF39 WILD-TYPE"   "C2ORF39 MUTATED" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE"   "C2ORF39 MUTATED" "C2ORF39 WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE"   "C2ORF39 MUTATED" "C2ORF39 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
  "C2ORF39 MUTATED" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
  "C2ORF39 MUTATED" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE"   "C2ORF39 MUTATED" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"C2ORF39 WILD-TYPE"   "C2ORF39 MUTATED" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE"   "C2ORF39 MUTATED" "C2ORF39 WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
[1] "hr=" "1"  
D155V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  C2ORF39 MUTATED          4        2         0         0          2          0
  C2ORF39 WILD-TYPE       33       51        11        23         31          6
                   vv
clus                STAGE IV
  C2ORF39 MUTATED          0
  C2ORF39 WILD-TYPE        9
D155V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  C2ORF39 MUTATED     3   4   1   0
  C2ORF39 WILD-TYPE  38 105  13   8
D155V4, multiclass
    clus
vv   C2ORF39 MUTATED C2ORF39 WILD-TYPE
  T1               3                38
  T2               4               105
  T3               1                13
  T4               0                 8
                   vv
clus                N0 N1 N2+N3
  C2ORF39 MUTATED    6  0     2
  C2ORF39 WILD-TYPE 89 37    33
D155V5, multiclass
       clus
vv      C2ORF39 MUTATED C2ORF39 WILD-TYPE
  N0                  6                89
  N1                  0                37
  N2+N3               2                33
                   vv
clus                 M0  M1  MX
  C2ORF39 MUTATED     8   0   0
  C2ORF39 WILD-TYPE 135   9  18
D155V6, multiclass
    clus
vv   C2ORF39 MUTATED C2ORF39 WILD-TYPE
  M0               8               135
  M1               0                 9
  MX               0                18
D155V7, binary
                   cls
clus                 0  1
  C2ORF39 MUTATED    5  3
  C2ORF39 WILD-TYPE 88 76
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C2ORF39 MUTATED      5    3
  C2ORF39 WILD-TYPE   88   76
        clus
vv       C2ORF39 MUTATED C2ORF39 WILD-TYPE
  FEMALE               5                88
  MALE                 3                76
D155V8, continuous
[1] "Remove cluster labels:" "C2ORF39 MUTATED"       
clus
  C2ORF39 MUTATED C2ORF39 WILD-TYPE 
                1                11 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-64-5778 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4676        TCGA-75-5122 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  C2ORF39 MUTATED                            0
  C2ORF39 WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  C2ORF39 MUTATED                                   2
  C2ORF39 WILD-TYPE                                37
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  C2ORF39 MUTATED                                                    5
  C2ORF39 WILD-TYPE                                                110
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  C2ORF39 MUTATED                                            0
  C2ORF39 WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  C2ORF39 MUTATED                                               0
  C2ORF39 WILD-TYPE                                             2
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  C2ORF39 MUTATED                                0
  C2ORF39 WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  C2ORF39 MUTATED                                    0
  C2ORF39 WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  C2ORF39 MUTATED                              0                             1
  C2ORF39 WILD-TYPE                            2                             3
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  C2ORF39 MUTATED                                               0
  C2ORF39 WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  C2ORF39 MUTATED                              0
  C2ORF39 WILD-TYPE                            2
D155V9, multiclass
D155V10, binary
                   cls
clus                  0   1
  C2ORF39 MUTATED     0   8
  C2ORF39 WILD-TYPE  14 150
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C2ORF39 MUTATED      0    8
  C2ORF39 WILD-TYPE   14  150
     clus
vv    C2ORF39 MUTATED C2ORF39 WILD-TYPE
  NO                0                14
  YES               8               150
D155V11, continuous
D155V12, continuous
                   vv
clus                 R0  R1  R2  RX
  C2ORF39 MUTATED     7   0   1   0
  C2ORF39 WILD-TYPE 108   6   3   9
D155V13, multiclass
    clus
vv   C2ORF39 MUTATED C2ORF39 WILD-TYPE
  R0               7               108
  R1               0                 6
  R2               1                 3
  RX               0                 9

Clustering(156) Variable = OR13G1 MUTATION ANALYSIS
D156V1, survival
                  sevent
clus2               0  1
  OR13G1 MUTATED    7  2
  OR13G1 WILD-TYPE 92 54
  OR13G1 MUTATED OR13G1 WILD-TYPE 
               9              146 
  OR13G1 MUTATED OR13G1 WILD-TYPE 
               2               54 
$`OR13G1 MUTATED`
TCGA-05-4382 TCGA-05-4427 TCGA-38-4625 TCGA-49-4514 TCGA-64-5778 TCGA-64-5781 
       19.92        26.01        97.74        55.89        42.90        51.25 
TCGA-67-3771 TCGA-73-4677 TCGA-91-6829 
       20.02         1.25        41.33 

$`OR13G1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 
       50.07         3.98        14.01        45.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        4.96        28.96        22.03         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        7.36         5.95         8.68       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61        14.73        21.93 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       46.98        13.15        44.94        24.36        42.08        42.77 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        37.15        38.24        23.51         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
       23.74        13.71        12.59        13.38        10.78         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
       27.78        11.90         5.42        12.16        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
        5.16        15.02        12.13        29.26        17.13        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        70.55        14.96        25.81        31.04        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12        18.64        29.00        25.12        22.55 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 
       37.02        87.98         2.04        28.41        28.44         0.99 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
       18.84        14.04        12.66         5.69         4.60        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        26.27        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-86-6562 TCGA-91-6828 TCGA-91-6831 
        4.27         1.32         5.39        12.36        10.62        10.16 
TCGA-91-6835 TCGA-91-6836 
        2.60        13.71 

  OR13G1 MUTATED OR13G1 WILD-TYPE 
            1.25             0.07 
  OR13G1 MUTATED OR13G1 WILD-TYPE 
           97.74           120.79 
  OR13G1 MUTATED OR13G1 WILD-TYPE 
          41.330           20.265 
[1] "1.2 - 97.7 (41.3)"  "0.1 - 120.8 (20.3)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
  "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
  "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
  "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
  "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
  "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"OR13G1 WILD-TYPE"   "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
  "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
  "OR13G1 MUTATED" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE"   "OR13G1 MUTATED" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
[1] "hr=" "3"  
D156V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  OR13G1 MUTATED          3        5         0         1          0          0
  OR13G1 WILD-TYPE       34       48        11        22         33          6
                  vv
clus               STAGE IV
  OR13G1 MUTATED          0
  OR13G1 WILD-TYPE        9
D156V3, multiclass
                  vv
clus                T1  T2  T3  T4
  OR13G1 MUTATED     2   7   0   0
  OR13G1 WILD-TYPE  39 102  14   8
D156V4, multiclass
    clus
vv   OR13G1 MUTATED OR13G1 WILD-TYPE
  T1              2               39
  T2              7              102
  T3              0               14
  T4              0                8
                  vv
clus               N0 N1 N2+N3
  OR13G1 MUTATED    8  1     0
  OR13G1 WILD-TYPE 87 36    35
D156V5, multiclass
       clus
vv      OR13G1 MUTATED OR13G1 WILD-TYPE
  N0                 8               87
  N1                 1               36
  N2+N3              0               35
                  vv
clus                M0  M1  MX
  OR13G1 MUTATED     8   0   1
  OR13G1 WILD-TYPE 135   9  17
D156V6, multiclass
    clus
vv   OR13G1 MUTATED OR13G1 WILD-TYPE
  M0              8              135
  M1              0                9
  MX              1               17
D156V7, binary
                  cls
clus                0  1
  OR13G1 MUTATED    5  4
  OR13G1 WILD-TYPE 88 75
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR13G1 MUTATED      5    4
  OR13G1 WILD-TYPE   88   75
        clus
vv       OR13G1 MUTATED OR13G1 WILD-TYPE
  FEMALE              5               88
  MALE                4               75
D156V8, continuous
[1] "Remove cluster labels:" "OR13G1 MUTATED"        
clus
  OR13G1 MUTATED OR13G1 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR13G1 MUTATED                            0                                 3
  OR13G1 WILD-TYPE                          2                                36
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR13G1 MUTATED                                                    3
  OR13G1 WILD-TYPE                                                112
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR13G1 MUTATED                                            0
  OR13G1 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR13G1 MUTATED                                               2
  OR13G1 WILD-TYPE                                             0
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  OR13G1 MUTATED                                0
  OR13G1 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  OR13G1 MUTATED                                    0
  OR13G1 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR13G1 MUTATED                              0                             1
  OR13G1 WILD-TYPE                            2                             3
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR13G1 MUTATED                                               0
  OR13G1 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  OR13G1 MUTATED                              0
  OR13G1 WILD-TYPE                            2
D156V9, multiclass
D156V10, binary
                  cls
clus                 0   1
  OR13G1 MUTATED     0   9
  OR13G1 WILD-TYPE  14 149
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR13G1 MUTATED      0    9
  OR13G1 WILD-TYPE   14  149
     clus
vv    OR13G1 MUTATED OR13G1 WILD-TYPE
  NO               0               14
  YES              9              149
D156V11, continuous
D156V12, continuous
                  vv
clus                R0  R1  R2  RX
  OR13G1 MUTATED     9   0   0   0
  OR13G1 WILD-TYPE 106   6   4   9
D156V13, multiclass
    clus
vv   OR13G1 MUTATED OR13G1 WILD-TYPE
  R0              9              106
  R1              0                6
  R2              0                4
  RX              0                9

Clustering(157) Variable = OR2G2 MUTATION ANALYSIS
D157V1, survival
                 sevent
clus2              0  1
  OR2G2 MUTATED    7  5
  OR2G2 WILD-TYPE 92 51
  OR2G2 MUTATED OR2G2 WILD-TYPE 
             12             143 
  OR2G2 MUTATED OR2G2 WILD-TYPE 
              5              51 
$`OR2G2 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4432 TCGA-44-2656 TCGA-44-2657 TCGA-44-3918 
       19.92         9.96        25.02        46.98        13.15        23.51 
TCGA-50-5045 TCGA-50-5051 TCGA-55-1592 TCGA-64-5781 TCGA-73-4666 TCGA-91-6829 
       71.47        14.96        23.05        51.25        26.27        41.33 

$`OR2G2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4397 
       50.07         3.98        14.01        45.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       26.01        25.02        24.00        15.02        15.02         4.96 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
       28.96        22.03         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        97.74       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61        14.73        21.93 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       44.94        24.36        42.08        42.77         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
       37.15        38.24         6.21        23.74        13.71        12.59 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
       13.38        10.78         9.93        27.78        11.90         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
       12.16        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46         5.16        55.89        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5049 TCGA-50-5055 
       12.13        29.26        17.13        20.48        70.55        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       31.04        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12        18.64        29.00 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       25.12        22.55        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       12.16         6.21        33.37        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        87.98         2.04        42.90        28.41 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       28.44         0.99        20.02        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        5.69         4.60        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       29.95        15.35         4.27         1.32         5.39         1.25 
TCGA-86-6562 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       12.36        10.62        10.16         2.60        13.71 

  OR2G2 MUTATED OR2G2 WILD-TYPE 
           9.96            0.07 
  OR2G2 MUTATED OR2G2 WILD-TYPE 
          71.47          120.79 
  OR2G2 MUTATED OR2G2 WILD-TYPE 
         24.265          20.050 
[1] "10.0 - 71.5 (24.3)" "0.1 - 120.8 (20.1)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE"   "OR2G2 MUTATED" "OR2G2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE"   "OR2G2 MUTATED" "OR2G2 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE"   "OR2G2 MUTATED" "OR2G2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"OR2G2 WILD-TYPE"   "OR2G2 MUTATED"   "OR2G2 MUTATED" "OR2G2 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE"   "OR2G2 MUTATED" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
  "OR2G2 MUTATED" "OR2G2 WILD-TYPE"   "OR2G2 MUTATED" "OR2G2 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"OR2G2 WILD-TYPE"   "OR2G2 MUTATED" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"OR2G2 WILD-TYPE"   "OR2G2 MUTATED" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE"   "OR2G2 MUTATED" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE"   "OR2G2 MUTATED" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE"   "OR2G2 MUTATED" "OR2G2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE"   "OR2G2 MUTATED" "OR2G2 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE"   "OR2G2 MUTATED" "OR2G2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"OR2G2 WILD-TYPE"   "OR2G2 MUTATED"   "OR2G2 MUTATED" "OR2G2 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE"   "OR2G2 MUTATED" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
  "OR2G2 MUTATED" "OR2G2 WILD-TYPE"   "OR2G2 MUTATED" "OR2G2 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"OR2G2 WILD-TYPE"   "OR2G2 MUTATED" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"OR2G2 WILD-TYPE"   "OR2G2 MUTATED" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE"   "OR2G2 MUTATED" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE"   "OR2G2 MUTATED" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE"   "OR2G2 MUTATED" "OR2G2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE"   "OR2G2 MUTATED" "OR2G2 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE"   "OR2G2 MUTATED" "OR2G2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"OR2G2 WILD-TYPE"   "OR2G2 MUTATED"   "OR2G2 MUTATED" "OR2G2 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE"   "OR2G2 MUTATED" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
  "OR2G2 MUTATED" "OR2G2 WILD-TYPE"   "OR2G2 MUTATED" "OR2G2 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"OR2G2 WILD-TYPE"   "OR2G2 MUTATED" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"OR2G2 WILD-TYPE"   "OR2G2 MUTATED" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE"   "OR2G2 MUTATED" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE"   "OR2G2 MUTATED" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
[1] "hr=" "1.1"
D157V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  OR2G2 MUTATED          3        5         0         1          1          1
  OR2G2 WILD-TYPE       34       48        11        22         32          5
                 vv
clus              STAGE IV
  OR2G2 MUTATED          1
  OR2G2 WILD-TYPE        8
D157V3, multiclass
                 vv
clus               T1  T2  T3  T4
  OR2G2 MUTATED     2   9   0   1
  OR2G2 WILD-TYPE  39 100  14   7
D157V4, multiclass
    clus
vv   OR2G2 MUTATED OR2G2 WILD-TYPE
  T1             2              39
  T2             9             100
  T3             0              14
  T4             1               7
                 vv
clus              N0 N1 N2+N3
  OR2G2 MUTATED    7  3     1
  OR2G2 WILD-TYPE 88 34    34
D157V5, multiclass
       clus
vv      OR2G2 MUTATED OR2G2 WILD-TYPE
  N0                7              88
  N1                3              34
  N2+N3             1              34
                 vv
clus               M0  M1  MX
  OR2G2 MUTATED    10   1   1
  OR2G2 WILD-TYPE 133   8  17
D157V6, multiclass
    clus
vv   OR2G2 MUTATED OR2G2 WILD-TYPE
  M0            10             133
  M1             1               8
  MX             1              17
D157V7, binary
                 cls
clus               0  1
  OR2G2 MUTATED    6  6
  OR2G2 WILD-TYPE 87 73
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2G2 MUTATED      6    6
  OR2G2 WILD-TYPE   87   73
        clus
vv       OR2G2 MUTATED OR2G2 WILD-TYPE
  FEMALE             6              87
  MALE               6              73
D157V8, continuous
[1] "Remove cluster labels:" "OR2G2 MUTATED"         
clus
  OR2G2 MUTATED OR2G2 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4659      TCGA-73-4662 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" "OR2G2 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR2G2 MUTATED                            0                                 4
  OR2G2 WILD-TYPE                          2                                35
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR2G2 MUTATED                                                    7
  OR2G2 WILD-TYPE                                                108
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR2G2 MUTATED                                            0
  OR2G2 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR2G2 MUTATED                                               1
  OR2G2 WILD-TYPE                                             1
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  OR2G2 MUTATED                                0
  OR2G2 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  OR2G2 MUTATED                                    0
  OR2G2 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR2G2 MUTATED                              0                             0
  OR2G2 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR2G2 MUTATED                                               0
  OR2G2 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  OR2G2 MUTATED                              0
  OR2G2 WILD-TYPE                            2
D157V9, multiclass
D157V10, binary
                 cls
clus                0   1
  OR2G2 MUTATED     2  10
  OR2G2 WILD-TYPE  12 148
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2G2 MUTATED      2   10
  OR2G2 WILD-TYPE   12  148
     clus
vv    OR2G2 MUTATED OR2G2 WILD-TYPE
  NO              2              12
  YES            10             148
D157V11, continuous
D157V12, continuous
                 vv
clus               R0  R1  R2  RX
  OR2G2 MUTATED    10   0   0   0
  OR2G2 WILD-TYPE 105   6   4   9
D157V13, multiclass
    clus
vv   OR2G2 MUTATED OR2G2 WILD-TYPE
  R0            10             105
  R1             0               6
  R2             0               4
  RX             0               9

Clustering(158) Variable = ADAMTS2 MUTATION ANALYSIS
D158V1, survival
                   sevent
clus2                0  1
  ADAMTS2 MUTATED    7  5
  ADAMTS2 WILD-TYPE 92 51
  ADAMTS2 MUTATED ADAMTS2 WILD-TYPE 
               12               143 
  ADAMTS2 MUTATED ADAMTS2 WILD-TYPE 
                5                51 
$`ADAMTS2 MUTATED`
TCGA-05-4382 TCGA-05-4390 TCGA-05-4397 TCGA-05-4427 TCGA-44-3396 TCGA-44-4112 
       19.92        37.02        24.03        26.01        37.15        23.74 
TCGA-44-6777 TCGA-50-6593 TCGA-55-6642 TCGA-64-1676 TCGA-73-4659 TCGA-91-6831 
       32.45        11.05        32.61        56.81        23.38        10.16 

$`ADAMTS2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4396 TCGA-05-4398 
       50.07         3.98        14.01        45.01         9.96        47.05 
TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
        8.02        19.00        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4430 
       29.95        12.00        30.02        21.99        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02        15.02         4.96        28.96 
TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
       22.03         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        97.74       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61        14.73        21.93        46.98 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        44.94        24.36        42.08        42.77         3.19 
TCGA-44-2668 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-5643 TCGA-44-5645 
        8.09        38.24        23.51         6.21        13.71        12.59 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
       13.38        10.78         9.93        27.78        11.90         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       12.16        63.72        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46         5.16        55.89        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       29.26        17.13        20.48        71.47        70.55        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81        31.04        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12        18.64 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
       29.00        25.12        22.55        42.31         3.88        25.51 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 
       45.17         2.86         0.07         0.79        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        87.98         2.04        42.90        28.41        51.25 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       28.44         0.99        20.02        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4662 
        5.69         4.60        13.87         2.01        52.57        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       26.27        15.35         4.27         1.32         5.39         1.25 
TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6835 TCGA-91-6836 
       12.36        10.62        41.33         2.60        13.71 

  ADAMTS2 MUTATED ADAMTS2 WILD-TYPE 
            10.16              0.07 
  ADAMTS2 MUTATED ADAMTS2 WILD-TYPE 
            56.81            120.79 
  ADAMTS2 MUTATED ADAMTS2 WILD-TYPE 
            25.02             20.02 
[1] "10.2 - 56.8 (25.0)" "0.1 - 120.8 (20.0)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"ADAMTS2 WILD-TYPE"   "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
  "ADAMTS2 MUTATED" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
[1] "hr=" "1"  
D158V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  ADAMTS2 MUTATED          1        7         0         2          3          1
  ADAMTS2 WILD-TYPE       36       46        11        21         30          5
                   vv
clus                STAGE IV
  ADAMTS2 MUTATED          0
  ADAMTS2 WILD-TYPE        9
D158V3, multiclass
                   vv
clus                T1 T2 T3 T4
  ADAMTS2 MUTATED    2 11  0  1
  ADAMTS2 WILD-TYPE 39 98 14  7
D158V4, multiclass
    clus
vv   ADAMTS2 MUTATED ADAMTS2 WILD-TYPE
  T1               2                39
  T2              11                98
  T3               0                14
  T4               1                 7
                   vv
clus                N0 N1 N2+N3
  ADAMTS2 MUTATED    7  2     4
  ADAMTS2 WILD-TYPE 88 35    31
D158V5, multiclass
       clus
vv      ADAMTS2 MUTATED ADAMTS2 WILD-TYPE
  N0                  7                88
  N1                  2                35
  N2+N3               4                31
                   vv
clus                 M0  M1  MX
  ADAMTS2 MUTATED    11   0   3
  ADAMTS2 WILD-TYPE 132   9  15
D158V6, multiclass
    clus
vv   ADAMTS2 MUTATED ADAMTS2 WILD-TYPE
  M0              11               132
  M1               0                 9
  MX               3                15
D158V7, binary
                   cls
clus                 0  1
  ADAMTS2 MUTATED    6  8
  ADAMTS2 WILD-TYPE 87 71
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ADAMTS2 MUTATED      6    8
  ADAMTS2 WILD-TYPE   87   71
        clus
vv       ADAMTS2 MUTATED ADAMTS2 WILD-TYPE
  FEMALE               6                87
  MALE                 8                71
D158V8, continuous
[1] "Remove cluster labels:" "ADAMTS2 MUTATED"       
clus
  ADAMTS2 MUTATED ADAMTS2 WILD-TYPE 
                1                11 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-64-1677 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-64-5778        TCGA-71-6725        TCGA-73-4662        TCGA-73-4666 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4676        TCGA-75-5122 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  ADAMTS2 MUTATED                            0
  ADAMTS2 WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  ADAMTS2 MUTATED                                   6
  ADAMTS2 WILD-TYPE                                33
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ADAMTS2 MUTATED                                                    8
  ADAMTS2 WILD-TYPE                                                107
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  ADAMTS2 MUTATED                                            0
  ADAMTS2 WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  ADAMTS2 MUTATED                                               0
  ADAMTS2 WILD-TYPE                                             2
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  ADAMTS2 MUTATED                                0
  ADAMTS2 WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  ADAMTS2 MUTATED                                    0
  ADAMTS2 WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  ADAMTS2 MUTATED                              0                             0
  ADAMTS2 WILD-TYPE                            2                             4
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  ADAMTS2 MUTATED                                               0
  ADAMTS2 WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  ADAMTS2 MUTATED                              0
  ADAMTS2 WILD-TYPE                            2
D158V9, multiclass
D158V10, binary
                   cls
clus                  0   1
  ADAMTS2 MUTATED     1  13
  ADAMTS2 WILD-TYPE  13 145
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ADAMTS2 MUTATED      1   13
  ADAMTS2 WILD-TYPE   13  145
     clus
vv    ADAMTS2 MUTATED ADAMTS2 WILD-TYPE
  NO                1                13
  YES              13               145
D158V11, continuous
D158V12, continuous
                   vv
clus                 R0  R1  R2  RX
  ADAMTS2 MUTATED    12   0   0   0
  ADAMTS2 WILD-TYPE 103   6   4   9
D158V13, multiclass
    clus
vv   ADAMTS2 MUTATED ADAMTS2 WILD-TYPE
  R0              12               103
  R1               0                 6
  R2               0                 4
  RX               0                 9

Clustering(159) Variable = FBN2 MUTATION ANALYSIS
D159V1, survival
                sevent
clus2             0  1
  FBN2 MUTATED   19  8
  FBN2 WILD-TYPE 80 48
  FBN2 MUTATED FBN2 WILD-TYPE 
            27            128 
  FBN2 MUTATED FBN2 WILD-TYPE 
             8             48 
$`FBN2 MUTATED`
TCGA-05-4250 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4405 
        3.98        37.02         9.96        24.03        47.05        20.05 
TCGA-38-4631 TCGA-44-2656 TCGA-44-2659 TCGA-44-2668 TCGA-44-3398 TCGA-44-3918 
       11.64        46.98        44.94         8.09        38.24        23.51 
TCGA-44-4112 TCGA-44-6774 TCGA-44-6778 TCGA-50-5935 TCGA-50-5941 TCGA-55-1594 
       23.74         5.42        36.49        21.47        18.64        38.73 
TCGA-64-1676 TCGA-64-1678 TCGA-64-5778 TCGA-64-5781 TCGA-67-3771 TCGA-67-6217 
       56.81        39.09        42.90        51.25        20.02        13.87 
TCGA-73-4677 TCGA-91-6828 TCGA-91-6831 
        1.25        10.62        10.16 

$`FBN2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4402 TCGA-05-4403 
       50.07        19.92        14.01        45.01         8.02        19.00 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       21.99        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 
       15.02        15.02         4.96        28.96        22.03         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        97.74 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 
      120.79        37.71        49.02        28.37        35.28        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       14.73        21.93        13.15        24.36        42.08        42.77 
TCGA-44-2666 TCGA-44-3396 TCGA-44-3919 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
        3.19        37.15         6.21        13.71        12.59        13.38 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 
       10.78         9.93        27.78        11.90        12.16        63.72 
TCGA-44-6777 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       32.45        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
        5.16        55.89        15.02        12.13        29.26        17.13 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        70.55        14.96        25.81        31.04 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
        8.45        15.12        29.00        25.12        22.55        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       23.05        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1677 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 
        0.79        20.65        37.02        87.98         2.04        28.41 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
       28.44         0.99        18.84        14.04        12.66         5.69 
TCGA-67-6216 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
        4.60         2.01        52.57        23.38        29.95        26.27 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-86-6562 TCGA-91-6829 
       15.35         4.27         1.32         5.39        12.36        41.33 
TCGA-91-6835 TCGA-91-6836 
        2.60        13.71 

  FBN2 MUTATED FBN2 WILD-TYPE 
          1.25           0.07 
  FBN2 MUTATED FBN2 WILD-TYPE 
         56.81         120.79 
  FBN2 MUTATED FBN2 WILD-TYPE 
         23.51          20.20 
[1] "1.2 - 56.8 (23.5)"  "0.1 - 120.8 (20.2)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"FBN2 WILD-TYPE"   "FBN2 MUTATED" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"FBN2 WILD-TYPE"   "FBN2 MUTATED"   "FBN2 MUTATED"   "FBN2 MUTATED" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
  "FBN2 MUTATED" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE"   "FBN2 MUTATED" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"FBN2 WILD-TYPE"   "FBN2 MUTATED" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"FBN2 WILD-TYPE"   "FBN2 MUTATED" "FBN2 WILD-TYPE"   "FBN2 MUTATED" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
  "FBN2 MUTATED" "FBN2 WILD-TYPE"   "FBN2 MUTATED"   "FBN2 MUTATED" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"FBN2 WILD-TYPE"   "FBN2 MUTATED" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"FBN2 WILD-TYPE"   "FBN2 MUTATED" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"FBN2 WILD-TYPE"   "FBN2 MUTATED" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE"   "FBN2 MUTATED" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE"   "FBN2 MUTATED" "FBN2 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE"   "FBN2 MUTATED" "FBN2 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"FBN2 WILD-TYPE"   "FBN2 MUTATED" "FBN2 WILD-TYPE"   "FBN2 MUTATED" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE"   "FBN2 MUTATED" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"FBN2 WILD-TYPE"   "FBN2 MUTATED" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
  "FBN2 MUTATED" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE"   "FBN2 MUTATED" "FBN2 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
  "FBN2 MUTATED" "FBN2 WILD-TYPE"   "FBN2 MUTATED" "FBN2 WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
  "FBN2 MUTATED" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"FBN2 WILD-TYPE"   "FBN2 MUTATED" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"FBN2 WILD-TYPE"   "FBN2 MUTATED"   "FBN2 MUTATED"   "FBN2 MUTATED" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
  "FBN2 MUTATED" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE"   "FBN2 MUTATED" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"FBN2 WILD-TYPE"   "FBN2 MUTATED" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"FBN2 WILD-TYPE"   "FBN2 MUTATED" "FBN2 WILD-TYPE"   "FBN2 MUTATED" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
  "FBN2 MUTATED" "FBN2 WILD-TYPE"   "FBN2 MUTATED"   "FBN2 MUTATED" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"FBN2 WILD-TYPE"   "FBN2 MUTATED" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"FBN2 WILD-TYPE"   "FBN2 MUTATED" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"FBN2 WILD-TYPE"   "FBN2 MUTATED" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE"   "FBN2 MUTATED" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE"   "FBN2 MUTATED" "FBN2 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE"   "FBN2 MUTATED" "FBN2 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"FBN2 WILD-TYPE"   "FBN2 MUTATED" "FBN2 WILD-TYPE"   "FBN2 MUTATED" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE"   "FBN2 MUTATED" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"FBN2 WILD-TYPE"   "FBN2 MUTATED" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
  "FBN2 MUTATED" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE"   "FBN2 MUTATED" "FBN2 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
  "FBN2 MUTATED" "FBN2 WILD-TYPE"   "FBN2 MUTATED" "FBN2 WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
  "FBN2 MUTATED" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"FBN2 WILD-TYPE"   "FBN2 MUTATED" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"FBN2 WILD-TYPE"   "FBN2 MUTATED"   "FBN2 MUTATED"   "FBN2 MUTATED" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
  "FBN2 MUTATED" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE"   "FBN2 MUTATED" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"FBN2 WILD-TYPE"   "FBN2 MUTATED" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"FBN2 WILD-TYPE"   "FBN2 MUTATED" "FBN2 WILD-TYPE"   "FBN2 MUTATED" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
  "FBN2 MUTATED" "FBN2 WILD-TYPE"   "FBN2 MUTATED"   "FBN2 MUTATED" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"FBN2 WILD-TYPE"   "FBN2 MUTATED" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"FBN2 WILD-TYPE"   "FBN2 MUTATED" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"FBN2 WILD-TYPE"   "FBN2 MUTATED" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE"   "FBN2 MUTATED" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE"   "FBN2 MUTATED" "FBN2 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE"   "FBN2 MUTATED" "FBN2 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"FBN2 WILD-TYPE"   "FBN2 MUTATED" "FBN2 WILD-TYPE"   "FBN2 MUTATED" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE"   "FBN2 MUTATED" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"FBN2 WILD-TYPE"   "FBN2 MUTATED" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
  "FBN2 MUTATED" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE"   "FBN2 MUTATED" "FBN2 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
  "FBN2 MUTATED" "FBN2 WILD-TYPE"   "FBN2 MUTATED" "FBN2 WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
  "FBN2 MUTATED" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
[1] "hr=" "1.4"
D159V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  FBN2 MUTATED          8       10         2         2          5          2
  FBN2 WILD-TYPE       29       43         9        21         28          4
                vv
clus             STAGE IV
  FBN2 MUTATED          0
  FBN2 WILD-TYPE        9
D159V3, multiclass
                vv
clus             T1 T2 T3 T4
  FBN2 MUTATED    9 16  2  2
  FBN2 WILD-TYPE 32 93 12  6
D159V4, multiclass
    clus
vv   FBN2 MUTATED FBN2 WILD-TYPE
  T1            9             32
  T2           16             93
  T3            2             12
  T4            2              6
                vv
clus             N0 N1 N2+N3
  FBN2 MUTATED   19  5     5
  FBN2 WILD-TYPE 76 32    30
D159V5, multiclass
       clus
vv      FBN2 MUTATED FBN2 WILD-TYPE
  N0              19             76
  N1               5             32
  N2+N3            5             30
                vv
clus              M0  M1  MX
  FBN2 MUTATED    27   0   2
  FBN2 WILD-TYPE 116   9  16
D159V6, multiclass
    clus
vv   FBN2 MUTATED FBN2 WILD-TYPE
  M0           27            116
  M1            0              9
  MX            2             16
D159V7, binary
                cls
clus              0  1
  FBN2 MUTATED   17 12
  FBN2 WILD-TYPE 76 67
[1] "tbl2"
                cls
clus             [,1] [,2]
  FBN2 MUTATED     17   12
  FBN2 WILD-TYPE   76   67
        clus
vv       FBN2 MUTATED FBN2 WILD-TYPE
  FEMALE           17             76
  MALE             12             67
D159V8, continuous
[1] "Remove cluster labels:" "FBN2 MUTATED"          
clus
  FBN2 MUTATED FBN2 WILD-TYPE 
             1             11 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-64-1677 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-71-6725     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4676     TCGA-75-5122 
"FBN2 WILD-TYPE" "FBN2 WILD-TYPE" "FBN2 WILD-TYPE" 
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  FBN2 MUTATED                            0                                 7
  FBN2 WILD-TYPE                          2                                32
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  FBN2 MUTATED                                                   20
  FBN2 WILD-TYPE                                                 95
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  FBN2 MUTATED                                            0
  FBN2 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  FBN2 MUTATED                                               1
  FBN2 WILD-TYPE                                             1
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  FBN2 MUTATED                                0
  FBN2 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  FBN2 MUTATED                                    0
  FBN2 WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  FBN2 MUTATED                              0                             1
  FBN2 WILD-TYPE                            2                             3
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  FBN2 MUTATED                                               0
  FBN2 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  FBN2 MUTATED                              0
  FBN2 WILD-TYPE                            2
D159V9, multiclass
D159V10, binary
                cls
clus               0   1
  FBN2 MUTATED     1  28
  FBN2 WILD-TYPE  13 130
[1] "tbl2"
                cls
clus             [,1] [,2]
  FBN2 MUTATED      1   28
  FBN2 WILD-TYPE   13  130
     clus
vv    FBN2 MUTATED FBN2 WILD-TYPE
  NO             1             13
  YES           28            130
D159V11, continuous
D159V12, continuous
                vv
clus             R0 R1 R2 RX
  FBN2 MUTATED   20  0  2  1
  FBN2 WILD-TYPE 95  6  2  8
D159V13, multiclass
    clus
vv   FBN2 MUTATED FBN2 WILD-TYPE
  R0           20             95
  R1            0              6
  R2            2              2
  RX            1              8

Clustering(160) Variable = BTK MUTATION ANALYSIS
D160V1, survival
               sevent
clus2            0  1
  BTK MUTATED    6  0
  BTK WILD-TYPE 93 56
  BTK MUTATED BTK WILD-TYPE 
            6           149 
  BTK MUTATED BTK WILD-TYPE 
            0            56 
$`BTK MUTATED`
TCGA-05-4382 TCGA-05-4390 TCGA-05-4432 TCGA-44-3398 TCGA-67-3770 TCGA-73-4662 
       19.92        37.02        25.02        38.24         0.99        29.95 

$`BTK WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4396 TCGA-05-4397 
       50.07         3.98        14.01        45.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       26.01        25.02        24.00        15.02        15.02         4.96 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
       28.96        22.03         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        97.74       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61        14.73        21.93 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       46.98        13.15        44.94        24.36        42.08        42.77 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        3.19         8.09        37.15        23.51         6.21        23.74 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       13.71        12.59        13.38        10.78         9.93        27.78 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
       11.90         5.42        12.16        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46         5.16 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       55.89        15.02        12.13        29.26        17.13        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        70.55        14.96        25.81        31.04        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12        18.64        29.00        25.12        22.55 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        87.98         2.04        42.90        28.41        51.25 
TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
       28.44        20.02        18.84        14.04        12.66         5.69 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 
        4.60        13.87         2.01        52.57        23.38        26.27 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 
       15.35         4.27         1.32         5.39         1.25        12.36 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       10.62        41.33        10.16         2.60        13.71 

  BTK MUTATED BTK WILD-TYPE 
         0.99          0.07 
  BTK MUTATED BTK WILD-TYPE 
        38.24        120.79 
  BTK MUTATED BTK WILD-TYPE 
       27.485        20.480 
[1] "1.0 - 38.2 (27.5)"  "0.1 - 120.8 (20.5)"
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"BTK WILD-TYPE" "BTK WILD-TYPE"   "BTK MUTATED" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
  "BTK MUTATED" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"BTK WILD-TYPE" "BTK WILD-TYPE"   "BTK MUTATED" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428    TCGA-05-5429 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE"   "BTK MUTATED" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"BTK WILD-TYPE"   "BTK MUTATED" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"BTK WILD-TYPE" "BTK WILD-TYPE"   "BTK MUTATED" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-86-6562 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-91-6828    TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"BTK WILD-TYPE" "BTK WILD-TYPE"   "BTK MUTATED" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
  "BTK MUTATED" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"BTK WILD-TYPE" "BTK WILD-TYPE"   "BTK MUTATED" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428    TCGA-05-5429 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE"   "BTK MUTATED" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"BTK WILD-TYPE"   "BTK MUTATED" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"BTK WILD-TYPE" "BTK WILD-TYPE"   "BTK MUTATED" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-86-6562 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-91-6828    TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-05-4249    TCGA-05-4250    TCGA-05-4382    TCGA-05-4384    TCGA-05-4389 
"BTK WILD-TYPE" "BTK WILD-TYPE"   "BTK MUTATED" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-05-4390    TCGA-05-4396    TCGA-05-4397    TCGA-05-4398    TCGA-05-4402 
  "BTK MUTATED" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-05-4403    TCGA-05-4405    TCGA-05-4415    TCGA-05-4417    TCGA-05-4418 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-05-4420    TCGA-05-4422    TCGA-05-4424    TCGA-05-4425    TCGA-05-4426 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4432    TCGA-05-4433    TCGA-05-4434 
"BTK WILD-TYPE" "BTK WILD-TYPE"   "BTK MUTATED" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428    TCGA-05-5429 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123    TCGA-35-5375 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4628    TCGA-38-4629 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-38-4630    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178    TCGA-44-2655 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661    TCGA-44-2662 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3396    TCGA-44-3398 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE"   "BTK MUTATED" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-44-5643    TCGA-44-5645 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-44-6144    TCGA-44-6145    TCGA-44-6146    TCGA-44-6147    TCGA-44-6148 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-44-6774    TCGA-44-6775    TCGA-44-6776    TCGA-44-6777    TCGA-44-6778 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-44-6779    TCGA-49-4486    TCGA-49-4487    TCGA-49-4488    TCGA-49-4490 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506    TCGA-49-4507 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-50-5044    TCGA-50-5045    TCGA-50-5049 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068    TCGA-50-5072 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933    TCGA-50-5935 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6642 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-55-6712    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-64-5774    TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-64-5815    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"BTK WILD-TYPE"   "BTK MUTATED" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-67-3774    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4659    TCGA-73-4662    TCGA-73-4666    TCGA-73-4668 
"BTK WILD-TYPE" "BTK WILD-TYPE"   "BTK MUTATED" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-73-4677    TCGA-86-6562 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-91-6828    TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
[1] "hr="     "2.6e+07"
D160V2, continuous
               vv
clus            STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  BTK MUTATED          3        3         0         1          0          0
  BTK WILD-TYPE       34       50        11        22         33          6
               vv
clus            STAGE IV
  BTK MUTATED          0
  BTK WILD-TYPE        9
D160V3, multiclass
               vv
clus             T1  T2  T3  T4
  BTK MUTATED     3   4   0   0
  BTK WILD-TYPE  38 105  14   8
D160V4, multiclass
    clus
vv   BTK MUTATED BTK WILD-TYPE
  T1           3            38
  T2           4           105
  T3           0            14
  T4           0             8
               vv
clus            N0 N1 N2+N3
  BTK MUTATED    6  1     0
  BTK WILD-TYPE 89 36    35
D160V5, multiclass
       clus
vv      BTK MUTATED BTK WILD-TYPE
  N0              6            89
  N1              1            36
  N2+N3           0            35
               vv
clus             M0  M1  MX
  BTK MUTATED     7   0   0
  BTK WILD-TYPE 136   9  18
D160V6, multiclass
    clus
vv   BTK MUTATED BTK WILD-TYPE
  M0           7           136
  M1           0             9
  MX           0            18
D160V7, binary
               cls
clus             0  1
  BTK MUTATED    5  2
  BTK WILD-TYPE 88 77
[1] "tbl2"
               cls
clus            [,1] [,2]
  BTK MUTATED      5    2
  BTK WILD-TYPE   88   77
        clus
vv       BTK MUTATED BTK WILD-TYPE
  FEMALE           5            88
  MALE             2            77
D160V8, continuous
[1] "Remove cluster labels:" "BTK MUTATED"           
clus
  BTK MUTATED BTK WILD-TYPE 
            1            11 
   TCGA-35-4122    TCGA-35-4123    TCGA-35-5375    TCGA-64-1677    TCGA-64-5778 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-71-6725    TCGA-73-4659    TCGA-73-4666    TCGA-73-4668    TCGA-73-4676 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-75-5122 
"BTK WILD-TYPE" 
               vv
clus            LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  BTK MUTATED                            0                                 3
  BTK WILD-TYPE                          2                                36
               vv
clus            LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  BTK MUTATED                                                    4
  BTK WILD-TYPE                                                111
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  BTK MUTATED                                            0
  BTK WILD-TYPE                                          1
               vv
clus            LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  BTK MUTATED                                               0
  BTK WILD-TYPE                                             2
               vv
clus            LUNG CLEAR CELL ADENOCARCINOMA
  BTK MUTATED                                0
  BTK WILD-TYPE                              2
               vv
clus            LUNG MICROPAPILLARY ADENOCARCINOMA LUNG MUCINOUS ADENOCARCINOMA
  BTK MUTATED                                    0                            0
  BTK WILD-TYPE                                  2                            2
               vv
clus            LUNG PAPILLARY ADENOCARCINOMA
  BTK MUTATED                               0
  BTK WILD-TYPE                             4
               vv
clus            LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  BTK MUTATED                                               0
  BTK WILD-TYPE                                             1
               vv
clus            MUCINOUS (COLLOID) CARCINOMA
  BTK MUTATED                              0
  BTK WILD-TYPE                            2
D160V9, multiclass
D160V10, binary
               cls
clus              0   1
  BTK MUTATED     0   7
  BTK WILD-TYPE  14 151
[1] "tbl2"
               cls
clus            [,1] [,2]
  BTK MUTATED      0    7
  BTK WILD-TYPE   14  151
     clus
vv    BTK MUTATED BTK WILD-TYPE
  NO            0            14
  YES           7           151
D160V11, continuous
D160V12, continuous
               vv
clus             R0  R1  R2  RX
  BTK MUTATED     7   0   0   0
  BTK WILD-TYPE 108   6   4   9
D160V13, multiclass
    clus
vv   BTK MUTATED BTK WILD-TYPE
  R0           7           108
  R1           0             6
  R2           0             4
  RX           0             9

Clustering(161) Variable = REG1B MUTATION ANALYSIS
D161V1, survival
                 sevent
clus2              0  1
  REG1B MUTATED   10  3
  REG1B WILD-TYPE 89 53
  REG1B MUTATED REG1B WILD-TYPE 
             13             142 
  REG1B MUTATED REG1B WILD-TYPE 
              3              53 
$`REG1B MUTATED`
TCGA-05-4417 TCGA-05-4427 TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 TCGA-44-2657 
       14.93        26.01         0.46         7.36         8.68        13.15 
TCGA-44-3918 TCGA-49-4510 TCGA-50-5045 TCGA-50-5049 TCGA-55-1592 TCGA-73-4668 
       23.51        29.46        71.47        70.55        23.05        15.35 
TCGA-73-4676 
        5.39 

$`REG1B WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
        2.96         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-4123 
        4.96        28.96        22.03         0.99         2.04         5.95 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       97.74       120.79        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2659 
       11.64        44.61        14.73        21.93        46.98        44.94 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
       24.36        42.08        42.77         3.19         8.09        37.15 
TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
       38.24         6.21        23.74        13.71        12.59        13.38 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
       10.78         9.93        27.78        11.90         5.42        12.16 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
        8.81         5.16        55.89        15.02        12.13        29.26 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       17.13        20.48        14.96        25.81        31.04        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12        18.64        29.00        25.12        22.55 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       33.37        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       87.98         2.04        42.90        28.41        51.25        28.44 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99        20.02        18.84        14.04        12.66         5.69 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        4.60        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 
       26.27         4.27         1.32         1.25        12.36        10.62 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33        10.16         2.60        13.71 

