
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_mutation_onlysig.3.4048/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_mutation_onlysig.3.4048/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/480280/LUAD-TP.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering_new/LUAD-TP/4469912/LUAD-TP.transferedmergedcluster.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=0.25", "-MF=ONLYSIG", "-oT=LUAD-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=LUAD-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=498, in cluster file=229, common to both=172
[1] "Reduce the number of clustering variables from 209 to 200."
[1] 200 172
[1] "CDKN2A MUTATION ANALYSIS"
[1] 3
  CDKN2A MUTATED CDKN2A WILD-TYPE 
               8              164 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
               8              164 
[1] "KRAS MUTATION ANALYSIS"
[1] 3
  KRAS MUTATED KRAS WILD-TYPE 
            47            125 
  KRAS MUTATED KRAS WILD-TYPE 
            47            125 
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
            87             85 
  TP53 MUTATED TP53 WILD-TYPE 
            87             85 
[1] "EGFR MUTATION ANALYSIS"
[1] 3
  EGFR MUTATED EGFR WILD-TYPE 
            22            150 
  EGFR MUTATED EGFR WILD-TYPE 
            22            150 
[1] "KRTAP5-5 MUTATION ANALYSIS"
[1] 3
  KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE 
                21                151 
  KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE 
                21                151 
[1] "STK11 MUTATION ANALYSIS"
[1] 3
  STK11 MUTATED STK11 WILD-TYPE 
             20             152 
  STK11 MUTATED STK11 WILD-TYPE 
             20             152 
[1] "KEAP1 MUTATION ANALYSIS"
[1] 3
  KEAP1 MUTATED KEAP1 WILD-TYPE 
             32             140 
  KEAP1 MUTATED KEAP1 WILD-TYPE 
             32             140 
[1] "CRIPAK MUTATION ANALYSIS"
[1] 3
  CRIPAK MUTATED CRIPAK WILD-TYPE 
              12              160 
  CRIPAK MUTATED CRIPAK WILD-TYPE 
              12              160 
[1] "RBM10 MUTATION ANALYSIS"
[1] 3
  RBM10 MUTATED RBM10 WILD-TYPE 
             12             160 
  RBM10 MUTATED RBM10 WILD-TYPE 
             12             160 
[1] "NF1 MUTATION ANALYSIS"
[1] 3
  NF1 MUTATED NF1 WILD-TYPE 
           21           151 
  NF1 MUTATED NF1 WILD-TYPE 
           21           151 
[1] "GPR112 MUTATION ANALYSIS"
[1] 3
  GPR112 MUTATED GPR112 WILD-TYPE 
              35              137 
  GPR112 MUTATED GPR112 WILD-TYPE 
              35              137 
[1] "FLG MUTATION ANALYSIS"
[1] 3
  FLG MUTATED FLG WILD-TYPE 
           44           128 
  FLG MUTATED FLG WILD-TYPE 
           44           128 
[1] "SMARCA4 MUTATION ANALYSIS"
[1] 3
  SMARCA4 MUTATED SMARCA4 WILD-TYPE 
               14               158 
  SMARCA4 MUTATED SMARCA4 WILD-TYPE 
               14               158 
[1] "HRNR MUTATION ANALYSIS"
[1] 3
  HRNR MUTATED HRNR WILD-TYPE 
            25            147 
  HRNR MUTATED HRNR WILD-TYPE 
            25            147 
[1] "MUC7 MUTATION ANALYSIS"
[1] 3
  MUC7 MUTATED MUC7 WILD-TYPE 
            15            157 
  MUC7 MUTATED MUC7 WILD-TYPE 
            15            157 
[1] "COL11A1 MUTATION ANALYSIS"
[1] 3
  COL11A1 MUTATED COL11A1 WILD-TYPE 
               34               138 
  COL11A1 MUTATED COL11A1 WILD-TYPE 