  REG1B MUTATED REG1B WILD-TYPE 
           0.46            0.07 
  REG1B MUTATED REG1B WILD-TYPE 
          71.47          120.79 
  REG1B MUTATED REG1B WILD-TYPE 
          15.35           21.06 
[1] "0.5 - 71.5 (15.3)"  "0.1 - 120.8 (21.1)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
  "REG1B MUTATED" "REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
  "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
  "REG1B MUTATED"   "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
  "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
  "REG1B MUTATED" "REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
  "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
  "REG1B MUTATED"   "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
  "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
  "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
  "REG1B MUTATED" "REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
  "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
  "REG1B MUTATED"   "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
  "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
[1] "hr=" "1.5"
D161V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  REG1B MUTATED          5        3         1         3          1          0
  REG1B WILD-TYPE       32       50        10        20         32          6
                 vv
clus              STAGE IV
  REG1B MUTATED          0
  REG1B WILD-TYPE        9
D161V3, multiclass
                 vv
clus              T1 T2 T3 T4
  REG1B MUTATED    2 11  0  0
  REG1B WILD-TYPE 39 98 14  8
D161V4, multiclass
    clus
vv   REG1B MUTATED REG1B WILD-TYPE
  T1             2              39
  T2            11              98
  T3             0              14
  T4             0               8
                 vv
clus              N0 N1 N2+N3
  REG1B MUTATED    6  5     1
  REG1B WILD-TYPE 89 32    34
D161V5, multiclass
       clus
vv      REG1B MUTATED REG1B WILD-TYPE
  N0                6              89
  N1                5              32
  N2+N3             1              34
                 vv
clus               M0  M1  MX
  REG1B MUTATED    13   0   0
  REG1B WILD-TYPE 130   9  18
D161V6, multiclass
    clus
vv   REG1B MUTATED REG1B WILD-TYPE
  M0            13             130
  M1             0               9
  MX             0              18
D161V7, binary
                 cls
clus               0  1
  REG1B MUTATED    7  6
  REG1B WILD-TYPE 86 73
[1] "tbl2"
                 cls
clus              [,1] [,2]
  REG1B MUTATED      7    6
  REG1B WILD-TYPE   86   73
        clus
vv       REG1B MUTATED REG1B WILD-TYPE
  FEMALE             7              86
  MALE               6              73
D161V8, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  REG1B MUTATED                            0                                 2
  REG1B WILD-TYPE                          2                                37
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  REG1B MUTATED                                                   10
  REG1B WILD-TYPE                                                105
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  REG1B MUTATED                                            0
  REG1B WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  REG1B MUTATED                                               0
  REG1B WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  REG1B MUTATED                                0
  REG1B WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  REG1B MUTATED                                    1
  REG1B WILD-TYPE                                  1
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  REG1B MUTATED                              0                             0
  REG1B WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  REG1B MUTATED                                               0
  REG1B WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  REG1B MUTATED                              0
  REG1B WILD-TYPE                            2
D161V9, multiclass
D161V10, binary
                 cls
clus                0   1
  REG1B MUTATED     3  10
  REG1B WILD-TYPE  11 148
[1] "tbl2"
                 cls
clus              [,1] [,2]
  REG1B MUTATED      3   10
  REG1B WILD-TYPE   11  148
     clus
vv    REG1B MUTATED REG1B WILD-TYPE
  NO              3              11
  YES            10             148
D161V11, continuous
D161V12, continuous
                 vv
clus               R0  R1  R2  RX
  REG1B MUTATED    11   0   0   0
  REG1B WILD-TYPE 104   6   4   9
D161V13, multiclass
    clus
vv   REG1B MUTATED REG1B WILD-TYPE
  R0            11             104
  R1             0               6
  R2             0               4
  RX             0               9

Clustering(162) Variable = COL5A2 MUTATION ANALYSIS
D162V1, survival
                  sevent
clus2               0  1
  COL5A2 MUTATED   10  7
  COL5A2 WILD-TYPE 89 49
  COL5A2 MUTATED COL5A2 WILD-TYPE 
              17              138 
  COL5A2 MUTATED COL5A2 WILD-TYPE 
               7               49 
$`COL5A2 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4397 TCGA-05-4405 TCGA-05-4420 TCGA-05-5423 
       19.92         9.96        24.03        20.05        29.95         4.96 
TCGA-38-4631 TCGA-44-2656 TCGA-44-6145 TCGA-50-5049 TCGA-50-5933 TCGA-50-6590 
       11.64        46.98        10.78        70.55        77.88        42.31 
TCGA-50-6593 TCGA-50-6594 TCGA-64-5774 TCGA-64-5779 TCGA-73-4666 
       11.05        12.16        87.98        28.41        26.27 

$`COL5A2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4398 
       50.07         3.98        14.01        45.01        37.02        47.05 
TCGA-05-4402 TCGA-05-4403 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4422 
        8.02        19.00         2.96        14.93         8.98        12.00 
TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       30.02        21.99        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 
       24.00        15.02        15.02        28.96        22.03         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        97.74 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 
      120.79        37.71        49.02        28.37        35.28        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       14.73        21.93        13.15        44.94        24.36        42.08 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       42.77         3.19         8.09        37.15        38.24        23.51 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6146 
        6.21        23.74        13.71        12.59        13.38         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
       27.78        11.90         5.42        12.16        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
        5.16        55.89        15.02        12.13        29.26        17.13 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       20.48        71.47        14.96        25.81        31.04        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 
        8.05         9.27         8.78        35.87        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 
       15.12        18.64        29.00        25.12        22.55         3.88 
TCGA-50-6592 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       25.51         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 
       20.65        39.09        37.02         2.04        42.90        51.25 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       28.44         0.99        20.02        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        5.69         4.60        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       29.95        15.35         4.27         1.32         5.39         1.25 
TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       12.36        10.62        41.33        10.16         2.60        13.71 

  COL5A2 MUTATED COL5A2 WILD-TYPE 
            4.96             0.07 
  COL5A2 MUTATED COL5A2 WILD-TYPE 
           87.98           120.79 
  COL5A2 MUTATED COL5A2 WILD-TYPE 
          24.030           20.565 
[1] "5.0 - 88.0 (24.0)"  "0.1 - 120.8 (20.6)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE"   "COL5A2 MUTATED" "COL5A2 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE"   "COL5A2 MUTATED"   "COL5A2 MUTATED" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE"   "COL5A2 MUTATED" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE"   "COL5A2 MUTATED" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE"   "COL5A2 MUTATED" "COL5A2 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"COL5A2 WILD-TYPE"   "COL5A2 MUTATED" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"COL5A2 WILD-TYPE"   "COL5A2 MUTATED" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"COL5A2 WILD-TYPE"   "COL5A2 MUTATED" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"COL5A2 WILD-TYPE"   "COL5A2 MUTATED" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE"   "COL5A2 MUTATED" "COL5A2 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE"   "COL5A2 MUTATED" "COL5A2 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"COL5A2 WILD-TYPE"   "COL5A2 MUTATED"   "COL5A2 MUTATED" "COL5A2 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"COL5A2 WILD-TYPE"   "COL5A2 MUTATED" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
  "COL5A2 MUTATED" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE"   "COL5A2 MUTATED" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE"   "COL5A2 MUTATED" "COL5A2 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE"   "COL5A2 MUTATED"   "COL5A2 MUTATED" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE"   "COL5A2 MUTATED" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE"   "COL5A2 MUTATED" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE"   "COL5A2 MUTATED" "COL5A2 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"COL5A2 WILD-TYPE"   "COL5A2 MUTATED" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"COL5A2 WILD-TYPE"   "COL5A2 MUTATED" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"COL5A2 WILD-TYPE"   "COL5A2 MUTATED" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"COL5A2 WILD-TYPE"   "COL5A2 MUTATED" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE"   "COL5A2 MUTATED" "COL5A2 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE"   "COL5A2 MUTATED" "COL5A2 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"COL5A2 WILD-TYPE"   "COL5A2 MUTATED"   "COL5A2 MUTATED" "COL5A2 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"COL5A2 WILD-TYPE"   "COL5A2 MUTATED" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
  "COL5A2 MUTATED" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE"   "COL5A2 MUTATED" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE"   "COL5A2 MUTATED" "COL5A2 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE"   "COL5A2 MUTATED"   "COL5A2 MUTATED" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE"   "COL5A2 MUTATED" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE"   "COL5A2 MUTATED" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE"   "COL5A2 MUTATED" "COL5A2 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"COL5A2 WILD-TYPE"   "COL5A2 MUTATED" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"COL5A2 WILD-TYPE"   "COL5A2 MUTATED" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"COL5A2 WILD-TYPE"   "COL5A2 MUTATED" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"COL5A2 WILD-TYPE"   "COL5A2 MUTATED" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE"   "COL5A2 MUTATED" "COL5A2 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE"   "COL5A2 MUTATED" "COL5A2 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"COL5A2 WILD-TYPE"   "COL5A2 MUTATED"   "COL5A2 MUTATED" "COL5A2 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"COL5A2 WILD-TYPE"   "COL5A2 MUTATED" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
  "COL5A2 MUTATED" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE"   "COL5A2 MUTATED" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
[1] "hr=" "1.2"
D162V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  COL5A2 MUTATED          2        7         0         2          3          3
  COL5A2 WILD-TYPE       35       46        11        21         30          3
                  vv
clus               STAGE IV
  COL5A2 MUTATED          1
  COL5A2 WILD-TYPE        8
D162V3, multiclass
                  vv
clus               T1 T2 T3 T4
  COL5A2 MUTATED    3 11  1  3
  COL5A2 WILD-TYPE 38 98 13  5
D162V4, multiclass
    clus
vv   COL5A2 MUTATED COL5A2 WILD-TYPE
  T1              3               38
  T2             11               98
  T3              1               13
  T4              3                5
                  vv
clus               N0 N1 N2+N3
  COL5A2 MUTATED   10  3     5
  COL5A2 WILD-TYPE 85 34    30
D162V5, multiclass
       clus
vv      COL5A2 MUTATED COL5A2 WILD-TYPE
  N0                10               85
  N1                 3               34
  N2+N3              5               30
                  vv
clus                M0  M1  MX
  COL5A2 MUTATED    17   1   0
  COL5A2 WILD-TYPE 126   8  18
D162V6, multiclass
    clus
vv   COL5A2 MUTATED COL5A2 WILD-TYPE
  M0             17              126
  M1              1                8
  MX              0               18
D162V7, binary
                  cls
clus                0  1
  COL5A2 MUTATED    7 11
  COL5A2 WILD-TYPE 86 68
[1] "tbl2"
                  cls
clus               [,1] [,2]
  COL5A2 MUTATED      7   11
  COL5A2 WILD-TYPE   86   68
        clus
vv       COL5A2 MUTATED COL5A2 WILD-TYPE
  FEMALE              7               86
  MALE               11               68
D162V8, continuous
[1] "Remove cluster labels:" "COL5A2 MUTATED"        
clus
  COL5A2 MUTATED COL5A2 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-64-5778       TCGA-71-6725       TCGA-73-4659       TCGA-73-4662 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  COL5A2 MUTATED                            1                                 8
  COL5A2 WILD-TYPE                          1                                31
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  COL5A2 MUTATED                                                    9
  COL5A2 WILD-TYPE                                                106
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  COL5A2 MUTATED                                            0
  COL5A2 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  COL5A2 MUTATED                                               0
  COL5A2 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  COL5A2 MUTATED                                0
  COL5A2 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  COL5A2 MUTATED                                    0
  COL5A2 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  COL5A2 MUTATED                              0                             0
  COL5A2 WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  COL5A2 MUTATED                                               0
  COL5A2 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  COL5A2 MUTATED                              0
  COL5A2 WILD-TYPE                            2
D162V9, multiclass
D162V10, binary
                  cls
clus                 0   1
  COL5A2 MUTATED     4  14
  COL5A2 WILD-TYPE  10 144
[1] "tbl2"
                  cls
clus               [,1] [,2]
  COL5A2 MUTATED      4   14
  COL5A2 WILD-TYPE   10  144
     clus
vv    COL5A2 MUTATED COL5A2 WILD-TYPE
  NO               4               10
  YES             14              144
D162V11, continuous
D162V12, continuous
                  vv
clus                R0  R1  R2  RX
  COL5A2 MUTATED    12   0   0   0
  COL5A2 WILD-TYPE 103   6   4   9
D162V13, multiclass
    clus
vv   COL5A2 MUTATED COL5A2 WILD-TYPE
  R0             12              103
  R1              0                6
  R2              0                4
  RX              0                9

Clustering(163) Variable = NHEDC1 MUTATION ANALYSIS
D163V1, survival
                  sevent
clus2               0  1
  NHEDC1 MUTATED    6  2
  NHEDC1 WILD-TYPE 93 54
  NHEDC1 MUTATED NHEDC1 WILD-TYPE 
               8              147 
  NHEDC1 MUTATED NHEDC1 WILD-TYPE 
               2               54 
$`NHEDC1 MUTATED`
TCGA-05-4390 TCGA-05-4396 TCGA-05-4420 TCGA-38-4626 TCGA-38-4632 TCGA-44-3918 
       37.02         9.96        29.95       120.79        44.61        23.51 
TCGA-49-6742 TCGA-64-5781 
       15.02        51.25 

$`NHEDC1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4397 
       50.07         3.98        19.92        14.01        45.01        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
        8.98        12.00        30.02        21.99        26.01        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02        15.02         4.96 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
       28.96        22.03         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        5.95         8.68        97.74        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       35.28        11.64        14.73        21.93        46.98        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       44.94        24.36        42.08        42.77         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
       37.15        38.24         6.21        23.74        13.71        12.59 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
       13.38        10.78         9.93        27.78        11.90         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
       12.16        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 
       32.84         8.81        29.46         5.16        55.89        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       29.26        17.13        20.48        71.47        70.55        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81        31.04        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12        18.64 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
       29.00        25.12        22.55        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        87.98         2.04 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       42.90        28.41        28.44         0.99        20.02        18.84 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
       14.04        12.66         5.69         4.60        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        26.27        15.35         4.27 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 
        1.32         5.39         1.25        12.36        10.62        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       10.16         2.60        13.71 

  NHEDC1 MUTATED NHEDC1 WILD-TYPE 
            9.96             0.07 
  NHEDC1 MUTATED NHEDC1 WILD-TYPE 
          120.79            97.74 
  NHEDC1 MUTATED NHEDC1 WILD-TYPE 
          33.485           20.050 
[1] "10.0 - 120.8 (33.5)" "0.1 - 97.7 (20.1)"  
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
  "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
  "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
  "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"NHEDC1 WILD-TYPE"   "NHEDC1 MUTATED" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
[1] "hr=" "2.6"
D163V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  NHEDC1 MUTATED          1        4         1         1          0          1
  NHEDC1 WILD-TYPE       36       49        10        22         33          5
                  vv
clus               STAGE IV
  NHEDC1 MUTATED          1
  NHEDC1 WILD-TYPE        8
D163V3, multiclass
                  vv
clus                T1  T2  T3  T4
  NHEDC1 MUTATED     1   7   0   1
  NHEDC1 WILD-TYPE  40 102  14   7
D163V4, multiclass
    clus
vv   NHEDC1 MUTATED NHEDC1 WILD-TYPE
  T1              1               40
  T2              7              102
  T3              0               14
  T4              1                7
                  vv
clus               N0 N1 N2+N3
  NHEDC1 MUTATED    6  3     0
  NHEDC1 WILD-TYPE 89 34    35
D163V5, multiclass
       clus
vv      NHEDC1 MUTATED NHEDC1 WILD-TYPE
  N0                 6               89
  N1                 3               34
  N2+N3              0               35
                  vv
clus                M0  M1  MX
  NHEDC1 MUTATED     8   1   0
  NHEDC1 WILD-TYPE 135   8  18
D163V6, multiclass
    clus
vv   NHEDC1 MUTATED NHEDC1 WILD-TYPE
  M0              8              135
  M1              1                8
  MX              0               18
D163V7, binary
                  cls
clus                0  1
  NHEDC1 MUTATED    4  5
  NHEDC1 WILD-TYPE 89 74
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NHEDC1 MUTATED      4    5
  NHEDC1 WILD-TYPE   89   74
        clus
vv       NHEDC1 MUTATED NHEDC1 WILD-TYPE
  FEMALE              4               89
  MALE                5               74
D163V8, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  NHEDC1 MUTATED                            0                                 4
  NHEDC1 WILD-TYPE                          2                                35
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  NHEDC1 MUTATED                                                    3
  NHEDC1 WILD-TYPE                                                112
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  NHEDC1 MUTATED                                            0
  NHEDC1 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  NHEDC1 MUTATED                                               0
  NHEDC1 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  NHEDC1 MUTATED                                0
  NHEDC1 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  NHEDC1 MUTATED                                    0
  NHEDC1 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  NHEDC1 MUTATED                              0                             0
  NHEDC1 WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  NHEDC1 MUTATED                                               1
  NHEDC1 WILD-TYPE                                             0
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  NHEDC1 MUTATED                              1
  NHEDC1 WILD-TYPE                            1
D163V9, multiclass
D163V10, binary
                  cls
clus                 0   1
  NHEDC1 MUTATED     0   9
  NHEDC1 WILD-TYPE  14 149
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NHEDC1 MUTATED      0    9
  NHEDC1 WILD-TYPE   14  149
     clus
vv    NHEDC1 MUTATED NHEDC1 WILD-TYPE
  NO               0               14
  YES              9              149
D163V11, continuous
D163V12, continuous
                  vv
clus                R0  R1  R2  RX
  NHEDC1 MUTATED     9   0   0   0
  NHEDC1 WILD-TYPE 106   6   4   9
D163V13, multiclass
    clus
vv   NHEDC1 MUTATED NHEDC1 WILD-TYPE
  R0              9              106
  R1              0                6
  R2              0                4
  RX              0                9

Clustering(164) Variable = IL1RAPL1 MUTATION ANALYSIS
D164V1, survival
                    sevent
clus2                 0  1
  IL1RAPL1 MUTATED    6  5
  IL1RAPL1 WILD-TYPE 93 51
  IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE 
                11                144 
  IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE 
                 5                 51 
$`IL1RAPL1 MUTATED`
TCGA-05-5428 TCGA-38-4626 TCGA-38-4632 TCGA-44-2662 TCGA-44-2665 TCGA-44-6774 
       22.03       120.79        44.61        42.08        42.77         5.42 
TCGA-49-4488 TCGA-49-4505 TCGA-50-5931 TCGA-64-1677 TCGA-67-3774 
       28.57        14.07         8.78        20.65        12.66 

$`IL1RAPL1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       21.99        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02        15.02         4.96        28.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 
        0.46         7.36         5.95         8.68        97.74        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-44-2655 
       49.02        28.37        35.28        11.64        14.73        21.93 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2666 TCGA-44-2668 
       46.98        13.15        44.94        24.36         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       37.15        38.24        23.51         6.21        23.74        13.71 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
       12.59        13.38        10.78         9.93        27.78        11.90 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
       12.16        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 
       28.11        12.66        35.54        46.72        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46         5.16        55.89        15.02        12.13        29.26 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
       17.13        20.48        71.47        70.55        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 
       31.04        49.28         8.05         9.27        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12        18.64        29.00        25.12 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       22.55        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1678 
        2.86         0.07        32.61         0.79        56.81        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        87.98         2.04        42.90        28.41        51.25 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-6215 
       28.44         0.99        20.02        18.84        14.04         5.69 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        4.60        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       26.27        15.35         4.27         1.32         5.39         1.25 
TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       12.36        10.62        41.33        10.16         2.60        13.71 

  IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE 
              5.42               0.07 
  IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE 
            120.79              97.74 
  IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE 
            22.030             20.265 
[1] "5.4 - 120.8 (22.0)" "0.1 - 97.7 (20.3)" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
  "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-44-2655 
  "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED"   "IL1RAPL1 MUTATED" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5645 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-49-4486 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5044         TCGA-50-5045         TCGA-50-5049 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5051         TCGA-50-5055         TCGA-50-5066 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5068         TCGA-50-5072         TCGA-50-5930 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5931         TCGA-50-5932         TCGA-50-5933 
  "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5935         TCGA-50-5936         TCGA-50-5939 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5941         TCGA-50-5942         TCGA-50-5944 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5946         TCGA-50-6590         TCGA-50-6591 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-6592         TCGA-50-6593         TCGA-50-6594 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-6595         TCGA-50-6597         TCGA-55-1592 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-55-6712         TCGA-64-1676         TCGA-64-1677 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" 
        TCGA-64-1678         TCGA-64-1680         TCGA-64-5774 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
  "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-67-6217         TCGA-71-6725         TCGA-73-4658 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-73-4659         TCGA-73-4662         TCGA-73-4666 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-73-4668         TCGA-73-4670         TCGA-73-4675 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-73-4676         TCGA-73-4677         TCGA-86-6562 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
  "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-44-2655 
  "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED"   "IL1RAPL1 MUTATED" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5645 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-49-4486 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5044         TCGA-50-5045         TCGA-50-5049 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5051         TCGA-50-5055         TCGA-50-5066 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5068         TCGA-50-5072         TCGA-50-5930 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5931         TCGA-50-5932         TCGA-50-5933 
  "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5935         TCGA-50-5936         TCGA-50-5939 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5941         TCGA-50-5942         TCGA-50-5944 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5946         TCGA-50-6590         TCGA-50-6591 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-6592         TCGA-50-6593         TCGA-50-6594 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-6595         TCGA-50-6597         TCGA-55-1592 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-55-6712         TCGA-64-1676         TCGA-64-1677 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" 
        TCGA-64-1678         TCGA-64-1680         TCGA-64-5774 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
  "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-67-6217         TCGA-71-6725         TCGA-73-4658 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-73-4659         TCGA-73-4662         TCGA-73-4666 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-73-4668         TCGA-73-4670         TCGA-73-4675 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-73-4676         TCGA-73-4677         TCGA-86-6562 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
  "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-44-2655 
  "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED"   "IL1RAPL1 MUTATED" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5645 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-49-4486 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5044         TCGA-50-5045         TCGA-50-5049 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5051         TCGA-50-5055         TCGA-50-5066 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5068         TCGA-50-5072         TCGA-50-5930 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5931         TCGA-50-5932         TCGA-50-5933 
  "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5935         TCGA-50-5936         TCGA-50-5939 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5941         TCGA-50-5942         TCGA-50-5944 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-5946         TCGA-50-6590         TCGA-50-6591 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-6592         TCGA-50-6593         TCGA-50-6594 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-50-6595         TCGA-50-6597         TCGA-55-1592 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-55-6712         TCGA-64-1676         TCGA-64-1677 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE"   "IL1RAPL1 MUTATED" 
        TCGA-64-1678         TCGA-64-1680         TCGA-64-5774 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
  "IL1RAPL1 MUTATED" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-67-6217         TCGA-71-6725         TCGA-73-4658 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-73-4659         TCGA-73-4662         TCGA-73-4666 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-73-4668         TCGA-73-4670         TCGA-73-4675 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-73-4676         TCGA-73-4677         TCGA-86-6562 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
[1] "hr=" "1"  
D164V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  IL1RAPL1 MUTATED          1        3         2         2          2
  IL1RAPL1 WILD-TYPE       36       50         9        21         31
                    vv
clus                 STAGE IIIB STAGE IV
  IL1RAPL1 MUTATED            0        1
  IL1RAPL1 WILD-TYPE          6        8
D164V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  IL1RAPL1 MUTATED     3   8   0   0
  IL1RAPL1 WILD-TYPE  38 101  14   8
D164V4, multiclass
    clus
vv   IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  T1                3                 38
  T2                8                101
  T3                0                 14
  T4                0                  8
                    vv
clus                 N0 N1 N2+N3
  IL1RAPL1 MUTATED    5  4     2
  IL1RAPL1 WILD-TYPE 90 33    33
D164V5, multiclass
       clus
vv      IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  N0                   5                 90
  N1                   4                 33
  N2+N3                2                 33
                    vv
clus                  M0  M1  MX
  IL1RAPL1 MUTATED     9   1   1
  IL1RAPL1 WILD-TYPE 134   8  17
D164V6, multiclass
    clus
vv   IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  M0                9                134
  M1                1                  8
  MX                1                 17
D164V7, binary
                    cls
clus                  0  1
  IL1RAPL1 MUTATED    8  3
  IL1RAPL1 WILD-TYPE 85 76
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  IL1RAPL1 MUTATED      8    3
  IL1RAPL1 WILD-TYPE   85   76
        clus
vv       IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  FEMALE                8                 85
  MALE                  3                 76
D164V8, continuous
[1] "Remove cluster labels:" "IL1RAPL1 MUTATED"      
clus
  IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE 
                 1                 11 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-64-5778         TCGA-71-6725         TCGA-73-4659 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
        TCGA-73-4676         TCGA-75-5122 
"IL1RAPL1 WILD-TYPE" "IL1RAPL1 WILD-TYPE" 
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  IL1RAPL1 MUTATED                            0
  IL1RAPL1 WILD-TYPE                          2
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  IL1RAPL1 MUTATED                                   1
  IL1RAPL1 WILD-TYPE                                38
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  IL1RAPL1 MUTATED                                                   10
  IL1RAPL1 WILD-TYPE                                                105
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  IL1RAPL1 MUTATED                                            0
  IL1RAPL1 WILD-TYPE                                          1
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  IL1RAPL1 MUTATED                                               0
  IL1RAPL1 WILD-TYPE                                             2
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  IL1RAPL1 MUTATED                                0
  IL1RAPL1 WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  IL1RAPL1 MUTATED                                    0
  IL1RAPL1 WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  IL1RAPL1 MUTATED                              0                             0
  IL1RAPL1 WILD-TYPE                            2                             4
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  IL1RAPL1 MUTATED                                               0
  IL1RAPL1 WILD-TYPE                                             1
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  IL1RAPL1 MUTATED                              0
  IL1RAPL1 WILD-TYPE                            2
D164V9, multiclass
D164V10, binary
                    cls
clus                   0   1
  IL1RAPL1 MUTATED     0  11
  IL1RAPL1 WILD-TYPE  14 147
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  IL1RAPL1 MUTATED      0   11
  IL1RAPL1 WILD-TYPE   14  147
     clus
vv    IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  NO                 0                 14
  YES               11                147
D164V11, continuous
D164V12, continuous
                    vv
clus                  R0  R1  R2  RX
  IL1RAPL1 MUTATED     9   0   0   1
  IL1RAPL1 WILD-TYPE 106   6   4   8
D164V13, multiclass
    clus
vv   IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  R0                9                106
  R1                0                  6
  R2                0                  4
  RX                1                  8

Clustering(165) Variable = DGKB MUTATION ANALYSIS
D165V1, survival
                sevent
clus2             0  1
  DGKB MUTATED    5  6
  DGKB WILD-TYPE 94 50
  DGKB MUTATED DGKB WILD-TYPE 
            11            144 
  DGKB MUTATED DGKB WILD-TYPE 
             6             50 
$`DGKB MUTATED`
TCGA-05-4397 TCGA-05-4405 TCGA-44-2656 TCGA-44-6144 TCGA-44-6777 TCGA-50-5049 
       24.03        20.05        46.98        13.38        32.45        70.55 
TCGA-50-5931 TCGA-50-5941 TCGA-50-6590 TCGA-55-1592 TCGA-91-6829 
        8.78        18.64        42.31        23.05        41.33 

$`DGKB WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4415 TCGA-05-4417 
        9.96        47.05         8.02        19.00         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        4.96        28.96        22.03         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61        14.73 
TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       21.93        13.15        44.94        24.36        42.08        42.77 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        37.15        38.24        23.51         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       23.74        13.71        12.59        10.78         9.93        27.78 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 
       11.90         5.42        12.16        63.72        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46         5.16        55.89 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        29.26        17.13        20.48        71.47 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81        31.04        49.28         8.05         9.27 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 
       35.87        77.88        21.47         8.45        15.12        29.00 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       25.12        22.55         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
        6.21        33.37        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        87.98         2.04        42.90        28.41        51.25 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       28.44         0.99        20.02        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        5.69         4.60        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        26.27        15.35         4.27         1.32         5.39 
TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25        12.36        10.62        10.16         2.60        13.71 

  DGKB MUTATED DGKB WILD-TYPE 
          8.78           0.07 
  DGKB MUTATED DGKB WILD-TYPE 
         70.55         120.79 
  DGKB MUTATED DGKB WILD-TYPE 
         24.03          20.25 
[1] "8.8 - 70.5 (24.0)"  "0.1 - 120.8 (20.2)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE"   "DGKB MUTATED" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE"   "DGKB MUTATED" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"DGKB WILD-TYPE"   "DGKB MUTATED" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
  "DGKB MUTATED" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
  "DGKB MUTATED" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"DGKB WILD-TYPE"   "DGKB MUTATED" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
  "DGKB MUTATED" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"DGKB WILD-TYPE" "DGKB WILD-TYPE"   "DGKB MUTATED" "DGKB WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"DGKB WILD-TYPE" "DGKB WILD-TYPE"   "DGKB MUTATED" "DGKB WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"DGKB WILD-TYPE"   "DGKB MUTATED" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE"   "DGKB MUTATED" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE"   "DGKB MUTATED" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE"   "DGKB MUTATED" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"DGKB WILD-TYPE"   "DGKB MUTATED" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
  "DGKB MUTATED" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
  "DGKB MUTATED" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"DGKB WILD-TYPE"   "DGKB MUTATED" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
  "DGKB MUTATED" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"DGKB WILD-TYPE" "DGKB WILD-TYPE"   "DGKB MUTATED" "DGKB WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"DGKB WILD-TYPE" "DGKB WILD-TYPE"   "DGKB MUTATED" "DGKB WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"DGKB WILD-TYPE"   "DGKB MUTATED" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE"   "DGKB MUTATED" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE"   "DGKB MUTATED" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE"   "DGKB MUTATED" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"DGKB WILD-TYPE"   "DGKB MUTATED" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
  "DGKB MUTATED" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
  "DGKB MUTATED" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"DGKB WILD-TYPE"   "DGKB MUTATED" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
  "DGKB MUTATED" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"DGKB WILD-TYPE" "DGKB WILD-TYPE"   "DGKB MUTATED" "DGKB WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"DGKB WILD-TYPE" "DGKB WILD-TYPE"   "DGKB MUTATED" "DGKB WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"DGKB WILD-TYPE"   "DGKB MUTATED" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE"   "DGKB MUTATED" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
[1] "hr=" "1.3"
D165V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  DGKB MUTATED          3        6         0         1          1          0
  DGKB WILD-TYPE       34       47        11        22         32          6
                vv
clus             STAGE IV
  DGKB MUTATED          0
  DGKB WILD-TYPE        9
D165V3, multiclass
                vv
clus             T1 T2 T3 T4
  DGKB MUTATED    1 10  0  0
  DGKB WILD-TYPE 40 99 14  8
D165V4, multiclass
    clus
vv   DGKB MUTATED DGKB WILD-TYPE
  T1            1             40
  T2           10             99
  T3            0             14
  T4            0              8
                vv
clus             N0 N1 N2+N3
  DGKB MUTATED    8  1     1
  DGKB WILD-TYPE 87 36    34
D165V5, multiclass
       clus
vv      DGKB MUTATED DGKB WILD-TYPE
  N0               8             87
  N1               1             36
  N2+N3            1             34
                vv
clus              M0  M1  MX
  DGKB MUTATED     9   0   2
  DGKB WILD-TYPE 134   9  16
D165V6, multiclass
    clus
vv   DGKB MUTATED DGKB WILD-TYPE
  M0            9            134
  M1            0              9
  MX            2             16
D165V7, binary
                cls
clus              0  1
  DGKB MUTATED    5  6
  DGKB WILD-TYPE 88 73
[1] "tbl2"
                cls
clus             [,1] [,2]
  DGKB MUTATED      5    6
  DGKB WILD-TYPE   88   73
        clus
vv       DGKB MUTATED DGKB WILD-TYPE
  FEMALE            5             88
  MALE              6             73
D165V8, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  DGKB MUTATED                            0                                 2
  DGKB WILD-TYPE                          2                                37
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  DGKB MUTATED                                                    8
  DGKB WILD-TYPE                                                107
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  DGKB MUTATED                                            0
  DGKB WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  DGKB MUTATED                                               1
  DGKB WILD-TYPE                                             1
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  DGKB MUTATED                                0
  DGKB WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  DGKB MUTATED                                    0
  DGKB WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  DGKB MUTATED                              0                             0
  DGKB WILD-TYPE                            2                             4
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  DGKB MUTATED                                               0
  DGKB WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  DGKB MUTATED                              0
  DGKB WILD-TYPE                            2
D165V9, multiclass
D165V10, binary
                cls
clus               0   1
  DGKB MUTATED     2   9
  DGKB WILD-TYPE  12 149
[1] "tbl2"
                cls
clus             [,1] [,2]
  DGKB MUTATED      2    9
  DGKB WILD-TYPE   12  149
     clus
vv    DGKB MUTATED DGKB WILD-TYPE
  NO             2             12
  YES            9            149
D165V11, continuous
D165V12, continuous
                vv
clus              R0  R1  R2  RX
  DGKB MUTATED     5   0   0   1
  DGKB WILD-TYPE 110   6   4   8
D165V13, multiclass
    clus
vv   DGKB MUTATED DGKB WILD-TYPE
  R0            5            110
  R1            0              6
  R2            0              4
  RX            1              8

Clustering(166) Variable = COL25A1 MUTATION ANALYSIS
D166V1, survival
                   sevent
clus2                0  1
  COL25A1 MUTATED    5  3
  COL25A1 WILD-TYPE 94 53
  COL25A1 MUTATED COL25A1 WILD-TYPE 
                8               147 
  COL25A1 MUTATED COL25A1 WILD-TYPE 
                3                53 
$`COL25A1 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-5715 TCGA-38-4631 TCGA-44-2656 TCGA-44-2665 
       19.92         9.96         2.04        11.64        46.98        42.77 
TCGA-44-3398 TCGA-49-4510 
       38.24        29.46 

$`COL25A1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4397 
       50.07         3.98        14.01        45.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-35-3615 TCGA-35-4122 
        4.96        28.96        22.03         0.99         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        97.74       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2657 
       28.37        35.28        44.61        14.73        21.93        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
       44.94        24.36        42.08         3.19         8.09        37.15 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
       23.51         6.21        23.74        13.71        12.59        13.38 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
       10.78         9.93        27.78        11.90         5.42        12.16 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
        8.81         5.16        55.89        15.02        12.13        29.26 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
       17.13        20.48        71.47        70.55        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       31.04        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12        18.64        29.00 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       25.12        22.55        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        87.98         2.04        42.90 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       28.41        51.25        28.44         0.99        20.02        18.84 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
       14.04        12.66         5.69         4.60        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        26.27        15.35         4.27 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 
        1.32         5.39         1.25        12.36        10.62        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       10.16         2.60        13.71 

  COL25A1 MUTATED COL25A1 WILD-TYPE 
             2.04              0.07 
  COL25A1 MUTATED COL25A1 WILD-TYPE 
            46.98            120.79 
  COL25A1 MUTATED COL25A1 WILD-TYPE 
            24.69             20.65 
[1] "2.0 - 47.0 (24.7)"  "0.1 - 120.8 (20.6)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
  "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
  "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE"   "COL25A1 MUTATED" "COL25A1 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
  "COL25A1 MUTATED" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" "COL25A1 WILD-TYPE" 
[1] "hr=" "1"  
D166V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  COL25A1 MUTATED          1        6         0         2          1          1
  COL25A1 WILD-TYPE       36       47        11        21         32          5
                   vv
clus                STAGE IV
  COL25A1 MUTATED          0
  COL25A1 WILD-TYPE        9
D166V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  COL25A1 MUTATED     1   8   1   1
  COL25A1 WILD-TYPE  40 101  13   7
D166V4, multiclass
    clus
vv   COL25A1 MUTATED COL25A1 WILD-TYPE
  T1               1                40
  T2               8               101
  T3               1                13
  T4               1                 7
                   vv
clus                N0 N1 N2+N3
  COL25A1 MUTATED    7  3     1
  COL25A1 WILD-TYPE 88 34    34
D166V5, multiclass
       clus
vv      COL25A1 MUTATED COL25A1 WILD-TYPE
  N0                  7                88
  N1                  3                34
  N2+N3               1                34
                   vv
clus                 M0  M1  MX
  COL25A1 MUTATED    11   0   0
  COL25A1 WILD-TYPE 132   9  18
D166V6, multiclass
    clus
vv   COL25A1 MUTATED COL25A1 WILD-TYPE
  M0              11               132
  M1               0                 9
  MX               0                18
D166V7, binary
                   cls
clus                 0  1
  COL25A1 MUTATED    6  5
  COL25A1 WILD-TYPE 87 74
[1] "tbl2"
                   cls
clus                [,1] [,2]
  COL25A1 MUTATED      6    5
  COL25A1 WILD-TYPE   87   74
        clus
vv       COL25A1 MUTATED COL25A1 WILD-TYPE
  FEMALE               6                87
  MALE                 5                74
D166V8, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  COL25A1 MUTATED                            0
  COL25A1 WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  COL25A1 MUTATED                                   4
  COL25A1 WILD-TYPE                                35
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  COL25A1 MUTATED                                                    5
  COL25A1 WILD-TYPE                                                110
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  COL25A1 MUTATED                                            0
  COL25A1 WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  COL25A1 MUTATED                                               0
  COL25A1 WILD-TYPE                                             2
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  COL25A1 MUTATED                                0
  COL25A1 WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  COL25A1 MUTATED                                    0
  COL25A1 WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  COL25A1 MUTATED                              0                             1
  COL25A1 WILD-TYPE                            2                             3
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  COL25A1 MUTATED                                               1
  COL25A1 WILD-TYPE                                             0
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  COL25A1 MUTATED                              0
  COL25A1 WILD-TYPE                            2
D166V9, multiclass
D166V10, binary
                   cls
clus                  0   1
  COL25A1 MUTATED     0  11
  COL25A1 WILD-TYPE  14 147
[1] "tbl2"
                   cls
clus                [,1] [,2]
  COL25A1 MUTATED      0   11
  COL25A1 WILD-TYPE   14  147
     clus
vv    COL25A1 MUTATED COL25A1 WILD-TYPE
  NO                0                14
  YES              11               147
D166V11, continuous
D166V12, continuous
                   vv
clus                 R0  R1  R2  RX
  COL25A1 MUTATED     8   0   1   1
  COL25A1 WILD-TYPE 107   6   3   8
D166V13, multiclass
    clus
vv   COL25A1 MUTATED COL25A1 WILD-TYPE
  R0               8               107
  R1               0                 6
  R2               1                 3
  RX               1                 8

Clustering(167) Variable = SEMA5A MUTATION ANALYSIS
D167V1, survival
                  sevent
clus2               0  1
  SEMA5A MUTATED    8  5
  SEMA5A WILD-TYPE 91 51
  SEMA5A MUTATED SEMA5A WILD-TYPE 
              13              142 
  SEMA5A MUTATED SEMA5A WILD-TYPE 
               5               51 
$`SEMA5A MUTATED`
TCGA-05-4396 TCGA-05-4424 TCGA-38-4625 TCGA-44-3398 TCGA-44-6778 TCGA-49-4506 
        9.96        30.02        97.74        38.24        36.49        32.84 
TCGA-49-6744 TCGA-50-5930 TCGA-50-6590 TCGA-50-6592 TCGA-64-1676 TCGA-64-1678 
       29.26         9.27        42.31        25.51        56.81        39.09 
TCGA-64-5815 
       28.44 

$`SEMA5A WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 
       14.93         8.98        29.95        12.00        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        4.96        28.96        22.03         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        7.36         5.95         8.68       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61        14.73        21.93 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       46.98        13.15        44.94        24.36        42.08        42.77 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        3.19         8.09        37.15        23.51         6.21        23.74 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       13.71        12.59        13.38        10.78         9.93        27.78 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 
       11.90         5.42        12.16        63.72        32.45        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       14.07         8.81        29.46         5.16        55.89        15.02 
TCGA-49-6743 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.13        17.13        20.48        71.47        70.55        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5931 TCGA-50-5932 
       25.81        31.04        49.28         8.05         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12        18.64        29.00 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       25.12        22.55         3.88        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 TCGA-64-1680 TCGA-64-5774 
        0.07        32.61         0.79        20.65        37.02        87.98 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-67-3770 TCGA-67-3771 
        2.04        42.90        28.41        51.25         0.99        20.02 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
       18.84        14.04        12.66         5.69         4.60        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        26.27        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 
        4.27         1.32         5.39         1.25        12.36        10.62 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33        10.16         2.60        13.71 

  SEMA5A MUTATED SEMA5A WILD-TYPE 
            9.27             0.07 
  SEMA5A MUTATED SEMA5A WILD-TYPE 
           97.74           120.79 
  SEMA5A MUTATED SEMA5A WILD-TYPE 
           32.84            19.46 
[1] "9.3 - 97.7 (32.8)"  "0.1 - 120.8 (19.5)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE"   "SEMA5A MUTATED" "SEMA5A WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"SEMA5A WILD-TYPE"   "SEMA5A MUTATED" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE"   "SEMA5A MUTATED" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE"   "SEMA5A MUTATED" "SEMA5A WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"SEMA5A WILD-TYPE"   "SEMA5A MUTATED" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE"   "SEMA5A MUTATED" "SEMA5A WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"SEMA5A WILD-TYPE"   "SEMA5A MUTATED" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE"   "SEMA5A MUTATED" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE"   "SEMA5A MUTATED" "SEMA5A WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
  "SEMA5A MUTATED" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"SEMA5A WILD-TYPE"   "SEMA5A MUTATED" "SEMA5A WILD-TYPE"   "SEMA5A MUTATED" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE"   "SEMA5A MUTATED" "SEMA5A WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE"   "SEMA5A MUTATED" "SEMA5A WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"SEMA5A WILD-TYPE"   "SEMA5A MUTATED" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE"   "SEMA5A MUTATED" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE"   "SEMA5A MUTATED" "SEMA5A WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"SEMA5A WILD-TYPE"   "SEMA5A MUTATED" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE"   "SEMA5A MUTATED" "SEMA5A WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"SEMA5A WILD-TYPE"   "SEMA5A MUTATED" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE"   "SEMA5A MUTATED" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE"   "SEMA5A MUTATED" "SEMA5A WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
  "SEMA5A MUTATED" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"SEMA5A WILD-TYPE"   "SEMA5A MUTATED" "SEMA5A WILD-TYPE"   "SEMA5A MUTATED" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE"   "SEMA5A MUTATED" "SEMA5A WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE"   "SEMA5A MUTATED" "SEMA5A WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"SEMA5A WILD-TYPE"   "SEMA5A MUTATED" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE"   "SEMA5A MUTATED" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE"   "SEMA5A MUTATED" "SEMA5A WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"SEMA5A WILD-TYPE"   "SEMA5A MUTATED" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE"   "SEMA5A MUTATED" "SEMA5A WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"SEMA5A WILD-TYPE"   "SEMA5A MUTATED" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE"   "SEMA5A MUTATED" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE"   "SEMA5A MUTATED" "SEMA5A WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
  "SEMA5A MUTATED" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"SEMA5A WILD-TYPE"   "SEMA5A MUTATED" "SEMA5A WILD-TYPE"   "SEMA5A MUTATED" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE"   "SEMA5A MUTATED" "SEMA5A WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" "SEMA5A WILD-TYPE" 
[1] "hr=" "1.5"
D167V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  SEMA5A MUTATED          3        5         2         3          1          1
  SEMA5A WILD-TYPE       34       48         9        20         32          5
                  vv
clus               STAGE IV
  SEMA5A MUTATED          0
  SEMA5A WILD-TYPE        9
D167V3, multiclass
                  vv
clus               T1 T2 T3 T4
  SEMA5A MUTATED    3 10  1  1
  SEMA5A WILD-TYPE 38 99 13  7
D167V4, multiclass
    clus
vv   SEMA5A MUTATED SEMA5A WILD-TYPE
  T1              3               38
  T2             10               99
  T3              1               13
  T4              1                7
                  vv
clus               N0 N1 N2+N3
  SEMA5A MUTATED   10  4     1
  SEMA5A WILD-TYPE 85 33    34
D167V5, multiclass
       clus
vv      SEMA5A MUTATED SEMA5A WILD-TYPE
  N0                10               85
  N1                 4               33
  N2+N3              1               34
                  vv
clus                M0  M1  MX
  SEMA5A MUTATED    13   0   2
  SEMA5A WILD-TYPE 130   9  16
D167V6, multiclass
    clus
vv   SEMA5A MUTATED SEMA5A WILD-TYPE
  M0             13              130
  M1              0                9
  MX              2               16
D167V7, binary
                  cls
clus                0  1
  SEMA5A MUTATED    7  8
  SEMA5A WILD-TYPE 86 71
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SEMA5A MUTATED      7    8
  SEMA5A WILD-TYPE   86   71
        clus
vv       SEMA5A MUTATED SEMA5A WILD-TYPE
  FEMALE              7               86
  MALE                8               71
D167V8, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  SEMA5A MUTATED                            0                                 6
  SEMA5A WILD-TYPE                          2                                33
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SEMA5A MUTATED                                                    8
  SEMA5A WILD-TYPE                                                107
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  SEMA5A MUTATED                                            0
  SEMA5A WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  SEMA5A MUTATED                                               0
  SEMA5A WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  SEMA5A MUTATED                                0
  SEMA5A WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  SEMA5A MUTATED                                    0
  SEMA5A WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  SEMA5A MUTATED                              0                             0
  SEMA5A WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  SEMA5A MUTATED                                               1
  SEMA5A WILD-TYPE                                             0
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  SEMA5A MUTATED                              0
  SEMA5A WILD-TYPE                            2
D167V9, multiclass
D167V10, binary
                  cls
clus                 0   1
  SEMA5A MUTATED     1  14
  SEMA5A WILD-TYPE  13 144
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SEMA5A MUTATED      1   14
  SEMA5A WILD-TYPE   13  144
     clus
vv    SEMA5A MUTATED SEMA5A WILD-TYPE
  NO               1               13
  YES             14              144
D167V11, continuous
D167V12, continuous
                  vv
clus                R0  R1  R2  RX
  SEMA5A MUTATED     8   2   0   1
  SEMA5A WILD-TYPE 107   4   4   8
D167V13, multiclass
    clus
vv   SEMA5A MUTATED SEMA5A WILD-TYPE
  R0              8              107
  R1              2                4
  R2              0                4
  RX              1                8

Clustering(168) Variable = BHMT MUTATION ANALYSIS
D168V1, survival
                sevent
clus2             0  1
  BHMT MUTATED    2  2
  BHMT WILD-TYPE 97 54
  BHMT MUTATED BHMT WILD-TYPE 
             4            151 
  BHMT MUTATED BHMT WILD-TYPE 
             2             54 
$`BHMT MUTATED`
TCGA-05-5428 TCGA-50-5044 TCGA-55-1592 TCGA-67-3771 
       22.03        20.48        23.05        20.02 

$`BHMT WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       21.99        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02        15.02         4.96        28.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        97.74       120.79 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       14.73        21.93        46.98        13.15        44.94        24.36 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       42.08        42.77         3.19         8.09        37.15        38.24 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
       23.51         6.21        23.74        13.71        12.59        13.38 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
       10.78         9.93        27.78        11.90         5.42        12.16 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46         5.16        55.89        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
       29.26        17.13        71.47        70.55        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       31.04        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12        18.64        29.00 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       25.12        22.55        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       12.16         6.21        33.37        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        87.98         2.04        42.90        28.41 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       51.25        28.44         0.99        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        5.69         4.60        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        26.27        15.35         4.27         1.32         5.39 
TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.25        12.36        10.62        41.33        10.16         2.60 
TCGA-91-6836 
       13.71 

  BHMT MUTATED BHMT WILD-TYPE 
         20.02           0.07 
  BHMT MUTATED BHMT WILD-TYPE 
         23.05         120.79 
  BHMT MUTATED BHMT WILD-TYPE 
        21.255         20.650 
[1] "20.0 - 23.1 (21.3)" "0.1 - 120.8 (20.6)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
  "BHMT MUTATED" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE"   "BHMT MUTATED" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"BHMT WILD-TYPE"   "BHMT MUTATED" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
  "BHMT MUTATED" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
  "BHMT MUTATED" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE"   "BHMT MUTATED" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"BHMT WILD-TYPE"   "BHMT MUTATED" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
  "BHMT MUTATED" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
  "BHMT MUTATED" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE"   "BHMT MUTATED" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"BHMT WILD-TYPE"   "BHMT MUTATED" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
  "BHMT MUTATED" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
[1] "hr=" "2"  
D168V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  BHMT MUTATED          2        0         1         0          0          1
  BHMT WILD-TYPE       35       53        10        23         33          5
                vv
clus             STAGE IV
  BHMT MUTATED          1
  BHMT WILD-TYPE        8
D168V3, multiclass
                vv
clus              T1  T2  T3  T4
  BHMT MUTATED     2   2   0   1
  BHMT WILD-TYPE  39 107  14   7
D168V4, multiclass
    clus
vv   BHMT MUTATED BHMT WILD-TYPE
  T1            2             39
  T2            2            107
  T3            0             14
  T4            1              7
                vv
clus             N0 N1 N2+N3
  BHMT MUTATED    2  2     1
  BHMT WILD-TYPE 93 35    34
D168V5, multiclass
       clus
vv      BHMT MUTATED BHMT WILD-TYPE
  N0               2             93
  N1               2             35
  N2+N3            1             34
                vv
clus              M0  M1  MX
  BHMT MUTATED     4   1   0
  BHMT WILD-TYPE 139   8  18
D168V6, multiclass
    clus
vv   BHMT MUTATED BHMT WILD-TYPE
  M0            4            139
  M1            1              8
  MX            0             18
D168V7, binary
                cls
clus              0  1
  BHMT MUTATED    2  3
  BHMT WILD-TYPE 91 76
[1] "tbl2"
                cls
clus             [,1] [,2]
  BHMT MUTATED      2    3
  BHMT WILD-TYPE   91   76
        clus
vv       BHMT MUTATED BHMT WILD-TYPE
  FEMALE            2             91
  MALE              3             76
D168V8, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  BHMT MUTATED                            0                                 1
  BHMT WILD-TYPE                          2                                38
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  BHMT MUTATED                                                    4
  BHMT WILD-TYPE                                                111
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  BHMT MUTATED                                            0
  BHMT WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  BHMT MUTATED                                               0
  BHMT WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  BHMT MUTATED                                0
  BHMT WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  BHMT MUTATED                                    0
  BHMT WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  BHMT MUTATED                              0                             0
  BHMT WILD-TYPE                            2                             4
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  BHMT MUTATED                                               0
  BHMT WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  BHMT MUTATED                              0
  BHMT WILD-TYPE                            2
D168V9, multiclass
D168V10, binary
                cls
clus               0   1
  BHMT MUTATED     0   5
  BHMT WILD-TYPE  14 153
[1] "tbl2"
                cls
clus             [,1] [,2]
  BHMT MUTATED      0    5
  BHMT WILD-TYPE   14  153
     clus
vv    BHMT MUTATED BHMT WILD-TYPE
  NO             0             14
  YES            5            153
D168V11, continuous
[1] "Remove cluster labels:" "BHMT MUTATED"          
clus
  BHMT MUTATED BHMT WILD-TYPE 
             2            110 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4405     TCGA-05-4410     TCGA-05-4415 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-05-4417     TCGA-05-4418     TCGA-05-4420     TCGA-05-4422 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-05-4424     TCGA-05-4425     TCGA-05-4426     TCGA-05-4427 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-05-4430     TCGA-05-4432     TCGA-05-4433     TCGA-05-4434 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-05-5420     TCGA-05-5423     TCGA-05-5425     TCGA-35-4122 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-38-4629     TCGA-38-4631     TCGA-38-4632     TCGA-44-2655 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2662 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-44-2666     TCGA-44-2668     TCGA-44-3396     TCGA-44-3398 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-44-3918     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6148 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-49-4490     TCGA-49-4494     TCGA-49-4505     TCGA-49-4506 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-49-4507     TCGA-49-4510     TCGA-49-4514     TCGA-49-6742 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-49-6767 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-50-5051     TCGA-50-5072     TCGA-50-5931     TCGA-50-5939 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-50-5941     TCGA-50-5942     TCGA-50-6590     TCGA-55-1596 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-55-6543     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-73-4658 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-73-4659     TCGA-73-4662     TCGA-73-4666     TCGA-73-4668 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-73-4670     TCGA-73-4675     TCGA-73-4676     TCGA-75-5122 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-75-5125     TCGA-75-5126     TCGA-75-6203     TCGA-75-6206 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-75-6207     TCGA-75-6211     TCGA-80-5611     TCGA-91-6829 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-91-6835     TCGA-91-6836 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" 
D168V12, continuous
[1] "Remove cluster labels:" "BHMT MUTATED"          
clus
  BHMT MUTATED BHMT WILD-TYPE 
             2             66 
    TCGA-05-4384     TCGA-05-4390     TCGA-05-4396     TCGA-05-4405 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-05-4410     TCGA-05-4415     TCGA-05-4417     TCGA-05-4424 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4433     TCGA-05-5420     TCGA-05-5423 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-05-5425     TCGA-35-4122     TCGA-35-4123     TCGA-35-5375 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-38-4625     TCGA-38-4626     TCGA-44-2655     TCGA-44-2656 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2659     TCGA-44-2662     TCGA-44-2666 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5645     TCGA-44-6144     TCGA-44-6145 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-44-6147     TCGA-44-6148     TCGA-44-6774     TCGA-44-6775 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-44-6776     TCGA-44-6777     TCGA-44-6778     TCGA-44-6779 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-49-4486     TCGA-49-4494     TCGA-49-4505     TCGA-55-1594 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-55-1595     TCGA-55-1596     TCGA-55-5899     TCGA-55-6642 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1677     TCGA-64-1678     TCGA-64-1680 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-64-5781     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-91-6829     TCGA-91-6836 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" 
                vv
clus              R0  R1  R2  RX
  BHMT MUTATED     3   0   0   1
  BHMT WILD-TYPE 112   6   4   8
D168V13, multiclass
    clus
vv   BHMT MUTATED BHMT WILD-TYPE
  R0            3            112
  R1            0              6
  R2            0              4
  RX            1              8

Clustering(169) Variable = CXCL6 MUTATION ANALYSIS
D169V1, survival
                 sevent
clus2              0  1
  CXCL6 MUTATED    2  2
  CXCL6 WILD-TYPE 97 54
  CXCL6 MUTATED CXCL6 WILD-TYPE 
              4             151 
  CXCL6 MUTATED CXCL6 WILD-TYPE 
              2              54 
$`CXCL6 MUTATED`
TCGA-05-4396 TCGA-50-5931 TCGA-64-1676 TCGA-91-6836 
        9.96         8.78        56.81        13.71 

$`CXCL6 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 
       15.02         4.96        28.96        22.03         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        97.74       120.79 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       14.73        21.93        46.98        13.15        44.94        24.36 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       42.08        42.77         3.19         8.09        37.15        38.24 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
       23.51         6.21        23.74        13.71        12.59        13.38 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
       10.78         9.93        27.78        11.90         5.42        12.16 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46         5.16        55.89        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       29.26        17.13        20.48        71.47        70.55        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 
       25.81        31.04        49.28         8.05         9.27        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12        18.64        29.00 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       25.12        22.55        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 
       45.17         2.86         0.07        32.61         0.79        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        87.98         2.04        42.90        28.41 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       51.25        28.44         0.99        20.02        18.84        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
       12.66         5.69         4.60        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        26.27        15.35         4.27         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        5.39         1.25        12.36        10.62        41.33        10.16 
TCGA-91-6835 
        2.60 

  CXCL6 MUTATED CXCL6 WILD-TYPE 
           8.78            0.07 
  CXCL6 MUTATED CXCL6 WILD-TYPE 
          56.81          120.79 
  CXCL6 MUTATED CXCL6 WILD-TYPE 
         11.835          21.470 
[1] "8.8 - 56.8 (11.8)"  "0.1 - 120.8 (21.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE"   "CXCL6 MUTATED" "CXCL6 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
  "CXCL6 MUTATED" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"CXCL6 WILD-TYPE"   "CXCL6 MUTATED" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE"   "CXCL6 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE"   "CXCL6 MUTATED" "CXCL6 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
  "CXCL6 MUTATED" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"CXCL6 WILD-TYPE"   "CXCL6 MUTATED" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE"   "CXCL6 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE"   "CXCL6 MUTATED" "CXCL6 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
  "CXCL6 MUTATED" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"CXCL6 WILD-TYPE"   "CXCL6 MUTATED" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE"   "CXCL6 MUTATED" 
[1] "hr=" "1.4"
D169V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  CXCL6 MUTATED          1        2         0         0          0          1
  CXCL6 WILD-TYPE       36       51        11        23         33          5
                 vv
clus              STAGE IV
  CXCL6 MUTATED          0
  CXCL6 WILD-TYPE        9
D169V3, multiclass
                 vv
clus               T1  T2  T3  T4
  CXCL6 MUTATED     1   2   0   1
  CXCL6 WILD-TYPE  40 107  14   7
D169V4, multiclass
    clus
vv   CXCL6 MUTATED CXCL6 WILD-TYPE
  T1             1              40
  T2             2             107
  T3             0              14
  T4             1               7
                 vv
clus              N0 N1 N2+N3
  CXCL6 MUTATED    3  1     0
  CXCL6 WILD-TYPE 92 36    35
D169V5, multiclass
       clus
vv      CXCL6 MUTATED CXCL6 WILD-TYPE
  N0                3              92
  N1                1              36
  N2+N3             0              35
                 vv
clus               M0  M1  MX
  CXCL6 MUTATED     3   0   1
  CXCL6 WILD-TYPE 140   9  17
D169V6, multiclass
    clus
vv   CXCL6 MUTATED CXCL6 WILD-TYPE
  M0             3             140
  M1             0               9
  MX             1              17
D169V7, binary
                 cls
clus               0  1
  CXCL6 MUTATED    2  2
  CXCL6 WILD-TYPE 91 77
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CXCL6 MUTATED      2    2
  CXCL6 WILD-TYPE   91   77
        clus
vv       CXCL6 MUTATED CXCL6 WILD-TYPE
  FEMALE             2              91
  MALE               2              77
D169V8, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  CXCL6 MUTATED                            0                                 1
  CXCL6 WILD-TYPE                          2                                38
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CXCL6 MUTATED                                                    3
  CXCL6 WILD-TYPE                                                112
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  CXCL6 MUTATED                                            0
  CXCL6 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  CXCL6 MUTATED                                               0
  CXCL6 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  CXCL6 MUTATED                                0
  CXCL6 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  CXCL6 MUTATED                                    0
  CXCL6 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  CXCL6 MUTATED                              0                             0
  CXCL6 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  CXCL6 MUTATED                                               0
  CXCL6 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  CXCL6 MUTATED                              0
  CXCL6 WILD-TYPE                            2
D169V9, multiclass
D169V10, binary
                 cls
clus                0   1
  CXCL6 MUTATED     0   4
  CXCL6 WILD-TYPE  14 154
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CXCL6 MUTATED      0    4
  CXCL6 WILD-TYPE   14  154
     clus
vv    CXCL6 MUTATED CXCL6 WILD-TYPE
  NO              0              14
  YES             4             154
D169V11, continuous
D169V12, continuous
[1] "Remove cluster labels:" "CXCL6 MUTATED"         
clus
  CXCL6 MUTATED CXCL6 WILD-TYPE 
              2              66 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4405      TCGA-05-4410 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4424      TCGA-05-4427 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-05-4433      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-05-5428      TCGA-35-4122      TCGA-35-4123      TCGA-35-5375 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-38-4625      TCGA-38-4626      TCGA-44-2655      TCGA-44-2656 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2662      TCGA-44-2666 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5645      TCGA-44-6144      TCGA-44-6145 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-6147      TCGA-44-6148      TCGA-44-6774      TCGA-44-6775 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-6776      TCGA-44-6777      TCGA-44-6778      TCGA-44-6779 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-49-4486      TCGA-49-4494      TCGA-49-4505      TCGA-55-1592 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1595      TCGA-55-1596      TCGA-55-5899 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-55-6642      TCGA-55-6712      TCGA-64-1677      TCGA-64-1678 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-73-4659      TCGA-73-4662 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4668      TCGA-73-4670      TCGA-73-4675 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-73-4676      TCGA-91-6829 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
                 vv
clus               R0  R1  R2  RX
  CXCL6 MUTATED     3   0   0   0
  CXCL6 WILD-TYPE 112   6   4   9
D169V13, multiclass
    clus
vv   CXCL6 MUTATED CXCL6 WILD-TYPE
  R0             3             112
  R1             0               6
  R2             0               4
  RX             0               9

Clustering(170) Variable = CLEC12B MUTATION ANALYSIS
D170V1, survival
                   sevent
clus2                0  1
  CLEC12B MUTATED    1  2
  CLEC12B WILD-TYPE 98 54
  CLEC12B MUTATED CLEC12B WILD-TYPE 
                3               152 
  CLEC12B MUTATED CLEC12B WILD-TYPE 
                2                54 
$`CLEC12B MUTATED`
TCGA-44-2657 TCGA-49-4488 TCGA-49-4510 
       13.15        28.57        29.46 

$`CLEC12B WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       21.99        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 
       15.02        15.02         4.96        28.96        22.03         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        97.74 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
      120.79        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2659 TCGA-44-2661 
       44.61        14.73        21.93        46.98        44.94        24.36 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       42.08        42.77         3.19         8.09        37.15        38.24 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
       23.51         6.21        23.74        13.71        12.59        13.38 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
       10.78         9.93        27.78        11.90         5.42        12.16 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
        5.16        55.89        15.02        12.13        29.26        17.13 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        70.55        14.96        25.81        31.04 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12        18.64        29.00        25.12 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       22.55        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        87.98         2.04        42.90        28.41 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       51.25        28.44         0.99        20.02        18.84        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
       12.66         5.69         4.60        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        26.27        15.35         4.27         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        5.39         1.25        12.36        10.62        41.33        10.16 
TCGA-91-6835 TCGA-91-6836 
        2.60        13.71 

  CLEC12B MUTATED CLEC12B WILD-TYPE 
            13.15              0.07 
  CLEC12B MUTATED CLEC12B WILD-TYPE 
            29.46            120.79 
  CLEC12B MUTATED CLEC12B WILD-TYPE 
           28.570            20.565 
[1] "13.2 - 29.5 (28.6)" "0.1 - 120.8 (20.6)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE"   "CLEC12B MUTATED" "CLEC12B WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"CLEC12B WILD-TYPE"   "CLEC12B MUTATED" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
  "CLEC12B MUTATED" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE"   "CLEC12B MUTATED" "CLEC12B WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"CLEC12B WILD-TYPE"   "CLEC12B MUTATED" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
  "CLEC12B MUTATED" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE"   "CLEC12B MUTATED" "CLEC12B WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"CLEC12B WILD-TYPE"   "CLEC12B MUTATED" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
  "CLEC12B MUTATED" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
[1] "hr=" "2"  
D170V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  CLEC12B MUTATED          1        1         0         1          0          0
  CLEC12B WILD-TYPE       36       52        11        22         33          6
                   vv
clus                STAGE IV
  CLEC12B MUTATED          0
  CLEC12B WILD-TYPE        9
D170V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  CLEC12B MUTATED     1   2   0   0
  CLEC12B WILD-TYPE  40 107  14   8
D170V4, multiclass
    clus
vv   CLEC12B MUTATED CLEC12B WILD-TYPE
  T1               1                40
  T2               2               107
  T3               0                14
  T4               0                 8
                   vv
clus                N0 N1 N2+N3
  CLEC12B MUTATED    1  1     0
  CLEC12B WILD-TYPE 94 36    35
D170V5, multiclass
[1] "Remove cluster labels:" "CLEC12B MUTATED"       
clus
  CLEC12B MUTATED CLEC12B WILD-TYPE 
                2               165 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-05-4382 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4384        TCGA-05-4389        TCGA-05-4390        TCGA-05-4395 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4396        TCGA-05-4397        TCGA-05-4398        TCGA-05-4403 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4405        TCGA-05-4410        TCGA-05-4415        TCGA-05-4417 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4422        TCGA-05-4424 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4425        TCGA-05-4426        TCGA-05-4427        TCGA-05-4430 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4432        TCGA-05-4433        TCGA-05-4434        TCGA-05-5420 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-5423        TCGA-05-5425        TCGA-05-5428        TCGA-05-5429 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-5715        TCGA-35-3615        TCGA-35-4122        TCGA-35-4123 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-35-5375        TCGA-38-4625        TCGA-38-4626        TCGA-38-4627 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-38-4628        TCGA-38-4629        TCGA-38-4630        TCGA-38-4631 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-38-4632        TCGA-38-6178        TCGA-44-2655        TCGA-44-2656 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6148 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6778 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-6779        TCGA-49-4486        TCGA-49-4487        TCGA-49-4490 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-49-6767 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5044        TCGA-50-5045        TCGA-50-5049        TCGA-50-5051 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5055        TCGA-50-5066        TCGA-50-5068        TCGA-50-5072 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5930        TCGA-50-5931        TCGA-50-5932        TCGA-50-5933 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5935        TCGA-50-5936        TCGA-50-5939        TCGA-50-5941 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5942        TCGA-50-5944        TCGA-50-5946        TCGA-50-6590 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-6591        TCGA-50-6592        TCGA-50-6593        TCGA-50-6594 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-6595        TCGA-50-6597        TCGA-55-1592        TCGA-55-1594 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-64-1676        TCGA-64-1677 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1680        TCGA-64-5774        TCGA-64-5775 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3772        TCGA-67-3773 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-67-3774        TCGA-67-4679        TCGA-67-6215        TCGA-67-6216 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-67-6217        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-75-5122 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-75-5125        TCGA-75-5126        TCGA-75-5146        TCGA-75-5147 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-75-6203        TCGA-75-6205        TCGA-75-6206        TCGA-75-6207 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-75-6211        TCGA-75-6212        TCGA-80-5611        TCGA-86-6562 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-91-6836 
"CLEC12B WILD-TYPE" 
                   vv
clus                 M0  M1  MX
  CLEC12B MUTATED     2   0   1
  CLEC12B WILD-TYPE 141   9  17
D170V6, multiclass
    clus
vv   CLEC12B MUTATED CLEC12B WILD-TYPE
  M0               2               141
  M1               0                 9
  MX               1                17
D170V7, binary
                   cls
clus                 0  1
  CLEC12B MUTATED    3  0
  CLEC12B WILD-TYPE 90 79
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CLEC12B MUTATED      3    0
  CLEC12B WILD-TYPE   90   79
        clus
vv       CLEC12B MUTATED CLEC12B WILD-TYPE
  FEMALE               3                90
  MALE                 0                79
D170V8, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  CLEC12B MUTATED                            0
  CLEC12B WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  CLEC12B MUTATED                                   0
  CLEC12B WILD-TYPE                                39
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CLEC12B MUTATED                                                    3
  CLEC12B WILD-TYPE                                                112
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  CLEC12B MUTATED                                            0
  CLEC12B WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  CLEC12B MUTATED                                               0
  CLEC12B WILD-TYPE                                             2
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  CLEC12B MUTATED                                0
  CLEC12B WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  CLEC12B MUTATED                                    0
  CLEC12B WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  CLEC12B MUTATED                              0                             0
  CLEC12B WILD-TYPE                            2                             4
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  CLEC12B MUTATED                                               0
  CLEC12B WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  CLEC12B MUTATED                              0
  CLEC12B WILD-TYPE                            2
D170V9, multiclass
D170V10, binary
                   cls
clus                  0   1
  CLEC12B MUTATED     0   3
  CLEC12B WILD-TYPE  14 155
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CLEC12B MUTATED      0    3
  CLEC12B WILD-TYPE   14  155
     clus
vv    CLEC12B MUTATED CLEC12B WILD-TYPE
  NO                0                14
  YES               3               155
D170V11, continuous
[1] "Remove cluster labels:" "CLEC12B MUTATED"       
clus
  CLEC12B MUTATED CLEC12B WILD-TYPE 
                2               110 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-05-4382 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4384        TCGA-05-4389        TCGA-05-4390        TCGA-05-4396 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4397        TCGA-05-4398        TCGA-05-4405        TCGA-05-4410 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-5428        TCGA-35-4122        TCGA-35-4123        TCGA-35-5375 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-38-4625        TCGA-38-4626        TCGA-38-4629        TCGA-38-4631 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-38-4632        TCGA-44-2655        TCGA-44-2656        TCGA-44-2659 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-2662        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-4112        TCGA-44-5643 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4490        TCGA-49-4494        TCGA-49-4505 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4514        TCGA-49-6742 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-49-6767 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5072        TCGA-50-5931        TCGA-50-5939 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-6590        TCGA-55-1596 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-55-6543        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-73-4658 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-75-5122 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-75-5125        TCGA-75-5126        TCGA-75-6203        TCGA-75-6206 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-75-6207        TCGA-75-6211        TCGA-80-5611        TCGA-91-6829 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
D170V12, continuous
[1] "Remove cluster labels:" "CLEC12B MUTATED"       
clus
  CLEC12B MUTATED CLEC12B WILD-TYPE 
                1                67 
       TCGA-05-4384        TCGA-05-4390        TCGA-05-4396        TCGA-05-4405 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4410        TCGA-05-4415        TCGA-05-4417        TCGA-05-4424 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4433        TCGA-05-5420        TCGA-05-5423 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-5425        TCGA-05-5428        TCGA-35-4122        TCGA-35-4123 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-35-5375        TCGA-38-4625        TCGA-38-4626        TCGA-44-2655 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2659        TCGA-44-2662        TCGA-44-2666 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4494        TCGA-49-4505        TCGA-55-1592 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-55-1594        TCGA-55-1595        TCGA-55-1596        TCGA-55-5899 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-64-1677        TCGA-64-1678 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-73-4659        TCGA-73-4662 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-73-4676        TCGA-91-6829        TCGA-91-6836 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
                   vv
clus                 R0  R1  R2  RX
  CLEC12B MUTATED     3   0   0   0
  CLEC12B WILD-TYPE 112   6   4   9
D170V13, multiclass
    clus
vv   CLEC12B MUTATED CLEC12B WILD-TYPE
  R0               3               112
  R1               0                 6
  R2               0                 4
  RX               0                 9

Clustering(171) Variable = DYDC2 MUTATION ANALYSIS
D171V1, survival
                 sevent
clus2              0  1
  DYDC2 MUTATED    2  1
  DYDC2 WILD-TYPE 97 55
  DYDC2 MUTATED DYDC2 WILD-TYPE 
              3             152 
  DYDC2 MUTATED DYDC2 WILD-TYPE 
              1              55 
$`DYDC2 MUTATED`
TCGA-05-4389 TCGA-35-3615 TCGA-44-2668 
       45.01         0.46         8.09 

$`DYDC2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       50.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 
       15.02         4.96        28.96        22.03         0.99         2.04 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61        14.73 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       21.93        46.98        13.15        44.94        24.36        42.08 
TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
       42.77         3.19        37.15        38.24        23.51         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
       23.74        13.71        12.59        13.38        10.78         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
       27.78        11.90         5.42        12.16        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
        5.16        55.89        15.02        12.13        29.26        17.13 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        70.55        14.96        25.81        31.04 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12        18.64        29.00        25.12 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       22.55        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        87.98         2.04        42.90        28.41 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       51.25        28.44         0.99        20.02        18.84        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
       12.66         5.69         4.60        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        26.27        15.35         4.27         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        5.39         1.25        12.36        10.62        41.33        10.16 
TCGA-91-6835 TCGA-91-6836 
        2.60        13.71 

  DYDC2 MUTATED DYDC2 WILD-TYPE 
           0.46            0.07 
  DYDC2 MUTATED DYDC2 WILD-TYPE 
          45.01          120.79 
  DYDC2 MUTATED DYDC2 WILD-TYPE 
           8.09           21.06 
[1] "0.5 - 45.0 (8.1)"   "0.1 - 120.8 (21.1)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
  "DYDC2 MUTATED" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
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"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
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"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
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"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
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"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
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"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
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"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE"   "DYDC2 MUTATED" 
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"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
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"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
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"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
  "DYDC2 MUTATED" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
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"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
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"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
  "DYDC2 MUTATED" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE"   "DYDC2 MUTATED" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
  "DYDC2 MUTATED" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
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"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
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"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
  "DYDC2 MUTATED" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE"   "DYDC2 MUTATED" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
  "DYDC2 MUTATED" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
[1] "hr=" "1.3"
D171V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  DYDC2 MUTATED          1        2         0         0          0          0
  DYDC2 WILD-TYPE       36       51        11        23         33          6
                 vv
clus              STAGE IV
  DYDC2 MUTATED          0
  DYDC2 WILD-TYPE        9
D171V3, multiclass
                 vv
clus               T1  T2  T3  T4
  DYDC2 MUTATED     1   2   0   0
  DYDC2 WILD-TYPE  40 107  14   8
D171V4, multiclass
    clus
vv   DYDC2 MUTATED DYDC2 WILD-TYPE
  T1             1              40
  T2             2             107
  T3             0              14
  T4             0               8
                 vv
clus              N0 N1 N2+N3
  DYDC2 MUTATED    3  0     0
  DYDC2 WILD-TYPE 92 37    35
D171V5, multiclass
       clus
vv      DYDC2 MUTATED DYDC2 WILD-TYPE
  N0                3              92
  N1                0              37
  N2+N3             0              35
                 vv
clus               M0  M1  MX
  DYDC2 MUTATED     3   0   0
  DYDC2 WILD-TYPE 140   9  18
D171V6, multiclass
    clus
vv   DYDC2 MUTATED DYDC2 WILD-TYPE
  M0             3             140
  M1             0               9
  MX             0              18
D171V7, binary
                 cls
clus               0  1
  DYDC2 MUTATED    0  3
  DYDC2 WILD-TYPE 93 76
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DYDC2 MUTATED      0    3
  DYDC2 WILD-TYPE   93   76
        clus
vv       DYDC2 MUTATED DYDC2 WILD-TYPE
  FEMALE             0              93
  MALE               3              76
D171V8, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  DYDC2 MUTATED                            0                                 1
  DYDC2 WILD-TYPE                          2                                38
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  DYDC2 MUTATED                                                    2
  DYDC2 WILD-TYPE                                                113
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  DYDC2 MUTATED                                            0
  DYDC2 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  DYDC2 MUTATED                                               0
  DYDC2 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  DYDC2 MUTATED                                0
  DYDC2 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  DYDC2 MUTATED                                    0
  DYDC2 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  DYDC2 MUTATED                              0                             0
  DYDC2 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  DYDC2 MUTATED                                               0
  DYDC2 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  DYDC2 MUTATED                              0
  DYDC2 WILD-TYPE                            2
D171V9, multiclass
D171V10, binary
                 cls
clus                0   1
  DYDC2 MUTATED     0   3
  DYDC2 WILD-TYPE  14 155
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DYDC2 MUTATED      0    3
  DYDC2 WILD-TYPE   14  155
     clus
vv    DYDC2 MUTATED DYDC2 WILD-TYPE
  NO              0              14
  YES             3             155
D171V11, continuous
[1] "Remove cluster labels:" "DYDC2 MUTATED"         
clus
  DYDC2 MUTATED DYDC2 WILD-TYPE 
              2             110 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-05-4382 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4405      TCGA-05-4410      TCGA-05-4415 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4417      TCGA-05-4418      TCGA-05-4420      TCGA-05-4422 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4424      TCGA-05-4425      TCGA-05-4426      TCGA-05-4427 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4430      TCGA-05-4432      TCGA-05-4433      TCGA-05-4434 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-5420      TCGA-05-5423      TCGA-05-5425      TCGA-05-5428 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4629      TCGA-38-4631      TCGA-38-4632 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-2662      TCGA-44-2666      TCGA-44-3396      TCGA-44-3398 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-3918      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6148 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-49-4490      TCGA-49-4494      TCGA-49-4505      TCGA-49-4506 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-49-4507      TCGA-49-4510      TCGA-49-4514      TCGA-49-6742 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-49-6767 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-5051      TCGA-50-5072      TCGA-50-5931      TCGA-50-5939 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-5941      TCGA-50-5942      TCGA-50-6590      TCGA-55-1596 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-55-6543      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-73-4658 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-75-5122 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-75-5125      TCGA-75-5126      TCGA-75-6203      TCGA-75-6206 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-75-6207      TCGA-75-6211      TCGA-80-5611      TCGA-91-6829 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-91-6835      TCGA-91-6836 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
D171V12, continuous
[1] "Remove cluster labels:" "DYDC2 MUTATED"         
clus
  DYDC2 MUTATED DYDC2 WILD-TYPE 
              1              67 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4396      TCGA-05-4405 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4410      TCGA-05-4415      TCGA-05-4417      TCGA-05-4424 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4433      TCGA-05-5420      TCGA-05-5423 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-5425      TCGA-05-5428      TCGA-35-4122      TCGA-35-4123 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-35-5375      TCGA-38-4625      TCGA-38-4626      TCGA-44-2655 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2662 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5645      TCGA-44-6144      TCGA-44-6145 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-6147      TCGA-44-6148      TCGA-44-6774      TCGA-44-6775 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-6776      TCGA-44-6777      TCGA-44-6778      TCGA-44-6779 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-49-4486      TCGA-49-4494      TCGA-49-4505      TCGA-55-1592 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1595      TCGA-55-1596      TCGA-55-5899 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-55-6642      TCGA-55-6712      TCGA-64-1677      TCGA-64-1678 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-73-4659      TCGA-73-4662 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4668      TCGA-73-4670      TCGA-73-4675 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-73-4676      TCGA-91-6829      TCGA-91-6836 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
                 vv
clus               R0  R1  R2  RX
  DYDC2 MUTATED     3   0   0   0
  DYDC2 WILD-TYPE 112   6   4   9
D171V13, multiclass
    clus
vv   DYDC2 MUTATED DYDC2 WILD-TYPE
  R0             3             112
  R1             0               6
  R2             0               4
  RX             0               9

Clustering(172) Variable = AKR1B10 MUTATION ANALYSIS
D172V1, survival
                   sevent
clus2                0  1
  AKR1B10 MUTATED    1  2
  AKR1B10 WILD-TYPE 98 54
  AKR1B10 MUTATED AKR1B10 WILD-TYPE 
                3               152 
  AKR1B10 MUTATED AKR1B10 WILD-TYPE 
                2                54 
$`AKR1B10 MUTATED`
TCGA-44-6777 TCGA-49-6743 TCGA-91-6829 
       32.45        12.13        41.33 

$`AKR1B10 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       21.99        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 
       15.02        15.02         4.96        28.96        22.03         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        97.74 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
      120.79        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61        14.73        21.93        46.98        13.15        44.94 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
       24.36        42.08        42.77         3.19         8.09        37.15 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
       38.24        23.51         6.21        23.74        13.71        12.59 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
       13.38        10.78         9.93        27.78        11.90         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       12.16        63.72        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 
        8.81        29.46         5.16        55.89        15.02        29.26 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
       17.13        20.48        71.47        70.55        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       31.04        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12        18.64        29.00 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       25.12        22.55        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        87.98         2.04        42.90 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       28.41        51.25        28.44         0.99        20.02        18.84 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
       14.04        12.66         5.69         4.60        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        26.27        15.35         4.27 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6831 
        1.32         5.39         1.25        12.36        10.62        10.16 
TCGA-91-6835 TCGA-91-6836 
        2.60        13.71 

  AKR1B10 MUTATED AKR1B10 WILD-TYPE 
            12.13              0.07 
  AKR1B10 MUTATED AKR1B10 WILD-TYPE 
            41.33            120.79 
  AKR1B10 MUTATED AKR1B10 WILD-TYPE 
           32.450            20.565 
[1] "12.1 - 41.3 (32.5)" "0.1 - 120.8 (20.6)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
  "AKR1B10 MUTATED" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
  "AKR1B10 MUTATED" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE"   "AKR1B10 MUTATED" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
  "AKR1B10 MUTATED" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
  "AKR1B10 MUTATED" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE"   "AKR1B10 MUTATED" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
  "AKR1B10 MUTATED" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
  "AKR1B10 MUTATED" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE"   "AKR1B10 MUTATED" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
[1] "hr=" "1.7"
D172V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  AKR1B10 MUTATED          0        3         0         0          1          0
  AKR1B10 WILD-TYPE       37       50        11        23         32          6
                   vv
clus                STAGE IV
  AKR1B10 MUTATED          0
  AKR1B10 WILD-TYPE        9
D172V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  AKR1B10 MUTATED     1   3   0   0
  AKR1B10 WILD-TYPE  40 106  14   8
D172V4, multiclass
    clus
vv   AKR1B10 MUTATED AKR1B10 WILD-TYPE
  T1               1                40
  T2               3               106
  T3               0                14
  T4               0                 8
                   vv
clus                N0 N1 N2+N3
  AKR1B10 MUTATED    2  0     1
  AKR1B10 WILD-TYPE 93 37    34
D172V5, multiclass
       clus
vv      AKR1B10 MUTATED AKR1B10 WILD-TYPE
  N0                  2                93
  N1                  0                37
  N2+N3               1                34
                   vv
clus                 M0  M1  MX
  AKR1B10 MUTATED     1   0   3
  AKR1B10 WILD-TYPE 142   9  15
D172V6, multiclass
    clus
vv   AKR1B10 MUTATED AKR1B10 WILD-TYPE
  M0               1               142
  M1               0                 9
  MX               3                15
D172V7, binary
                   cls
clus                 0  1
  AKR1B10 MUTATED    2  2
  AKR1B10 WILD-TYPE 91 77
[1] "tbl2"
                   cls
clus                [,1] [,2]
  AKR1B10 MUTATED      2    2
  AKR1B10 WILD-TYPE   91   77
        clus
vv       AKR1B10 MUTATED AKR1B10 WILD-TYPE
  FEMALE               2                91
  MALE                 2                77
D172V8, continuous
[1] "Remove cluster labels:" "AKR1B10 MUTATED"       
clus
  AKR1B10 MUTATED AKR1B10 WILD-TYPE 
                1                11 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-64-1677 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-64-5778        TCGA-71-6725        TCGA-73-4659        TCGA-73-4662 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4676 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  AKR1B10 MUTATED                            0
  AKR1B10 WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  AKR1B10 MUTATED                                   0
  AKR1B10 WILD-TYPE                                39
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  AKR1B10 MUTATED                                                    2
  AKR1B10 WILD-TYPE                                                113
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  AKR1B10 MUTATED                                            0
  AKR1B10 WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  AKR1B10 MUTATED                                               1
  AKR1B10 WILD-TYPE                                             1
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  AKR1B10 MUTATED                                1
  AKR1B10 WILD-TYPE                              1
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  AKR1B10 MUTATED                                    0
  AKR1B10 WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  AKR1B10 MUTATED                              0                             0
  AKR1B10 WILD-TYPE                            2                             4
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  AKR1B10 MUTATED                                               0
  AKR1B10 WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  AKR1B10 MUTATED                              0
  AKR1B10 WILD-TYPE                            2
D172V9, multiclass
D172V10, binary
                   cls
clus                  0   1
  AKR1B10 MUTATED     1   3
  AKR1B10 WILD-TYPE  13 155
[1] "tbl2"
                   cls
clus                [,1] [,2]
  AKR1B10 MUTATED      1    3
  AKR1B10 WILD-TYPE   13  155
     clus
vv    AKR1B10 MUTATED AKR1B10 WILD-TYPE
  NO                1                13
  YES               3               155
D172V11, continuous
D172V12, continuous
[1] "Remove cluster labels:" "AKR1B10 MUTATED"       
clus
  AKR1B10 MUTATED AKR1B10 WILD-TYPE 
                2                66 
       TCGA-05-4384        TCGA-05-4390        TCGA-05-4396        TCGA-05-4405 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4410        TCGA-05-4415        TCGA-05-4417        TCGA-05-4424 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4433        TCGA-05-5420        TCGA-05-5423 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-5425        TCGA-05-5428        TCGA-35-4122        TCGA-35-4123 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-35-5375        TCGA-38-4625        TCGA-38-4626        TCGA-44-2655 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2657        TCGA-44-2659        TCGA-44-2662 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-3918        TCGA-44-4112        TCGA-44-5645        TCGA-44-6144 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6778        TCGA-44-6779 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4494        TCGA-49-4505        TCGA-55-1592 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-55-1594        TCGA-55-1595        TCGA-55-1596        TCGA-55-5899 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-64-1677        TCGA-64-1678 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-73-4659        TCGA-73-4662 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-73-4676        TCGA-91-6836 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
                   vv
clus                 R0  R1  R2  RX
  AKR1B10 MUTATED     2   0   0   0
  AKR1B10 WILD-TYPE 113   6   4   9
D172V13, multiclass
[1] "Remove cluster labels:" "AKR1B10 MUTATED"       
clus
  AKR1B10 MUTATED AKR1B10 WILD-TYPE 
                2               132 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-05-4382 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4384        TCGA-05-4389        TCGA-05-4390        TCGA-05-4395 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4396        TCGA-05-4397        TCGA-05-4398        TCGA-05-4402 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4403        TCGA-05-4405        TCGA-05-4410        TCGA-05-4415 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4417        TCGA-05-4418        TCGA-05-4420        TCGA-05-4422 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4424        TCGA-05-4425        TCGA-05-4426        TCGA-05-4427 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-4430        TCGA-05-4432        TCGA-05-4433        TCGA-05-4434 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-5420        TCGA-05-5423        TCGA-05-5425        TCGA-05-5428 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-44-2655 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6148        TCGA-44-6775        TCGA-49-4486 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4494        TCGA-49-4501 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-49-4505        TCGA-49-4506        TCGA-49-4507        TCGA-49-4510 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6744 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-49-6767        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5942        TCGA-50-5944        TCGA-50-6593 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1596 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6642        TCGA-64-1676        TCGA-64-1677 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1680        TCGA-64-5774        TCGA-64-5775 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-67-3770        TCGA-67-3771        TCGA-67-3773        TCGA-67-3774 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-67-4679        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-73-4676        TCGA-73-4677        TCGA-75-5125        TCGA-75-5126 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-75-5146        TCGA-75-5147        TCGA-75-6203        TCGA-75-6205 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-75-6206        TCGA-75-6207        TCGA-75-6211        TCGA-75-6212 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 
       TCGA-80-5611        TCGA-86-6562        TCGA-91-6828        TCGA-91-6835 
"AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" "AKR1B10 WILD-TYPE" 

Clustering(173) Variable = CMA1 MUTATION ANALYSIS
D173V1, survival
                sevent
clus2             0  1
  CMA1 MUTATED    1  1
  CMA1 WILD-TYPE 98 55
  CMA1 MUTATED CMA1 WILD-TYPE 
             2            153 
  CMA1 MUTATED CMA1 WILD-TYPE 
             1             55 
$`CMA1 MUTATED`
TCGA-05-4396 TCGA-64-1678 
        9.96        39.09 

$`CMA1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 
       15.02         4.96        28.96        22.03         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        97.74       120.79 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       14.73        21.93        46.98        13.15        44.94        24.36 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       42.08        42.77         3.19         8.09        37.15        38.24 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
       23.51         6.21        23.74        13.71        12.59        13.38 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
       10.78         9.93        27.78        11.90         5.42        12.16 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46         5.16        55.89        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       29.26        17.13        20.48        71.47        70.55        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81        31.04        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12        18.64 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
       29.00        25.12        22.55        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       56.81        20.65        37.02        87.98         2.04        42.90 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       28.41        51.25        28.44         0.99        20.02        18.84 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
       14.04        12.66         5.69         4.60        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        26.27        15.35         4.27 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 
        1.32         5.39         1.25        12.36        10.62        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       10.16         2.60        13.71 

  CMA1 MUTATED CMA1 WILD-TYPE 
          9.96           0.07 
  CMA1 MUTATED CMA1 WILD-TYPE 
         39.09         120.79 
  CMA1 MUTATED CMA1 WILD-TYPE 
        24.525         20.650 
[1] "10.0 - 39.1 (24.5)" "0.1 - 120.8 (20.6)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE"   "CMA1 MUTATED" "CMA1 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE"   "CMA1 MUTATED" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE"   "CMA1 MUTATED" "CMA1 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE"   "CMA1 MUTATED" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE"   "CMA1 MUTATED" "CMA1 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE"   "CMA1 MUTATED" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
[1] "Remove cluster labels:" "CMA1 MUTATED"          
clus
  CMA1 MUTATED CMA1 WILD-TYPE 
             2            153 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4397     TCGA-05-4398 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-4402     TCGA-05-4403     TCGA-05-4405     TCGA-05-4415 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-4417     TCGA-05-4418     TCGA-05-4420     TCGA-05-4422 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-4424     TCGA-05-4425     TCGA-05-4426     TCGA-05-4427 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-4430     TCGA-05-4432     TCGA-05-4433     TCGA-05-4434 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-5420     TCGA-05-5423     TCGA-05-5425     TCGA-05-5428 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4628     TCGA-38-4629     TCGA-38-4630 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-38-4631     TCGA-38-4632     TCGA-38-6178     TCGA-44-2655 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2657     TCGA-44-2659     TCGA-44-2661 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-2662     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4494     TCGA-49-4501 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-49-4505     TCGA-49-4506     TCGA-49-4507     TCGA-49-4510 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-50-5044     TCGA-50-5045 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-55-1592     TCGA-55-1594     TCGA-55-1595     TCGA-55-1596 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1680     TCGA-64-5774 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-64-5775     TCGA-64-5778     TCGA-64-5779     TCGA-64-5781 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-64-5815     TCGA-67-3770     TCGA-67-3771     TCGA-67-3772 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-67-3773     TCGA-67-3774     TCGA-67-6215     TCGA-67-6216 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-67-6217     TCGA-71-6725     TCGA-73-4658     TCGA-73-4659 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-73-4662     TCGA-73-4666     TCGA-73-4668     TCGA-73-4670 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-73-4675     TCGA-73-4676     TCGA-73-4677     TCGA-86-6562 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-91-6836 
"CMA1 WILD-TYPE" 
D173V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  CMA1 MUTATED          0        1         1         0          1          1
  CMA1 WILD-TYPE       37       52        10        23         32          5
                vv
clus             STAGE IV
  CMA1 MUTATED          0
  CMA1 WILD-TYPE        9
D173V3, multiclass
                vv
clus              T1  T2  T3  T4
  CMA1 MUTATED     0   1   2   1
  CMA1 WILD-TYPE  41 108  12   7
D173V4, multiclass
    clus
vv   CMA1 MUTATED CMA1 WILD-TYPE
  T1            0             41
  T2            1            108
  T3            2             12
  T4            1              7
                vv
clus             N0 N1 N2+N3
  CMA1 MUTATED    2  1     1
  CMA1 WILD-TYPE 93 36    34
D173V5, multiclass
       clus
vv      CMA1 MUTATED CMA1 WILD-TYPE
  N0               2             93
  N1               1             36
  N2+N3            1             34
                vv
clus              M0  M1  MX
  CMA1 MUTATED     4   0   0
  CMA1 WILD-TYPE 139   9  18
D173V6, multiclass
    clus
vv   CMA1 MUTATED CMA1 WILD-TYPE
  M0            4            139
  M1            0              9
  MX            0             18
D173V7, binary
                cls
clus              0  1
  CMA1 MUTATED    2  2
  CMA1 WILD-TYPE 91 77
[1] "tbl2"
                cls
clus             [,1] [,2]
  CMA1 MUTATED      2    2
  CMA1 WILD-TYPE   91   77
        clus
vv       CMA1 MUTATED CMA1 WILD-TYPE
  FEMALE            2             91
  MALE              2             77
D173V8, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  CMA1 MUTATED                            0                                 1
  CMA1 WILD-TYPE                          2                                38
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CMA1 MUTATED                                                    2
  CMA1 WILD-TYPE                                                113
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  CMA1 MUTATED                                            0
  CMA1 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  CMA1 MUTATED                                               0
  CMA1 WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  CMA1 MUTATED                                0
  CMA1 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  CMA1 MUTATED                                    0
  CMA1 WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  CMA1 MUTATED                              0                             1
  CMA1 WILD-TYPE                            2                             3
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  CMA1 MUTATED                                               0
  CMA1 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  CMA1 MUTATED                              0
  CMA1 WILD-TYPE                            2
D173V9, multiclass
D173V10, binary
                cls
clus               0   1
  CMA1 MUTATED     0   4
  CMA1 WILD-TYPE  14 154
[1] "tbl2"
                cls
clus             [,1] [,2]
  CMA1 MUTATED      0    4
  CMA1 WILD-TYPE   14  154
     clus
vv    CMA1 MUTATED CMA1 WILD-TYPE
  NO             0             14
  YES            4            154
D173V11, continuous
D173V12, continuous
[1] "Remove cluster labels:" "CMA1 MUTATED"          
clus
  CMA1 MUTATED CMA1 WILD-TYPE 
             2             66 
    TCGA-05-4384     TCGA-05-4390     TCGA-05-4405     TCGA-05-4410 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4424     TCGA-05-4427 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-4433     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-5428     TCGA-35-4122     TCGA-35-4123     TCGA-35-5375 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-38-4625     TCGA-38-4626     TCGA-44-2655     TCGA-44-2656 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2659     TCGA-44-2662     TCGA-44-2666 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5645     TCGA-44-6144     TCGA-44-6145 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-6147     TCGA-44-6148     TCGA-44-6774     TCGA-44-6775 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-6776     TCGA-44-6777     TCGA-44-6778     TCGA-44-6779 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-49-4486     TCGA-49-4494     TCGA-49-4505     TCGA-55-1592 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-55-1594     TCGA-55-1595     TCGA-55-1596     TCGA-55-5899 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-55-6642     TCGA-55-6712     TCGA-64-1677     TCGA-64-1680 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-64-5781     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-91-6829     TCGA-91-6836 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
                vv
clus              R0  R1  R2  RX
  CMA1 MUTATED     3   0   1   0
  CMA1 WILD-TYPE 112   6   3   9
D173V13, multiclass
    clus
vv   CMA1 MUTATED CMA1 WILD-TYPE
  R0            3            112
  R1            0              6
  R2            1              3
  RX            0              9