               34               138 
[1] "BRAF MUTATION ANALYSIS"
[1] 3
  BRAF MUTATED BRAF WILD-TYPE 
            15            157 
  BRAF MUTATED BRAF WILD-TYPE 
            15            157 
[1] "U2AF1 MUTATION ANALYSIS"
[1] 3
  U2AF1 MUTATED U2AF1 WILD-TYPE 
              6             166 
  U2AF1 MUTATED U2AF1 WILD-TYPE 
              6             166 
[1] "PCK1 MUTATION ANALYSIS"
[1] 3
  PCK1 MUTATED PCK1 WILD-TYPE 
            10            162 
  PCK1 MUTATED PCK1 WILD-TYPE 
            10            162 
[1] "CSMD3 MUTATION ANALYSIS"
[1] 3
  CSMD3 MUTATED CSMD3 WILD-TYPE 
             78              94 
  CSMD3 MUTATED CSMD3 WILD-TYPE 
             78              94 
[1] "RIMS2 MUTATION ANALYSIS"
[1] 3
  RIMS2 MUTATED RIMS2 WILD-TYPE 
             32             140 
  RIMS2 MUTATED RIMS2 WILD-TYPE 
             32             140 
[1] "FTSJD1 MUTATION ANALYSIS"
[1] 3
  FTSJD1 MUTATED FTSJD1 WILD-TYPE 
               6              166 
  FTSJD1 MUTATED FTSJD1 WILD-TYPE 
               6              166 
[1] "RB1 MUTATION ANALYSIS"
[1] 3
  RB1 MUTATED RB1 WILD-TYPE 
            7           165 
  RB1 MUTATED RB1 WILD-TYPE 
            7           165 
[1] "LRP1B MUTATION ANALYSIS"
[1] 3
  LRP1B MUTATED LRP1B WILD-TYPE 
             61             111 
  LRP1B MUTATED LRP1B WILD-TYPE 
             61             111 
[1] "RIT1 MUTATION ANALYSIS"
[1] 3
  RIT1 MUTATED RIT1 WILD-TYPE 
             8            164 
  RIT1 MUTATED RIT1 WILD-TYPE 
             8            164 
[1] "OR10J3 MUTATION ANALYSIS"
[1] 3
  OR10J3 MUTATED OR10J3 WILD-TYPE 
               9              163 
  OR10J3 MUTATED OR10J3 WILD-TYPE 
               9              163 
[1] "LTBP1 MUTATION ANALYSIS"
[1] 3
  LTBP1 MUTATED LTBP1 WILD-TYPE 
             20             152 
  LTBP1 MUTATED LTBP1 WILD-TYPE 
             20             152 
[1] "SETD2 MUTATION ANALYSIS"
[1] 3
  SETD2 MUTATED SETD2 WILD-TYPE 
             15             157 
  SETD2 MUTATED SETD2 WILD-TYPE 
             15             157 
[1] "ZCCHC5 MUTATION ANALYSIS"
[1] 3
  ZCCHC5 MUTATED ZCCHC5 WILD-TYPE 
              10              162 
  ZCCHC5 MUTATED ZCCHC5 WILD-TYPE 
              10              162 
[1] "ADAMTS5 MUTATION ANALYSIS"
[1] 3
  ADAMTS5 MUTATED ADAMTS5 WILD-TYPE 
               14               158 
  ADAMTS5 MUTATED ADAMTS5 WILD-TYPE 
               14               158 
[1] "GBA3 MUTATION ANALYSIS"
[1] 3
  GBA3 MUTATED GBA3 WILD-TYPE 
             8            164 
  GBA3 MUTATED GBA3 WILD-TYPE 
             8            164 
[1] "MYL10 MUTATION ANALYSIS"
[1] 3
  MYL10 MUTATED MYL10 WILD-TYPE 
              5             167 
  MYL10 MUTATED MYL10 WILD-TYPE 
              5             167 
[1] "SMAD4 MUTATION ANALYSIS"
[1] 3
  SMAD4 MUTATED SMAD4 WILD-TYPE 
              7             165 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
              7             165 
[1] "ZNF268 MUTATION ANALYSIS"
[1] 3
  ZNF268 MUTATED ZNF268 WILD-TYPE 
               5              167 
  ZNF268 MUTATED ZNF268 WILD-TYPE 
               5              167 
[1] "OR4Q3 MUTATION ANALYSIS"
[1] 3
  OR4Q3 MUTATED OR4Q3 WILD-TYPE 
             11             161 
  OR4Q3 MUTATED OR4Q3 WILD-TYPE 
             11             161 
[1] "ARID1A MUTATION ANALYSIS"
[1] 3
  ARID1A MUTATED ARID1A WILD-TYPE 
              11              161 