Clustering(174) Variable = KRTAP1-5 MUTATION ANALYSIS
D174V1, survival
                    sevent
clus2                 0  1
  KRTAP1-5 MUTATED    4  3
  KRTAP1-5 WILD-TYPE 95 53
  KRTAP1-5 MUTATED KRTAP1-5 WILD-TYPE 
                 7                148 
  KRTAP1-5 MUTATED KRTAP1-5 WILD-TYPE 
                 3                 53 
$`KRTAP1-5 MUTATED`
TCGA-05-4405 TCGA-05-5428 TCGA-44-5643 TCGA-44-6146 TCGA-49-4490 TCGA-50-6591 
       20.05        22.03        13.71         9.93        12.66         3.88 
TCGA-64-5775 
        2.04 

$`KRTAP1-5 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4415 
        9.96        24.03        47.05         8.02        19.00         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
       15.02         4.96        28.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61        14.73 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       21.93        46.98        13.15        44.94        24.36        42.08 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       42.77         3.19         8.09        37.15        38.24        23.51 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6147 
        6.21        23.74        12.59        13.38        10.78        27.78 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
       11.90         5.42        12.16        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4494 TCGA-49-4501 
       16.41        76.21        28.11        28.57        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46         5.16        55.89 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        29.26        17.13        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       70.55        14.96        25.81        31.04        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12        18.64        29.00        25.12        22.55        42.31 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 
       25.51        11.05        12.16         6.21        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        87.98 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       42.90        28.41        51.25        28.44         0.99        20.02 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
       18.84        14.04        12.66         5.69         4.60        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        26.27        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 
        4.27         1.32         5.39         1.25        12.36        10.62 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33        10.16         2.60        13.71 

  KRTAP1-5 MUTATED KRTAP1-5 WILD-TYPE 
              2.04               0.07 
  KRTAP1-5 MUTATED KRTAP1-5 WILD-TYPE 
             22.03             120.79 
  KRTAP1-5 MUTATED KRTAP1-5 WILD-TYPE 
             12.66              21.96 
[1] "2.0 - 22.0 (12.7)"  "0.1 - 120.8 (22.0)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE"   "KRTAP1-5 MUTATED" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"KRTAP1-5 WILD-TYPE"   "KRTAP1-5 MUTATED" "KRTAP1-5 WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-44-2655 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5645 
"KRTAP1-5 WILD-TYPE"   "KRTAP1-5 MUTATED" "KRTAP1-5 WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE"   "KRTAP1-5 MUTATED" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-49-4486 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE"   "KRTAP1-5 MUTATED" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-50-5044         TCGA-50-5045         TCGA-50-5049 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-50-5051         TCGA-50-5055         TCGA-50-5066 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-50-5068         TCGA-50-5072         TCGA-50-5930 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-50-5931         TCGA-50-5932         TCGA-50-5933 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-50-5935         TCGA-50-5936         TCGA-50-5939 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-50-5941         TCGA-50-5942         TCGA-50-5944 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-50-5946         TCGA-50-6590         TCGA-50-6591 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE"   "KRTAP1-5 MUTATED" 
        TCGA-50-6592         TCGA-50-6593         TCGA-50-6594 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-50-6595         TCGA-50-6597         TCGA-55-1592 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-55-6712         TCGA-64-1676         TCGA-64-1677 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1680         TCGA-64-5774 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
  "KRTAP1-5 MUTATED" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-67-6217         TCGA-71-6725         TCGA-73-4658 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-73-4659         TCGA-73-4662         TCGA-73-4666 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-73-4668         TCGA-73-4670         TCGA-73-4675 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-73-4676         TCGA-73-4677         TCGA-86-6562 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE"   "KRTAP1-5 MUTATED" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"KRTAP1-5 WILD-TYPE"   "KRTAP1-5 MUTATED" "KRTAP1-5 WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-44-2655 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5645 
"KRTAP1-5 WILD-TYPE"   "KRTAP1-5 MUTATED" "KRTAP1-5 WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE"   "KRTAP1-5 MUTATED" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-49-4486 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE"   "KRTAP1-5 MUTATED" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-50-5044         TCGA-50-5045         TCGA-50-5049 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-50-5051         TCGA-50-5055         TCGA-50-5066 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-50-5068         TCGA-50-5072         TCGA-50-5930 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-50-5931         TCGA-50-5932         TCGA-50-5933 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-50-5935         TCGA-50-5936         TCGA-50-5939 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-50-5941         TCGA-50-5942         TCGA-50-5944 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-50-5946         TCGA-50-6590         TCGA-50-6591 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE"   "KRTAP1-5 MUTATED" 
        TCGA-50-6592         TCGA-50-6593         TCGA-50-6594 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-50-6595         TCGA-50-6597         TCGA-55-1592 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-55-6712         TCGA-64-1676         TCGA-64-1677 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1680         TCGA-64-5774 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
  "KRTAP1-5 MUTATED" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-67-6217         TCGA-71-6725         TCGA-73-4658 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-73-4659         TCGA-73-4662         TCGA-73-4666 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-73-4668         TCGA-73-4670         TCGA-73-4675 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-73-4676         TCGA-73-4677         TCGA-86-6562 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE"   "KRTAP1-5 MUTATED" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"KRTAP1-5 WILD-TYPE"   "KRTAP1-5 MUTATED" "KRTAP1-5 WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-44-2655 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5645 
"KRTAP1-5 WILD-TYPE"   "KRTAP1-5 MUTATED" "KRTAP1-5 WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE"   "KRTAP1-5 MUTATED" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-49-4486 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE"   "KRTAP1-5 MUTATED" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-50-5044         TCGA-50-5045         TCGA-50-5049 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-50-5051         TCGA-50-5055         TCGA-50-5066 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-50-5068         TCGA-50-5072         TCGA-50-5930 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-50-5931         TCGA-50-5932         TCGA-50-5933 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-50-5935         TCGA-50-5936         TCGA-50-5939 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-50-5941         TCGA-50-5942         TCGA-50-5944 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-50-5946         TCGA-50-6590         TCGA-50-6591 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE"   "KRTAP1-5 MUTATED" 
        TCGA-50-6592         TCGA-50-6593         TCGA-50-6594 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-50-6595         TCGA-50-6597         TCGA-55-1592 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-55-6712         TCGA-64-1676         TCGA-64-1677 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1680         TCGA-64-5774 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
  "KRTAP1-5 MUTATED" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-67-6217         TCGA-71-6725         TCGA-73-4658 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-73-4659         TCGA-73-4662         TCGA-73-4666 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-73-4668         TCGA-73-4670         TCGA-73-4675 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-73-4676         TCGA-73-4677         TCGA-86-6562 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"KRTAP1-5 WILD-TYPE" "KRTAP1-5 WILD-TYPE" 
[1] "hr=" "3"  
D174V2, continuous
                    vv
clus                 STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  KRTAP1-5 MUTATED          0        1         1         1          3
  KRTAP1-5 WILD-TYPE       37       52        10        22         30
                    vv
clus                 STAGE IIIB STAGE IV
  KRTAP1-5 MUTATED            0        1
  KRTAP1-5 WILD-TYPE          6        8
D174V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  KRTAP1-5 MUTATED     1   3   2   1
  KRTAP1-5 WILD-TYPE  40 106  12   7
D174V4, multiclass
    clus
vv   KRTAP1-5 MUTATED KRTAP1-5 WILD-TYPE
  T1                1                 40
  T2                3                106
  T3                2                 12
  T4                1                  7
                    vv
clus                 N0 N1 N2+N3
  KRTAP1-5 MUTATED    4  1     2
  KRTAP1-5 WILD-TYPE 91 36    33
D174V5, multiclass
       clus
vv      KRTAP1-5 MUTATED KRTAP1-5 WILD-TYPE
  N0                   4                 91
  N1                   1                 36
  N2+N3                2                 33
                    vv
clus                  M0  M1  MX
  KRTAP1-5 MUTATED     6   1   0
  KRTAP1-5 WILD-TYPE 137   8  18
D174V6, multiclass
    clus
vv   KRTAP1-5 MUTATED KRTAP1-5 WILD-TYPE
  M0                6                137
  M1                1                  8
  MX                0                 18
D174V7, binary
                    cls
clus                  0  1
  KRTAP1-5 MUTATED    3  4
  KRTAP1-5 WILD-TYPE 90 75
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KRTAP1-5 MUTATED      3    4
  KRTAP1-5 WILD-TYPE   90   75
        clus
vv       KRTAP1-5 MUTATED KRTAP1-5 WILD-TYPE
  FEMALE                3                 90
  MALE                  4                 75
D174V8, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  KRTAP1-5 MUTATED                            0
  KRTAP1-5 WILD-TYPE                          2
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  KRTAP1-5 MUTATED                                   2
  KRTAP1-5 WILD-TYPE                                37
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  KRTAP1-5 MUTATED                                                    4
  KRTAP1-5 WILD-TYPE                                                111
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  KRTAP1-5 MUTATED                                            0
  KRTAP1-5 WILD-TYPE                                          1
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  KRTAP1-5 MUTATED                                               0
  KRTAP1-5 WILD-TYPE                                             2
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  KRTAP1-5 MUTATED                                0
  KRTAP1-5 WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  KRTAP1-5 MUTATED                                    0
  KRTAP1-5 WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  KRTAP1-5 MUTATED                              1                             0
  KRTAP1-5 WILD-TYPE                            1                             4
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  KRTAP1-5 MUTATED                                               0
  KRTAP1-5 WILD-TYPE                                             1
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  KRTAP1-5 MUTATED                              0
  KRTAP1-5 WILD-TYPE                            2
D174V9, multiclass
D174V10, binary
                    cls
clus                   0   1
  KRTAP1-5 MUTATED     1   6
  KRTAP1-5 WILD-TYPE  13 152
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KRTAP1-5 MUTATED      1    6
  KRTAP1-5 WILD-TYPE   13  152
     clus
vv    KRTAP1-5 MUTATED KRTAP1-5 WILD-TYPE
  NO                 1                 13
  YES                6                152
D174V11, continuous
D174V12, continuous
                    vv
clus                  R0  R1  R2  RX
  KRTAP1-5 MUTATED     3   0   0   0
  KRTAP1-5 WILD-TYPE 112   6   4   9
D174V13, multiclass
    clus
vv   KRTAP1-5 MUTATED KRTAP1-5 WILD-TYPE
  R0                3                112
  R1                0                  6
  R2                0                  4
  RX                0                  9

Clustering(175) Variable = STX2 MUTATION ANALYSIS
D175V1, survival
                sevent
clus2             0  1
  STX2 MUTATED    3  1
  STX2 WILD-TYPE 96 55
  STX2 MUTATED STX2 WILD-TYPE 
             4            151 
  STX2 MUTATED STX2 WILD-TYPE 
             1             55 
$`STX2 MUTATED`
TCGA-05-4396 TCGA-35-4123 TCGA-44-6774 TCGA-50-5066 
        9.96         5.95         5.42        31.04 

$`STX2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 
       15.02         4.96        28.96        22.03         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61        14.73 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       21.93        46.98        13.15        44.94        24.36        42.08 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       42.77         3.19         8.09        37.15        38.24        23.51 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21        23.74        13.71        12.59        13.38        10.78 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        9.93        27.78        11.90        12.16        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
        5.16        55.89        15.02        12.13        29.26        17.13 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 
       20.48        71.47        70.55        14.96        25.81        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12        18.64        29.00        25.12        22.55 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        87.98         2.04        42.90        28.41        51.25 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       28.44         0.99        20.02        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        5.69         4.60        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        26.27        15.35         4.27         1.32         5.39 
TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.25        12.36        10.62        41.33        10.16         2.60 
TCGA-91-6836 
       13.71 

  STX2 MUTATED STX2 WILD-TYPE 
          5.42           0.07 
  STX2 MUTATED STX2 WILD-TYPE 
         31.04         120.79 
  STX2 MUTATED STX2 WILD-TYPE 
         7.955         21.470 
[1] "5.4 - 31.0 (8.0)"   "0.1 - 120.8 (21.5)"
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"STX2 WILD-TYPE" "STX2 WILD-TYPE"   "STX2 MUTATED" "STX2 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"STX2 WILD-TYPE"   "STX2 MUTATED" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"STX2 WILD-TYPE"   "STX2 MUTATED" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
  "STX2 MUTATED" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"STX2 WILD-TYPE" "STX2 WILD-TYPE"   "STX2 MUTATED" "STX2 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"STX2 WILD-TYPE"   "STX2 MUTATED" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"STX2 WILD-TYPE"   "STX2 MUTATED" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
  "STX2 MUTATED" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"STX2 WILD-TYPE" "STX2 WILD-TYPE"   "STX2 MUTATED" "STX2 WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"STX2 WILD-TYPE"   "STX2 MUTATED" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"STX2 WILD-TYPE"   "STX2 MUTATED" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
  "STX2 MUTATED" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
[1] "hr=" "1.5"
D175V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  STX2 MUTATED          1        1         0         0          1          1
  STX2 WILD-TYPE       36       52        11        23         32          5
                vv
clus             STAGE IV
  STX2 MUTATED          0
  STX2 WILD-TYPE        9
D175V3, multiclass
                vv
clus              T1  T2  T3  T4
  STX2 MUTATED     2   1   0   1
  STX2 WILD-TYPE  39 108  14   7
D175V4, multiclass
    clus
vv   STX2 MUTATED STX2 WILD-TYPE
  T1            2             39
  T2            1            108
  T3            0             14
  T4            1              7
                vv
clus             N0 N1 N2+N3
  STX2 MUTATED    2  1     1
  STX2 WILD-TYPE 93 36    34
D175V5, multiclass
       clus
vv      STX2 MUTATED STX2 WILD-TYPE
  N0               2             93
  N1               1             36
  N2+N3            1             34
                vv
clus              M0  M1  MX
  STX2 MUTATED     4   0   0
  STX2 WILD-TYPE 139   9  18
D175V6, multiclass
    clus
vv   STX2 MUTATED STX2 WILD-TYPE
  M0            4            139
  M1            0              9
  MX            0             18
D175V7, binary
                cls
clus              0  1
  STX2 MUTATED    1  3
  STX2 WILD-TYPE 92 76
[1] "tbl2"
                cls
clus             [,1] [,2]
  STX2 MUTATED      1    3
  STX2 WILD-TYPE   92   76
        clus
vv       STX2 MUTATED STX2 WILD-TYPE
  FEMALE            1             92
  MALE              3             76
D175V8, continuous
[1] "Remove cluster labels:" "STX2 MUTATED"          
clus
  STX2 MUTATED STX2 WILD-TYPE 
             1             11 
    TCGA-35-4122     TCGA-35-5375     TCGA-64-1677     TCGA-64-5778 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-71-6725     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4676     TCGA-75-5122 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  STX2 MUTATED                            0                                 2
  STX2 WILD-TYPE                          2                                37
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  STX2 MUTATED                                                    2
  STX2 WILD-TYPE                                                113
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  STX2 MUTATED                                            0
  STX2 WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  STX2 MUTATED                                               0
  STX2 WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  STX2 MUTATED                                0
  STX2 WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  STX2 MUTATED                                    0
  STX2 WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  STX2 MUTATED                              0                             0
  STX2 WILD-TYPE                            2                             4
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  STX2 MUTATED                                               0
  STX2 WILD-TYPE                                             1
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  STX2 MUTATED                              0
  STX2 WILD-TYPE                            2
D175V9, multiclass
D175V10, binary
                cls
clus               0   1
  STX2 MUTATED     0   4
  STX2 WILD-TYPE  14 154
[1] "tbl2"
                cls
clus             [,1] [,2]
  STX2 MUTATED      0    4
  STX2 WILD-TYPE   14  154
     clus
vv    STX2 MUTATED STX2 WILD-TYPE
  NO             0             14
  YES            4            154
D175V11, continuous
D175V12, continuous
                vv
clus              R0  R1  R2  RX
  STX2 MUTATED     3   0   0   0
  STX2 WILD-TYPE 112   6   4   9
D175V13, multiclass
    clus
vv   STX2 MUTATED STX2 WILD-TYPE
  R0            3            112
  R1            0              6
  R2            0              4
  RX            0              9

Clustering(176) Variable = AQP10 MUTATION ANALYSIS
D176V1, survival
                 sevent
clus2              0  1
  AQP10 MUTATED    4  1
  AQP10 WILD-TYPE 95 55
  AQP10 MUTATED AQP10 WILD-TYPE 
              5             150 
  AQP10 MUTATED AQP10 WILD-TYPE 
              1              55 
$`AQP10 MUTATED`
TCGA-38-4626 TCGA-44-2665 TCGA-44-2668 TCGA-64-5779 TCGA-64-5781 
      120.79        42.77         8.09        28.41        51.25 

$`AQP10 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       21.99        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 
       15.02        15.02         4.96        28.96        22.03         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        97.74 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       14.73        21.93        46.98        13.15        44.94        24.36 
TCGA-44-2662 TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
       42.08         3.19        37.15        38.24        23.51         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
       23.74        13.71        12.59        13.38        10.78         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
       27.78        11.90         5.42        12.16        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
        5.16        55.89        15.02        12.13        29.26        17.13 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        70.55        14.96        25.81        31.04 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12        18.64        29.00        25.12 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       22.55        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5815 
       39.09        37.02        87.98         2.04        42.90        28.44 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99        20.02        18.84        14.04        12.66         5.69 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        4.60        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       26.27        15.35         4.27         1.32         5.39         1.25 
TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       12.36        10.62        41.33        10.16         2.60        13.71 

  AQP10 MUTATED AQP10 WILD-TYPE 
           8.09            0.07 
  AQP10 MUTATED AQP10 WILD-TYPE 
         120.79           97.74 
  AQP10 MUTATED AQP10 WILD-TYPE 
         42.770          20.265 
[1] "8.1 - 120.8 (42.8)" "0.1 - 97.7 (20.3)" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
  "AQP10 MUTATED" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE"   "AQP10 MUTATED" "AQP10 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
  "AQP10 MUTATED" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
  "AQP10 MUTATED"   "AQP10 MUTATED" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
  "AQP10 MUTATED" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE"   "AQP10 MUTATED" "AQP10 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
  "AQP10 MUTATED" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
  "AQP10 MUTATED"   "AQP10 MUTATED" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
  "AQP10 MUTATED" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE"   "AQP10 MUTATED" "AQP10 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
  "AQP10 MUTATED" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
  "AQP10 MUTATED"   "AQP10 MUTATED" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
[1] "hr=" "3.9"
D176V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  AQP10 MUTATED          0        2         1         1          2          0
  AQP10 WILD-TYPE       37       51        10        22         31          6
                 vv
clus              STAGE IV
  AQP10 MUTATED          0
  AQP10 WILD-TYPE        9
D176V3, multiclass
                 vv
clus               T1  T2  T3  T4
  AQP10 MUTATED     0   5   1   0
  AQP10 WILD-TYPE  41 104  13   8
D176V4, multiclass
    clus
vv   AQP10 MUTATED AQP10 WILD-TYPE
  T1             0              41
  T2             5             104
  T3             1              13
  T4             0               8
                 vv
clus              N0 N1 N2+N3
  AQP10 MUTATED    3  1     2
  AQP10 WILD-TYPE 92 36    33
D176V5, multiclass
       clus
vv      AQP10 MUTATED AQP10 WILD-TYPE
  N0                3              92
  N1                1              36
  N2+N3             2              33
                 vv
clus               M0  M1  MX
  AQP10 MUTATED     6   0   0
  AQP10 WILD-TYPE 137   9  18
D176V6, multiclass
    clus
vv   AQP10 MUTATED AQP10 WILD-TYPE
  M0             6             137
  M1             0               9
  MX             0              18
D176V7, binary
                 cls
clus               0  1
  AQP10 MUTATED    4  2
  AQP10 WILD-TYPE 89 77
[1] "tbl2"
                 cls
clus              [,1] [,2]
  AQP10 MUTATED      4    2
  AQP10 WILD-TYPE   89   77
        clus
vv       AQP10 MUTATED AQP10 WILD-TYPE
  FEMALE             4              89
  MALE               2              77
D176V8, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  AQP10 MUTATED                            1                                 1
  AQP10 WILD-TYPE                          1                                38
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  AQP10 MUTATED                                                    3
  AQP10 WILD-TYPE                                                112
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  AQP10 MUTATED                                            0
  AQP10 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  AQP10 MUTATED                                               0
  AQP10 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  AQP10 MUTATED                                0
  AQP10 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  AQP10 MUTATED                                    0
  AQP10 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  AQP10 MUTATED                              0                             1
  AQP10 WILD-TYPE                            2                             3
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  AQP10 MUTATED                                               0
  AQP10 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  AQP10 MUTATED                              0
  AQP10 WILD-TYPE                            2
D176V9, multiclass
D176V10, binary
                 cls
clus                0   1
  AQP10 MUTATED     1   5
  AQP10 WILD-TYPE  13 153
[1] "tbl2"
                 cls
clus              [,1] [,2]
  AQP10 MUTATED      1    5
  AQP10 WILD-TYPE   13  153
     clus
vv    AQP10 MUTATED AQP10 WILD-TYPE
  NO              1              13
  YES             5             153
D176V11, continuous
D176V12, continuous
                 vv
clus               R0  R1  R2  RX
  AQP10 MUTATED     5   0   1   0
  AQP10 WILD-TYPE 110   6   3   9
D176V13, multiclass
    clus
vv   AQP10 MUTATED AQP10 WILD-TYPE
  R0             5             110
  R1             0               6
  R2             1               3
  RX             0               9

Clustering(177) Variable = P2RX7 MUTATION ANALYSIS
D177V1, survival
                 sevent
clus2              0  1
  P2RX7 MUTATED    3  1
  P2RX7 WILD-TYPE 96 55
  P2RX7 MUTATED P2RX7 WILD-TYPE 
              4             151 
  P2RX7 MUTATED P2RX7 WILD-TYPE 
              1              55 
$`P2RX7 MUTATED`
TCGA-05-4396 TCGA-05-4430 TCGA-49-6743 TCGA-91-6836 
        9.96        25.02        12.13        13.71 

$`P2RX7 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        26.01        25.02        24.00        15.02        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        4.96        28.96        22.03         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61        14.73 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       21.93        46.98        13.15        44.94        24.36        42.08 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       42.77         3.19         8.09        37.15        38.24        23.51 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21        23.74        13.71        12.59        13.38        10.78 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93        27.78        11.90         5.42        12.16        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 
       29.46         5.16        55.89        15.02        29.26        17.13 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        70.55        14.96        25.81        31.04 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12        18.64        29.00        25.12 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       22.55        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 
        2.86         0.07        32.61         0.79        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        87.98         2.04        42.90        28.41 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       51.25        28.44         0.99        20.02        18.84        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
       12.66         5.69         4.60        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        26.27        15.35         4.27         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        5.39         1.25        12.36        10.62        41.33        10.16 
TCGA-91-6835 
        2.60 

  P2RX7 MUTATED P2RX7 WILD-TYPE 
           9.96            0.07 
  P2RX7 MUTATED P2RX7 WILD-TYPE 
          25.02          120.79 
  P2RX7 MUTATED P2RX7 WILD-TYPE 
          12.92           21.47 
[1] "10.0 - 25.0 (12.9)" "0.1 - 120.8 (21.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE"   "P2RX7 MUTATED" "P2RX7 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"P2RX7 WILD-TYPE"   "P2RX7 MUTATED" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
  "P2RX7 MUTATED" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE"   "P2RX7 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE"   "P2RX7 MUTATED" "P2RX7 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"P2RX7 WILD-TYPE"   "P2RX7 MUTATED" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
  "P2RX7 MUTATED" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE"   "P2RX7 MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE"   "P2RX7 MUTATED" "P2RX7 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"P2RX7 WILD-TYPE"   "P2RX7 MUTATED" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
  "P2RX7 MUTATED" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE"   "P2RX7 MUTATED" 
[1] "hr=" "1.3"
D177V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  P2RX7 MUTATED          0        2         0         0          1          1
  P2RX7 WILD-TYPE       37       51        11        23         32          5
                 vv
clus              STAGE IV
  P2RX7 MUTATED          0
  P2RX7 WILD-TYPE        9
D177V3, multiclass
                 vv
clus               T1  T2  T3  T4
  P2RX7 MUTATED     1   2   0   1
  P2RX7 WILD-TYPE  40 107  14   7
D177V4, multiclass
    clus
vv   P2RX7 MUTATED P2RX7 WILD-TYPE
  T1             1              40
  T2             2             107
  T3             0              14
  T4             1               7
                 vv
clus              N0 N1 N2+N3
  P2RX7 MUTATED    2  1     1
  P2RX7 WILD-TYPE 93 36    34
D177V5, multiclass
       clus
vv      P2RX7 MUTATED P2RX7 WILD-TYPE
  N0                2              93
  N1                1              36
  N2+N3             1              34
                 vv
clus               M0  M1  MX
  P2RX7 MUTATED     2   0   2
  P2RX7 WILD-TYPE 141   9  16
D177V6, multiclass
    clus
vv   P2RX7 MUTATED P2RX7 WILD-TYPE
  M0             2             141
  M1             0               9
  MX             2              16
D177V7, binary
                 cls
clus               0  1
  P2RX7 MUTATED    3  1
  P2RX7 WILD-TYPE 90 78
[1] "tbl2"
                 cls
clus              [,1] [,2]
  P2RX7 MUTATED      3    1
  P2RX7 WILD-TYPE   90   78
        clus
vv       P2RX7 MUTATED P2RX7 WILD-TYPE
  FEMALE             3              90
  MALE               1              78
D177V8, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  P2RX7 MUTATED                            0                                 2
  P2RX7 WILD-TYPE                          2                                37
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  P2RX7 MUTATED                                                    1
  P2RX7 WILD-TYPE                                                114
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  P2RX7 MUTATED                                            0
  P2RX7 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  P2RX7 MUTATED                                               0
  P2RX7 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  P2RX7 MUTATED                                1
  P2RX7 WILD-TYPE                              1
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  P2RX7 MUTATED                                    0
  P2RX7 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  P2RX7 MUTATED                              0                             0
  P2RX7 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  P2RX7 MUTATED                                               0
  P2RX7 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  P2RX7 MUTATED                              0
  P2RX7 WILD-TYPE                            2
D177V9, multiclass
D177V10, binary
                 cls
clus                0   1
  P2RX7 MUTATED     0   4
  P2RX7 WILD-TYPE  14 154
[1] "tbl2"
                 cls
clus              [,1] [,2]
  P2RX7 MUTATED      0    4
  P2RX7 WILD-TYPE   14  154
     clus
vv    P2RX7 MUTATED P2RX7 WILD-TYPE
  NO              0              14
  YES             4             154
D177V11, continuous
D177V12, continuous
[1] "Remove cluster labels:" "P2RX7 MUTATED"         
clus
  P2RX7 MUTATED P2RX7 WILD-TYPE 
              2              66 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4405      TCGA-05-4410 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4424      TCGA-05-4427 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-05-4433      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-05-5428      TCGA-35-4122      TCGA-35-4123      TCGA-35-5375 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-38-4625      TCGA-38-4626      TCGA-44-2655      TCGA-44-2656 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2662      TCGA-44-2666 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5645      TCGA-44-6144      TCGA-44-6145 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-44-6147      TCGA-44-6148      TCGA-44-6774      TCGA-44-6775 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-44-6776      TCGA-44-6777      TCGA-44-6778      TCGA-44-6779 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-49-4486      TCGA-49-4494      TCGA-49-4505      TCGA-55-1592 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1595      TCGA-55-1596      TCGA-55-5899 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-55-6642      TCGA-55-6712      TCGA-64-1677      TCGA-64-1678 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-73-4659      TCGA-73-4662 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-73-4666      TCGA-73-4668      TCGA-73-4670      TCGA-73-4675 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-73-4676      TCGA-91-6829 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
                 vv
clus               R0  R1  R2  RX
  P2RX7 MUTATED     2   0   0   0
  P2RX7 WILD-TYPE 113   6   4   9
D177V13, multiclass
[1] "Remove cluster labels:" "P2RX7 MUTATED"         
clus
  P2RX7 MUTATED P2RX7 WILD-TYPE 
              2             132 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-05-4382 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-05-4384      TCGA-05-4389      TCGA-05-4390      TCGA-05-4395 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-05-4397      TCGA-05-4398      TCGA-05-4402      TCGA-05-4403 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-05-4405      TCGA-05-4410      TCGA-05-4415      TCGA-05-4417 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-05-4418      TCGA-05-4420      TCGA-05-4422      TCGA-05-4424 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-05-4425      TCGA-05-4426      TCGA-05-4427      TCGA-05-4432 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-05-4433      TCGA-05-4434      TCGA-05-5420      TCGA-05-5423 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-05-5425      TCGA-05-5428      TCGA-05-5429      TCGA-05-5715 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-35-3615      TCGA-35-4122      TCGA-35-4123      TCGA-35-5375 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-38-4625      TCGA-38-4626      TCGA-38-4627      TCGA-38-4628 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-38-4629      TCGA-38-4630      TCGA-38-4631      TCGA-38-4632 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-38-6178      TCGA-44-2655      TCGA-44-2657      TCGA-44-2659 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-6144      TCGA-44-6148 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-44-6775      TCGA-49-4486      TCGA-49-4487      TCGA-49-4488 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-49-4494      TCGA-49-4501      TCGA-49-4505      TCGA-49-4506 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-49-4507      TCGA-49-4510      TCGA-49-4512      TCGA-49-4514 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-49-6742      TCGA-49-6744      TCGA-49-6767      TCGA-50-5051 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-50-5055      TCGA-50-5066      TCGA-50-5931      TCGA-50-5942 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-6593      TCGA-50-6597      TCGA-55-1592 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1596      TCGA-55-5899      TCGA-55-6642 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-3770      TCGA-67-3771 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-67-3773      TCGA-67-3774      TCGA-67-4679      TCGA-67-6215 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-73-4659      TCGA-73-4662      TCGA-73-4666      TCGA-73-4668 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-73-4677 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-75-5122      TCGA-75-5125      TCGA-75-5126      TCGA-75-5146 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-75-5147      TCGA-75-6203      TCGA-75-6205      TCGA-75-6206 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-75-6207      TCGA-75-6211      TCGA-75-6212      TCGA-80-5611 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 
     TCGA-86-6562      TCGA-91-6828      TCGA-91-6829      TCGA-91-6835 
"P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" "P2RX7 WILD-TYPE" 

Clustering(178) Variable = NETO1 MUTATION ANALYSIS
D178V1, survival
                 sevent
clus2              0  1
  NETO1 MUTATED    8  5
  NETO1 WILD-TYPE 91 51
  NETO1 MUTATED NETO1 WILD-TYPE 
             13             142 
  NETO1 MUTATED NETO1 WILD-TYPE 
              5              51 
$`NETO1 MUTATED`
TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-44-2655 TCGA-44-3918 
       37.02         9.96        24.03        47.05        21.93        23.51 
TCGA-44-6145 TCGA-49-6744 TCGA-50-5045 TCGA-50-5068 TCGA-50-5931 TCGA-64-5781 
       10.78        29.26        71.47        49.28         8.78        51.25 
TCGA-91-6831 
       10.16 

$`NETO1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4402 
       50.07         3.98        19.92        14.01        45.01         8.02 
TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
       19.00        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
       12.00        30.02        21.99        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02        15.02         4.96        28.96 
TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
       22.03         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        97.74       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2656 TCGA-44-2657 
       35.28        11.64        44.61        14.73        46.98        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       44.94        24.36        42.08        42.77         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
       37.15        38.24         6.21        23.74        13.71        12.59 
TCGA-44-6144 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
       13.38         9.93        27.78        11.90         5.42        12.16 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46         5.16        55.89        15.02        12.13 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       17.13        20.48        70.55        14.96        25.81        31.04 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        8.05         9.27        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12        18.64        29.00        25.12        22.55        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 
       87.98         2.04        42.90        28.41        28.44         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       20.02        18.84        14.04        12.66         5.69         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        26.27 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 
       15.35         4.27         1.32         5.39         1.25        12.36 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6835 TCGA-91-6836 
       10.62        41.33         2.60        13.71 

  NETO1 MUTATED NETO1 WILD-TYPE 
           8.78            0.07 
  NETO1 MUTATED NETO1 WILD-TYPE 
          71.47          120.79 
  NETO1 MUTATED NETO1 WILD-TYPE 
         24.030          20.035 
[1] "8.8 - 71.5 (24.0)"  "0.1 - 120.8 (20.0)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"NETO1 WILD-TYPE"   "NETO1 MUTATED"   "NETO1 MUTATED"   "NETO1 MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "NETO1 MUTATED" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
  "NETO1 MUTATED" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE"   "NETO1 MUTATED" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"NETO1 WILD-TYPE"   "NETO1 MUTATED" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"NETO1 WILD-TYPE"   "NETO1 MUTATED" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
  "NETO1 MUTATED" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"NETO1 WILD-TYPE"   "NETO1 MUTATED" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
  "NETO1 MUTATED" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"NETO1 WILD-TYPE"   "NETO1 MUTATED" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
  "NETO1 MUTATED" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"NETO1 WILD-TYPE"   "NETO1 MUTATED"   "NETO1 MUTATED"   "NETO1 MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "NETO1 MUTATED" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
  "NETO1 MUTATED" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE"   "NETO1 MUTATED" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"NETO1 WILD-TYPE"   "NETO1 MUTATED" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"NETO1 WILD-TYPE"   "NETO1 MUTATED" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
  "NETO1 MUTATED" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"NETO1 WILD-TYPE"   "NETO1 MUTATED" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
  "NETO1 MUTATED" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"NETO1 WILD-TYPE"   "NETO1 MUTATED" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
  "NETO1 MUTATED" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"NETO1 WILD-TYPE"   "NETO1 MUTATED"   "NETO1 MUTATED"   "NETO1 MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "NETO1 MUTATED" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
  "NETO1 MUTATED" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE"   "NETO1 MUTATED" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"NETO1 WILD-TYPE"   "NETO1 MUTATED" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"NETO1 WILD-TYPE"   "NETO1 MUTATED" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
  "NETO1 MUTATED" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"NETO1 WILD-TYPE"   "NETO1 MUTATED" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
  "NETO1 MUTATED" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"NETO1 WILD-TYPE"   "NETO1 MUTATED" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
  "NETO1 MUTATED" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
[1] "hr=" "1.2"
D178V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  NETO1 MUTATED          4        5         1         2          0          2
  NETO1 WILD-TYPE       33       48        10        21         33          4
                 vv
clus              STAGE IV
  NETO1 MUTATED          0
  NETO1 WILD-TYPE        9
D178V3, multiclass
                 vv
clus               T1  T2  T3  T4
  NETO1 MUTATED     3   9   0   2
  NETO1 WILD-TYPE  38 100  14   6
D178V4, multiclass
    clus
vv   NETO1 MUTATED NETO1 WILD-TYPE
  T1             3              38
  T2             9             100
  T3             0              14
  T4             2               6
                 vv
clus              N0 N1 N2+N3
  NETO1 MUTATED    8  5     1
  NETO1 WILD-TYPE 87 32    34
D178V5, multiclass
       clus
vv      NETO1 MUTATED NETO1 WILD-TYPE
  N0                8              87
  N1                5              32
  N2+N3             1              34
                 vv
clus               M0  M1  MX
  NETO1 MUTATED    11   0   3
  NETO1 WILD-TYPE 132   9  15
D178V6, multiclass
    clus
vv   NETO1 MUTATED NETO1 WILD-TYPE
  M0            11             132
  M1             0               9
  MX             3              15
D178V7, binary
                 cls
clus               0  1
  NETO1 MUTATED   10  4
  NETO1 WILD-TYPE 83 75
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NETO1 MUTATED     10    4
  NETO1 WILD-TYPE   83   75
        clus
vv       NETO1 MUTATED NETO1 WILD-TYPE
  FEMALE            10              83
  MALE               4              75
D178V8, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  NETO1 MUTATED                            0                                 6
  NETO1 WILD-TYPE                          2                                33
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  NETO1 MUTATED                                                    8
  NETO1 WILD-TYPE                                                107
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  NETO1 MUTATED                                            0
  NETO1 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  NETO1 MUTATED                                               0
  NETO1 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  NETO1 MUTATED                                0
  NETO1 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  NETO1 MUTATED                                    0
  NETO1 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  NETO1 MUTATED                              0                             0
  NETO1 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  NETO1 MUTATED                                               0
  NETO1 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  NETO1 MUTATED                              0
  NETO1 WILD-TYPE                            2
D178V9, multiclass
D178V10, binary
                 cls
clus                0   1
  NETO1 MUTATED     1  13
  NETO1 WILD-TYPE  13 145
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NETO1 MUTATED      1   13
  NETO1 WILD-TYPE   13  145
     clus
vv    NETO1 MUTATED NETO1 WILD-TYPE
  NO              1              13
  YES            13             145
D178V11, continuous
D178V12, continuous
                 vv
clus               R0  R1  R2  RX
  NETO1 MUTATED    10   0   0   0
  NETO1 WILD-TYPE 105   6   4   9
D178V13, multiclass
    clus
vv   NETO1 MUTATED NETO1 WILD-TYPE
  R0            10             105
  R1             0               6
  R2             0               4
  RX             0               9

Clustering(179) Variable = MGAT4C MUTATION ANALYSIS
D179V1, survival
                  sevent
clus2               0  1
  MGAT4C MUTATED    2  4
  MGAT4C WILD-TYPE 97 52
  MGAT4C MUTATED MGAT4C WILD-TYPE 
               6              149 
  MGAT4C MUTATED MGAT4C WILD-TYPE 
               4               52 
$`MGAT4C MUTATED`
TCGA-05-4250 TCGA-44-6776 TCGA-50-5942 TCGA-50-6590 TCGA-55-1592 TCGA-64-1677 
        3.98        63.72        29.00        42.31        23.05        20.65 

$`MGAT4C WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 
       50.07        19.92        14.01        45.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 
       15.02         4.96        28.96        22.03         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        97.74       120.79 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       14.73        21.93        46.98        13.15        44.94        24.36 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       42.08        42.77         3.19         8.09        37.15        38.24 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
       23.51         6.21        23.74        13.71        12.59        13.38 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
       10.78         9.93        27.78        11.90         5.42        12.16 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46         5.16        55.89        15.02        12.13        29.26 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
       17.13        20.48        71.47        70.55        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       31.04        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5944 
       77.88        21.47         8.45        15.12        18.64        25.12 
TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       22.55         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       33.37        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
       32.61         0.79        56.81        39.09        37.02        87.98 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        2.04        42.90        28.41        51.25        28.44         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       20.02        18.84        14.04        12.66         5.69         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        26.27 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 
       15.35         4.27         1.32         5.39         1.25        12.36 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       10.62        41.33        10.16         2.60        13.71 

  MGAT4C MUTATED MGAT4C WILD-TYPE 
            3.98             0.07 
  MGAT4C MUTATED MGAT4C WILD-TYPE 
           63.72           120.79 
  MGAT4C MUTATED MGAT4C WILD-TYPE 
          26.025           20.050 
[1] "4.0 - 63.7 (26.0)"  "0.1 - 120.8 (20.1)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"MGAT4C WILD-TYPE"   "MGAT4C MUTATED" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE"   "MGAT4C MUTATED" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE"   "MGAT4C MUTATED" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE"   "MGAT4C MUTATED" "MGAT4C WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"MGAT4C WILD-TYPE"   "MGAT4C MUTATED" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE"   "MGAT4C MUTATED" "MGAT4C WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"MGAT4C WILD-TYPE"   "MGAT4C MUTATED" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE"   "MGAT4C MUTATED" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE"   "MGAT4C MUTATED" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE"   "MGAT4C MUTATED" "MGAT4C WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"MGAT4C WILD-TYPE"   "MGAT4C MUTATED" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE"   "MGAT4C MUTATED" "MGAT4C WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"MGAT4C WILD-TYPE"   "MGAT4C MUTATED" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE"   "MGAT4C MUTATED" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE"   "MGAT4C MUTATED" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE"   "MGAT4C MUTATED" "MGAT4C WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"MGAT4C WILD-TYPE"   "MGAT4C MUTATED" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE"   "MGAT4C MUTATED" "MGAT4C WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
[1] "hr=" "1.6"
D179V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  MGAT4C MUTATED          3        1         0         0          3          0
  MGAT4C WILD-TYPE       34       52        11        23         30          6
                  vv
clus               STAGE IV
  MGAT4C MUTATED          0
  MGAT4C WILD-TYPE        9
D179V3, multiclass
                  vv
clus                T1  T2  T3  T4
  MGAT4C MUTATED     2   4   1   0
  MGAT4C WILD-TYPE  39 105  13   8
D179V4, multiclass
    clus
vv   MGAT4C MUTATED MGAT4C WILD-TYPE
  T1              2               39
  T2              4              105
  T3              1               13
  T4              0                8
                  vv
clus               N0 N1 N2+N3
  MGAT4C MUTATED    4  1     2
  MGAT4C WILD-TYPE 91 36    33
D179V5, multiclass
       clus
vv      MGAT4C MUTATED MGAT4C WILD-TYPE
  N0                 4               91
  N1                 1               36
  N2+N3              2               33
                  vv
clus                M0  M1  MX
  MGAT4C MUTATED     6   0   1
  MGAT4C WILD-TYPE 137   9  17
D179V6, multiclass
    clus
vv   MGAT4C MUTATED MGAT4C WILD-TYPE
  M0              6              137
  M1              0                9
  MX              1               17
D179V7, binary
                  cls
clus                0  1
  MGAT4C MUTATED    5  2
  MGAT4C WILD-TYPE 88 77
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MGAT4C MUTATED      5    2
  MGAT4C WILD-TYPE   88   77
        clus
vv       MGAT4C MUTATED MGAT4C WILD-TYPE
  FEMALE              5               88
  MALE                2               77
D179V8, continuous
[1] "Remove cluster labels:" "MGAT4C MUTATED"        
clus
  MGAT4C MUTATED MGAT4C WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-5778 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" "MGAT4C WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  MGAT4C MUTATED                            0                                 0
  MGAT4C WILD-TYPE                          2                                39
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  MGAT4C MUTATED                                                    7
  MGAT4C WILD-TYPE                                                108
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  MGAT4C MUTATED                                            0
  MGAT4C WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  MGAT4C MUTATED                                               0
  MGAT4C WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  MGAT4C MUTATED                                0
  MGAT4C WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  MGAT4C MUTATED                                    0
  MGAT4C WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  MGAT4C MUTATED                              0                             0
  MGAT4C WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  MGAT4C MUTATED                                               0
  MGAT4C WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  MGAT4C MUTATED                              0
  MGAT4C WILD-TYPE                            2
D179V9, multiclass
D179V10, binary
                  cls
clus                 0   1
  MGAT4C MUTATED     1   6
  MGAT4C WILD-TYPE  13 152
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MGAT4C MUTATED      1    6
  MGAT4C WILD-TYPE   13  152
     clus
vv    MGAT4C MUTATED MGAT4C WILD-TYPE
  NO               1               13
  YES              6              152
D179V11, continuous
D179V12, continuous
                  vv
clus                R0  R1  R2  RX
  MGAT4C MUTATED     4   0   1   0
  MGAT4C WILD-TYPE 111   6   3   9
D179V13, multiclass
    clus
vv   MGAT4C MUTATED MGAT4C WILD-TYPE
  R0              4              111
  R1              0                6
  R2              1                3
  RX              0                9

Clustering(180) Variable = SLC34A2 MUTATION ANALYSIS
D180V1, survival
                   sevent
clus2                0  1
  SLC34A2 MUTATED    1  4
  SLC34A2 WILD-TYPE 98 52
  SLC34A2 MUTATED SLC34A2 WILD-TYPE 
                5               150 
  SLC34A2 MUTATED SLC34A2 WILD-TYPE 
                4                52 
$`SLC34A2 MUTATED`
TCGA-05-4396 TCGA-05-4403 TCGA-38-4631 TCGA-49-4505 TCGA-55-1592 
        9.96        19.00        11.64        14.07        23.05 

$`SLC34A2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        4.96        28.96        22.03         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       49.02        28.37        35.28        44.61        14.73        21.93 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       46.98        13.15        44.94        24.36        42.08        42.77 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        37.15        38.24        23.51         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
       23.74        13.71        12.59        13.38        10.78         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
       27.78        11.90         5.42        12.16        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       35.54        46.72        32.84         8.81        29.46         5.16 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       55.89        15.02        12.13        29.26        17.13        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        70.55        14.96        25.81        31.04        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12        18.64        29.00        25.12        22.55 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       33.37        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       87.98         2.04        42.90        28.41        51.25        28.44 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99        20.02        18.84        14.04        12.66         5.69 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        4.60        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       26.27        15.35         4.27         1.32         5.39         1.25 
TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       12.36        10.62        41.33        10.16         2.60        13.71 

  SLC34A2 MUTATED SLC34A2 WILD-TYPE 
             9.96              0.07 
  SLC34A2 MUTATED SLC34A2 WILD-TYPE 
            23.05            120.79 
  SLC34A2 MUTATED SLC34A2 WILD-TYPE 
            14.07             21.70 
[1] "10.0 - 23.1 (14.1)" "0.1 - 120.8 (21.7)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE"   "SLC34A2 MUTATED" "SLC34A2 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE"   "SLC34A2 MUTATED" "SLC34A2 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"SLC34A2 WILD-TYPE"   "SLC34A2 MUTATED" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"SLC34A2 WILD-TYPE"   "SLC34A2 MUTATED" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"SLC34A2 WILD-TYPE"   "SLC34A2 MUTATED" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE"   "SLC34A2 MUTATED" "SLC34A2 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE"   "SLC34A2 MUTATED" "SLC34A2 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"SLC34A2 WILD-TYPE"   "SLC34A2 MUTATED" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"SLC34A2 WILD-TYPE"   "SLC34A2 MUTATED" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"SLC34A2 WILD-TYPE"   "SLC34A2 MUTATED" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE"   "SLC34A2 MUTATED" "SLC34A2 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE"   "SLC34A2 MUTATED" "SLC34A2 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"SLC34A2 WILD-TYPE"   "SLC34A2 MUTATED" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"SLC34A2 WILD-TYPE"   "SLC34A2 MUTATED" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"SLC34A2 WILD-TYPE"   "SLC34A2 MUTATED" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
[1] "hr=" "4.4"
D180V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  SLC34A2 MUTATED          1        3         0         1          2          1
  SLC34A2 WILD-TYPE       36       50        11        22         31          5
                   vv
clus                STAGE IV
  SLC34A2 MUTATED          0
  SLC34A2 WILD-TYPE        9
D180V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  SLC34A2 MUTATED     0   6   1   1
  SLC34A2 WILD-TYPE  41 103  13   7
D180V4, multiclass
    clus
vv   SLC34A2 MUTATED SLC34A2 WILD-TYPE
  T1               0                41
  T2               6               103
  T3               1                13
  T4               1                 7
                   vv
clus                N0 N1 N2+N3
  SLC34A2 MUTATED    4  2     2
  SLC34A2 WILD-TYPE 91 35    33
D180V5, multiclass
       clus
vv      SLC34A2 MUTATED SLC34A2 WILD-TYPE
  N0                  4                91
  N1                  2                35
  N2+N3               2                33
                   vv
clus                 M0  M1  MX
  SLC34A2 MUTATED     8   0   0
  SLC34A2 WILD-TYPE 135   9  18
D180V6, multiclass
    clus
vv   SLC34A2 MUTATED SLC34A2 WILD-TYPE
  M0               8               135
  M1               0                 9
  MX               0                18
D180V7, binary
                   cls
clus                 0  1
  SLC34A2 MUTATED    4  4
  SLC34A2 WILD-TYPE 89 75
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC34A2 MUTATED      4    4
  SLC34A2 WILD-TYPE   89   75
        clus
vv       SLC34A2 MUTATED SLC34A2 WILD-TYPE
  FEMALE               4                89
  MALE                 4                75
D180V8, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  SLC34A2 MUTATED                            0
  SLC34A2 WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  SLC34A2 MUTATED                                   2
  SLC34A2 WILD-TYPE                                37
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SLC34A2 MUTATED                                                    5
  SLC34A2 WILD-TYPE                                                110
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  SLC34A2 MUTATED                                            0
  SLC34A2 WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  SLC34A2 MUTATED                                               0
  SLC34A2 WILD-TYPE                                             2
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  SLC34A2 MUTATED                                0
  SLC34A2 WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  SLC34A2 MUTATED                                    0
  SLC34A2 WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  SLC34A2 MUTATED                              0                             1
  SLC34A2 WILD-TYPE                            2                             3
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  SLC34A2 MUTATED                                               0
  SLC34A2 WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  SLC34A2 MUTATED                              0
  SLC34A2 WILD-TYPE                            2
D180V9, multiclass
D180V10, binary
                   cls
clus                  0   1
  SLC34A2 MUTATED     0   8
  SLC34A2 WILD-TYPE  14 150
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC34A2 MUTATED      0    8
  SLC34A2 WILD-TYPE   14  150
     clus
vv    SLC34A2 MUTATED SLC34A2 WILD-TYPE
  NO                0                14
  YES               8               150
D180V11, continuous
D180V12, continuous
                   vv
clus                 R0  R1  R2  RX
  SLC34A2 MUTATED     7   0   1   0
  SLC34A2 WILD-TYPE 108   6   3   9
D180V13, multiclass
    clus
vv   SLC34A2 MUTATED SLC34A2 WILD-TYPE
  R0               7               108
  R1               0                 6
  R2               1                 3
  RX               0                 9

Clustering(181) Variable = NTRK1 MUTATION ANALYSIS
D181V1, survival
                 sevent
clus2              0  1
  NTRK1 MUTATED    4  3
  NTRK1 WILD-TYPE 95 53
  NTRK1 MUTATED NTRK1 WILD-TYPE 
              7             148 
  NTRK1 MUTATED NTRK1 WILD-TYPE 
              3              53 
$`NTRK1 MUTATED`
TCGA-05-4396 TCGA-05-4398 TCGA-05-4424 TCGA-49-4494 TCGA-49-6743 TCGA-67-3770 
        9.96        47.05        30.02        35.54        12.13         0.99 
TCGA-73-4659 
       23.38 

$`NTRK1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
        8.98        29.95        12.00        21.99        26.01        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02        15.02         4.96 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
       28.96        22.03         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        97.74       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61        14.73        21.93 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       46.98        13.15        44.94        24.36        42.08        42.77 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        37.15        38.24        23.51         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
       23.74        13.71        12.59        13.38        10.78         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
       27.78        11.90         5.42        12.16        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46         5.16 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       55.89        15.02        29.26        17.13        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       70.55        14.96        25.81        31.04        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12        18.64        29.00        25.12        22.55        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       87.98         2.04        42.90        28.41        51.25        28.44 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       20.02        18.84        14.04        12.66         5.69         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
       13.87         2.01        52.57        29.95        26.27        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 
        4.27         1.32         5.39         1.25        12.36        10.62 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33        10.16         2.60        13.71 

  NTRK1 MUTATED NTRK1 WILD-TYPE 
           0.99            0.07 
  NTRK1 MUTATED NTRK1 WILD-TYPE 
          47.05          120.79 
  NTRK1 MUTATED NTRK1 WILD-TYPE 
         23.380          20.565 
[1] "1.0 - 47.0 (23.4)"  "0.1 - 120.8 (20.6)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE"   "NTRK1 MUTATED" "NTRK1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "NTRK1 MUTATED" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"NTRK1 WILD-TYPE"   "NTRK1 MUTATED" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE"   "NTRK1 MUTATED" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
  "NTRK1 MUTATED" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE"   "NTRK1 MUTATED" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"NTRK1 WILD-TYPE"   "NTRK1 MUTATED" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE"   "NTRK1 MUTATED" "NTRK1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "NTRK1 MUTATED" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"NTRK1 WILD-TYPE"   "NTRK1 MUTATED" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE"   "NTRK1 MUTATED" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
  "NTRK1 MUTATED" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE"   "NTRK1 MUTATED" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"NTRK1 WILD-TYPE"   "NTRK1 MUTATED" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE"   "NTRK1 MUTATED" "NTRK1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
  "NTRK1 MUTATED" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"NTRK1 WILD-TYPE"   "NTRK1 MUTATED" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE"   "NTRK1 MUTATED" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
  "NTRK1 MUTATED" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE"   "NTRK1 MUTATED" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"NTRK1 WILD-TYPE"   "NTRK1 MUTATED" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
[1] "hr=" "1.3"
D181V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  NTRK1 MUTATED          1        0         0         1          3          2
  NTRK1 WILD-TYPE       36       53        11        22         30          4
                 vv
clus              STAGE IV
  NTRK1 MUTATED          0
  NTRK1 WILD-TYPE        9
D181V3, multiclass
                 vv
clus               T1  T2  T3  T4
  NTRK1 MUTATED     2   1   2   2
  NTRK1 WILD-TYPE  39 108  12   6
D181V4, multiclass
    clus
vv   NTRK1 MUTATED NTRK1 WILD-TYPE
  T1             2              39
  T2             1             108
  T3             2              12
  T4             2               6
                 vv
clus              N0 N1 N2+N3
  NTRK1 MUTATED    2  1     4
  NTRK1 WILD-TYPE 93 36    31
D181V5, multiclass
       clus
vv      NTRK1 MUTATED NTRK1 WILD-TYPE
  N0                2              93
  N1                1              36
  N2+N3             4              31
                 vv
clus               M0  M1  MX
  NTRK1 MUTATED     6   0   1
  NTRK1 WILD-TYPE 137   9  17
D181V6, multiclass
    clus
vv   NTRK1 MUTATED NTRK1 WILD-TYPE
  M0             6             137
  M1             0               9
  MX             1              17
D181V7, binary
                 cls
clus               0  1
  NTRK1 MUTATED    3  4
  NTRK1 WILD-TYPE 90 75
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NTRK1 MUTATED      3    4
  NTRK1 WILD-TYPE   90   75
        clus
vv       NTRK1 MUTATED NTRK1 WILD-TYPE
  FEMALE             3              90
  MALE               4              75
D181V8, continuous
[1] "Remove cluster labels:" "NTRK1 MUTATED"         
clus
  NTRK1 MUTATED NTRK1 WILD-TYPE 
              1              11 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-1677 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-64-5778      TCGA-71-6725      TCGA-73-4662      TCGA-73-4666 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4676      TCGA-75-5122 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  NTRK1 MUTATED                            0                                 3
  NTRK1 WILD-TYPE                          2                                36
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  NTRK1 MUTATED                                                    3
  NTRK1 WILD-TYPE                                                112
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  NTRK1 MUTATED                                            0
  NTRK1 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  NTRK1 MUTATED                                               0
  NTRK1 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  NTRK1 MUTATED                                1
  NTRK1 WILD-TYPE                              1
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  NTRK1 MUTATED                                    0
  NTRK1 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  NTRK1 MUTATED                              0                             0
  NTRK1 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  NTRK1 MUTATED                                               0
  NTRK1 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  NTRK1 MUTATED                              0
  NTRK1 WILD-TYPE                            2
D181V9, multiclass
D181V10, binary
                 cls
clus                0   1
  NTRK1 MUTATED     0   7
  NTRK1 WILD-TYPE  14 151
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NTRK1 MUTATED      0    7
  NTRK1 WILD-TYPE   14  151
     clus
vv    NTRK1 MUTATED NTRK1 WILD-TYPE
  NO              0              14
  YES             7             151
D181V11, continuous
D181V12, continuous
                 vv
clus               R0  R1  R2  RX
  NTRK1 MUTATED     5   1   0   0
  NTRK1 WILD-TYPE 110   5   4   9
D181V13, multiclass
    clus
vv   NTRK1 MUTATED NTRK1 WILD-TYPE
  R0             5             110
  R1             1               5
  R2             0               4
  RX             0               9

Clustering(182) Variable = VEGFC MUTATION ANALYSIS
D182V1, survival
                 sevent
clus2              0  1
  VEGFC MUTATED    5  4
  VEGFC WILD-TYPE 94 52
  VEGFC MUTATED VEGFC WILD-TYPE 
              9             146 
  VEGFC MUTATED VEGFC WILD-TYPE 
              4              52 
$`VEGFC MUTATED`
TCGA-05-4250 TCGA-05-4382 TCGA-49-4488 TCGA-49-4494 TCGA-50-6590 TCGA-64-1676 
        3.98        19.92        28.57        35.54        42.31        56.81 
TCGA-64-5781 TCGA-64-5815 TCGA-67-6215 
       51.25        28.44         5.69 

$`VEGFC WILD-TYPE`
TCGA-05-4249 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       50.07        14.01        45.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        4.96        28.96        22.03         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61        14.73 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       21.93        46.98        13.15        44.94        24.36        42.08 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       42.77         3.19         8.09        37.15        38.24        23.51 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21        23.74        13.71        12.59        13.38        10.78 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93        27.78        11.90         5.42        12.16        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 
       32.45        36.49        16.41        76.21        28.11        12.66 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46         5.16 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       55.89        15.02        12.13        29.26        17.13        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        70.55        14.96        25.81        31.04        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12        18.64        29.00        25.12        22.55 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
       32.61         0.79        20.65        39.09        37.02        87.98 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
        2.04        42.90        28.41         0.99        20.02        18.84 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
       14.04        12.66         4.60        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        26.27        15.35         4.27         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        5.39         1.25        12.36        10.62        41.33        10.16 
TCGA-91-6835 TCGA-91-6836 
        2.60        13.71 

  VEGFC MUTATED VEGFC WILD-TYPE 
           3.98            0.07 
  VEGFC MUTATED VEGFC WILD-TYPE 
          56.81          120.79 
  VEGFC MUTATED VEGFC WILD-TYPE 
         28.570          20.265 
[1] "4.0 - 56.8 (28.6)"  "0.1 - 120.8 (20.3)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"VEGFC WILD-TYPE"   "VEGFC MUTATED"   "VEGFC MUTATED" "VEGFC WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"VEGFC WILD-TYPE"   "VEGFC MUTATED" "VEGFC WILD-TYPE"   "VEGFC MUTATED" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE"   "VEGFC MUTATED" "VEGFC WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"VEGFC WILD-TYPE"   "VEGFC MUTATED" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"VEGFC WILD-TYPE"   "VEGFC MUTATED"   "VEGFC MUTATED" "VEGFC WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
  "VEGFC MUTATED" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"VEGFC WILD-TYPE"   "VEGFC MUTATED"   "VEGFC MUTATED" "VEGFC WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"VEGFC WILD-TYPE"   "VEGFC MUTATED" "VEGFC WILD-TYPE"   "VEGFC MUTATED" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE"   "VEGFC MUTATED" "VEGFC WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"VEGFC WILD-TYPE"   "VEGFC MUTATED" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"VEGFC WILD-TYPE"   "VEGFC MUTATED"   "VEGFC MUTATED" "VEGFC WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
  "VEGFC MUTATED" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"VEGFC WILD-TYPE"   "VEGFC MUTATED"   "VEGFC MUTATED" "VEGFC WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"VEGFC WILD-TYPE"   "VEGFC MUTATED" "VEGFC WILD-TYPE"   "VEGFC MUTATED" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE"   "VEGFC MUTATED" "VEGFC WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"VEGFC WILD-TYPE"   "VEGFC MUTATED" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"VEGFC WILD-TYPE"   "VEGFC MUTATED"   "VEGFC MUTATED" "VEGFC WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
  "VEGFC MUTATED" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
[1] "hr=" "1.1"
D182V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  VEGFC MUTATED          2        4         0         1          2          0
  VEGFC WILD-TYPE       35       49        11        22         31          6
                 vv
clus              STAGE IV
  VEGFC MUTATED          0
  VEGFC WILD-TYPE        9
D182V3, multiclass
                 vv
clus               T1  T2  T3  T4
  VEGFC MUTATED     2   5   2   0
  VEGFC WILD-TYPE  39 104  12   8
D182V4, multiclass
    clus
vv   VEGFC MUTATED VEGFC WILD-TYPE
  T1             2              39
  T2             5             104
  T3             2              12
  T4             0               8
                 vv
clus              N0 N1 N2+N3
  VEGFC MUTATED    6  2     1
  VEGFC WILD-TYPE 89 35    34
D182V5, multiclass
       clus
vv      VEGFC MUTATED VEGFC WILD-TYPE
  N0                6              89
  N1                2              35
  N2+N3             1              34
                 vv
clus               M0  M1  MX
  VEGFC MUTATED     8   0   1
  VEGFC WILD-TYPE 135   9  17
D182V6, multiclass
    clus
vv   VEGFC MUTATED VEGFC WILD-TYPE
  M0             8             135
  M1             0               9
  MX             1              17
D182V7, binary
                 cls
clus               0  1
  VEGFC MUTATED    5  4
  VEGFC WILD-TYPE 88 75
[1] "tbl2"
                 cls
clus              [,1] [,2]
  VEGFC MUTATED      5    4
  VEGFC WILD-TYPE   88   75
        clus
vv       VEGFC MUTATED VEGFC WILD-TYPE
  FEMALE             5              88
  MALE               4              75
D182V8, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  VEGFC MUTATED                            0                                 3
  VEGFC WILD-TYPE                          2                                36
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  VEGFC MUTATED                                                    6
  VEGFC WILD-TYPE                                                109
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  VEGFC MUTATED                                            0
  VEGFC WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  VEGFC MUTATED                                               0
  VEGFC WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  VEGFC MUTATED                                0
  VEGFC WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  VEGFC MUTATED                                    0
  VEGFC WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  VEGFC MUTATED                              0                             0
  VEGFC WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  VEGFC MUTATED                                               0
  VEGFC WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  VEGFC MUTATED                              0
  VEGFC WILD-TYPE                            2
D182V9, multiclass
D182V10, binary
                 cls
clus                0   1
  VEGFC MUTATED     0   9
  VEGFC WILD-TYPE  14 149
[1] "tbl2"
                 cls
clus              [,1] [,2]
  VEGFC MUTATED      0    9
  VEGFC WILD-TYPE   14  149
     clus
vv    VEGFC MUTATED VEGFC WILD-TYPE
  NO              0              14
  YES             9             149
D182V11, continuous
D182V12, continuous
[1] "Remove cluster labels:" "VEGFC MUTATED"         
clus
  VEGFC MUTATED VEGFC WILD-TYPE 
              2              66 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4396      TCGA-05-4405 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-05-4410      TCGA-05-4415      TCGA-05-4417      TCGA-05-4424 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4433      TCGA-05-5420      TCGA-05-5423 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-05-5425      TCGA-05-5428      TCGA-35-4122      TCGA-35-4123 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-35-5375      TCGA-38-4625      TCGA-38-4626      TCGA-44-2655 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2657      TCGA-44-2659      TCGA-44-2662 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3396      TCGA-44-3398 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-44-3918      TCGA-44-4112      TCGA-44-5645      TCGA-44-6144 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6147      TCGA-44-6148      TCGA-44-6774 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-44-6775      TCGA-44-6776      TCGA-44-6777      TCGA-44-6778 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-44-6779      TCGA-49-4486      TCGA-49-4505      TCGA-55-1592 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1595      TCGA-55-1596      TCGA-55-5899 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-55-6642      TCGA-55-6712      TCGA-64-1677      TCGA-64-1678 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-64-5779      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-91-6829      TCGA-91-6836 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
                 vv
clus               R0  R1  R2  RX
  VEGFC MUTATED     7   0   1   0
  VEGFC WILD-TYPE 108   6   3   9
D182V13, multiclass
    clus
vv   VEGFC MUTATED VEGFC WILD-TYPE
  R0             7             108
  R1             0               6
  R2             1               3
  RX             0               9

Clustering(183) Variable = GC MUTATION ANALYSIS
D183V1, survival
              sevent
clus2           0  1
  GC MUTATED    2  3
  GC WILD-TYPE 97 53
  GC MUTATED GC WILD-TYPE 
           5          150 
  GC MUTATED GC WILD-TYPE 
           3           53 
$`GC MUTATED`
TCGA-05-4249 TCGA-05-4396 TCGA-05-4397 TCGA-44-2668 TCGA-64-5779 
       50.07         9.96        24.03         8.09        28.41 

$`GC WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4398 
        3.98        19.92        14.01        45.01        37.02        47.05 
TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
        8.02        19.00        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
       29.95        12.00        30.02        21.99        26.01        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02        15.02         4.96 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
       28.96        22.03         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        97.74       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61        14.73        21.93 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       46.98        13.15        44.94        24.36        42.08        42.77 
TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        3.19        37.15        38.24        23.51         6.21        23.74 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       13.71        12.59        13.38        10.78         9.93        27.78 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
       11.90         5.42        12.16        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46         5.16 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       55.89        15.02        12.13        29.26        17.13        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        70.55        14.96        25.81        31.04        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12        18.64        29.00        25.12        22.55 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 
       37.02        87.98         2.04        42.90        51.25        28.44 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99        20.02        18.84        14.04        12.66         5.69 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        4.60        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       26.27        15.35         4.27         1.32         5.39         1.25 
TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       12.36        10.62        41.33        10.16         2.60        13.71 

  GC MUTATED GC WILD-TYPE 
        8.09         0.07 
  GC MUTATED GC WILD-TYPE 
       50.07       120.79 
  GC MUTATED GC WILD-TYPE 
      24.030       20.565 
[1] "8.1 - 50.1 (24.0)"  "0.1 - 120.8 (20.6)"
  TCGA-05-4249   TCGA-05-4250   TCGA-05-4382   TCGA-05-4384   TCGA-05-4389 
  "GC MUTATED" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-4390   TCGA-05-4396   TCGA-05-4397   TCGA-05-4398   TCGA-05-4402 
"GC WILD-TYPE"   "GC MUTATED"   "GC MUTATED" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-4403   TCGA-05-4405   TCGA-05-4415   TCGA-05-4417   TCGA-05-4418 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-4420   TCGA-05-4422   TCGA-05-4424   TCGA-05-4425   TCGA-05-4426 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-4427   TCGA-05-4430   TCGA-05-4432   TCGA-05-4433   TCGA-05-4434 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-5420   TCGA-05-5423   TCGA-05-5425   TCGA-05-5428   TCGA-05-5429 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-5715   TCGA-35-3615   TCGA-35-4122   TCGA-35-4123   TCGA-35-5375 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-38-4625   TCGA-38-4626   TCGA-38-4627   TCGA-38-4628   TCGA-38-4629 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-38-4630   TCGA-38-4631   TCGA-38-4632   TCGA-38-6178   TCGA-44-2655 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-2656   TCGA-44-2657   TCGA-44-2659   TCGA-44-2661   TCGA-44-2662 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-2665   TCGA-44-2666   TCGA-44-2668   TCGA-44-3396   TCGA-44-3398 
"GC WILD-TYPE" "GC WILD-TYPE"   "GC MUTATED" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-3918   TCGA-44-3919   TCGA-44-4112   TCGA-44-5643   TCGA-44-5645 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-6144   TCGA-44-6145   TCGA-44-6146   TCGA-44-6147   TCGA-44-6148 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-6774   TCGA-44-6775   TCGA-44-6776   TCGA-44-6777   TCGA-44-6778 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-6779   TCGA-49-4486   TCGA-49-4487   TCGA-49-4488   TCGA-49-4490 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-49-4494   TCGA-49-4501   TCGA-49-4505   TCGA-49-4506   TCGA-49-4507 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-49-4510   TCGA-49-4512   TCGA-49-4514   TCGA-49-6742   TCGA-49-6743 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-49-6744   TCGA-49-6745   TCGA-50-5044   TCGA-50-5045   TCGA-50-5049 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-5051   TCGA-50-5055   TCGA-50-5066   TCGA-50-5068   TCGA-50-5072 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-5930   TCGA-50-5931   TCGA-50-5932   TCGA-50-5933   TCGA-50-5935 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-5936   TCGA-50-5939   TCGA-50-5941   TCGA-50-5942   TCGA-50-5944 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-5946   TCGA-50-6590   TCGA-50-6591   TCGA-50-6592   TCGA-50-6593 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-6594   TCGA-50-6595   TCGA-50-6597   TCGA-55-1592   TCGA-55-1594 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-55-1595   TCGA-55-1596   TCGA-55-5899   TCGA-55-6543   TCGA-55-6642 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-55-6712   TCGA-64-1676   TCGA-64-1677   TCGA-64-1678   TCGA-64-1680 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-64-5774   TCGA-64-5775   TCGA-64-5778   TCGA-64-5779   TCGA-64-5781 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE"   "GC MUTATED" "GC WILD-TYPE" 
  TCGA-64-5815   TCGA-67-3770   TCGA-67-3771   TCGA-67-3772   TCGA-67-3773 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-67-3774   TCGA-67-6215   TCGA-67-6216   TCGA-67-6217   TCGA-71-6725 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-73-4658   TCGA-73-4659   TCGA-73-4662   TCGA-73-4666   TCGA-73-4668 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-73-4670   TCGA-73-4675   TCGA-73-4676   TCGA-73-4677   TCGA-86-6562 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-91-6828   TCGA-91-6829   TCGA-91-6831   TCGA-91-6835   TCGA-91-6836 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-4249   TCGA-05-4250   TCGA-05-4382   TCGA-05-4384   TCGA-05-4389 
  "GC MUTATED" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-4390   TCGA-05-4396   TCGA-05-4397   TCGA-05-4398   TCGA-05-4402 
"GC WILD-TYPE"   "GC MUTATED"   "GC MUTATED" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-4403   TCGA-05-4405   TCGA-05-4415   TCGA-05-4417   TCGA-05-4418 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-4420   TCGA-05-4422   TCGA-05-4424   TCGA-05-4425   TCGA-05-4426 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-4427   TCGA-05-4430   TCGA-05-4432   TCGA-05-4433   TCGA-05-4434 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-5420   TCGA-05-5423   TCGA-05-5425   TCGA-05-5428   TCGA-05-5429 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-5715   TCGA-35-3615   TCGA-35-4122   TCGA-35-4123   TCGA-35-5375 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-38-4625   TCGA-38-4626   TCGA-38-4627   TCGA-38-4628   TCGA-38-4629 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-38-4630   TCGA-38-4631   TCGA-38-4632   TCGA-38-6178   TCGA-44-2655 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-2656   TCGA-44-2657   TCGA-44-2659   TCGA-44-2661   TCGA-44-2662 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-2665   TCGA-44-2666   TCGA-44-2668   TCGA-44-3396   TCGA-44-3398 
"GC WILD-TYPE" "GC WILD-TYPE"   "GC MUTATED" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-3918   TCGA-44-3919   TCGA-44-4112   TCGA-44-5643   TCGA-44-5645 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-6144   TCGA-44-6145   TCGA-44-6146   TCGA-44-6147   TCGA-44-6148 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-6774   TCGA-44-6775   TCGA-44-6776   TCGA-44-6777   TCGA-44-6778 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-6779   TCGA-49-4486   TCGA-49-4487   TCGA-49-4488   TCGA-49-4490 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-49-4494   TCGA-49-4501   TCGA-49-4505   TCGA-49-4506   TCGA-49-4507 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-49-4510   TCGA-49-4512   TCGA-49-4514   TCGA-49-6742   TCGA-49-6743 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-49-6744   TCGA-49-6745   TCGA-50-5044   TCGA-50-5045   TCGA-50-5049 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-5051   TCGA-50-5055   TCGA-50-5066   TCGA-50-5068   TCGA-50-5072 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-5930   TCGA-50-5931   TCGA-50-5932   TCGA-50-5933   TCGA-50-5935 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-5936   TCGA-50-5939   TCGA-50-5941   TCGA-50-5942   TCGA-50-5944 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-5946   TCGA-50-6590   TCGA-50-6591   TCGA-50-6592   TCGA-50-6593 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-6594   TCGA-50-6595   TCGA-50-6597   TCGA-55-1592   TCGA-55-1594 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-55-1595   TCGA-55-1596   TCGA-55-5899   TCGA-55-6543   TCGA-55-6642 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-55-6712   TCGA-64-1676   TCGA-64-1677   TCGA-64-1678   TCGA-64-1680 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-64-5774   TCGA-64-5775   TCGA-64-5778   TCGA-64-5779   TCGA-64-5781 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE"   "GC MUTATED" "GC WILD-TYPE" 
  TCGA-64-5815   TCGA-67-3770   TCGA-67-3771   TCGA-67-3772   TCGA-67-3773 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-67-3774   TCGA-67-6215   TCGA-67-6216   TCGA-67-6217   TCGA-71-6725 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-73-4658   TCGA-73-4659   TCGA-73-4662   TCGA-73-4666   TCGA-73-4668 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-73-4670   TCGA-73-4675   TCGA-73-4676   TCGA-73-4677   TCGA-86-6562 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-91-6828   TCGA-91-6829   TCGA-91-6831   TCGA-91-6835   TCGA-91-6836 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-4249   TCGA-05-4250   TCGA-05-4382   TCGA-05-4384   TCGA-05-4389 
  "GC MUTATED" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-4390   TCGA-05-4396   TCGA-05-4397   TCGA-05-4398   TCGA-05-4402 
"GC WILD-TYPE"   "GC MUTATED"   "GC MUTATED" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-4403   TCGA-05-4405   TCGA-05-4415   TCGA-05-4417   TCGA-05-4418 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-4420   TCGA-05-4422   TCGA-05-4424   TCGA-05-4425   TCGA-05-4426 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-4427   TCGA-05-4430   TCGA-05-4432   TCGA-05-4433   TCGA-05-4434 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-5420   TCGA-05-5423   TCGA-05-5425   TCGA-05-5428   TCGA-05-5429 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-5715   TCGA-35-3615   TCGA-35-4122   TCGA-35-4123   TCGA-35-5375 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-38-4625   TCGA-38-4626   TCGA-38-4627   TCGA-38-4628   TCGA-38-4629 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-38-4630   TCGA-38-4631   TCGA-38-4632   TCGA-38-6178   TCGA-44-2655 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-2656   TCGA-44-2657   TCGA-44-2659   TCGA-44-2661   TCGA-44-2662 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-2665   TCGA-44-2666   TCGA-44-2668   TCGA-44-3396   TCGA-44-3398 
"GC WILD-TYPE" "GC WILD-TYPE"   "GC MUTATED" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-3918   TCGA-44-3919   TCGA-44-4112   TCGA-44-5643   TCGA-44-5645 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-6144   TCGA-44-6145   TCGA-44-6146   TCGA-44-6147   TCGA-44-6148 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-6774   TCGA-44-6775   TCGA-44-6776   TCGA-44-6777   TCGA-44-6778 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-6779   TCGA-49-4486   TCGA-49-4487   TCGA-49-4488   TCGA-49-4490 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-49-4494   TCGA-49-4501   TCGA-49-4505   TCGA-49-4506   TCGA-49-4507 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-49-4510   TCGA-49-4512   TCGA-49-4514   TCGA-49-6742   TCGA-49-6743 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-49-6744   TCGA-49-6745   TCGA-50-5044   TCGA-50-5045   TCGA-50-5049 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-5051   TCGA-50-5055   TCGA-50-5066   TCGA-50-5068   TCGA-50-5072 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-5930   TCGA-50-5931   TCGA-50-5932   TCGA-50-5933   TCGA-50-5935 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-5936   TCGA-50-5939   TCGA-50-5941   TCGA-50-5942   TCGA-50-5944 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-5946   TCGA-50-6590   TCGA-50-6591   TCGA-50-6592   TCGA-50-6593 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-6594   TCGA-50-6595   TCGA-50-6597   TCGA-55-1592   TCGA-55-1594 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-55-1595   TCGA-55-1596   TCGA-55-5899   TCGA-55-6543   TCGA-55-6642 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-55-6712   TCGA-64-1676   TCGA-64-1677   TCGA-64-1678   TCGA-64-1680 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-64-5774   TCGA-64-5775   TCGA-64-5778   TCGA-64-5779   TCGA-64-5781 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE"   "GC MUTATED" "GC WILD-TYPE" 
  TCGA-64-5815   TCGA-67-3770   TCGA-67-3771   TCGA-67-3772   TCGA-67-3773 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-67-3774   TCGA-67-6215   TCGA-67-6216   TCGA-67-6217   TCGA-71-6725 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-73-4658   TCGA-73-4659   TCGA-73-4662   TCGA-73-4666   TCGA-73-4668 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-73-4670   TCGA-73-4675   TCGA-73-4676   TCGA-73-4677   TCGA-86-6562 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-91-6828   TCGA-91-6829   TCGA-91-6831   TCGA-91-6835   TCGA-91-6836 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
[1] "hr=" "1.7"
D183V2, continuous
              vv
clus           STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  GC MUTATED          0        2         0         1          1          1
  GC WILD-TYPE       37       51        11        22         32          5
              vv
clus           STAGE IV
  GC MUTATED          0
  GC WILD-TYPE        9
D183V3, multiclass
              vv
clus            T1  T2  T3  T4
  GC MUTATED     0   4   0   1
  GC WILD-TYPE  41 105  14   7
D183V4, multiclass
    clus
vv   GC MUTATED GC WILD-TYPE
  T1          0           41
  T2          4          105
  T3          0           14
  T4          1            7
              vv
clus           N0 N1 N2+N3
  GC MUTATED    2  2     1
  GC WILD-TYPE 93 35    34
D183V5, multiclass
       clus
vv      GC MUTATED GC WILD-TYPE
  N0             2           93
  N1             2           35
  N2+N3          1           34
              vv
clus            M0  M1  MX
  GC MUTATED     5   0   0
  GC WILD-TYPE 138   9  18
D183V6, multiclass
    clus
vv   GC MUTATED GC WILD-TYPE
  M0          5          138
  M1          0            9
  MX          0           18
D183V7, binary
              cls
clus            0  1
  GC MUTATED    0  5
  GC WILD-TYPE 93 74
[1] "tbl2"
              cls
clus           [,1] [,2]
  GC MUTATED      0    5
  GC WILD-TYPE   93   74
        clus
vv       GC MUTATED GC WILD-TYPE
  FEMALE          0           93
  MALE            5           74
D183V8, continuous
              vv
clus           LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  GC MUTATED                            1                                 2
  GC WILD-TYPE                          1                                37
              vv
clus           LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  GC MUTATED                                                    2
  GC WILD-TYPE                                                113
              vv
clus           LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  GC MUTATED                                            0
  GC WILD-TYPE                                          1
              vv
clus           LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  GC MUTATED                                               0
  GC WILD-TYPE                                             2
              vv
clus           LUNG CLEAR CELL ADENOCARCINOMA
  GC MUTATED                                0
  GC WILD-TYPE                              2
              vv
clus           LUNG MICROPAPILLARY ADENOCARCINOMA LUNG MUCINOUS ADENOCARCINOMA
  GC MUTATED                                    0                            0
  GC WILD-TYPE                                  2                            2
              vv
clus           LUNG PAPILLARY ADENOCARCINOMA
  GC MUTATED                               0
  GC WILD-TYPE                             4
              vv
clus           LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  GC MUTATED                                               0
  GC WILD-TYPE                                             1
              vv
clus           MUCINOUS (COLLOID) CARCINOMA
  GC MUTATED                              0
  GC WILD-TYPE                            2
D183V9, multiclass
D183V10, binary
              cls
clus             0   1
  GC MUTATED     1   4
  GC WILD-TYPE  13 154
[1] "tbl2"
              cls
clus           [,1] [,2]
  GC MUTATED      1    4
  GC WILD-TYPE   13  154
     clus
vv    GC MUTATED GC WILD-TYPE
  NO           1           13
  YES          4          154
D183V11, continuous
D183V12, continuous
              vv
clus            R0  R1  R2  RX
  GC MUTATED     5   0   0   0
  GC WILD-TYPE 110   6   4   9
D183V13, multiclass
    clus
vv   GC MUTATED GC WILD-TYPE
  R0          5          110
  R1          0            6
  R2          0            4
  RX          0            9

Clustering(184) Variable = CTCFL MUTATION ANALYSIS
D184V1, survival
                 sevent
clus2              0  1
  CTCFL MUTATED    6  4
  CTCFL WILD-TYPE 93 52
  CTCFL MUTATED CTCFL WILD-TYPE 
             10             145 
  CTCFL MUTATED CTCFL WILD-TYPE 
              4              52 
$`CTCFL MUTATED`
TCGA-05-4390 TCGA-05-4396 TCGA-38-4625 TCGA-38-4631 TCGA-44-6777 TCGA-49-4514 
       37.02         9.96        97.74        11.64        32.45        55.89 
TCGA-50-5049 TCGA-64-1676 TCGA-64-5775 TCGA-67-3770 
       70.55        56.81         2.04         0.99 

$`CTCFL WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4397 
       50.07         3.98        19.92        14.01        45.01        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        4.96        28.96        22.03         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        7.36         5.95         8.68       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       28.37        35.28        44.61        14.73        21.93        46.98 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        44.94        24.36        42.08        42.77         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        37.15        38.24        23.51         6.21        23.74 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       13.71        12.59        13.38        10.78         9.93        27.78 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 
       11.90         5.42        12.16        63.72        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-6742 
       14.07        32.84         8.81        29.46         5.16        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 
       12.13        29.26        17.13        20.48        71.47        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81        31.04        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12        18.64 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
       29.00        25.12        22.55        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 
       20.65        39.09        37.02        87.98        42.90        28.41 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       51.25        28.44        20.02        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        5.69         4.60        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        26.27        15.35         4.27         1.32         5.39 
TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.25        12.36        10.62        41.33        10.16         2.60 
TCGA-91-6836 
       13.71 

  CTCFL MUTATED CTCFL WILD-TYPE 
           0.99            0.07 
  CTCFL MUTATED CTCFL WILD-TYPE 
          97.74          120.79 
  CTCFL MUTATED CTCFL WILD-TYPE 
         34.735          20.480 
[1] "1.0 - 97.7 (34.7)"  "0.1 - 120.8 (20.5)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"CTCFL WILD-TYPE"   "CTCFL MUTATED"   "CTCFL MUTATED" "CTCFL WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE"   "CTCFL MUTATED" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"CTCFL WILD-TYPE"   "CTCFL MUTATED" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
  "CTCFL MUTATED" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE"   "CTCFL MUTATED" "CTCFL WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"CTCFL WILD-TYPE"   "CTCFL MUTATED" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"CTCFL WILD-TYPE"   "CTCFL MUTATED" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE"   "CTCFL MUTATED" "CTCFL WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE"   "CTCFL MUTATED" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"CTCFL WILD-TYPE"   "CTCFL MUTATED"   "CTCFL MUTATED" "CTCFL WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE"   "CTCFL MUTATED" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"CTCFL WILD-TYPE"   "CTCFL MUTATED" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
  "CTCFL MUTATED" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE"   "CTCFL MUTATED" "CTCFL WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"CTCFL WILD-TYPE"   "CTCFL MUTATED" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"CTCFL WILD-TYPE"   "CTCFL MUTATED" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE"   "CTCFL MUTATED" "CTCFL WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE"   "CTCFL MUTATED" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"CTCFL WILD-TYPE"   "CTCFL MUTATED"   "CTCFL MUTATED" "CTCFL WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE"   "CTCFL MUTATED" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"CTCFL WILD-TYPE"   "CTCFL MUTATED" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
  "CTCFL MUTATED" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE"   "CTCFL MUTATED" "CTCFL WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"CTCFL WILD-TYPE"   "CTCFL MUTATED" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"CTCFL WILD-TYPE"   "CTCFL MUTATED" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE"   "CTCFL MUTATED" "CTCFL WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE"   "CTCFL MUTATED" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
[1] "hr=" "1.5"
D184V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  CTCFL MUTATED          4        4         0         1          1          1
  CTCFL WILD-TYPE       33       49        11        22         32          5
                 vv
clus              STAGE IV
  CTCFL MUTATED          0
  CTCFL WILD-TYPE        9
D184V3, multiclass
                 vv
clus               T1  T2  T3  T4
  CTCFL MUTATED     3   6   0   2
  CTCFL WILD-TYPE  38 103  14   6
D184V4, multiclass
    clus
vv   CTCFL MUTATED CTCFL WILD-TYPE
  T1             3              38
  T2             6             103
  T3             0              14
  T4             2               6
                 vv
clus              N0 N1 N2+N3
  CTCFL MUTATED    8  2     0
  CTCFL WILD-TYPE 87 35    35
D184V5, multiclass
       clus
vv      CTCFL MUTATED CTCFL WILD-TYPE
  N0                8              87
  N1                2              35
  N2+N3             0              35
                 vv
clus               M0  M1  MX
  CTCFL MUTATED    10   0   1
  CTCFL WILD-TYPE 133   9  17
D184V6, multiclass
    clus
vv   CTCFL MUTATED CTCFL WILD-TYPE
  M0            10             133
  M1             0               9
  MX             1              17
D184V7, binary
                 cls
clus               0  1
  CTCFL MUTATED    6  5
  CTCFL WILD-TYPE 87 74
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CTCFL MUTATED      6    5
  CTCFL WILD-TYPE   87   74
        clus
vv       CTCFL MUTATED CTCFL WILD-TYPE
  FEMALE             6              87
  MALE               5              74
D184V8, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  CTCFL MUTATED                            0                                 2
  CTCFL WILD-TYPE                          2                                37
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CTCFL MUTATED                                                    8
  CTCFL WILD-TYPE                                                107
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  CTCFL MUTATED                                            0
  CTCFL WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  CTCFL MUTATED                                               0
  CTCFL WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  CTCFL MUTATED                                0
  CTCFL WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  CTCFL MUTATED                                    0
  CTCFL WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  CTCFL MUTATED                              0                             1
  CTCFL WILD-TYPE                            2                             3
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  CTCFL MUTATED                                               0
  CTCFL WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  CTCFL MUTATED                              0
  CTCFL WILD-TYPE                            2
D184V9, multiclass
D184V10, binary
                 cls
clus                0   1
  CTCFL MUTATED     2   9
  CTCFL WILD-TYPE  12 149
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CTCFL MUTATED      2    9
  CTCFL WILD-TYPE   12  149
     clus
vv    CTCFL MUTATED CTCFL WILD-TYPE
  NO              2              12
  YES             9             149
D184V11, continuous
D184V12, continuous
                 vv
clus               R0  R1  R2  RX
  CTCFL MUTATED     9   0   0   0
  CTCFL WILD-TYPE 106   6   4   9
D184V13, multiclass
    clus
vv   CTCFL MUTATED CTCFL WILD-TYPE
  R0             9             106
  R1             0               6
  R2             0               4
  RX             0               9

Clustering(185) Variable = DYTN MUTATION ANALYSIS
D185V1, survival
                sevent
clus2             0  1
  DYTN MUTATED    6  3
  DYTN WILD-TYPE 93 53
  DYTN MUTATED DYTN WILD-TYPE 
             9            146 
  DYTN MUTATED DYTN WILD-TYPE 
             3             53 
$`DYTN MUTATED`
TCGA-05-4390 TCGA-05-4417 TCGA-38-4626 TCGA-44-2666 TCGA-44-6779 TCGA-55-1592 
       37.02        14.93       120.79         3.19        16.41        23.05 
TCGA-64-1676 TCGA-64-5781 TCGA-91-6831 
       56.81        51.25        10.16 