  ARID1A MUTATED ARID1A WILD-TYPE 
              11              161 
[1] "CCDC73 MUTATION ANALYSIS"
[1] 3
  CCDC73 MUTATED CCDC73 WILD-TYPE 
              11              161 
  CCDC73 MUTATED CCDC73 WILD-TYPE 
              11              161 
[1] "MGA MUTATION ANALYSIS"
[1] 3
  MGA MUTATED MGA WILD-TYPE 
           16           156 
  MGA MUTATED MGA WILD-TYPE 
           16           156 
[1] "FAM48B1 MUTATION ANALYSIS"
[1] 3
  FAM48B1 MUTATED FAM48B1 WILD-TYPE 
               10               162 
  FAM48B1 MUTATED FAM48B1 WILD-TYPE 
               10               162 
[1] "IFNA7 MUTATION ANALYSIS"
[1] 3
  IFNA7 MUTATED IFNA7 WILD-TYPE 
              5             167 
  IFNA7 MUTATED IFNA7 WILD-TYPE 
              5             167 
[1] "FANCD2 MUTATION ANALYSIS"
[1] 3
  FANCD2 MUTATED FANCD2 WILD-TYPE 
               7              165 
  FANCD2 MUTATED FANCD2 WILD-TYPE 
               7              165 
[1] "MBD1 MUTATION ANALYSIS"
[1] 3
  MBD1 MUTATED MBD1 WILD-TYPE 
             6            166 
  MBD1 MUTATED MBD1 WILD-TYPE 
             6            166 
[1] "ASTN2 MUTATION ANALYSIS"
[1] 3
  ASTN2 MUTATED ASTN2 WILD-TYPE 
             15             157 
  ASTN2 MUTATED ASTN2 WILD-TYPE 
             15             157 
[1] "MLL3 MUTATION ANALYSIS"
[1] 3
  MLL3 MUTATED MLL3 WILD-TYPE 
            34            138 
  MLL3 MUTATED MLL3 WILD-TYPE 
            34            138 
[1] "FLI1 MUTATION ANALYSIS"
[1] 3
  FLI1 MUTATED FLI1 WILD-TYPE 
             6            166 
  FLI1 MUTATED FLI1 WILD-TYPE 
             6            166 
[1] "LAX1 MUTATION ANALYSIS"
[1] 3
  LAX1 MUTATED LAX1 WILD-TYPE 
             6            166 
  LAX1 MUTATED LAX1 WILD-TYPE 
             6            166 
[1] "SVOP MUTATION ANALYSIS"
[1] 3
  SVOP MUTATED SVOP WILD-TYPE 
             7            165 
  SVOP MUTATED SVOP WILD-TYPE 
             7            165 
[1] "MTTP MUTATION ANALYSIS"
[1] 3
  MTTP MUTATED MTTP WILD-TYPE 
             6            166 
  MTTP MUTATED MTTP WILD-TYPE 
             6            166 
[1] "COL19A1 MUTATION ANALYSIS"
[1] 3
  COL19A1 MUTATED COL19A1 WILD-TYPE 
               14               158 
  COL19A1 MUTATED COL19A1 WILD-TYPE 
               14               158 
[1] "LRRC32 MUTATION ANALYSIS"
[1] 3
  LRRC32 MUTATED LRRC32 WILD-TYPE 
              11              161 
  LRRC32 MUTATED LRRC32 WILD-TYPE 
              11              161 
[1] "TEX15 MUTATION ANALYSIS"
[1] 3
  TEX15 MUTATED TEX15 WILD-TYPE 
             24             148 
  TEX15 MUTATED TEX15 WILD-TYPE 
             24             148 
[1] "OR10G9 MUTATION ANALYSIS"
[1] 3
  OR10G9 MUTATED OR10G9 WILD-TYPE 
              10              162 
  OR10G9 MUTATED OR10G9 WILD-TYPE 
              10              162 
[1] "CNGA2 MUTATION ANALYSIS"
[1] 3
  CNGA2 MUTATED CNGA2 WILD-TYPE 
             11             161 
  CNGA2 MUTATED CNGA2 WILD-TYPE 
             11             161 
[1] "FGB MUTATION ANALYSIS"
[1] 3
  FGB MUTATED FGB WILD-TYPE 
           11           161 
  FGB MUTATED FGB WILD-TYPE 
           11           161 
[1] "ANP32C MUTATION ANALYSIS"
[1] 3
  ANP32C MUTATED ANP32C WILD-TYPE 
               8              164 
  ANP32C MUTATED ANP32C WILD-TYPE 
               8              164 
[1] "KIAA1755 MUTATION ANALYSIS"
[1] 3
  KIAA1755 MUTATED KIAA1755 WILD-TYPE 
                12                160 
  KIAA1755 MUTATED KIAA1755 WILD-TYPE 
                12                160 
[1] "OVCH1 MUTATION ANALYSIS"
[1] 3
  OVCH1 MUTATED OVCH1 WILD-TYPE 
             14             158 
  OVCH1 MUTATED OVCH1 WILD-TYPE 
             14             158 
[1] "PJA1 MUTATION ANALYSIS"
[1] 3
  PJA1 MUTATED PJA1 WILD-TYPE 
             8            164 
  PJA1 MUTATED PJA1 WILD-TYPE 
             8            164 
[1] "SUN1 MUTATION ANALYSIS"
[1] 3
  SUN1 MUTATED SUN1 WILD-TYPE 
             8            164 
  SUN1 MUTATED SUN1 WILD-TYPE 
             8            164 
[1] "RUFY2 MUTATION ANALYSIS"
[1] 3
  RUFY2 MUTATED RUFY2 WILD-TYPE 
              7             165 
  RUFY2 MUTATED RUFY2 WILD-TYPE 
              7             165 
[1] "PABPC3 MUTATION ANALYSIS"
[1] 3
  PABPC3 MUTATED PABPC3 WILD-TYPE 
               9              163 
  PABPC3 MUTATED PABPC3 WILD-TYPE 
               9              163 
[1] "STXBP5L MUTATION ANALYSIS"
[1] 3
  STXBP5L MUTATED STXBP5L WILD-TYPE 
               12               160 
  STXBP5L MUTATED STXBP5L WILD-TYPE 
               12               160 
[1] "ELTD1 MUTATION ANALYSIS"
[1] 3
  ELTD1 MUTATED ELTD1 WILD-TYPE 
             15             157 
  ELTD1 MUTATED ELTD1 WILD-TYPE 
             15             157 
[1] "KRT28 MUTATION ANALYSIS"
[1] 3
  KRT28 MUTATED KRT28 WILD-TYPE 
              7             165 
  KRT28 MUTATED KRT28 WILD-TYPE 
              7             165 
[1] "EPHA6 MUTATION ANALYSIS"
[1] 3
  EPHA6 MUTATED EPHA6 WILD-TYPE 
             22             150 
  EPHA6 MUTATED EPHA6 WILD-TYPE 
             22             150 
[1] "OR10R2 MUTATION ANALYSIS"
[1] 3
  OR10R2 MUTATED OR10R2 WILD-TYPE 
              10              162 
  OR10R2 MUTATED OR10R2 WILD-TYPE 
              10              162 
[1] "TLR4 MUTATION ANALYSIS"
[1] 3
  TLR4 MUTATED TLR4 WILD-TYPE 
            23            149 
  TLR4 MUTATED TLR4 WILD-TYPE 
            23            149 
[1] "OR6F1 MUTATION ANALYSIS"
[1] 3
  OR6F1 MUTATED OR6F1 WILD-TYPE 
             10             162 
  OR6F1 MUTATED OR6F1 WILD-TYPE 
             10             162 
[1] "THEMIS MUTATION ANALYSIS"
[1] 3
  THEMIS MUTATED THEMIS WILD-TYPE 
              10              162 
  THEMIS MUTATED THEMIS WILD-TYPE 
              10              162 
[1] "DACT1 MUTATION ANALYSIS"
[1] 3
  DACT1 MUTATED DACT1 WILD-TYPE 
             10             162 
  DACT1 MUTATED DACT1 WILD-TYPE 
             10             162 
[1] "APC MUTATION ANALYSIS"
[1] 3
  APC MUTATED APC WILD-TYPE 
           10           162 
  APC MUTATED APC WILD-TYPE 
           10           162 
[1] "SCG2 MUTATION ANALYSIS"
[1] 3
  SCG2 MUTATED SCG2 WILD-TYPE 
             8            164 
  SCG2 MUTATED SCG2 WILD-TYPE 
             8            164 
[1] "BRE MUTATION ANALYSIS"
[1] 3
  BRE MUTATED BRE WILD-TYPE 
            4           168 
  BRE MUTATED BRE WILD-TYPE 
            4           168 
[1] "SERPINB13 MUTATION ANALYSIS"
[1] 3
  SERPINB13 MUTATED SERPINB13 WILD-TYPE 
                  9                 163 
  SERPINB13 MUTATED SERPINB13 WILD-TYPE 
                  9                 163 
[1] "GATA3 MUTATION ANALYSIS"
[1] 3
  GATA3 MUTATED GATA3 WILD-TYPE 
              6             166 
  GATA3 MUTATED GATA3 WILD-TYPE 
              6             166 
[1] "GNG2 MUTATION ANALYSIS"
[1] 3
  GNG2 MUTATED GNG2 WILD-TYPE 