$`DYTN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4396 
       50.07         3.98        19.92        14.01        45.01         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        4.96        28.96        22.03         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 
        7.36         5.95         8.68        97.74        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 
       28.37        35.28        11.64        44.61        14.73        21.93 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       46.98        13.15        44.94        24.36        42.08        42.77 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        37.15        38.24        23.51         6.21        23.74 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       13.71        12.59        13.38        10.78         9.93        27.78 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
       11.90         5.42        12.16        63.72        32.45        36.49 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46         5.16        55.89 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        29.26        17.13        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       70.55        14.96        25.81        31.04        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12        18.64        29.00        25.12        22.55        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
        0.79        20.65        39.09        37.02        87.98         2.04 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       42.90        28.41        28.44         0.99        20.02        18.84 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
       14.04        12.66         5.69         4.60        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        26.27        15.35         4.27 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 
        1.32         5.39         1.25        12.36        10.62        41.33 
TCGA-91-6835 TCGA-91-6836 
        2.60        13.71 

  DYTN MUTATED DYTN WILD-TYPE 
          3.19           0.07 
  DYTN MUTATED DYTN WILD-TYPE 
        120.79          97.74 
  DYTN MUTATED DYTN WILD-TYPE 
        23.050         20.565 
[1] "3.2 - 120.8 (23.1)" "0.1 - 97.7 (20.6)" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"DYTN WILD-TYPE"   "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"DYTN WILD-TYPE"   "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
  "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE"   "DYTN MUTATED" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"DYTN WILD-TYPE" "DYTN WILD-TYPE"   "DYTN MUTATED" "DYTN WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"DYTN WILD-TYPE"   "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"DYTN WILD-TYPE"   "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"DYTN WILD-TYPE"   "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
  "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"DYTN WILD-TYPE"   "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"DYTN WILD-TYPE"   "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
  "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE"   "DYTN MUTATED" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"DYTN WILD-TYPE" "DYTN WILD-TYPE"   "DYTN MUTATED" "DYTN WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"DYTN WILD-TYPE"   "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"DYTN WILD-TYPE"   "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"DYTN WILD-TYPE"   "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
  "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4249     TCGA-05-4250     TCGA-05-4382     TCGA-05-4384 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4389     TCGA-05-4390     TCGA-05-4396     TCGA-05-4397 
"DYTN WILD-TYPE"   "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4398     TCGA-05-4402     TCGA-05-4403     TCGA-05-4405 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4415     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"DYTN WILD-TYPE"   "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4424     TCGA-05-4425     TCGA-05-4426 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4430     TCGA-05-4432     TCGA-05-4433 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-05-5428     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-38-4626     TCGA-38-4627     TCGA-38-4628     TCGA-38-4629 
  "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-38-4630     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-2655     TCGA-44-2656     TCGA-44-2657     TCGA-44-2659 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-2661     TCGA-44-2662     TCGA-44-2665     TCGA-44-2666 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE"   "DYTN MUTATED" 
    TCGA-44-2668     TCGA-44-3396     TCGA-44-3398     TCGA-44-3918 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4486 
"DYTN WILD-TYPE" "DYTN WILD-TYPE"   "DYTN MUTATED" "DYTN WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4494 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-49-4501     TCGA-49-4505     TCGA-49-4506     TCGA-49-4507 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-49-4510     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"DYTN WILD-TYPE"   "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-55-6712     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"DYTN WILD-TYPE"   "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-64-1680     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-3770 
"DYTN WILD-TYPE"   "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-67-3771     TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-67-6215     TCGA-67-6216     TCGA-67-6217     TCGA-71-6725 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-73-4658     TCGA-73-4659     TCGA-73-4662     TCGA-73-4666 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-73-4668     TCGA-73-4670     TCGA-73-4675     TCGA-73-4676 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-73-4677     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
  "DYTN MUTATED" "DYTN WILD-TYPE" "DYTN WILD-TYPE" 
[1] "hr=" "1.7"
D185V2, continuous
                vv
clus             STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  DYTN MUTATED          2        6         1         1          0          0
  DYTN WILD-TYPE       35       47        10        22         33          6
                vv
clus             STAGE IV
  DYTN MUTATED          0
  DYTN WILD-TYPE        9
D185V3, multiclass
                vv
clus              T1  T2  T3  T4
  DYTN MUTATED     1   9   0   0
  DYTN WILD-TYPE  40 100  14   8
D185V4, multiclass
    clus
vv   DYTN MUTATED DYTN WILD-TYPE
  T1            1             40
  T2            9            100
  T3            0             14
  T4            0              8
                vv
clus             N0 N1 N2+N3
  DYTN MUTATED    9  1     0
  DYTN WILD-TYPE 86 36    35
D185V5, multiclass
       clus
vv      DYTN MUTATED DYTN WILD-TYPE
  N0               9             86
  N1               1             36
  N2+N3            0             35
                vv
clus              M0  M1  MX
  DYTN MUTATED     8   0   2
  DYTN WILD-TYPE 135   9  16
D185V6, multiclass
    clus
vv   DYTN MUTATED DYTN WILD-TYPE
  M0            8            135
  M1            0              9
  MX            2             16
D185V7, binary
                cls
clus              0  1
  DYTN MUTATED    5  5
  DYTN WILD-TYPE 88 74
[1] "tbl2"
                cls
clus             [,1] [,2]
  DYTN MUTATED      5    5
  DYTN WILD-TYPE   88   74
        clus
vv       DYTN MUTATED DYTN WILD-TYPE
  FEMALE            5             88
  MALE              5             74
D185V8, continuous
                vv
clus             LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  DYTN MUTATED                            0                                 3
  DYTN WILD-TYPE                          2                                36
                vv
clus             LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  DYTN MUTATED                                                    6
  DYTN WILD-TYPE                                                109
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  DYTN MUTATED                                            0
  DYTN WILD-TYPE                                          1
                vv
clus             LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  DYTN MUTATED                                               0
  DYTN WILD-TYPE                                             2
                vv
clus             LUNG CLEAR CELL ADENOCARCINOMA
  DYTN MUTATED                                0
  DYTN WILD-TYPE                              2
                vv
clus             LUNG MICROPAPILLARY ADENOCARCINOMA
  DYTN MUTATED                                    0
  DYTN WILD-TYPE                                  2
                vv
clus             LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  DYTN MUTATED                              0                             0
  DYTN WILD-TYPE                            2                             4
                vv
clus             LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  DYTN MUTATED                                               1
  DYTN WILD-TYPE                                             0
                vv
clus             MUCINOUS (COLLOID) CARCINOMA
  DYTN MUTATED                              0
  DYTN WILD-TYPE                            2
D185V9, multiclass
D185V10, binary
                cls
clus               0   1
  DYTN MUTATED     0  10
  DYTN WILD-TYPE  14 148
[1] "tbl2"
                cls
clus             [,1] [,2]
  DYTN MUTATED      0   10
  DYTN WILD-TYPE   14  148
     clus
vv    DYTN MUTATED DYTN WILD-TYPE
  NO             0             14
  YES           10            148
D185V11, continuous
D185V12, continuous
                vv
clus              R0  R1  R2  RX
  DYTN MUTATED     8   0   0   0
  DYTN WILD-TYPE 107   6   4   9
D185V13, multiclass
    clus
vv   DYTN MUTATED DYTN WILD-TYPE
  R0            8            107
  R1            0              6
  R2            0              4
  RX            0              9

Clustering(186) Variable = EHHADH MUTATION ANALYSIS
D186V1, survival
                  sevent
clus2               0  1
  EHHADH MUTATED    3  1
  EHHADH WILD-TYPE 96 55
  EHHADH MUTATED EHHADH WILD-TYPE 
               4              151 
  EHHADH MUTATED EHHADH WILD-TYPE 
               1               55 
$`EHHADH MUTATED`
TCGA-05-4396 TCGA-35-4122 TCGA-50-5066 TCGA-50-5941 
        9.96         7.36        31.04        18.64 

$`EHHADH WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 
       15.02         4.96        28.96        22.03         0.99         2.04 
TCGA-35-3615 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        0.46         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61        14.73 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       21.93        46.98        13.15        44.94        24.36        42.08 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       42.77         3.19         8.09        37.15        38.24        23.51 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21        23.74        13.71        12.59        13.38        10.78 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93        27.78        11.90         5.42        12.16        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46         5.16        55.89        15.02        12.13        29.26 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
       17.13        20.48        71.47        70.55        14.96        25.81 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
       21.47         8.45        15.12        29.00        25.12        22.55 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        87.98         2.04        42.90        28.41        51.25 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       28.44         0.99        20.02        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        5.69         4.60        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        26.27        15.35         4.27         1.32         5.39 
TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.25        12.36        10.62        41.33        10.16         2.60 
TCGA-91-6836 
       13.71 

  EHHADH MUTATED EHHADH WILD-TYPE 
            7.36             0.07 
  EHHADH MUTATED EHHADH WILD-TYPE 
           31.04           120.79 
  EHHADH MUTATED EHHADH WILD-TYPE 
           14.30            21.47 
[1] "7.4 - 31.0 (14.3)"  "0.1 - 120.8 (21.5)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE"   "EHHADH MUTATED" "EHHADH WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
  "EHHADH MUTATED" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
  "EHHADH MUTATED" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE"   "EHHADH MUTATED" "EHHADH WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE"   "EHHADH MUTATED" "EHHADH WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
  "EHHADH MUTATED" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
  "EHHADH MUTATED" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE"   "EHHADH MUTATED" "EHHADH WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE"   "EHHADH MUTATED" "EHHADH WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
  "EHHADH MUTATED" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
  "EHHADH MUTATED" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE"   "EHHADH MUTATED" "EHHADH WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
[1] "hr=" "1.2"
D186V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  EHHADH MUTATED          1        1         0         0          1          1
  EHHADH WILD-TYPE       36       52        11        23         32          5
                  vv
clus               STAGE IV
  EHHADH MUTATED          0
  EHHADH WILD-TYPE        9
D186V3, multiclass
                  vv
clus                T1  T2  T3  T4
  EHHADH MUTATED     1   2   0   1
  EHHADH WILD-TYPE  40 107  14   7
D186V4, multiclass
    clus
vv   EHHADH MUTATED EHHADH WILD-TYPE
  T1              1               40
  T2              2              107
  T3              0               14
  T4              1                7
                  vv
clus               N0 N1 N2+N3
  EHHADH MUTATED    2  1     1
  EHHADH WILD-TYPE 93 36    34
D186V5, multiclass
       clus
vv      EHHADH MUTATED EHHADH WILD-TYPE
  N0                 2               93
  N1                 1               36
  N2+N3              1               34
                  vv
clus                M0  M1  MX
  EHHADH MUTATED     4   0   0
  EHHADH WILD-TYPE 139   9  18
D186V6, multiclass
    clus
vv   EHHADH MUTATED EHHADH WILD-TYPE
  M0              4              139
  M1              0                9
  MX              0               18
D186V7, binary
                  cls
clus                0  1
  EHHADH MUTATED    1  3
  EHHADH WILD-TYPE 92 76
[1] "tbl2"
                  cls
clus               [,1] [,2]
  EHHADH MUTATED      1    3
  EHHADH WILD-TYPE   92   76
        clus
vv       EHHADH MUTATED EHHADH WILD-TYPE
  FEMALE              1               92
  MALE                3               76
D186V8, continuous
[1] "Remove cluster labels:" "EHHADH MUTATED"        
clus
  EHHADH MUTATED EHHADH WILD-TYPE 
               1               11 
      TCGA-35-4123       TCGA-35-5375       TCGA-64-1677       TCGA-64-5778 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  EHHADH MUTATED                            0                                 2
  EHHADH WILD-TYPE                          2                                37
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  EHHADH MUTATED                                                    2
  EHHADH WILD-TYPE                                                113
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  EHHADH MUTATED                                            0
  EHHADH WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  EHHADH MUTATED                                               0
  EHHADH WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  EHHADH MUTATED                                0
  EHHADH WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  EHHADH MUTATED                                    0
  EHHADH WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  EHHADH MUTATED                              0                             0
  EHHADH WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  EHHADH MUTATED                                               0
  EHHADH WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  EHHADH MUTATED                              0
  EHHADH WILD-TYPE                            2
D186V9, multiclass
D186V10, binary
                  cls
clus                 0   1
  EHHADH MUTATED     0   4
  EHHADH WILD-TYPE  14 154
[1] "tbl2"
                  cls
clus               [,1] [,2]
  EHHADH MUTATED      0    4
  EHHADH WILD-TYPE   14  154
     clus
vv    EHHADH MUTATED EHHADH WILD-TYPE
  NO               0               14
  YES              4              154
D186V11, continuous
D186V12, continuous
[1] "Remove cluster labels:" "EHHADH MUTATED"        
clus
  EHHADH MUTATED EHHADH WILD-TYPE 
               2               66 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4405       TCGA-05-4410 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4424       TCGA-05-4427 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-05-4433       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-05-5428       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-38-4626       TCGA-44-2655       TCGA-44-2656       TCGA-44-2657 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-44-2659       TCGA-44-2662       TCGA-44-2666       TCGA-44-2668 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-4112 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-44-5645       TCGA-44-6144       TCGA-44-6145       TCGA-44-6147 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-49-4494       TCGA-49-4505       TCGA-55-1592       TCGA-55-1594 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-55-5899       TCGA-55-6642 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1677       TCGA-64-1678       TCGA-64-1680 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-64-5781       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-91-6829       TCGA-91-6836 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
                  vv
clus                R0  R1  R2  RX
  EHHADH MUTATED     3   0   0   0
  EHHADH WILD-TYPE 112   6   4   9
D186V13, multiclass
    clus
vv   EHHADH MUTATED EHHADH WILD-TYPE
  R0              3              112
  R1              0                6
  R2              0                4
  RX              0                9

Clustering(187) Variable = COL4A2 MUTATION ANALYSIS
D187V1, survival
                  sevent
clus2               0  1
  COL4A2 MUTATED    7  4
  COL4A2 WILD-TYPE 92 52
  COL4A2 MUTATED COL4A2 WILD-TYPE 
              11              144 
  COL4A2 MUTATED COL4A2 WILD-TYPE 
               4               52 
$`COL4A2 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-05-4433 TCGA-35-5375 TCGA-38-4625 TCGA-44-2656 
       19.92         9.96        24.00         8.68        97.74        46.98 
TCGA-44-2657 TCGA-44-3918 TCGA-44-4112 TCGA-50-5045 TCGA-73-4658 
       13.15        23.51        23.74        71.47        52.57 

$`COL4A2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4397 
       50.07         3.98        14.01        45.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       26.01        25.02        25.02        15.02        15.02         4.96 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
       28.96        22.03         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
        5.95       120.79        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2659 TCGA-44-2661 
       11.64        44.61        14.73        21.93        44.94        24.36 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       42.08        42.77         3.19         8.09        37.15        38.24 
TCGA-44-3919 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        6.21        13.71        12.59        13.38        10.78         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
       27.78        11.90         5.42        12.16        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
        5.16        55.89        15.02        12.13        29.26        17.13 
TCGA-50-5044 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       20.48        70.55        14.96        25.81        31.04        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12        18.64        29.00        25.12        22.55 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        87.98         2.04        42.90        28.41        51.25 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       28.44         0.99        20.02        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4659 TCGA-73-4662 
        5.69         4.60        13.87         2.01        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       26.27        15.35         4.27         1.32         5.39         1.25 
TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       12.36        10.62        41.33        10.16         2.60        13.71 

  COL4A2 MUTATED COL4A2 WILD-TYPE 
            8.68             0.07 
  COL4A2 MUTATED COL4A2 WILD-TYPE 
           97.74           120.79 
  COL4A2 MUTATED COL4A2 WILD-TYPE 
          23.740           20.265 
[1] "8.7 - 97.7 (23.7)"  "0.1 - 120.8 (20.3)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE"   "COL4A2 MUTATED" "COL4A2 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE"   "COL4A2 MUTATED" "COL4A2 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE"   "COL4A2 MUTATED" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE"   "COL4A2 MUTATED"   "COL4A2 MUTATED" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"COL4A2 WILD-TYPE"   "COL4A2 MUTATED"   "COL4A2 MUTATED" "COL4A2 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE"   "COL4A2 MUTATED" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"COL4A2 WILD-TYPE"   "COL4A2 MUTATED" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
  "COL4A2 MUTATED" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
  "COL4A2 MUTATED" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE"   "COL4A2 MUTATED" "COL4A2 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE"   "COL4A2 MUTATED" "COL4A2 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE"   "COL4A2 MUTATED" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE"   "COL4A2 MUTATED"   "COL4A2 MUTATED" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"COL4A2 WILD-TYPE"   "COL4A2 MUTATED"   "COL4A2 MUTATED" "COL4A2 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE"   "COL4A2 MUTATED" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"COL4A2 WILD-TYPE"   "COL4A2 MUTATED" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
  "COL4A2 MUTATED" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
  "COL4A2 MUTATED" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE"   "COL4A2 MUTATED" "COL4A2 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE"   "COL4A2 MUTATED" "COL4A2 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE"   "COL4A2 MUTATED" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE"   "COL4A2 MUTATED"   "COL4A2 MUTATED" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"COL4A2 WILD-TYPE"   "COL4A2 MUTATED"   "COL4A2 MUTATED" "COL4A2 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE"   "COL4A2 MUTATED" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"COL4A2 WILD-TYPE"   "COL4A2 MUTATED" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
  "COL4A2 MUTATED" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
  "COL4A2 MUTATED" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
[1] "hr=" "1.6"
D187V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  COL4A2 MUTATED          2        7         0         0          1          1
  COL4A2 WILD-TYPE       35       46        11        23         32          5
                  vv
clus               STAGE IV
  COL4A2 MUTATED          0
  COL4A2 WILD-TYPE        9
D187V3, multiclass
                  vv
clus                T1  T2  T3  T4
  COL4A2 MUTATED     1   9   0   1
  COL4A2 WILD-TYPE  40 100  14   7
D187V4, multiclass
    clus
vv   COL4A2 MUTATED COL4A2 WILD-TYPE
  T1              1               40
  T2              9              100
  T3              0               14
  T4              1                7
                  vv
clus               N0 N1 N2+N3
  COL4A2 MUTATED    7  2     1
  COL4A2 WILD-TYPE 88 35    34
D187V5, multiclass
       clus
vv      COL4A2 MUTATED COL4A2 WILD-TYPE
  N0                 7               88
  N1                 2               35
  N2+N3              1               34
                  vv
clus                M0  M1  MX
  COL4A2 MUTATED    11   0   0
  COL4A2 WILD-TYPE 132   9  18
D187V6, multiclass
    clus
vv   COL4A2 MUTATED COL4A2 WILD-TYPE
  M0             11              132
  M1              0                9
  MX              0               18
D187V7, binary
                  cls
clus                0  1
  COL4A2 MUTATED    6  5
  COL4A2 WILD-TYPE 87 74
[1] "tbl2"
                  cls
clus               [,1] [,2]
  COL4A2 MUTATED      6    5
  COL4A2 WILD-TYPE   87   74
        clus
vv       COL4A2 MUTATED COL4A2 WILD-TYPE
  FEMALE              6               87
  MALE                5               74
D187V8, continuous
[1] "Remove cluster labels:" "COL4A2 MUTATED"        
clus
  COL4A2 MUTATED COL4A2 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-64-1677       TCGA-64-5778 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4676       TCGA-75-5122 
"COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" "COL4A2 WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  COL4A2 MUTATED                            0                                 3
  COL4A2 WILD-TYPE                          2                                36
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  COL4A2 MUTATED                                                    8
  COL4A2 WILD-TYPE                                                107
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  COL4A2 MUTATED                                            0
  COL4A2 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  COL4A2 MUTATED                                               0
  COL4A2 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  COL4A2 MUTATED                                0
  COL4A2 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  COL4A2 MUTATED                                    0
  COL4A2 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  COL4A2 MUTATED                              0                             0
  COL4A2 WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  COL4A2 MUTATED                                               0
  COL4A2 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  COL4A2 MUTATED                              0
  COL4A2 WILD-TYPE                            2
D187V9, multiclass
D187V10, binary
                  cls
clus                 0   1
  COL4A2 MUTATED     1  10
  COL4A2 WILD-TYPE  13 148
[1] "tbl2"
                  cls
clus               [,1] [,2]
  COL4A2 MUTATED      1   10
  COL4A2 WILD-TYPE   13  148
     clus
vv    COL4A2 MUTATED COL4A2 WILD-TYPE
  NO               1               13
  YES             10              148
D187V11, continuous
D187V12, continuous
                  vv
clus                R0  R1  R2  RX
  COL4A2 MUTATED     9   0   0   0
  COL4A2 WILD-TYPE 106   6   4   9
D187V13, multiclass
    clus
vv   COL4A2 MUTATED COL4A2 WILD-TYPE
  R0              9              106
  R1              0                6
  R2              0                4
  RX              0                9

Clustering(188) Variable = ABCG5 MUTATION ANALYSIS
D188V1, survival
                 sevent
clus2              0  1
  ABCG5 MUTATED    2  5
  ABCG5 WILD-TYPE 97 51
  ABCG5 MUTATED ABCG5 WILD-TYPE 
              7             148 
  ABCG5 MUTATED ABCG5 WILD-TYPE 
              5              51 
$`ABCG5 MUTATED`
TCGA-05-4396 TCGA-05-4417 TCGA-05-4418 TCGA-38-4629 TCGA-49-4510 TCGA-49-6745 
        9.96        14.93         8.98        28.37        29.46        17.13 
TCGA-50-6594 
       12.16 

$`ABCG5 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
       29.95        12.00        30.02        21.99        26.01        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02        15.02         4.96 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
       28.96        22.03         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        97.74       120.79        37.71        49.02 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        44.61        14.73        21.93        46.98 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        44.94        24.36        42.08        42.77         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        37.15        38.24        23.51         6.21        23.74 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       13.71        12.59        13.38        10.78         9.93        27.78 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
       11.90         5.42        12.16        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4512 TCGA-49-4514 
       46.72        14.07        32.84         8.81         5.16        55.89 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       15.02        12.13        29.26        20.48        71.47        70.55 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81        31.04        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
       18.64        29.00        25.12        22.55        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       25.51        11.05         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        37.02        87.98         2.04 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       42.90        28.41        51.25        28.44         0.99        20.02 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
       18.84        14.04        12.66         5.69         4.60        13.87 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        26.27        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 
        4.27         1.32         5.39         1.25        12.36        10.62 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33        10.16         2.60        13.71 

  ABCG5 MUTATED ABCG5 WILD-TYPE 
           8.98            0.07 
  ABCG5 MUTATED ABCG5 WILD-TYPE 
          29.46          120.79 
  ABCG5 MUTATED ABCG5 WILD-TYPE 
          14.93           21.70 
[1] "9.0 - 29.5 (14.9)"  "0.1 - 120.8 (21.7)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE"   "ABCG5 MUTATED" "ABCG5 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"ABCG5 WILD-TYPE"   "ABCG5 MUTATED"   "ABCG5 MUTATED" "ABCG5 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE"   "ABCG5 MUTATED" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
  "ABCG5 MUTATED" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE"   "ABCG5 MUTATED" "ABCG5 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE"   "ABCG5 MUTATED" "ABCG5 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE"   "ABCG5 MUTATED" "ABCG5 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"ABCG5 WILD-TYPE"   "ABCG5 MUTATED"   "ABCG5 MUTATED" "ABCG5 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE"   "ABCG5 MUTATED" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
  "ABCG5 MUTATED" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE"   "ABCG5 MUTATED" "ABCG5 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE"   "ABCG5 MUTATED" "ABCG5 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE"   "ABCG5 MUTATED" "ABCG5 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"ABCG5 WILD-TYPE"   "ABCG5 MUTATED"   "ABCG5 MUTATED" "ABCG5 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE"   "ABCG5 MUTATED" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
  "ABCG5 MUTATED" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE"   "ABCG5 MUTATED" "ABCG5 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE"   "ABCG5 MUTATED" "ABCG5 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
[1] "hr=" "3.3"
D188V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  ABCG5 MUTATED          0        3         0         2          3          1
  ABCG5 WILD-TYPE       37       50        11        21         30          5
                 vv
clus              STAGE IV
  ABCG5 MUTATED          0
  ABCG5 WILD-TYPE        9
D188V3, multiclass
                 vv
clus               T1  T2  T3  T4
  ABCG5 MUTATED     0   4   4   1
  ABCG5 WILD-TYPE  41 105  10   7
D188V4, multiclass
    clus
vv   ABCG5 MUTATED ABCG5 WILD-TYPE
  T1             0              41
  T2             4             105
  T3             4              10
  T4             1               7
                 vv
clus              N0 N1 N2+N3
  ABCG5 MUTATED    4  2     3
  ABCG5 WILD-TYPE 91 35    32
D188V5, multiclass
       clus
vv      ABCG5 MUTATED ABCG5 WILD-TYPE
  N0                4              91
  N1                2              35
  N2+N3             3              32
                 vv
clus               M0  M1  MX
  ABCG5 MUTATED     9   0   0
  ABCG5 WILD-TYPE 134   9  18
D188V6, multiclass
    clus
vv   ABCG5 MUTATED ABCG5 WILD-TYPE
  M0             9             134
  M1             0               9
  MX             0              18
D188V7, binary
                 cls
clus               0  1
  ABCG5 MUTATED    4  5
  ABCG5 WILD-TYPE 89 74
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ABCG5 MUTATED      4    5
  ABCG5 WILD-TYPE   89   74
        clus
vv       ABCG5 MUTATED ABCG5 WILD-TYPE
  FEMALE             4              89
  MALE               5              74
D188V8, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  ABCG5 MUTATED                            0                                 3
  ABCG5 WILD-TYPE                          2                                36
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ABCG5 MUTATED                                                    6
  ABCG5 WILD-TYPE                                                109
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  ABCG5 MUTATED                                            0
  ABCG5 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  ABCG5 MUTATED                                               0
  ABCG5 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  ABCG5 MUTATED                                0
  ABCG5 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  ABCG5 MUTATED                                    0
  ABCG5 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  ABCG5 MUTATED                              0                             0
  ABCG5 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  ABCG5 MUTATED                                               0
  ABCG5 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  ABCG5 MUTATED                              0
  ABCG5 WILD-TYPE                            2
D188V9, multiclass
D188V10, binary
                 cls
clus                0   1
  ABCG5 MUTATED     0   9
  ABCG5 WILD-TYPE  14 149
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ABCG5 MUTATED      0    9
  ABCG5 WILD-TYPE   14  149
     clus
vv    ABCG5 MUTATED ABCG5 WILD-TYPE
  NO              0              14
  YES             9             149
D188V11, continuous
D188V12, continuous
[1] "Remove cluster labels:" "ABCG5 MUTATED"         
clus
  ABCG5 MUTATED ABCG5 WILD-TYPE 
              2              66 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4405      TCGA-05-4410 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4424      TCGA-05-4427      TCGA-05-4433 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-05-5420      TCGA-05-5423      TCGA-05-5425      TCGA-05-5428 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-38-4626      TCGA-44-2655      TCGA-44-2656      TCGA-44-2657 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2662      TCGA-44-2666      TCGA-44-2668 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-4112 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-44-5645      TCGA-44-6144      TCGA-44-6145      TCGA-44-6147 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-49-4494      TCGA-49-4505      TCGA-55-1592      TCGA-55-1594 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-55-5899      TCGA-55-6642 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-64-5781      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
     TCGA-91-6829      TCGA-91-6836 
"ABCG5 WILD-TYPE" "ABCG5 WILD-TYPE" 
                 vv
clus               R0  R1  R2  RX
  ABCG5 MUTATED     7   0   0   0
  ABCG5 WILD-TYPE 108   6   4   9
D188V13, multiclass
    clus
vv   ABCG5 MUTATED ABCG5 WILD-TYPE
  R0             7             108
  R1             0               6
  R2             0               4
  RX             0               9

Clustering(189) Variable = OR10G2 MUTATION ANALYSIS
D189V1, survival
                  sevent
clus2               0  1
  OR10G2 MUTATED    3  2
  OR10G2 WILD-TYPE 96 54
  OR10G2 MUTATED OR10G2 WILD-TYPE 
               5              150 
  OR10G2 MUTATED OR10G2 WILD-TYPE 
               2               54 
$`OR10G2 MUTATED`
TCGA-49-6743 TCGA-50-5049 TCGA-50-6593 TCGA-55-6642 TCGA-91-6829 
       12.13        70.55        11.05        32.61        41.33 

$`OR10G2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       21.99        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 
       15.02        15.02         4.96        28.96        22.03         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        97.74 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
      120.79        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61        14.73        21.93        46.98        13.15        44.94 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
       24.36        42.08        42.77         3.19         8.09        37.15 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
       38.24        23.51         6.21        23.74        13.71        12.59 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
       13.38        10.78         9.93        27.78        11.90         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
       12.16        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46         5.16        55.89        15.02 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 
       29.26        17.13        20.48        71.47        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       31.04        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12        18.64        29.00 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6594 
       25.12        22.55        42.31         3.88        25.51        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        6.21        33.37        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        2.86         0.07         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        87.98         2.04        42.90        28.41        51.25 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       28.44         0.99        20.02        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        5.69         4.60        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        26.27        15.35         4.27         1.32         5.39 
TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.25        12.36        10.62        10.16         2.60        13.71 

  OR10G2 MUTATED OR10G2 WILD-TYPE 
           11.05             0.07 
  OR10G2 MUTATED OR10G2 WILD-TYPE 
           70.55           120.79 
  OR10G2 MUTATED OR10G2 WILD-TYPE 
          32.610           20.565 
[1] "11.1 - 70.5 (32.6)" "0.1 - 120.8 (20.6)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
  "OR10G2 MUTATED" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"OR10G2 WILD-TYPE"   "OR10G2 MUTATED" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"OR10G2 WILD-TYPE"   "OR10G2 MUTATED" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE"   "OR10G2 MUTATED" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE"   "OR10G2 MUTATED" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
  "OR10G2 MUTATED" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"OR10G2 WILD-TYPE"   "OR10G2 MUTATED" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"OR10G2 WILD-TYPE"   "OR10G2 MUTATED" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE"   "OR10G2 MUTATED" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE"   "OR10G2 MUTATED" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
  "OR10G2 MUTATED" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"OR10G2 WILD-TYPE"   "OR10G2 MUTATED" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"OR10G2 WILD-TYPE"   "OR10G2 MUTATED" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE"   "OR10G2 MUTATED" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE"   "OR10G2 MUTATED" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
[1] "hr=" "1.2"
D189V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  OR10G2 MUTATED          1        2         0         0          2          0
  OR10G2 WILD-TYPE       36       51        11        23         31          6
                  vv
clus               STAGE IV
  OR10G2 MUTATED          0
  OR10G2 WILD-TYPE        9
D189V3, multiclass
                  vv
clus                T1  T2  T3  T4
  OR10G2 MUTATED     2   3   0   0
  OR10G2 WILD-TYPE  39 106  14   8
D189V4, multiclass
    clus
vv   OR10G2 MUTATED OR10G2 WILD-TYPE
  T1              2               39
  T2              3              106
  T3              0               14
  T4              0                8
                  vv
clus               N0 N1 N2+N3
  OR10G2 MUTATED    3  0     2
  OR10G2 WILD-TYPE 92 37    33
D189V5, multiclass
       clus
vv      OR10G2 MUTATED OR10G2 WILD-TYPE
  N0                 3               92
  N1                 0               37
  N2+N3              2               33
                  vv
clus                M0  M1  MX
  OR10G2 MUTATED     2   0   3
  OR10G2 WILD-TYPE 141   9  15
D189V6, multiclass
    clus
vv   OR10G2 MUTATED OR10G2 WILD-TYPE
  M0              2              141
  M1              0                9
  MX              3               15
D189V7, binary
                  cls
clus                0  1
  OR10G2 MUTATED    2  3
  OR10G2 WILD-TYPE 91 76
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10G2 MUTATED      2    3
  OR10G2 WILD-TYPE   91   76
        clus
vv       OR10G2 MUTATED OR10G2 WILD-TYPE
  FEMALE              2               91
  MALE                3               76
D189V8, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  OR10G2 MUTATED                            0                                 1
  OR10G2 WILD-TYPE                          2                                38
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR10G2 MUTATED                                                    2
  OR10G2 WILD-TYPE                                                113
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  OR10G2 MUTATED                                            0
  OR10G2 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  OR10G2 MUTATED                                               1
  OR10G2 WILD-TYPE                                             1
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  OR10G2 MUTATED                                1
  OR10G2 WILD-TYPE                              1
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  OR10G2 MUTATED                                    0
  OR10G2 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  OR10G2 MUTATED                              0                             0
  OR10G2 WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  OR10G2 MUTATED                                               0
  OR10G2 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  OR10G2 MUTATED                              0
  OR10G2 WILD-TYPE                            2
D189V9, multiclass
D189V10, binary
                  cls
clus                 0   1
  OR10G2 MUTATED     1   4
  OR10G2 WILD-TYPE  13 154
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10G2 MUTATED      1    4
  OR10G2 WILD-TYPE   13  154
     clus
vv    OR10G2 MUTATED OR10G2 WILD-TYPE
  NO               1               13
  YES              4              154
D189V11, continuous
[1] "Remove cluster labels:" "OR10G2 MUTATED"        
clus
  OR10G2 MUTATED OR10G2 WILD-TYPE 
               2              110 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-05-4382 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-05-4384       TCGA-05-4389       TCGA-05-4390       TCGA-05-4396 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-05-4397       TCGA-05-4398       TCGA-05-4405       TCGA-05-4410 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-05-5428       TCGA-35-4122       TCGA-35-4123       TCGA-35-5375 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-38-4625       TCGA-38-4626       TCGA-38-4629       TCGA-38-4631 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-38-4632       TCGA-44-2655       TCGA-44-2656       TCGA-44-2657 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-44-2659       TCGA-44-2662       TCGA-44-2666       TCGA-44-2668 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-44-3396       TCGA-44-3398       TCGA-44-3918       TCGA-44-4112 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-44-5643       TCGA-44-5645       TCGA-44-6144       TCGA-44-6145 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-44-6146       TCGA-44-6148       TCGA-44-6774       TCGA-44-6775 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-44-6776       TCGA-44-6777       TCGA-44-6778       TCGA-44-6779 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-49-4486       TCGA-49-4487       TCGA-49-4490       TCGA-49-4494 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-49-4505       TCGA-49-4506       TCGA-49-4507       TCGA-49-4510 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-49-4514       TCGA-49-6742       TCGA-49-6744       TCGA-49-6745 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-49-6767       TCGA-50-5051       TCGA-50-5072       TCGA-50-5931 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-6590 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-6543       TCGA-64-1676       TCGA-64-1677 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-64-5774       TCGA-64-5775 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-64-5778       TCGA-64-5779       TCGA-64-5781       TCGA-64-5815 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-75-5122       TCGA-75-5125       TCGA-75-5126       TCGA-75-6203 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-75-6206       TCGA-75-6207       TCGA-75-6211       TCGA-80-5611 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-91-6835       TCGA-91-6836 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
D189V12, continuous
[1] "Remove cluster labels:" "OR10G2 MUTATED"        
clus
  OR10G2 MUTATED OR10G2 WILD-TYPE 
               2               66 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4396       TCGA-05-4405 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-05-4410       TCGA-05-4415       TCGA-05-4417       TCGA-05-4424 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4433       TCGA-05-5420       TCGA-05-5423 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-05-5425       TCGA-05-5428       TCGA-35-4122       TCGA-35-4123 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-35-5375       TCGA-38-4625       TCGA-38-4626       TCGA-44-2655 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2662 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3396       TCGA-44-3398 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-44-3918       TCGA-44-4112       TCGA-44-5645       TCGA-44-6144 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6147       TCGA-44-6148       TCGA-44-6774 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-44-6775       TCGA-44-6776       TCGA-44-6777       TCGA-44-6778 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-44-6779       TCGA-49-4486       TCGA-49-4494       TCGA-49-4505 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6712       TCGA-64-1677       TCGA-64-1678 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-73-4659       TCGA-73-4662 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-73-4666       TCGA-73-4668       TCGA-73-4670       TCGA-73-4675 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
      TCGA-73-4676       TCGA-91-6836 
"OR10G2 WILD-TYPE" "OR10G2 WILD-TYPE" 
                  vv
clus                R0  R1  R2  RX
  OR10G2 MUTATED     3   0   0   0
  OR10G2 WILD-TYPE 112   6   4   9
D189V13, multiclass
    clus
vv   OR10G2 MUTATED OR10G2 WILD-TYPE
  R0              3              112
  R1              0                6
  R2              0                4
  RX              0                9

Clustering(190) Variable = CYP4V2 MUTATION ANALYSIS
D190V1, survival
                  sevent
clus2               0  1
  CYP4V2 MUTATED    2  4
  CYP4V2 WILD-TYPE 97 52
  CYP4V2 MUTATED CYP4V2 WILD-TYPE 
               6              149 
  CYP4V2 MUTATED CYP4V2 WILD-TYPE 
               4               52 
$`CYP4V2 MUTATED`
TCGA-05-4384 TCGA-05-4396 TCGA-38-4632 TCGA-49-4501 TCGA-55-6712 TCGA-91-6829 
       14.01         9.96        44.61        46.72         0.79        41.33 

$`CYP4V2 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4389 TCGA-05-4390 TCGA-05-4397 
       50.07         3.98        19.92        45.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        4.96        28.96        22.03         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-44-2655 
       49.02        28.37        35.28        11.64        14.73        21.93 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       46.98        13.15        44.94        24.36        42.08        42.77 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        37.15        38.24        23.51         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
       23.74        13.71        12.59        13.38        10.78         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
       27.78        11.90         5.42        12.16        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       36.49        16.41        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       35.54        14.07        32.84         8.81        29.46         5.16 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       55.89        15.02        12.13        29.26        17.13        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        70.55        14.96        25.81        31.04        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12        18.64        29.00        25.12        22.55 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
        0.07        32.61        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       87.98         2.04        42.90        28.41        51.25        28.44 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99        20.02        18.84        14.04        12.66         5.69 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        4.60        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       26.27        15.35         4.27         1.32         5.39         1.25 
TCGA-86-6562 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       12.36        10.62        10.16         2.60        13.71 

  CYP4V2 MUTATED CYP4V2 WILD-TYPE 
            0.79             0.07 
  CYP4V2 MUTATED CYP4V2 WILD-TYPE 
           46.72           120.79 
  CYP4V2 MUTATED CYP4V2 WILD-TYPE 
           27.67            20.65 
[1] "0.8 - 46.7 (27.7)"  "0.1 - 120.8 (20.6)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" "CYP4V2 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" "CYP4V2 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
  "CYP4V2 MUTATED" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
  "CYP4V2 MUTATED" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" "CYP4V2 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" "CYP4V2 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
  "CYP4V2 MUTATED" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
  "CYP4V2 MUTATED" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" "CYP4V2 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" "CYP4V2 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
  "CYP4V2 MUTATED" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
  "CYP4V2 MUTATED" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE"   "CYP4V2 MUTATED" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" "CYP4V2 WILD-TYPE" 
[1] "hr=" "1.7"
D190V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  CYP4V2 MUTATED          0        2         1         0          1          1
  CYP4V2 WILD-TYPE       37       51        10        23         32          5
                  vv
clus               STAGE IV
  CYP4V2 MUTATED          1
  CYP4V2 WILD-TYPE        8
D190V3, multiclass
                  vv
clus                T1  T2  T3  T4
  CYP4V2 MUTATED     0   5   0   1
  CYP4V2 WILD-TYPE  41 104  14   7
D190V4, multiclass
    clus
vv   CYP4V2 MUTATED CYP4V2 WILD-TYPE
  T1              0               41
  T2              5              104
  T3              0               14
  T4              1                7
                  vv
clus               N0 N1 N2+N3
  CYP4V2 MUTATED    2  3     1
  CYP4V2 WILD-TYPE 93 34    34
D190V5, multiclass
       clus
vv      CYP4V2 MUTATED CYP4V2 WILD-TYPE
  N0                 2               93
  N1                 3               34
  N2+N3              1               34
                  vv
clus                M0  M1  MX
  CYP4V2 MUTATED     3   1   2
  CYP4V2 WILD-TYPE 140   8  16
D190V6, multiclass
    clus
vv   CYP4V2 MUTATED CYP4V2 WILD-TYPE
  M0              3              140
  M1              1                8
  MX              2               16
D190V7, binary
                  cls
clus                0  1
  CYP4V2 MUTATED    1  5
  CYP4V2 WILD-TYPE 92 74
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CYP4V2 MUTATED      1    5
  CYP4V2 WILD-TYPE   92   74
        clus
vv       CYP4V2 MUTATED CYP4V2 WILD-TYPE
  FEMALE              1               92
  MALE                5               74
D190V8, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  CYP4V2 MUTATED                            0                                 2
  CYP4V2 WILD-TYPE                          2                                37
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CYP4V2 MUTATED                                                    3
  CYP4V2 WILD-TYPE                                                112
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  CYP4V2 MUTATED                                            0
  CYP4V2 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  CYP4V2 MUTATED                                               1
  CYP4V2 WILD-TYPE                                             1
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  CYP4V2 MUTATED                                0
  CYP4V2 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  CYP4V2 MUTATED                                    0
  CYP4V2 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  CYP4V2 MUTATED                              0                             0
  CYP4V2 WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  CYP4V2 MUTATED                                               0
  CYP4V2 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  CYP4V2 MUTATED                              0
  CYP4V2 WILD-TYPE                            2
D190V9, multiclass
D190V10, binary
                  cls
clus                 0   1
  CYP4V2 MUTATED     0   6
  CYP4V2 WILD-TYPE  14 152
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CYP4V2 MUTATED      0    6
  CYP4V2 WILD-TYPE   14  152
     clus
vv    CYP4V2 MUTATED CYP4V2 WILD-TYPE
  NO               0               14
  YES              6              152
D190V11, continuous
D190V12, continuous
                  vv
clus                R0  R1  R2  RX
  CYP4V2 MUTATED     4   0   0   1
  CYP4V2 WILD-TYPE 111   6   4   8
D190V13, multiclass
    clus
vv   CYP4V2 MUTATED CYP4V2 WILD-TYPE
  R0              4              111
  R1              0                6
  R2              0                4
  RX              1                8

Clustering(191) Variable = EIF2C1 MUTATION ANALYSIS
D191V1, survival
                  sevent
clus2               0  1
  EIF2C1 MUTATED    3  1
  EIF2C1 WILD-TYPE 96 55
  EIF2C1 MUTATED EIF2C1 WILD-TYPE 
               4              151 
  EIF2C1 MUTATED EIF2C1 WILD-TYPE 
               1               55 
$`EIF2C1 MUTATED`
TCGA-05-4396 TCGA-44-5645 TCGA-64-1676 TCGA-64-5781 
        9.96        12.59        56.81        51.25 

$`EIF2C1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 
       15.02         4.96        28.96        22.03         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        97.74       120.79 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       14.73        21.93        46.98        13.15        44.94        24.36 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       42.08        42.77         3.19         8.09        37.15        38.24 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-6144 TCGA-44-6145 
       23.51         6.21        23.74        13.71        13.38        10.78 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93        27.78        11.90         5.42        12.16        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46         5.16        55.89        15.02        12.13        29.26 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
       17.13        20.48        71.47        70.55        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       31.04        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12        18.64        29.00 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       25.12        22.55        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1677 
       45.17         2.86         0.07        32.61         0.79        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        87.98         2.04        42.90        28.41 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       28.44         0.99        20.02        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        5.69         4.60        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        26.27        15.35         4.27         1.32         5.39 
TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.25        12.36        10.62        41.33        10.16         2.60 
TCGA-91-6836 
       13.71 

  EIF2C1 MUTATED EIF2C1 WILD-TYPE 
            9.96             0.07 
  EIF2C1 MUTATED EIF2C1 WILD-TYPE 
           56.81           120.79 
  EIF2C1 MUTATED EIF2C1 WILD-TYPE 
           31.92            20.65 
[1] "10.0 - 56.8 (31.9)" "0.1 - 120.8 (20.6)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE"   "EIF2C1 MUTATED" "EIF2C1 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE"   "EIF2C1 MUTATED" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"EIF2C1 WILD-TYPE"   "EIF2C1 MUTATED" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"EIF2C1 WILD-TYPE"   "EIF2C1 MUTATED" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE"   "EIF2C1 MUTATED" "EIF2C1 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE"   "EIF2C1 MUTATED" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"EIF2C1 WILD-TYPE"   "EIF2C1 MUTATED" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"EIF2C1 WILD-TYPE"   "EIF2C1 MUTATED" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE"   "EIF2C1 MUTATED" "EIF2C1 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE"   "EIF2C1 MUTATED" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"EIF2C1 WILD-TYPE"   "EIF2C1 MUTATED" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"EIF2C1 WILD-TYPE"   "EIF2C1 MUTATED" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
[1] "hr=" "2.3"
D191V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  EIF2C1 MUTATED          2        1         0         0          0          1
  EIF2C1 WILD-TYPE       35       52        11        23         33          5
                  vv
clus               STAGE IV
  EIF2C1 MUTATED          0
  EIF2C1 WILD-TYPE        9
D191V3, multiclass
                  vv
clus                T1  T2  T3  T4
  EIF2C1 MUTATED     2   1   0   1
  EIF2C1 WILD-TYPE  39 108  14   7
D191V4, multiclass
    clus
vv   EIF2C1 MUTATED EIF2C1 WILD-TYPE
  T1              2               39
  T2              1              108
  T3              0               14
  T4              1                7
                  vv
clus               N0 N1 N2+N3
  EIF2C1 MUTATED    2  1     0
  EIF2C1 WILD-TYPE 93 36    35
D191V5, multiclass
       clus
vv      EIF2C1 MUTATED EIF2C1 WILD-TYPE
  N0                 2               93
  N1                 1               36
  N2+N3              0               35
                  vv
clus                M0  M1  MX
  EIF2C1 MUTATED     3   0   0
  EIF2C1 WILD-TYPE 140   9  18
D191V6, multiclass
    clus
vv   EIF2C1 MUTATED EIF2C1 WILD-TYPE
  M0              3              140
  M1              0                9
  MX              0               18
D191V7, binary
                  cls
clus                0  1
  EIF2C1 MUTATED    2  2
  EIF2C1 WILD-TYPE 91 77
[1] "tbl2"
                  cls
clus               [,1] [,2]
  EIF2C1 MUTATED      2    2
  EIF2C1 WILD-TYPE   91   77
        clus
vv       EIF2C1 MUTATED EIF2C1 WILD-TYPE
  FEMALE              2               91
  MALE                2               77
D191V8, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  EIF2C1 MUTATED                            0                                 2
  EIF2C1 WILD-TYPE                          2                                37
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  EIF2C1 MUTATED                                                    2
  EIF2C1 WILD-TYPE                                                113
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  EIF2C1 MUTATED                                            0
  EIF2C1 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  EIF2C1 MUTATED                                               0
  EIF2C1 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  EIF2C1 MUTATED                                0
  EIF2C1 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  EIF2C1 MUTATED                                    0
  EIF2C1 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  EIF2C1 MUTATED                              0                             0
  EIF2C1 WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  EIF2C1 MUTATED                                               0
  EIF2C1 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  EIF2C1 MUTATED                              0
  EIF2C1 WILD-TYPE                            2
D191V9, multiclass
D191V10, binary
                  cls
clus                 0   1
  EIF2C1 MUTATED     0   4
  EIF2C1 WILD-TYPE  14 154
[1] "tbl2"
                  cls
clus               [,1] [,2]
  EIF2C1 MUTATED      0    4
  EIF2C1 WILD-TYPE   14  154
     clus
vv    EIF2C1 MUTATED EIF2C1 WILD-TYPE
  NO               0               14
  YES              4              154
D191V11, continuous
D191V12, continuous
                  vv
clus                R0  R1  R2  RX
  EIF2C1 MUTATED     3   0   0   0
  EIF2C1 WILD-TYPE 112   6   4   9
D191V13, multiclass
    clus
vv   EIF2C1 MUTATED EIF2C1 WILD-TYPE
  R0              3              112
  R1              0                6
  R2              0                4
  RX              0                9

Clustering(192) Variable = CCDC39 MUTATION ANALYSIS
D192V1, survival
                  sevent
clus2               0  1
  CCDC39 MUTATED    6  1
  CCDC39 WILD-TYPE 93 55
  CCDC39 MUTATED CCDC39 WILD-TYPE 
               7              148 
  CCDC39 MUTATED CCDC39 WILD-TYPE 
               1               55 
$`CCDC39 MUTATED`
TCGA-05-4397 TCGA-05-4405 TCGA-38-6178 TCGA-44-2659 TCGA-49-6743 TCGA-55-1594 
       24.03        20.05        14.73        44.94        12.13        38.73 
TCGA-73-4668 
       15.35 

$`CCDC39 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4415 TCGA-05-4417 
        9.96        47.05         8.02        19.00         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        4.96        28.96        22.03         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-44-2655 
       49.02        28.37        35.28        11.64        44.61        21.93 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       46.98        13.15        24.36        42.08        42.77         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        37.15        38.24        23.51         6.21        23.74 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       13.71        12.59        13.38        10.78         9.93        27.78 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
       11.90         5.42        12.16        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46         5.16 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       55.89        15.02        29.26        17.13        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       70.55        14.96        25.81        31.04        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12        18.64        29.00        25.12        22.55        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       23.05        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        87.98 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        2.04        42.90        28.41        51.25        28.44         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       20.02        18.84        14.04        12.66         5.69         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        26.27 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 
        4.27         1.32         5.39         1.25        12.36        10.62 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       41.33        10.16         2.60        13.71 

  CCDC39 MUTATED CCDC39 WILD-TYPE 
           12.13             0.07 
  CCDC39 MUTATED CCDC39 WILD-TYPE 
           44.94           120.79 
  CCDC39 MUTATED CCDC39 WILD-TYPE 
           20.05            21.06 
[1] "12.1 - 44.9 (20.1)" "0.1 - 120.8 (21.1)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE"   "CCDC39 MUTATED" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE"   "CCDC39 MUTATED" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE"   "CCDC39 MUTATED" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE"   "CCDC39 MUTATED" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
  "CCDC39 MUTATED" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE"   "CCDC39 MUTATED" "CCDC39 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
  "CCDC39 MUTATED" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE"   "CCDC39 MUTATED" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE"   "CCDC39 MUTATED" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE"   "CCDC39 MUTATED" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE"   "CCDC39 MUTATED" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
  "CCDC39 MUTATED" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE"   "CCDC39 MUTATED" "CCDC39 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
  "CCDC39 MUTATED" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE"   "CCDC39 MUTATED" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE"   "CCDC39 MUTATED" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE"   "CCDC39 MUTATED" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE"   "CCDC39 MUTATED" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
  "CCDC39 MUTATED" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE"   "CCDC39 MUTATED" "CCDC39 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
  "CCDC39 MUTATED" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
[1] "hr=" "2.5"
D192V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  CCDC39 MUTATED          0        1         0         3          3          0
  CCDC39 WILD-TYPE       37       52        11        20         30          6
                  vv
clus               STAGE IV
  CCDC39 MUTATED          0
  CCDC39 WILD-TYPE        9
D192V3, multiclass
                  vv
clus                T1  T2  T3  T4
  CCDC39 MUTATED     2   5   0   0
  CCDC39 WILD-TYPE  39 104  14   8
D192V4, multiclass
    clus
vv   CCDC39 MUTATED CCDC39 WILD-TYPE
  T1              2               39
  T2              5              104
  T3              0               14
  T4              0                8
                  vv
clus               N0 N1 N2+N3
  CCDC39 MUTATED    1  3     3
  CCDC39 WILD-TYPE 94 34    32
D192V5, multiclass
       clus
vv      CCDC39 MUTATED CCDC39 WILD-TYPE
  N0                 1               94
  N1                 3               34
  N2+N3              3               32
                  vv
clus                M0  M1  MX
  CCDC39 MUTATED     5   0   1
  CCDC39 WILD-TYPE 138   9  17
D192V6, multiclass
    clus
vv   CCDC39 MUTATED CCDC39 WILD-TYPE
  M0              5              138
  M1              0                9
  MX              1               17
D192V7, binary
                  cls
clus                0  1
  CCDC39 MUTATED    5  2
  CCDC39 WILD-TYPE 88 77
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CCDC39 MUTATED      5    2
  CCDC39 WILD-TYPE   88   77
        clus
vv       CCDC39 MUTATED CCDC39 WILD-TYPE
  FEMALE              5               88
  MALE                2               77
D192V8, continuous
[1] "Remove cluster labels:" "CCDC39 MUTATED"        
clus
  CCDC39 MUTATED CCDC39 WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-64-5778       TCGA-71-6725       TCGA-73-4659       TCGA-73-4662 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-73-4666       TCGA-73-4676       TCGA-75-5122 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  CCDC39 MUTATED                            0                                 2
  CCDC39 WILD-TYPE                          2                                37
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CCDC39 MUTATED                                                    3
  CCDC39 WILD-TYPE                                                112
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  CCDC39 MUTATED                                            0
  CCDC39 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  CCDC39 MUTATED                                               0
  CCDC39 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  CCDC39 MUTATED                                1
  CCDC39 WILD-TYPE                              1
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  CCDC39 MUTATED                                    1
  CCDC39 WILD-TYPE                                  1
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  CCDC39 MUTATED                              0                             0
  CCDC39 WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  CCDC39 MUTATED                                               0
  CCDC39 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  CCDC39 MUTATED                              0
  CCDC39 WILD-TYPE                            2
D192V9, multiclass
D192V10, binary
                  cls
clus                 0   1
  CCDC39 MUTATED     0   7
  CCDC39 WILD-TYPE  14 151
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CCDC39 MUTATED      0    7
  CCDC39 WILD-TYPE   14  151
     clus
vv    CCDC39 MUTATED CCDC39 WILD-TYPE
  NO               0               14
  YES              7              151
D192V11, continuous
D192V12, continuous
                  vv
clus                R0  R1  R2  RX
  CCDC39 MUTATED     5   1   0   0
  CCDC39 WILD-TYPE 110   5   4   9
D192V13, multiclass
    clus
vv   CCDC39 MUTATED CCDC39 WILD-TYPE
  R0              5              110
  R1              1                5
  R2              0                4
  RX              0                9

Clustering(193) Variable = FAM5C MUTATION ANALYSIS
D193V1, survival
                 sevent
clus2              0  1
  FAM5C MUTATED   18  8
  FAM5C WILD-TYPE 81 48
  FAM5C MUTATED FAM5C WILD-TYPE 
             26             129 
  FAM5C MUTATED FAM5C WILD-TYPE 
              8              48 
$`FAM5C MUTATED`
TCGA-05-4250 TCGA-05-4390 TCGA-05-4397 TCGA-05-4415 TCGA-05-4424 TCGA-05-4432 
        3.98        37.02        24.03         2.96        30.02        25.02 
TCGA-05-5428 TCGA-44-2655 TCGA-44-2656 TCGA-44-3918 TCGA-44-5643 TCGA-44-6774 
       22.03        21.93        46.98        23.51        13.71         5.42 
TCGA-44-6777 TCGA-49-6742 TCGA-50-5049 TCGA-50-5944 TCGA-50-6593 TCGA-50-6595 
       32.45        15.02        70.55        25.12        11.05         6.21 
TCGA-55-1596 TCGA-64-1677 TCGA-64-5779 TCGA-67-3771 TCGA-73-4666 TCGA-91-6828 
       45.17        20.65        28.41        20.02        26.27        10.62 
TCGA-91-6829 TCGA-91-6836 
       41.33        13.71 

$`FAM5C WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4396 TCGA-05-4398 
       50.07        19.92        14.01        45.01         9.96        47.05 
TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        19.00        20.05        14.93         8.98        29.95 
TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 
       12.00        21.99        26.01        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02        15.02         4.96        28.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        97.74       120.79 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       14.73        13.15        44.94        24.36        42.08        42.77 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 
        3.19         8.09        37.15        38.24         6.21        23.74 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
       12.59        13.38        10.78         9.93        27.78        11.90 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       12.16        63.72        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 
        8.81        29.46         5.16        55.89        12.13        29.26 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       17.13        20.48        71.47        14.96        25.81        31.04 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5946 
       21.47         8.45        15.12        18.64        29.00        22.55 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6594 TCGA-50-6597 TCGA-55-1592 
       42.31         3.88        25.51        12.16        33.37        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       38.73        48.62         2.86         0.07        32.61         0.79 
TCGA-64-1676 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       56.81        39.09        37.02        87.98         2.04        42.90 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       51.25        28.44         0.99        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        5.69         4.60        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       29.95        15.35         4.27         1.32         5.39         1.25 
TCGA-86-6562 TCGA-91-6831 TCGA-91-6835 
       12.36        10.16         2.60 

  FAM5C MUTATED FAM5C WILD-TYPE 
           2.96            0.07 
  FAM5C MUTATED FAM5C WILD-TYPE 
          70.55          120.79 
  FAM5C MUTATED FAM5C WILD-TYPE 
          22.77           19.92 
[1] "3.0 - 70.5 (22.8)"  "0.1 - 120.8 (19.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
  "FAM5C MUTATED"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED"   "FAM5C MUTATED" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
  "FAM5C MUTATED"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED"   "FAM5C MUTATED" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
  "FAM5C MUTATED"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED"   "FAM5C MUTATED" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
[1] "hr=" "1.1"
D193V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  FAM5C MUTATED          6        6         1         5          8          1
  FAM5C WILD-TYPE       31       47        10        18         25          5
                 vv
clus              STAGE IV
  FAM5C MUTATED          1
  FAM5C WILD-TYPE        8
D193V3, multiclass
                 vv
clus              T1 T2 T3 T4
  FAM5C MUTATED    9 15  3  1
  FAM5C WILD-TYPE 32 94 11  7
D193V4, multiclass
    clus
vv   FAM5C MUTATED FAM5C WILD-TYPE
  T1             9              32
  T2            15              94
  T3             3              11
  T4             1               7
                 vv
clus              N0 N1 N2+N3
  FAM5C MUTATED   13  6     8
  FAM5C WILD-TYPE 82 31    27
D193V5, multiclass
       clus
vv      FAM5C MUTATED FAM5C WILD-TYPE
  N0               13              82
  N1                6              31
  N2+N3             8              27
                 vv
clus               M0  M1  MX
  FAM5C MUTATED    24   1   3
  FAM5C WILD-TYPE 119   8  15
D193V6, multiclass
    clus
vv   FAM5C MUTATED FAM5C WILD-TYPE
  M0            24             119
  M1             1               8
  MX             3              15
D193V7, binary
                 cls
clus               0  1
  FAM5C MUTATED   14 14
  FAM5C WILD-TYPE 79 65
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FAM5C MUTATED     14   14
  FAM5C WILD-TYPE   79   65
        clus
vv       FAM5C MUTATED FAM5C WILD-TYPE
  FEMALE            14              79
  MALE              14              65
D193V8, continuous
[1] "Remove cluster labels:" "FAM5C MUTATED"         
clus
  FAM5C MUTATED FAM5C WILD-TYPE 
              2              10 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-64-5778 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4659      TCGA-73-4662      TCGA-73-4668 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-73-4676      TCGA-75-5122 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  FAM5C MUTATED                            2                                 8
  FAM5C WILD-TYPE                          0                                31
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  FAM5C MUTATED                                                   15
  FAM5C WILD-TYPE                                                100
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  FAM5C MUTATED                                            0
  FAM5C WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  FAM5C MUTATED                                               1
  FAM5C WILD-TYPE                                             1
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  FAM5C MUTATED                                0
  FAM5C WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  FAM5C MUTATED                                    0
  FAM5C WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  FAM5C MUTATED                              0                             1
  FAM5C WILD-TYPE                            2                             3
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  FAM5C MUTATED                                               0
  FAM5C WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  FAM5C MUTATED                              1
  FAM5C WILD-TYPE                            1
D193V9, multiclass
D193V10, binary
                 cls
clus                0   1
  FAM5C MUTATED     5  23
  FAM5C WILD-TYPE   9 135
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FAM5C MUTATED      5   23
  FAM5C WILD-TYPE    9  135
     clus
vv    FAM5C MUTATED FAM5C WILD-TYPE
  NO              5               9
  YES            23             135
D193V11, continuous
D193V12, continuous
                 vv
clus              R0 R1 R2 RX
  FAM5C MUTATED   17  1  2  1
  FAM5C WILD-TYPE 98  5  2  8
D193V13, multiclass
    clus
vv   FAM5C MUTATED FAM5C WILD-TYPE
  R0            17              98
  R1             1               5
  R2             2               2
  RX             1               8

Clustering(194) Variable = TKTL1 MUTATION ANALYSIS
D194V1, survival
                 sevent
clus2              0  1
  TKTL1 MUTATED    2  3
  TKTL1 WILD-TYPE 97 53
  TKTL1 MUTATED TKTL1 WILD-TYPE 
              5             150 
  TKTL1 MUTATED TKTL1 WILD-TYPE 
              3              53 
$`TKTL1 MUTATED`
TCGA-05-4396 TCGA-05-4402 TCGA-38-4626 TCGA-38-4631 TCGA-44-5645 
        9.96         8.02       120.79        11.64        12.59 

$`TKTL1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        4.96        28.96        22.03         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 
        7.36         5.95         8.68        97.74        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 
       28.37        35.28        44.61        14.73        21.93        46.98 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        44.94        24.36        42.08        42.77         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        37.15        38.24        23.51         6.21        23.74 
TCGA-44-5643 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
       13.71        13.38        10.78         9.93        27.78        11.90 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42        12.16        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46         5.16        55.89 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        29.26        17.13        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       70.55        14.96        25.81        31.04        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12        18.64        29.00        25.12        22.55        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       32.61         0.79        56.81        20.65        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       87.98         2.04        42.90        28.41        51.25        28.44 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99        20.02        18.84        14.04        12.66         5.69 
TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        4.60        13.87         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       26.27        15.35         4.27         1.32         5.39         1.25 
TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       12.36        10.62        41.33        10.16         2.60        13.71 

  TKTL1 MUTATED TKTL1 WILD-TYPE 
           8.02            0.07 
  TKTL1 MUTATED TKTL1 WILD-TYPE 
         120.79           97.74 
  TKTL1 MUTATED TKTL1 WILD-TYPE 
          11.64           21.70 
[1] "8.0 - 120.8 (11.6)" "0.1 - 97.7 (21.7)" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE"   "TKTL1 MUTATED" "TKTL1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"TKTL1 WILD-TYPE"   "TKTL1 MUTATED" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
  "TKTL1 MUTATED" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"TKTL1 WILD-TYPE"   "TKTL1 MUTATED" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE"   "TKTL1 MUTATED" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE"   "TKTL1 MUTATED" "TKTL1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"TKTL1 WILD-TYPE"   "TKTL1 MUTATED" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
  "TKTL1 MUTATED" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"TKTL1 WILD-TYPE"   "TKTL1 MUTATED" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE"   "TKTL1 MUTATED" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE"   "TKTL1 MUTATED" "TKTL1 WILD-TYPE" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"TKTL1 WILD-TYPE"   "TKTL1 MUTATED" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
  "TKTL1 MUTATED" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"TKTL1 WILD-TYPE"   "TKTL1 MUTATED" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE"   "TKTL1 MUTATED" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" "TKTL1 WILD-TYPE" 
[1] "hr=" "1.5"
D194V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  TKTL1 MUTATED          1        1         1         0          0          1
  TKTL1 WILD-TYPE       36       52        10        23         33          5
                 vv
clus              STAGE IV
  TKTL1 MUTATED          1
  TKTL1 WILD-TYPE        8
D194V3, multiclass
                 vv
clus               T1  T2  T3  T4
  TKTL1 MUTATED     1   3   0   1
  TKTL1 WILD-TYPE  40 106  14   7
D194V4, multiclass
    clus
vv   TKTL1 MUTATED TKTL1 WILD-TYPE
  T1             1              40
  T2             3             106
  T3             0              14
  T4             1               7
                 vv
clus              N0 N1 N2+N3
  TKTL1 MUTATED    2  1     0
  TKTL1 WILD-TYPE 93 36    35
D194V5, multiclass
       clus
vv      TKTL1 MUTATED TKTL1 WILD-TYPE
  N0                2              93
  N1                1              36
  N2+N3             0              35
                 vv
clus               M0  M1  MX
  TKTL1 MUTATED     3   1   0
  TKTL1 WILD-TYPE 140   8  18
D194V6, multiclass
    clus
vv   TKTL1 MUTATED TKTL1 WILD-TYPE
  M0             3             140
  M1             1               8
  MX             0              18
D194V7, binary
                 cls
clus               0  1
  TKTL1 MUTATED    4  1
  TKTL1 WILD-TYPE 89 78
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TKTL1 MUTATED      4    1
  TKTL1 WILD-TYPE   89   78
        clus
vv       TKTL1 MUTATED TKTL1 WILD-TYPE
  FEMALE             4              89
  MALE               1              78
D194V8, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  TKTL1 MUTATED                            0                                 2
  TKTL1 WILD-TYPE                          2                                37
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  TKTL1 MUTATED                                                    3
  TKTL1 WILD-TYPE                                                112
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  TKTL1 MUTATED                                            0
  TKTL1 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  TKTL1 MUTATED                                               0
  TKTL1 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  TKTL1 MUTATED                                0
  TKTL1 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  TKTL1 MUTATED                                    0
  TKTL1 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  TKTL1 MUTATED                              0                             0
  TKTL1 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  TKTL1 MUTATED                                               0
  TKTL1 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  TKTL1 MUTATED                              0
  TKTL1 WILD-TYPE                            2
D194V9, multiclass
D194V10, binary
                 cls
clus                0   1
  TKTL1 MUTATED     0   5
  TKTL1 WILD-TYPE  14 153
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TKTL1 MUTATED      0    5
  TKTL1 WILD-TYPE   14  153
     clus
vv    TKTL1 MUTATED TKTL1 WILD-TYPE
  NO              0              14
  YES             5             153
D194V11, continuous
D194V12, continuous
                 vv
clus               R0  R1  R2  RX
  TKTL1 MUTATED     3   0   1   0
  TKTL1 WILD-TYPE 112   6   3   9
D194V13, multiclass
    clus
vv   TKTL1 MUTATED TKTL1 WILD-TYPE
  R0             3             112
  R1             0               6
  R2             1               3
  RX             0               9

Clustering(195) Variable = SLC22A6 MUTATION ANALYSIS
D195V1, survival
                   sevent
clus2                0  1
  SLC22A6 MUTATED    6  2
  SLC22A6 WILD-TYPE 93 54
  SLC22A6 MUTATED SLC22A6 WILD-TYPE 
                8               147 
  SLC22A6 MUTATED SLC22A6 WILD-TYPE 
                2                54 
$`SLC22A6 MUTATED`
TCGA-05-4434 TCGA-35-4123 TCGA-44-2656 TCGA-44-2666 TCGA-44-6775 TCGA-55-5899 
       15.02         5.95        46.98         3.19        12.16         2.86 
TCGA-64-1676 TCGA-67-3771 
       56.81        20.02 

$`SLC22A6 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       21.99        26.01        26.01        25.02        25.02        24.00 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 
       15.02         4.96        28.96        22.03         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61        14.73 
TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       21.93        13.15        44.94        24.36        42.08        42.77 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        37.15        38.24        23.51         6.21        23.74 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       13.71        12.59        13.38        10.78         9.93        27.78 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
       11.90         5.42        63.72        32.45        36.49        16.41 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46         5.16        55.89 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        29.26        17.13        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       70.55        14.96        25.81        31.04        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12        18.64        29.00        25.12        22.55        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 
       23.05        38.73        48.62        45.17         0.07        32.61 
TCGA-55-6712 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
        0.79        20.65        39.09        37.02        87.98         2.04 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 
       42.90        28.41        51.25        28.44         0.99        18.84 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
       14.04        12.66         5.69         4.60        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        26.27        15.35         4.27 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 
        1.32         5.39         1.25        12.36        10.62        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       10.16         2.60        13.71 

  SLC22A6 MUTATED SLC22A6 WILD-TYPE 
             2.86              0.07 
  SLC22A6 MUTATED SLC22A6 WILD-TYPE 
            56.81            120.79 
  SLC22A6 MUTATED SLC22A6 WILD-TYPE 
            13.59             21.93 
[1] "2.9 - 56.8 (13.6)"  "0.1 - 120.8 (21.9)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
  "SLC22A6 MUTATED" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"SLC22A6 WILD-TYPE"   "SLC22A6 MUTATED" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"SLC22A6 WILD-TYPE"   "SLC22A6 MUTATED" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE"   "SLC22A6 MUTATED" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE"   "SLC22A6 MUTATED" "SLC22A6 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"SLC22A6 WILD-TYPE"   "SLC22A6 MUTATED" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"SLC22A6 WILD-TYPE"   "SLC22A6 MUTATED" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
  "SLC22A6 MUTATED" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
  "SLC22A6 MUTATED" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"SLC22A6 WILD-TYPE"   "SLC22A6 MUTATED" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"SLC22A6 WILD-TYPE"   "SLC22A6 MUTATED" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE"   "SLC22A6 MUTATED" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE"   "SLC22A6 MUTATED" "SLC22A6 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"SLC22A6 WILD-TYPE"   "SLC22A6 MUTATED" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"SLC22A6 WILD-TYPE"   "SLC22A6 MUTATED" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
  "SLC22A6 MUTATED" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
  "SLC22A6 MUTATED" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"SLC22A6 WILD-TYPE"   "SLC22A6 MUTATED" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-44-2655        TCGA-44-2656        TCGA-44-2657        TCGA-44-2659 
"SLC22A6 WILD-TYPE"   "SLC22A6 MUTATED" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE"   "SLC22A6 MUTATED" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE"   "SLC22A6 MUTATED" "SLC22A6 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4486 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4488        TCGA-49-4490        TCGA-49-4494 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-49-4501        TCGA-49-4505        TCGA-49-4506        TCGA-49-4507 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-49-4510        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-50-5044 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-55-1596        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"SLC22A6 WILD-TYPE"   "SLC22A6 MUTATED" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-55-6712        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"SLC22A6 WILD-TYPE"   "SLC22A6 MUTATED" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-64-1680        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-3770 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-67-3771        TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
  "SLC22A6 MUTATED" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-73-4677        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
[1] "hr=" "1.2"
D195V2, continuous
                   vv
clus                STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  SLC22A6 MUTATED          4        3         0         0          0          0
  SLC22A6 WILD-TYPE       33       50        11        23         33          6
                   vv
clus                STAGE IV
  SLC22A6 MUTATED          1
  SLC22A6 WILD-TYPE        8
D195V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  SLC22A6 MUTATED     4   3   0   1
  SLC22A6 WILD-TYPE  37 106  14   7
D195V4, multiclass
    clus
vv   SLC22A6 MUTATED SLC22A6 WILD-TYPE
  T1               4                37
  T2               3               106
  T3               0                14
  T4               1                 7
                   vv
clus                N0 N1 N2+N3
  SLC22A6 MUTATED    6  2     0
  SLC22A6 WILD-TYPE 89 35    35
D195V5, multiclass
       clus
vv      SLC22A6 MUTATED SLC22A6 WILD-TYPE
  N0                  6                89
  N1                  2                35
  N2+N3               0                35
                   vv
clus                 M0  M1  MX
  SLC22A6 MUTATED     6   1   1
  SLC22A6 WILD-TYPE 137   8  17
D195V6, multiclass
    clus
vv   SLC22A6 MUTATED SLC22A6 WILD-TYPE
  M0               6               137
  M1               1                 8
  MX               1                17
D195V7, binary
                   cls
clus                 0  1
  SLC22A6 MUTATED    3  5
  SLC22A6 WILD-TYPE 90 74
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC22A6 MUTATED      3    5
  SLC22A6 WILD-TYPE   90   74
        clus
vv       SLC22A6 MUTATED SLC22A6 WILD-TYPE
  FEMALE               3                90
  MALE                 5                74
D195V8, continuous
[1] "Remove cluster labels:" "SLC22A6 MUTATED"       
clus
  SLC22A6 MUTATED SLC22A6 WILD-TYPE 
                1                11 
       TCGA-35-4122        TCGA-35-5375        TCGA-64-1677        TCGA-64-5778 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4676        TCGA-75-5122 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  SLC22A6 MUTATED                            0
  SLC22A6 WILD-TYPE                          2
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  SLC22A6 MUTATED                                   1
  SLC22A6 WILD-TYPE                                38
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SLC22A6 MUTATED                                                    7
  SLC22A6 WILD-TYPE                                                108
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  SLC22A6 MUTATED                                            0
  SLC22A6 WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  SLC22A6 MUTATED                                               0
  SLC22A6 WILD-TYPE                                             2
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  SLC22A6 MUTATED                                0
  SLC22A6 WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  SLC22A6 MUTATED                                    0
  SLC22A6 WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  SLC22A6 MUTATED                              0                             0
  SLC22A6 WILD-TYPE                            2                             4
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  SLC22A6 MUTATED                                               0
  SLC22A6 WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  SLC22A6 MUTATED                              0
  SLC22A6 WILD-TYPE                            2
D195V9, multiclass
D195V10, binary
                   cls
clus                  0   1
  SLC22A6 MUTATED     0   8
  SLC22A6 WILD-TYPE  14 150
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC22A6 MUTATED      0    8
  SLC22A6 WILD-TYPE   14  150
     clus
vv    SLC22A6 MUTATED SLC22A6 WILD-TYPE
  NO                0                14
  YES               8               150
D195V11, continuous
D195V12, continuous
                   vv
clus                 R0  R1  R2  RX
  SLC22A6 MUTATED     5   0   1   1
  SLC22A6 WILD-TYPE 110   6   3   8
D195V13, multiclass
    clus
vv   SLC22A6 MUTATED SLC22A6 WILD-TYPE
  R0               5               110
  R1               0                 6
  R2               1                 3
  RX               1                 8

Clustering(196) Variable = PPP3CA MUTATION ANALYSIS
D196V1, survival
                  sevent
clus2               0  1
  PPP3CA MUTATED    3  0
  PPP3CA WILD-TYPE 96 56
  PPP3CA MUTATED PPP3CA WILD-TYPE 
               3              152 
  PPP3CA MUTATED PPP3CA WILD-TYPE 
               0               56 
$`PPP3CA MUTATED`
TCGA-05-4422 TCGA-44-5643 TCGA-73-4676 
       12.00        13.71         5.39 

$`PPP3CA WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4425 
        2.96        14.93         8.98        29.95        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 
       15.02         4.96        28.96        22.03         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        97.74       120.79 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
       14.73        21.93        46.98        13.15        44.94        24.36 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       42.08        42.77         3.19         8.09        37.15        38.24 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
       23.51         6.21        23.74        12.59        13.38        10.78 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93        27.78        11.90         5.42        12.16        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       32.45        36.49        16.41        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46         5.16        55.89        15.02        12.13        29.26 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
       17.13        20.48        71.47        70.55        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       31.04        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12        18.64        29.00 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       25.12        22.55        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        87.98         2.04        42.90 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       28.41        51.25        28.44         0.99        20.02        18.84 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 
       14.04        12.66         5.69         4.60        13.87         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        26.27        15.35         4.27 
TCGA-73-4675 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        1.32         1.25        12.36        10.62        41.33        10.16 
TCGA-91-6835 TCGA-91-6836 
        2.60        13.71 

  PPP3CA MUTATED PPP3CA WILD-TYPE 
            5.39             0.07 
  PPP3CA MUTATED PPP3CA WILD-TYPE 
           13.71           120.79 
  PPP3CA MUTATED PPP3CA WILD-TYPE 
            12.0             21.7 
[1] "5.4 - 13.7 (12.0)"  "0.1 - 120.8 (21.7)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
  "PPP3CA MUTATED" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE"   "PPP3CA MUTATED" "PPP3CA WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE"   "PPP3CA MUTATED" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
  "PPP3CA MUTATED" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE"   "PPP3CA MUTATED" "PPP3CA WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE"   "PPP3CA MUTATED" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
  "PPP3CA MUTATED" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE"   "PPP3CA MUTATED" "PPP3CA WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE"   "PPP3CA MUTATED" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
[1] "hr="     "3400000"
D196V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  PPP3CA MUTATED          0        1         1         0          1          0
  PPP3CA WILD-TYPE       37       52        10        23         32          6
                  vv
clus               STAGE IV
  PPP3CA MUTATED          0
  PPP3CA WILD-TYPE        9
D196V3, multiclass
                  vv
clus                T1  T2  T3  T4
  PPP3CA MUTATED     0   3   0   0
  PPP3CA WILD-TYPE  41 106  14   8
D196V4, multiclass
    clus
vv   PPP3CA MUTATED PPP3CA WILD-TYPE
  T1              0               41
  T2              3              106
  T3              0               14
  T4              0                8
                  vv
clus               N0 N1 N2+N3
  PPP3CA MUTATED    1  1     1
  PPP3CA WILD-TYPE 94 36    34
D196V5, multiclass
       clus
vv      PPP3CA MUTATED PPP3CA WILD-TYPE
  N0                 1               94
  N1                 1               36
  N2+N3              1               34
                  vv
clus                M0  M1  MX
  PPP3CA MUTATED     3   0   0
  PPP3CA WILD-TYPE 140   9  18
D196V6, multiclass
    clus
vv   PPP3CA MUTATED PPP3CA WILD-TYPE
  M0              3              140
  M1              0                9
  MX              0               18
D196V7, binary
                  cls
clus                0  1
  PPP3CA MUTATED    0  3
  PPP3CA WILD-TYPE 93 76
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PPP3CA MUTATED      0    3
  PPP3CA WILD-TYPE   93   76
        clus
vv       PPP3CA MUTATED PPP3CA WILD-TYPE
  FEMALE              0               93
  MALE                3               76
D196V8, continuous
[1] "Remove cluster labels:" "PPP3CA MUTATED"        
clus
  PPP3CA MUTATED PPP3CA WILD-TYPE 
               1               11 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-64-1677 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-64-5778       TCGA-71-6725       TCGA-73-4659       TCGA-73-4662 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-73-4666       TCGA-73-4668       TCGA-75-5122 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  PPP3CA MUTATED                            0                                 1
  PPP3CA WILD-TYPE                          2                                38
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  PPP3CA MUTATED                                                    2
  PPP3CA WILD-TYPE                                                113
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  PPP3CA MUTATED                                            0
  PPP3CA WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  PPP3CA MUTATED                                               0
  PPP3CA WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  PPP3CA MUTATED                                0
  PPP3CA WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  PPP3CA MUTATED                                    0
  PPP3CA WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  PPP3CA MUTATED                              0                             0
  PPP3CA WILD-TYPE                            2                             4
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  PPP3CA MUTATED                                               0
  PPP3CA WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  PPP3CA MUTATED                              0
  PPP3CA WILD-TYPE                            2
D196V9, multiclass
D196V10, binary
                  cls
clus                 0   1
  PPP3CA MUTATED     2   1
  PPP3CA WILD-TYPE  12 157
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PPP3CA MUTATED      2    1
  PPP3CA WILD-TYPE   12  157
     clus
vv    PPP3CA MUTATED PPP3CA WILD-TYPE
  NO               2               12
  YES              1              157
D196V11, continuous
D196V12, continuous
[1] "Remove cluster labels:" "PPP3CA MUTATED"        
clus
  PPP3CA MUTATED PPP3CA WILD-TYPE 
               1               67 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4396       TCGA-05-4405 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4410       TCGA-05-4415       TCGA-05-4417       TCGA-05-4424 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4433       TCGA-05-5420       TCGA-05-5423 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-5425       TCGA-05-5428       TCGA-35-4122       TCGA-35-4123 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-35-5375       TCGA-38-4625       TCGA-38-4626       TCGA-44-2655 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2657       TCGA-44-2659       TCGA-44-2662 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3396       TCGA-44-3398 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-3918       TCGA-44-4112       TCGA-44-5645       TCGA-44-6144 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6147       TCGA-44-6148       TCGA-44-6774 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-6775       TCGA-44-6776       TCGA-44-6777       TCGA-44-6778 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-6779       TCGA-49-4486       TCGA-49-4494       TCGA-49-4505 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1595       TCGA-55-1596 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6642       TCGA-55-6712       TCGA-64-1677 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-64-5774       TCGA-64-5775 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-64-5778       TCGA-64-5779       TCGA-64-5781       TCGA-73-4659 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-73-4662       TCGA-73-4666       TCGA-73-4668       TCGA-73-4670 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-73-4675       TCGA-91-6829       TCGA-91-6836 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
                  vv
clus                R0  R1  R2  RX
  PPP3CA MUTATED     2   0   0   0
  PPP3CA WILD-TYPE 113   6   4   9
D196V13, multiclass
[1] "Remove cluster labels:" "PPP3CA MUTATED"        
clus
  PPP3CA MUTATED PPP3CA WILD-TYPE 
               2              132 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-05-4382 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4384       TCGA-05-4389       TCGA-05-4390       TCGA-05-4395 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4396       TCGA-05-4397       TCGA-05-4398       TCGA-05-4402 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4403       TCGA-05-4405       TCGA-05-4410       TCGA-05-4415 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4417       TCGA-05-4418       TCGA-05-4420       TCGA-05-4424 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4425       TCGA-05-4426       TCGA-05-4427       TCGA-05-4430 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4432       TCGA-05-4433       TCGA-05-4434       TCGA-05-5420 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-5423       TCGA-05-5425       TCGA-05-5428       TCGA-05-5429 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-5715       TCGA-35-3615       TCGA-35-4122       TCGA-35-4123 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-35-5375       TCGA-38-4625       TCGA-38-4626       TCGA-38-4627 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-38-4628       TCGA-38-4629       TCGA-38-4630       TCGA-38-4631 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-38-4632       TCGA-38-6178       TCGA-44-2655       TCGA-44-2657 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-2659       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3396       TCGA-44-3398 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-3918       TCGA-44-3919       TCGA-44-4112       TCGA-44-6144 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6775       TCGA-49-4486       TCGA-49-4487 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4494       TCGA-49-4501       TCGA-49-4505 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-4506       TCGA-49-4507       TCGA-49-4510       TCGA-49-4512 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-4514       TCGA-49-6742       TCGA-49-6744       TCGA-49-6767 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5051       TCGA-50-5055       TCGA-50-5066       TCGA-50-5931 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5942       TCGA-50-5944       TCGA-50-6593       TCGA-50-6597 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-55-1592       TCGA-55-1594       TCGA-55-1596       TCGA-55-5899 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-55-6642       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3773       TCGA-67-3774       TCGA-67-4679 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4677 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-75-5122       TCGA-75-5125       TCGA-75-5126       TCGA-75-5146 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-75-5147       TCGA-75-6203       TCGA-75-6205       TCGA-75-6206 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-75-6207       TCGA-75-6211       TCGA-75-6212       TCGA-80-5611 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-86-6562       TCGA-91-6828       TCGA-91-6829       TCGA-91-6835 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 

Clustering(197) Variable = C20ORF132 MUTATION ANALYSIS
D197V1, survival
                     sevent
clus2                  0  1
  C20ORF132 MUTATED    5  1
  C20ORF132 WILD-TYPE 94 55
  C20ORF132 MUTATED C20ORF132 WILD-TYPE 
                  6                 149 
  C20ORF132 MUTATED C20ORF132 WILD-TYPE 
                  1                  55 
$`C20ORF132 MUTATED`
TCGA-05-4396 TCGA-05-4432 TCGA-44-2657 TCGA-44-2659 TCGA-50-5049 TCGA-50-6597 
        9.96        25.02        13.15        44.94        70.55        33.37 

$`C20ORF132 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        26.01        25.02        24.00        15.02        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        4.96        28.96        22.03         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61        14.73 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       21.93        46.98        24.36        42.08        42.77         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        37.15        38.24        23.51         6.21        23.74 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       13.71        12.59        13.38        10.78         9.93        27.78 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
       11.90         5.42        12.16        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46         5.16 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       55.89        15.02        12.13        29.26        17.13        20.48 
TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       71.47        14.96        25.81        31.04        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12        18.64        29.00        25.12        22.55        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-55-1592 
        3.88        25.51        11.05        12.16         6.21        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
        0.79        56.81        20.65        39.09        37.02        87.98 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        2.04        42.90        28.41        51.25        28.44         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       20.02        18.84        14.04        12.66         5.69         4.60 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
       13.87         2.01        52.57        23.38        29.95        26.27 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 
       15.35         4.27         1.32         5.39         1.25        12.36 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       10.62        41.33        10.16         2.60        13.71 

  C20ORF132 MUTATED C20ORF132 WILD-TYPE 
               9.96                0.07 
  C20ORF132 MUTATED C20ORF132 WILD-TYPE 
              70.55              120.79 
  C20ORF132 MUTATED C20ORF132 WILD-TYPE 
             29.195              20.480 
[1] "10.0 - 70.5 (29.2)" "0.1 - 120.8 (20.5)"
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4389          TCGA-05-4390 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-05-4396          TCGA-05-4397          TCGA-05-4398 
  "C20ORF132 MUTATED" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-05-4402          TCGA-05-4403          TCGA-05-4405 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-05-4415          TCGA-05-4417          TCGA-05-4418 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-05-4420          TCGA-05-4422          TCGA-05-4424 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-05-4425          TCGA-05-4426          TCGA-05-4427 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-05-4430          TCGA-05-4432          TCGA-05-4433 
"C20ORF132 WILD-TYPE"   "C20ORF132 MUTATED" "C20ORF132 WILD-TYPE" 
         TCGA-05-4434          TCGA-05-5420          TCGA-05-5423 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-05-5425          TCGA-05-5428          TCGA-05-5429 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-05-5715          TCGA-35-3615          TCGA-35-4122 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-35-4123          TCGA-35-5375          TCGA-38-4625 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-38-4626          TCGA-38-4627          TCGA-38-4628 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-38-4629          TCGA-38-4630          TCGA-38-4631 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-38-4632          TCGA-38-6178          TCGA-44-2655 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-44-2656          TCGA-44-2657          TCGA-44-2659 
"C20ORF132 WILD-TYPE"   "C20ORF132 MUTATED"   "C20ORF132 MUTATED" 
         TCGA-44-2661          TCGA-44-2662          TCGA-44-2665 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-44-2666          TCGA-44-2668          TCGA-44-3396 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-44-3398          TCGA-44-3918          TCGA-44-3919 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-44-4112          TCGA-44-5643          TCGA-44-5645 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-44-6144          TCGA-44-6145          TCGA-44-6146 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-44-6147          TCGA-44-6148          TCGA-44-6774 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-44-6775          TCGA-44-6776          TCGA-44-6777 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-44-6778          TCGA-44-6779          TCGA-49-4486 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-49-4487          TCGA-49-4488          TCGA-49-4490 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-49-4494          TCGA-49-4501          TCGA-49-4505 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-49-4506          TCGA-49-4507          TCGA-49-4510 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-49-4512          TCGA-49-4514          TCGA-49-6742 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-49-6743          TCGA-49-6744          TCGA-49-6745 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-50-5044          TCGA-50-5045          TCGA-50-5049 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE"   "C20ORF132 MUTATED" 
         TCGA-50-5051          TCGA-50-5055          TCGA-50-5066 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-50-5068          TCGA-50-5072          TCGA-50-5930 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-50-5931          TCGA-50-5932          TCGA-50-5933 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-50-5935          TCGA-50-5936          TCGA-50-5939 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-50-5941          TCGA-50-5942          TCGA-50-5944 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-50-5946          TCGA-50-6590          TCGA-50-6591 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-50-6592          TCGA-50-6593          TCGA-50-6594 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-50-6595          TCGA-50-6597          TCGA-55-1592 
"C20ORF132 WILD-TYPE"   "C20ORF132 MUTATED" "C20ORF132 WILD-TYPE" 
         TCGA-55-1594          TCGA-55-1595          TCGA-55-1596 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-55-5899          TCGA-55-6543          TCGA-55-6642 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-55-6712          TCGA-64-1676          TCGA-64-1677 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-64-1678          TCGA-64-1680          TCGA-64-5774 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-64-5775          TCGA-64-5778          TCGA-64-5779 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-64-5781          TCGA-64-5815          TCGA-67-3770 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-67-3771          TCGA-67-3772          TCGA-67-3773 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-67-3774          TCGA-67-6215          TCGA-67-6216 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-67-6217          TCGA-71-6725          TCGA-73-4658 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-73-4659          TCGA-73-4662          TCGA-73-4666 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-73-4668          TCGA-73-4670          TCGA-73-4675 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-73-4676          TCGA-73-4677          TCGA-86-6562 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4389          TCGA-05-4390 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-05-4396          TCGA-05-4397          TCGA-05-4398 
  "C20ORF132 MUTATED" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-05-4402          TCGA-05-4403          TCGA-05-4405 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-05-4415          TCGA-05-4417          TCGA-05-4418 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-05-4420          TCGA-05-4422          TCGA-05-4424 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-05-4425          TCGA-05-4426          TCGA-05-4427 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-05-4430          TCGA-05-4432          TCGA-05-4433 
"C20ORF132 WILD-TYPE"   "C20ORF132 MUTATED" "C20ORF132 WILD-TYPE" 
         TCGA-05-4434          TCGA-05-5420          TCGA-05-5423 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-05-5425          TCGA-05-5428          TCGA-05-5429 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-05-5715          TCGA-35-3615          TCGA-35-4122 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-35-4123          TCGA-35-5375          TCGA-38-4625 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-38-4626          TCGA-38-4627          TCGA-38-4628 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-38-4629          TCGA-38-4630          TCGA-38-4631 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-38-4632          TCGA-38-6178          TCGA-44-2655 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-44-2656          TCGA-44-2657          TCGA-44-2659 
"C20ORF132 WILD-TYPE"   "C20ORF132 MUTATED"   "C20ORF132 MUTATED" 
         TCGA-44-2661          TCGA-44-2662          TCGA-44-2665 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-44-2666          TCGA-44-2668          TCGA-44-3396 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-44-3398          TCGA-44-3918          TCGA-44-3919 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-44-4112          TCGA-44-5643          TCGA-44-5645 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-44-6144          TCGA-44-6145          TCGA-44-6146 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-44-6147          TCGA-44-6148          TCGA-44-6774 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-44-6775          TCGA-44-6776          TCGA-44-6777 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-44-6778          TCGA-44-6779          TCGA-49-4486 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-49-4487          TCGA-49-4488          TCGA-49-4490 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-49-4494          TCGA-49-4501          TCGA-49-4505 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-49-4506          TCGA-49-4507          TCGA-49-4510 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-49-4512          TCGA-49-4514          TCGA-49-6742 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-49-6743          TCGA-49-6744          TCGA-49-6745 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-50-5044          TCGA-50-5045          TCGA-50-5049 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE"   "C20ORF132 MUTATED" 
         TCGA-50-5051          TCGA-50-5055          TCGA-50-5066 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-50-5068          TCGA-50-5072          TCGA-50-5930 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-50-5931          TCGA-50-5932          TCGA-50-5933 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-50-5935          TCGA-50-5936          TCGA-50-5939 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-50-5941          TCGA-50-5942          TCGA-50-5944 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-50-5946          TCGA-50-6590          TCGA-50-6591 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-50-6592          TCGA-50-6593          TCGA-50-6594 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-50-6595          TCGA-50-6597          TCGA-55-1592 
"C20ORF132 WILD-TYPE"   "C20ORF132 MUTATED" "C20ORF132 WILD-TYPE" 
         TCGA-55-1594          TCGA-55-1595          TCGA-55-1596 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-55-5899          TCGA-55-6543          TCGA-55-6642 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-55-6712          TCGA-64-1676          TCGA-64-1677 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-64-1678          TCGA-64-1680          TCGA-64-5774 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-64-5775          TCGA-64-5778          TCGA-64-5779 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-64-5781          TCGA-64-5815          TCGA-67-3770 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-67-3771          TCGA-67-3772          TCGA-67-3773 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-67-3774          TCGA-67-6215          TCGA-67-6216 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-67-6217          TCGA-71-6725          TCGA-73-4658 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-73-4659          TCGA-73-4662          TCGA-73-4666 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-73-4668          TCGA-73-4670          TCGA-73-4675 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-73-4676          TCGA-73-4677          TCGA-86-6562 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4389          TCGA-05-4390 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-05-4396          TCGA-05-4397          TCGA-05-4398 
  "C20ORF132 MUTATED" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-05-4402          TCGA-05-4403          TCGA-05-4405 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-05-4415          TCGA-05-4417          TCGA-05-4418 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-05-4420          TCGA-05-4422          TCGA-05-4424 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-05-4425          TCGA-05-4426          TCGA-05-4427 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-05-4430          TCGA-05-4432          TCGA-05-4433 
"C20ORF132 WILD-TYPE"   "C20ORF132 MUTATED" "C20ORF132 WILD-TYPE" 
         TCGA-05-4434          TCGA-05-5420          TCGA-05-5423 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-05-5425          TCGA-05-5428          TCGA-05-5429 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-05-5715          TCGA-35-3615          TCGA-35-4122 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-35-4123          TCGA-35-5375          TCGA-38-4625 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-38-4626          TCGA-38-4627          TCGA-38-4628 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-38-4629          TCGA-38-4630          TCGA-38-4631 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-38-4632          TCGA-38-6178          TCGA-44-2655 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-44-2656          TCGA-44-2657          TCGA-44-2659 
"C20ORF132 WILD-TYPE"   "C20ORF132 MUTATED"   "C20ORF132 MUTATED" 
         TCGA-44-2661          TCGA-44-2662          TCGA-44-2665 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-44-2666          TCGA-44-2668          TCGA-44-3396 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-44-3398          TCGA-44-3918          TCGA-44-3919 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-44-4112          TCGA-44-5643          TCGA-44-5645 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-44-6144          TCGA-44-6145          TCGA-44-6146 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-44-6147          TCGA-44-6148          TCGA-44-6774 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-44-6775          TCGA-44-6776          TCGA-44-6777 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-44-6778          TCGA-44-6779          TCGA-49-4486 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-49-4487          TCGA-49-4488          TCGA-49-4490 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-49-4494          TCGA-49-4501          TCGA-49-4505 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-49-4506          TCGA-49-4507          TCGA-49-4510 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-49-4512          TCGA-49-4514          TCGA-49-6742 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-49-6743          TCGA-49-6744          TCGA-49-6745 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-50-5044          TCGA-50-5045          TCGA-50-5049 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE"   "C20ORF132 MUTATED" 
         TCGA-50-5051          TCGA-50-5055          TCGA-50-5066 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-50-5068          TCGA-50-5072          TCGA-50-5930 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-50-5931          TCGA-50-5932          TCGA-50-5933 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-50-5935          TCGA-50-5936          TCGA-50-5939 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-50-5941          TCGA-50-5942          TCGA-50-5944 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-50-5946          TCGA-50-6590          TCGA-50-6591 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-50-6592          TCGA-50-6593          TCGA-50-6594 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-50-6595          TCGA-50-6597          TCGA-55-1592 
"C20ORF132 WILD-TYPE"   "C20ORF132 MUTATED" "C20ORF132 WILD-TYPE" 
         TCGA-55-1594          TCGA-55-1595          TCGA-55-1596 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-55-5899          TCGA-55-6543          TCGA-55-6642 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-55-6712          TCGA-64-1676          TCGA-64-1677 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-64-1678          TCGA-64-1680          TCGA-64-5774 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-64-5775          TCGA-64-5778          TCGA-64-5779 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-64-5781          TCGA-64-5815          TCGA-67-3770 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-67-3771          TCGA-67-3772          TCGA-67-3773 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-67-3774          TCGA-67-6215          TCGA-67-6216 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-67-6217          TCGA-71-6725          TCGA-73-4658 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-73-4659          TCGA-73-4662          TCGA-73-4666 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-73-4668          TCGA-73-4670          TCGA-73-4675 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-73-4676          TCGA-73-4677          TCGA-86-6562 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
[1] "hr=" "2.9"
D197V2, continuous
                     vv
clus                  STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  C20ORF132 MUTATED          1        3         0         3          0
  C20ORF132 WILD-TYPE       36       50        11        20         33
                     vv
clus                  STAGE IIIB STAGE IV
  C20ORF132 MUTATED            1        0
  C20ORF132 WILD-TYPE          5        9
D197V3, multiclass
                     vv
clus                   T1  T2  T3  T4
  C20ORF132 MUTATED     1   5   1   1
  C20ORF132 WILD-TYPE  40 104  13   7
D197V4, multiclass
    clus
vv   C20ORF132 MUTATED C20ORF132 WILD-TYPE
  T1                 1                  40
  T2                 5                 104
  T3                 1                  13
  T4                 1                   7
                     vv
clus                  N0 N1 N2+N3
  C20ORF132 MUTATED    4  3     0
  C20ORF132 WILD-TYPE 91 34    35
D197V5, multiclass
       clus
vv      C20ORF132 MUTATED C20ORF132 WILD-TYPE
  N0                    4                  91
  N1                    3                  34
  N2+N3                 0                  35
                     vv
clus                   M0  M1  MX
  C20ORF132 MUTATED     7   0   1
  C20ORF132 WILD-TYPE 136   9  17
D197V6, multiclass
    clus
vv   C20ORF132 MUTATED C20ORF132 WILD-TYPE
  M0                 7                 136
  M1                 0                   9
  MX                 1                  17
D197V7, binary
                     cls
clus                   0  1
  C20ORF132 MUTATED    4  4
  C20ORF132 WILD-TYPE 89 75
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  C20ORF132 MUTATED      4    4
  C20ORF132 WILD-TYPE   89   75
        clus
vv       C20ORF132 MUTATED C20ORF132 WILD-TYPE
  FEMALE                 4                  89
  MALE                   4                  75
D197V8, continuous
                     vv
clus                  LUNG ACINAR ADENOCARCINOMA
  C20ORF132 MUTATED                            0
  C20ORF132 WILD-TYPE                          2
                     vv
clus                  LUNG ADENOCARCINOMA MIXED SUBTYPE
  C20ORF132 MUTATED                                   3
  C20ORF132 WILD-TYPE                                36
                     vv
clus                  LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  C20ORF132 MUTATED                                                    5
  C20ORF132 WILD-TYPE                                                110
                     vv
clus                  LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  C20ORF132 MUTATED                                            0
  C20ORF132 WILD-TYPE                                          1
                     vv
clus                  LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  C20ORF132 MUTATED                                               0
  C20ORF132 WILD-TYPE                                             2
                     vv
clus                  LUNG CLEAR CELL ADENOCARCINOMA
  C20ORF132 MUTATED                                0
  C20ORF132 WILD-TYPE                              2
                     vv
clus                  LUNG MICROPAPILLARY ADENOCARCINOMA
  C20ORF132 MUTATED                                    0
  C20ORF132 WILD-TYPE                                  2
                     vv
clus                  LUNG MUCINOUS ADENOCARCINOMA
  C20ORF132 MUTATED                              0
  C20ORF132 WILD-TYPE                            2
                     vv
clus                  LUNG PAPILLARY ADENOCARCINOMA
  C20ORF132 MUTATED                               0
  C20ORF132 WILD-TYPE                             4
                     vv
clus                  LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  C20ORF132 MUTATED                                               0
  C20ORF132 WILD-TYPE                                             1
                     vv
clus                  MUCINOUS (COLLOID) CARCINOMA
  C20ORF132 MUTATED                              0
  C20ORF132 WILD-TYPE                            2
D197V9, multiclass
D197V10, binary
                     cls
clus                    0   1
  C20ORF132 MUTATED     1   7
  C20ORF132 WILD-TYPE  13 151
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  C20ORF132 MUTATED      1    7
  C20ORF132 WILD-TYPE   13  151
     clus
vv    C20ORF132 MUTATED C20ORF132 WILD-TYPE
  NO                  1                  13
  YES                 7                 151
D197V11, continuous
D197V12, continuous
                     vv
clus                   R0  R1  R2  RX
  C20ORF132 MUTATED     6   0   0   1
  C20ORF132 WILD-TYPE 109   6   4   8
D197V13, multiclass
    clus
vv   C20ORF132 MUTATED C20ORF132 WILD-TYPE
  R0                 6                 109
  R1                 0                   6
  R2                 0                   4
  RX                 1                   8

Clustering(198) Variable = EIF4G3 MUTATION ANALYSIS
D198V1, survival
                  sevent
clus2               0  1
  EIF4G3 MUTATED    3  1
  EIF4G3 WILD-TYPE 96 55
  EIF4G3 MUTATED EIF4G3 WILD-TYPE 
               4              151 
  EIF4G3 MUTATED EIF4G3 WILD-TYPE 
               1               55 
$`EIF4G3 MUTATED`
TCGA-05-4382 TCGA-05-4396 TCGA-44-2655 TCGA-44-3398 
       19.92         9.96        21.93        38.24 

$`EIF4G3 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4397 
       50.07         3.98        14.01        45.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        4.96        28.96        22.03         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61        14.73 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       46.98        13.15        44.94        24.36        42.08        42.77 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        3.19         8.09        37.15        23.51         6.21        23.74 
TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       13.71        12.59        13.38        10.78         9.93        27.78 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
       11.90         5.42        12.16        63.72        32.45        36.49 
TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       16.41        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46         5.16 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       55.89        15.02        12.13        29.26        17.13        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        70.55        14.96        25.81        31.04        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12        18.64        29.00        25.12        22.55 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       33.37        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
        0.07        32.61         0.79        56.81        20.65        39.09 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        87.98         2.04        42.90        28.41        51.25 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       28.44         0.99        20.02        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        5.69         4.60        13.87         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        26.27        15.35         4.27         1.32         5.39 
TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        1.25        12.36        10.62        41.33        10.16         2.60 
TCGA-91-6836 
       13.71 

  EIF4G3 MUTATED EIF4G3 WILD-TYPE 
            9.96             0.07 
  EIF4G3 MUTATED EIF4G3 WILD-TYPE 
           38.24           120.79 
  EIF4G3 MUTATED EIF4G3 WILD-TYPE 
          20.925           20.650 
[1] "10.0 - 38.2 (20.9)" "0.1 - 120.8 (20.6)"
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE"   "EIF4G3 MUTATED" "EIF4G3 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE"   "EIF4G3 MUTATED" "EIF4G3 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
  "EIF4G3 MUTATED" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE"   "EIF4G3 MUTATED" "EIF4G3 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE"   "EIF4G3 MUTATED" "EIF4G3 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE"   "EIF4G3 MUTATED" "EIF4G3 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
  "EIF4G3 MUTATED" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE"   "EIF4G3 MUTATED" "EIF4G3 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-05-4249       TCGA-05-4250       TCGA-05-4382       TCGA-05-4384 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE"   "EIF4G3 MUTATED" "EIF4G3 WILD-TYPE" 
      TCGA-05-4389       TCGA-05-4390       TCGA-05-4396       TCGA-05-4397 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE"   "EIF4G3 MUTATED" "EIF4G3 WILD-TYPE" 
      TCGA-05-4398       TCGA-05-4402       TCGA-05-4403       TCGA-05-4405 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4418       TCGA-05-4420 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-05-4422       TCGA-05-4424       TCGA-05-4425       TCGA-05-4426 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4430       TCGA-05-4432       TCGA-05-4433 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-05-4434       TCGA-05-5420       TCGA-05-5423       TCGA-05-5425 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-05-5428       TCGA-05-5429       TCGA-05-5715       TCGA-35-3615 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-35-5375       TCGA-38-4625 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-38-4626       TCGA-38-4627       TCGA-38-4628       TCGA-38-4629 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-38-4630       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-44-2655       TCGA-44-2656       TCGA-44-2657       TCGA-44-2659 
  "EIF4G3 MUTATED" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-44-2661       TCGA-44-2662       TCGA-44-2665       TCGA-44-2666 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3396       TCGA-44-3398       TCGA-44-3918 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE"   "EIF4G3 MUTATED" "EIF4G3 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4486 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4494 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-49-4501       TCGA-49-4505       TCGA-49-4506       TCGA-49-4507 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-49-4510       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-50-5044 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-55-1596       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-64-1680       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-3770 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-67-3771       TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4659       TCGA-73-4662       TCGA-73-4666 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-73-4668       TCGA-73-4670       TCGA-73-4675       TCGA-73-4676 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-73-4677       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
[1] "hr=" "1.2"
D198V2, continuous
                  vv
clus               STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  EIF4G3 MUTATED          2        2         0         0          1          1
  EIF4G3 WILD-TYPE       35       51        11        23         32          5
                  vv
clus               STAGE IV
  EIF4G3 MUTATED          0
  EIF4G3 WILD-TYPE        9
D198V3, multiclass
                  vv
clus                T1  T2  T3  T4
  EIF4G3 MUTATED     2   2   1   1
  EIF4G3 WILD-TYPE  39 107  13   7
D198V4, multiclass
    clus
vv   EIF4G3 MUTATED EIF4G3 WILD-TYPE
  T1              2               39
  T2              2              107
  T3              1               13
  T4              1                7
                  vv
clus               N0 N1 N2+N3
  EIF4G3 MUTATED    4  1     1
  EIF4G3 WILD-TYPE 91 36    34
D198V5, multiclass
       clus
vv      EIF4G3 MUTATED EIF4G3 WILD-TYPE
  N0                 4               91
  N1                 1               36
  N2+N3              1               34
                  vv
clus                M0  M1  MX
  EIF4G3 MUTATED     6   0   0
  EIF4G3 WILD-TYPE 137   9  18
D198V6, multiclass
    clus
vv   EIF4G3 MUTATED EIF4G3 WILD-TYPE
  M0              6              137
  M1              0                9
  MX              0               18
D198V7, binary
                  cls
clus                0  1
  EIF4G3 MUTATED    3  3
  EIF4G3 WILD-TYPE 90 76
[1] "tbl2"
                  cls
clus               [,1] [,2]
  EIF4G3 MUTATED      3    3
  EIF4G3 WILD-TYPE   90   76
        clus
vv       EIF4G3 MUTATED EIF4G3 WILD-TYPE
  FEMALE              3               90
  MALE                3               76
D198V8, continuous
                  vv
clus               LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  EIF4G3 MUTATED                            0                                 2
  EIF4G3 WILD-TYPE                          2                                37
                  vv
clus               LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  EIF4G3 MUTATED                                                    3
  EIF4G3 WILD-TYPE                                                112
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  EIF4G3 MUTATED                                            0
  EIF4G3 WILD-TYPE                                          1
                  vv
clus               LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  EIF4G3 MUTATED                                               0
  EIF4G3 WILD-TYPE                                             2
                  vv
clus               LUNG CLEAR CELL ADENOCARCINOMA
  EIF4G3 MUTATED                                0
  EIF4G3 WILD-TYPE                              2
                  vv
clus               LUNG MICROPAPILLARY ADENOCARCINOMA
  EIF4G3 MUTATED                                    0
  EIF4G3 WILD-TYPE                                  2
                  vv
clus               LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  EIF4G3 MUTATED                              0                             1
  EIF4G3 WILD-TYPE                            2                             3
                  vv
clus               LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  EIF4G3 MUTATED                                               0
  EIF4G3 WILD-TYPE                                             1
                  vv
clus               MUCINOUS (COLLOID) CARCINOMA
  EIF4G3 MUTATED                              0
  EIF4G3 WILD-TYPE                            2
D198V9, multiclass
D198V10, binary
                  cls
clus                 0   1
  EIF4G3 MUTATED     0   6
  EIF4G3 WILD-TYPE  14 152
[1] "tbl2"
                  cls
clus               [,1] [,2]
  EIF4G3 MUTATED      0    6
  EIF4G3 WILD-TYPE   14  152
     clus
vv    EIF4G3 MUTATED EIF4G3 WILD-TYPE
  NO               0               14
  YES              6              152
D198V11, continuous
D198V12, continuous
                  vv
clus                R0  R1  R2  RX
  EIF4G3 MUTATED     5   0   1   0
  EIF4G3 WILD-TYPE 110   6   3   9
D198V13, multiclass
    clus
vv   EIF4G3 MUTATED EIF4G3 WILD-TYPE
  R0              5              110
  R1              0                6
  R2              1                3
  RX              0                9

Clustering(199) Variable = PLCB1 MUTATION ANALYSIS
D199V1, survival
                 sevent
clus2              0  1
  PLCB1 MUTATED    8  4
  PLCB1 WILD-TYPE 91 52
  PLCB1 MUTATED PLCB1 WILD-TYPE 
             12             143 
  PLCB1 MUTATED PLCB1 WILD-TYPE 
              4              52 
$`PLCB1 MUTATED`
TCGA-05-4397 TCGA-05-4405 TCGA-05-4417 TCGA-44-2655 TCGA-44-2656 TCGA-44-4112 
       24.03        20.05        14.93        21.93        46.98        23.74 
TCGA-49-6744 TCGA-50-6590 TCGA-64-5779 TCGA-67-3771 TCGA-73-4658 TCGA-91-6828 
       29.26        42.31        28.41        20.02        52.57        10.62 

$`PLCB1 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4415 TCGA-05-4418 
        9.96        47.05         8.02        19.00         2.96         8.98 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
       29.95        12.00        30.02        21.99        26.01        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02        15.02         4.96 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
       28.96        22.03         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        97.74       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2657 
       28.37        35.28        11.64        44.61        14.73        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       44.94        24.36        42.08        42.77         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-5643 TCGA-44-5645 
       37.15        38.24        23.51         6.21        13.71        12.59 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
       13.38        10.78         9.93        27.78        11.90         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 
       12.16        63.72        32.45        36.49        16.41        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46         5.16        55.89        15.02 
TCGA-49-6743 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       12.13        17.13        20.48        71.47        70.55        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81        31.04        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12        18.64 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       29.00        25.12        22.55         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       12.16         6.21        33.37        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-64-1676 
       45.17         2.86         0.07        32.61         0.79        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        87.98         2.04        42.90 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       51.25        28.44         0.99        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4659 TCGA-73-4662 
        5.69         4.60        13.87         2.01        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       26.27        15.35         4.27         1.32         5.39         1.25 
TCGA-86-6562 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       12.36        41.33        10.16         2.60        13.71 

  PLCB1 MUTATED PLCB1 WILD-TYPE 
          10.62            0.07 
  PLCB1 MUTATED PLCB1 WILD-TYPE 
          52.57          120.79 
  PLCB1 MUTATED PLCB1 WILD-TYPE 
         23.885          19.920 
[1] "10.6 - 52.6 (23.9)" "0.1 - 120.8 (19.9)"
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE"   "PLCB1 MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE"   "PLCB1 MUTATED" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"PLCB1 WILD-TYPE"   "PLCB1 MUTATED" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
  "PLCB1 MUTATED"   "PLCB1 MUTATED" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"PLCB1 WILD-TYPE"   "PLCB1 MUTATED" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"PLCB1 WILD-TYPE"   "PLCB1 MUTATED" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE"   "PLCB1 MUTATED" "PLCB1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
  "PLCB1 MUTATED" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "PLCB1 MUTATED" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
  "PLCB1 MUTATED" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE"   "PLCB1 MUTATED" "PLCB1 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE"   "PLCB1 MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE"   "PLCB1 MUTATED" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"PLCB1 WILD-TYPE"   "PLCB1 MUTATED" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
  "PLCB1 MUTATED"   "PLCB1 MUTATED" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"PLCB1 WILD-TYPE"   "PLCB1 MUTATED" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"PLCB1 WILD-TYPE"   "PLCB1 MUTATED" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE"   "PLCB1 MUTATED" "PLCB1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
  "PLCB1 MUTATED" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "PLCB1 MUTATED" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
  "PLCB1 MUTATED" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE"   "PLCB1 MUTATED" "PLCB1 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-05-4249      TCGA-05-4250      TCGA-05-4382      TCGA-05-4384 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-05-4389      TCGA-05-4390      TCGA-05-4396      TCGA-05-4397 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE"   "PLCB1 MUTATED" 
     TCGA-05-4398      TCGA-05-4402      TCGA-05-4403      TCGA-05-4405 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE"   "PLCB1 MUTATED" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"PLCB1 WILD-TYPE"   "PLCB1 MUTATED" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4424      TCGA-05-4425      TCGA-05-4426 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4430      TCGA-05-4432      TCGA-05-4433 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-05-5428      TCGA-05-5429      TCGA-05-5715      TCGA-35-3615 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-35-5375      TCGA-38-4625 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-38-4626      TCGA-38-4627      TCGA-38-4628      TCGA-38-4629 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-38-4630      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-44-2655      TCGA-44-2656      TCGA-44-2657      TCGA-44-2659 
  "PLCB1 MUTATED"   "PLCB1 MUTATED" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2662      TCGA-44-2665      TCGA-44-2666 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3396      TCGA-44-3398      TCGA-44-3918 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"PLCB1 WILD-TYPE"   "PLCB1 MUTATED" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4486 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4494 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-49-4501      TCGA-49-4505      TCGA-49-4506      TCGA-49-4507 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-49-4510      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-50-5044 
"PLCB1 WILD-TYPE"   "PLCB1 MUTATED" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE"   "PLCB1 MUTATED" "PLCB1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-64-1680      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-3770 
  "PLCB1 MUTATED" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
  "PLCB1 MUTATED" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4659      TCGA-73-4662      TCGA-73-4666 
  "PLCB1 MUTATED" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-73-4668      TCGA-73-4670      TCGA-73-4675      TCGA-73-4676 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
     TCGA-73-4677      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE"   "PLCB1 MUTATED" "PLCB1 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" "PLCB1 WILD-TYPE" 
[1] "hr=" "1.3"
D199V2, continuous
                 vv
clus              STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA STAGE IIIB
  PLCB1 MUTATED          3        6         1         1          1          0
  PLCB1 WILD-TYPE       34       47        10        22         32          6
                 vv
clus              STAGE IV
  PLCB1 MUTATED          0
  PLCB1 WILD-TYPE        9
D199V3, multiclass
                 vv
clus               T1  T2  T3  T4
  PLCB1 MUTATED     3   9   0   0
  PLCB1 WILD-TYPE  38 100  14   8
D199V4, multiclass
    clus
vv   PLCB1 MUTATED PLCB1 WILD-TYPE
  T1             3              38
  T2             9             100
  T3             0              14
  T4             0               8
                 vv
clus              N0 N1 N2+N3
  PLCB1 MUTATED    9  2     1
  PLCB1 WILD-TYPE 86 35    34
D199V5, multiclass
       clus
vv      PLCB1 MUTATED PLCB1 WILD-TYPE
  N0                9              86
  N1                2              35
  N2+N3             1              34
                 vv
clus               M0  M1  MX
  PLCB1 MUTATED    11   0   1
  PLCB1 WILD-TYPE 132   9  17
D199V6, multiclass
    clus
vv   PLCB1 MUTATED PLCB1 WILD-TYPE
  M0            11             132
  M1             0               9
  MX             1              17
D199V7, binary
                 cls
clus               0  1
  PLCB1 MUTATED    8  4
  PLCB1 WILD-TYPE 85 75
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PLCB1 MUTATED      8    4
  PLCB1 WILD-TYPE   85   75
        clus
vv       PLCB1 MUTATED PLCB1 WILD-TYPE
  FEMALE             8              85
  MALE               4              75
D199V8, continuous
                 vv
clus              LUNG ACINAR ADENOCARCINOMA LUNG ADENOCARCINOMA MIXED SUBTYPE
  PLCB1 MUTATED                            1                                 4
  PLCB1 WILD-TYPE                          1                                35
                 vv
clus              LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  PLCB1 MUTATED                                                    7
  PLCB1 WILD-TYPE                                                108
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  PLCB1 MUTATED                                            0
  PLCB1 WILD-TYPE                                          1
                 vv
clus              LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  PLCB1 MUTATED                                               0
  PLCB1 WILD-TYPE                                             2
                 vv
clus              LUNG CLEAR CELL ADENOCARCINOMA
  PLCB1 MUTATED                                0
  PLCB1 WILD-TYPE                              2
                 vv
clus              LUNG MICROPAPILLARY ADENOCARCINOMA
  PLCB1 MUTATED                                    0
  PLCB1 WILD-TYPE                                  2
                 vv
clus              LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  PLCB1 MUTATED                              0                             0
  PLCB1 WILD-TYPE                            2                             4
                 vv
clus              LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  PLCB1 MUTATED                                               0
  PLCB1 WILD-TYPE                                             1
                 vv
clus              MUCINOUS (COLLOID) CARCINOMA
  PLCB1 MUTATED                              0
  PLCB1 WILD-TYPE                            2
D199V9, multiclass
D199V10, binary
                 cls
clus                0   1
  PLCB1 MUTATED     1  11
  PLCB1 WILD-TYPE  13 147
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PLCB1 MUTATED      1   11
  PLCB1 WILD-TYPE   13  147
     clus
vv    PLCB1 MUTATED PLCB1 WILD-TYPE
  NO              1              13
  YES            11             147
D199V11, continuous
D199V12, continuous
                 vv
clus               R0  R1  R2  RX
  PLCB1 MUTATED    10   0   0   0
  PLCB1 WILD-TYPE 105   6   4   9
D199V13, multiclass
    clus
vv   PLCB1 MUTATED PLCB1 WILD-TYPE
  R0            10             105
  R1             0               6
  R2             0               4
  RX             0               9

Clustering(200) Variable = KRTAP19-6 MUTATION ANALYSIS
D200V1, survival
                     sevent
clus2                  0  1
  KRTAP19-6 MUTATED    3  0
  KRTAP19-6 WILD-TYPE 96 56
  KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE 
                  3                 152 
  KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE 
                  0                  56 
$`KRTAP19-6 MUTATED`
TCGA-44-2659 TCGA-64-1676 TCGA-64-5778 
       44.94        56.81        42.90 

$`KRTAP19-6 WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       21.99        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 
       15.02        15.02         4.96        28.96        22.03         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        97.74 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
      120.79        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 
       44.61        14.73        21.93        46.98        13.15        24.36 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       42.08        42.77         3.19         8.09        37.15        38.24 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
       23.51         6.21        23.74        13.71        12.59        13.38 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
       10.78         9.93        27.78        11.90         5.42        12.16 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-49-4486 TCGA-49-4487 
       63.72        32.45        36.49        16.41        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46         5.16        55.89        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       29.26        17.13        20.48        71.47        70.55        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81        31.04        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12        18.64 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
       29.00        25.12        22.55        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        33.37        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 
       20.65        39.09        37.02        87.98         2.04        28.41 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       51.25        28.44         0.99        20.02        18.84        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-71-6725 TCGA-73-4658 
       12.66         5.69         4.60        13.87         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        26.27        15.35         4.27         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-86-6562 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 
        5.39         1.25        12.36        10.62        41.33        10.16 
TCGA-91-6835 TCGA-91-6836 
        2.60        13.71 

  KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE 
              42.90                0.07 
  KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE 
              56.81              120.79 
  KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE 
             44.940              20.265 
[1] "42.9 - 56.8 (44.9)" "0.1 - 120.8 (20.3)"
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4389          TCGA-05-4390 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4396          TCGA-05-4397          TCGA-05-4398 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4402          TCGA-05-4403          TCGA-05-4405 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4415          TCGA-05-4417          TCGA-05-4418 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4420          TCGA-05-4422          TCGA-05-4424 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4425          TCGA-05-4426          TCGA-05-4427 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4430          TCGA-05-4432          TCGA-05-4433 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4434          TCGA-05-5420          TCGA-05-5423 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-5425          TCGA-05-5428          TCGA-05-5429 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-5715          TCGA-35-3615          TCGA-35-4122 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-35-4123          TCGA-35-5375          TCGA-38-4625 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-38-4626          TCGA-38-4627          TCGA-38-4628 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-38-4629          TCGA-38-4630          TCGA-38-4631 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-38-4632          TCGA-38-6178          TCGA-44-2655 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-2656          TCGA-44-2657          TCGA-44-2659 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE"   "KRTAP19-6 MUTATED" 
         TCGA-44-2661          TCGA-44-2662          TCGA-44-2665 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-2666          TCGA-44-2668          TCGA-44-3396 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-3398          TCGA-44-3918          TCGA-44-3919 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-4112          TCGA-44-5643          TCGA-44-5645 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-6144          TCGA-44-6145          TCGA-44-6146 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-6147          TCGA-44-6148          TCGA-44-6774 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-6775          TCGA-44-6776          TCGA-44-6777 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-6778          TCGA-44-6779          TCGA-49-4486 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4487          TCGA-49-4488          TCGA-49-4490 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4494          TCGA-49-4501          TCGA-49-4505 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4506          TCGA-49-4507          TCGA-49-4510 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4512          TCGA-49-4514          TCGA-49-6742 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-6743          TCGA-49-6744          TCGA-49-6745 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5044          TCGA-50-5045          TCGA-50-5049 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5051          TCGA-50-5055          TCGA-50-5066 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5068          TCGA-50-5072          TCGA-50-5930 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5931          TCGA-50-5932          TCGA-50-5933 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5935          TCGA-50-5936          TCGA-50-5939 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5941          TCGA-50-5942          TCGA-50-5944 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5946          TCGA-50-6590          TCGA-50-6591 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-6592          TCGA-50-6593          TCGA-50-6594 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-6595          TCGA-50-6597          TCGA-55-1592 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-55-1594          TCGA-55-1595          TCGA-55-1596 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-55-5899          TCGA-55-6543          TCGA-55-6642 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-55-6712          TCGA-64-1676          TCGA-64-1677 
"KRTAP19-6 WILD-TYPE"   "KRTAP19-6 MUTATED" "KRTAP19-6 WILD-TYPE" 
         TCGA-64-1678          TCGA-64-1680          TCGA-64-5774 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-64-5775          TCGA-64-5778          TCGA-64-5779 
"KRTAP19-6 WILD-TYPE"   "KRTAP19-6 MUTATED" "KRTAP19-6 WILD-TYPE" 
         TCGA-64-5781          TCGA-64-5815          TCGA-67-3770 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-67-3771          TCGA-67-3772          TCGA-67-3773 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-67-3774          TCGA-67-6215          TCGA-67-6216 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-67-6217          TCGA-71-6725          TCGA-73-4658 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-73-4659          TCGA-73-4662          TCGA-73-4666 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-73-4668          TCGA-73-4670          TCGA-73-4675 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-73-4676          TCGA-73-4677          TCGA-86-6562 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4389          TCGA-05-4390 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4396          TCGA-05-4397          TCGA-05-4398 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4402          TCGA-05-4403          TCGA-05-4405 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4415          TCGA-05-4417          TCGA-05-4418 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4420          TCGA-05-4422          TCGA-05-4424 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4425          TCGA-05-4426          TCGA-05-4427 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4430          TCGA-05-4432          TCGA-05-4433 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4434          TCGA-05-5420          TCGA-05-5423 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-5425          TCGA-05-5428          TCGA-05-5429 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-5715          TCGA-35-3615          TCGA-35-4122 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-35-4123          TCGA-35-5375          TCGA-38-4625 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-38-4626          TCGA-38-4627          TCGA-38-4628 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-38-4629          TCGA-38-4630          TCGA-38-4631 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-38-4632          TCGA-38-6178          TCGA-44-2655 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-2656          TCGA-44-2657          TCGA-44-2659 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE"   "KRTAP19-6 MUTATED" 
         TCGA-44-2661          TCGA-44-2662          TCGA-44-2665 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-2666          TCGA-44-2668          TCGA-44-3396 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-3398          TCGA-44-3918          TCGA-44-3919 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-4112          TCGA-44-5643          TCGA-44-5645 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-6144          TCGA-44-6145          TCGA-44-6146 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-6147          TCGA-44-6148          TCGA-44-6774 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-6775          TCGA-44-6776          TCGA-44-6777 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-6778          TCGA-44-6779          TCGA-49-4486 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4487          TCGA-49-4488          TCGA-49-4490 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4494          TCGA-49-4501          TCGA-49-4505 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4506          TCGA-49-4507          TCGA-49-4510 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4512          TCGA-49-4514          TCGA-49-6742 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-6743          TCGA-49-6744          TCGA-49-6745 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5044          TCGA-50-5045          TCGA-50-5049 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5051          TCGA-50-5055          TCGA-50-5066 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5068          TCGA-50-5072          TCGA-50-5930 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5931          TCGA-50-5932          TCGA-50-5933 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5935          TCGA-50-5936          TCGA-50-5939 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5941          TCGA-50-5942          TCGA-50-5944 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5946          TCGA-50-6590          TCGA-50-6591 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-6592          TCGA-50-6593          TCGA-50-6594 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-6595          TCGA-50-6597          TCGA-55-1592 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-55-1594          TCGA-55-1595          TCGA-55-1596 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-55-5899          TCGA-55-6543          TCGA-55-6642 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-55-6712          TCGA-64-1676          TCGA-64-1677 
"KRTAP19-6 WILD-TYPE"   "KRTAP19-6 MUTATED" "KRTAP19-6 WILD-TYPE" 
         TCGA-64-1678          TCGA-64-1680          TCGA-64-5774 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-64-5775          TCGA-64-5778          TCGA-64-5779 
"KRTAP19-6 WILD-TYPE"   "KRTAP19-6 MUTATED" "KRTAP19-6 WILD-TYPE" 
         TCGA-64-5781          TCGA-64-5815          TCGA-67-3770 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-67-3771          TCGA-67-3772          TCGA-67-3773 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-67-3774          TCGA-67-6215          TCGA-67-6216 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-67-6217          TCGA-71-6725          TCGA-73-4658 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-73-4659          TCGA-73-4662          TCGA-73-4666 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-73-4668          TCGA-73-4670          TCGA-73-4675 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-73-4676          TCGA-73-4677          TCGA-86-6562 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4249          TCGA-05-4250          TCGA-05-4382 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4384          TCGA-05-4389          TCGA-05-4390 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4396          TCGA-05-4397          TCGA-05-4398 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4402          TCGA-05-4403          TCGA-05-4405 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4415          TCGA-05-4417          TCGA-05-4418 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4420          TCGA-05-4422          TCGA-05-4424 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4425          TCGA-05-4426          TCGA-05-4427 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4430          TCGA-05-4432          TCGA-05-4433 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4434          TCGA-05-5420          TCGA-05-5423 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-5425          TCGA-05-5428          TCGA-05-5429 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-5715          TCGA-35-3615          TCGA-35-4122 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-35-4123          TCGA-35-5375          TCGA-38-4625 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-38-4626          TCGA-38-4627          TCGA-38-4628 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-38-4629          TCGA-38-4630          TCGA-38-4631 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-38-4632          TCGA-38-6178          TCGA-44-2655 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-2656          TCGA-44-2657          TCGA-44-2659 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE"   "KRTAP19-6 MUTATED" 
         TCGA-44-2661          TCGA-44-2662          TCGA-44-2665 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-2666          TCGA-44-2668          TCGA-44-3396 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-3398          TCGA-44-3918          TCGA-44-3919 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-4112          TCGA-44-5643          TCGA-44-5645 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-6144          TCGA-44-6145          TCGA-44-6146 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-6147          TCGA-44-6148          TCGA-44-6774 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-6775          TCGA-44-6776          TCGA-44-6777 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-6778          TCGA-44-6779          TCGA-49-4486 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4487          TCGA-49-4488          TCGA-49-4490 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4494          TCGA-49-4501          TCGA-49-4505 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4506          TCGA-49-4507          TCGA-49-4510 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4512          TCGA-49-4514          TCGA-49-6742 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-6743          TCGA-49-6744          TCGA-49-6745 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5044          TCGA-50-5045          TCGA-50-5049 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5051          TCGA-50-5055          TCGA-50-5066 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5068          TCGA-50-5072          TCGA-50-5930 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5931          TCGA-50-5932          TCGA-50-5933 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5935          TCGA-50-5936          TCGA-50-5939 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5941          TCGA-50-5942          TCGA-50-5944 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5946          TCGA-50-6590          TCGA-50-6591 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-6592          TCGA-50-6593          TCGA-50-6594 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-6595          TCGA-50-6597          TCGA-55-1592 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-55-1594          TCGA-55-1595          TCGA-55-1596 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-55-5899          TCGA-55-6543          TCGA-55-6642 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-55-6712          TCGA-64-1676          TCGA-64-1677 
"KRTAP19-6 WILD-TYPE"   "KRTAP19-6 MUTATED" "KRTAP19-6 WILD-TYPE" 
         TCGA-64-1678          TCGA-64-1680          TCGA-64-5774 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-64-5775          TCGA-64-5778          TCGA-64-5779 
"KRTAP19-6 WILD-TYPE"   "KRTAP19-6 MUTATED" "KRTAP19-6 WILD-TYPE" 
         TCGA-64-5781          TCGA-64-5815          TCGA-67-3770 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-67-3771          TCGA-67-3772          TCGA-67-3773 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-67-3774          TCGA-67-6215          TCGA-67-6216 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-67-6217          TCGA-71-6725          TCGA-73-4658 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-73-4659          TCGA-73-4662          TCGA-73-4666 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-73-4668          TCGA-73-4670          TCGA-73-4675 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-73-4676          TCGA-73-4677          TCGA-86-6562 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-91-6828          TCGA-91-6829          TCGA-91-6831 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-91-6835          TCGA-91-6836 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D200V2, continuous
                     vv
clus                  STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  KRTAP19-6 MUTATED          1        2         0         1          0
  KRTAP19-6 WILD-TYPE       36       51        11        22         33
                     vv
clus                  STAGE IIIB STAGE IV
  KRTAP19-6 MUTATED            0        0
  KRTAP19-6 WILD-TYPE          6        9
D200V3, multiclass
                     vv
clus                   T1  T2  T3  T4
  KRTAP19-6 MUTATED     2   2   0   0
  KRTAP19-6 WILD-TYPE  39 107  14   8
D200V4, multiclass
    clus
vv   KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE
  T1                 2                  39
  T2                 2                 107
  T3                 0                  14
  T4                 0                   8
                     vv
clus                  N0 N1 N2+N3
  KRTAP19-6 MUTATED    3  1     0
  KRTAP19-6 WILD-TYPE 92 36    35
D200V5, multiclass
       clus
vv      KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE
  N0                    3                  92
  N1                    1                  36
  N2+N3                 0                  35
                     vv
clus                   M0  M1  MX
  KRTAP19-6 MUTATED     4   0   0
  KRTAP19-6 WILD-TYPE 139   9  18
D200V6, multiclass
    clus
vv   KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE
  M0                 4                 139
  M1                 0                   9
  MX                 0                  18
D200V7, binary
                     cls
clus                   0  1
  KRTAP19-6 MUTATED    1  3
  KRTAP19-6 WILD-TYPE 92 76
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  KRTAP19-6 MUTATED      1    3
  KRTAP19-6 WILD-TYPE   92   76
        clus
vv       KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE
  FEMALE                 1                  92
  MALE                   3                  76
D200V8, continuous
[1] "Remove cluster labels:" "KRTAP19-6 MUTATED"     
clus
  KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE 
                  1                  11 
         TCGA-35-4122          TCGA-35-4123          TCGA-35-5375 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-64-1677          TCGA-71-6725          TCGA-73-4659 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-73-4662          TCGA-73-4666          TCGA-73-4668 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-73-4676          TCGA-75-5122 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
                     vv
clus                  LUNG ACINAR ADENOCARCINOMA
  KRTAP19-6 MUTATED                            0
  KRTAP19-6 WILD-TYPE                          2
                     vv
clus                  LUNG ADENOCARCINOMA MIXED SUBTYPE
  KRTAP19-6 MUTATED                                   1
  KRTAP19-6 WILD-TYPE                                38
                     vv
clus                  LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  KRTAP19-6 MUTATED                                                    2
  KRTAP19-6 WILD-TYPE                                                113
                     vv
clus                  LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  KRTAP19-6 MUTATED                                            0
  KRTAP19-6 WILD-TYPE                                          1
                     vv
clus                  LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  KRTAP19-6 MUTATED                                               1
  KRTAP19-6 WILD-TYPE                                             1
                     vv
clus                  LUNG CLEAR CELL ADENOCARCINOMA
  KRTAP19-6 MUTATED                                0
  KRTAP19-6 WILD-TYPE                              2
                     vv
clus                  LUNG MICROPAPILLARY ADENOCARCINOMA
  KRTAP19-6 MUTATED                                    0
  KRTAP19-6 WILD-TYPE                                  2
                     vv
clus                  LUNG MUCINOUS ADENOCARCINOMA
  KRTAP19-6 MUTATED                              0
  KRTAP19-6 WILD-TYPE                            2
                     vv
clus                  LUNG PAPILLARY ADENOCARCINOMA
  KRTAP19-6 MUTATED                               0
  KRTAP19-6 WILD-TYPE                             4
                     vv
clus                  LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  KRTAP19-6 MUTATED                                               0
  KRTAP19-6 WILD-TYPE                                             1
                     vv
clus                  MUCINOUS (COLLOID) CARCINOMA
  KRTAP19-6 MUTATED                              0
  KRTAP19-6 WILD-TYPE                            2
D200V9, multiclass
D200V10, binary
                     cls
clus                    0   1
  KRTAP19-6 MUTATED     0   4
  KRTAP19-6 WILD-TYPE  14 154
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  KRTAP19-6 MUTATED      0    4
  KRTAP19-6 WILD-TYPE   14  154
     clus
vv    KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE
  NO                  0                  14
  YES                 4                 154
D200V11, continuous
D200V12, continuous
                     vv
clus                   R0  R1  R2  RX
  KRTAP19-6 MUTATED     3   0   0   1
  KRTAP19-6 WILD-TYPE 112   6   4   8
D200V13, multiclass
    clus
vv   KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE
  R0                 3                 112
  R1                 0                   6
  R2                 0                   4
  RX                 1                   8
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
                 "NEOPLASM.DISEASESTAGE" 
                                      V4 
                     "PATHOLOGY.T.STAGE" 
                                      V5 
                     "PATHOLOGY.N.STAGE" 
                                      V6 
                     "PATHOLOGY.M.STAGE" 
                                      V7 
                                "GENDER" 
                                      V8 
           "KARNOFSKY.PERFORMANCE.SCORE" 
                                      V9 
                     "HISTOLOGICAL.TYPE" 
                                     V10 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
                                     V11 
                 "NUMBERPACKYEARSSMOKED" 
                                     V12 
             "YEAROFTOBACCOSMOKINGONSET" 
                                     V13 
             "COMPLETENESS.OF.RESECTION" 
> q(save="no")