             4            168 
  GNG2 MUTATED GNG2 WILD-TYPE 
             4            168 
[1] "TSHZ3 MUTATION ANALYSIS"
[1] 3
  TSHZ3 MUTATED TSHZ3 WILD-TYPE 
             25             147 
  TSHZ3 MUTATED TSHZ3 WILD-TYPE 
             25             147 
[1] "GPR158 MUTATION ANALYSIS"
[1] 3
  GPR158 MUTATED GPR158 WILD-TYPE 
              18              154 
  GPR158 MUTATED GPR158 WILD-TYPE 
              18              154 
[1] "SPTA1 MUTATION ANALYSIS"
[1] 3
  SPTA1 MUTATED SPTA1 WILD-TYPE 
             51             121 
  SPTA1 MUTATED SPTA1 WILD-TYPE 
             51             121 
[1] "PDGFA MUTATION ANALYSIS"
[1] 3
  PDGFA MUTATED PDGFA WILD-TYPE 
              5             167 
  PDGFA MUTATED PDGFA WILD-TYPE 
              5             167 
[1] "F8 MUTATION ANALYSIS"
[1] 3
  F8 MUTATED F8 WILD-TYPE 
          15          157 
  F8 MUTATED F8 WILD-TYPE 
          15          157 
[1] "CTRC MUTATION ANALYSIS"
[1] 3
  CTRC MUTATED CTRC WILD-TYPE 
             4            168 
  CTRC MUTATED CTRC WILD-TYPE 
             4            168 
[1] "EPHB6 MUTATION ANALYSIS"
[1] 3
  EPHB6 MUTATED EPHB6 WILD-TYPE 
             19             153 
  EPHB6 MUTATED EPHB6 WILD-TYPE 
             19             153 
[1] "C12ORF74 MUTATION ANALYSIS"
[1] 3
  C12ORF74 MUTATED C12ORF74 WILD-TYPE 
                 3                169 
  C12ORF74 MUTATED C12ORF74 WILD-TYPE 
                 3                169 
[1] "DENND2A MUTATION ANALYSIS"
[1] 3
  DENND2A MUTATED DENND2A WILD-TYPE 
                9               163 
  DENND2A MUTATED DENND2A WILD-TYPE 
                9               163 
[1] "POF1B MUTATION ANALYSIS"
[1] 3
  POF1B MUTATED POF1B WILD-TYPE 
              9             163 
  POF1B MUTATED POF1B WILD-TYPE 
              9             163 
[1] "TMTC1 MUTATION ANALYSIS"
[1] 3
  TMTC1 MUTATED TMTC1 WILD-TYPE 
             22             150 
  TMTC1 MUTATED TMTC1 WILD-TYPE 
             22             150 
[1] "OR2F2 MUTATION ANALYSIS"
[1] 3
  OR2F2 MUTATED OR2F2 WILD-TYPE 
              6             166 
  OR2F2 MUTATED OR2F2 WILD-TYPE 
              6             166 
[1] "SPATA18 MUTATION ANALYSIS"
[1] 3
  SPATA18 MUTATED SPATA18 WILD-TYPE 
                8               164 
  SPATA18 MUTATED SPATA18 WILD-TYPE 
                8               164 
[1] "FSCB MUTATION ANALYSIS"
[1] 3
  FSCB MUTATED FSCB WILD-TYPE 
            15            157 
  FSCB MUTATED FSCB WILD-TYPE 
            15            157 
[1] "TBX21 MUTATION ANALYSIS"
[1] 3
  TBX21 MUTATED TBX21 WILD-TYPE 
              7             165 
  TBX21 MUTATED TBX21 WILD-TYPE 
              7             165 
[1] "CDH6 MUTATION ANALYSIS"
[1] 3
  CDH6 MUTATED CDH6 WILD-TYPE 
            17            155 
  CDH6 MUTATED CDH6 WILD-TYPE 
            17            155 
[1] "TTC18 MUTATION ANALYSIS"
[1] 3
  TTC18 MUTATED TTC18 WILD-TYPE 
              5             167 
  TTC18 MUTATED TTC18 WILD-TYPE 
              5             167 
[1] "NALCN MUTATION ANALYSIS"
[1] 3
  NALCN MUTATED NALCN WILD-TYPE 
             24             148 
  NALCN MUTATED NALCN WILD-TYPE 
             24             148 
[1] "ABCB5 MUTATION ANALYSIS"
[1] 3
  ABCB5 MUTATED ABCB5 WILD-TYPE 
             19             153 
  ABCB5 MUTATED ABCB5 WILD-TYPE 
             19             153 
[1] "OR5I1 MUTATION ANALYSIS"
[1] 3
  OR5I1 MUTATED OR5I1 WILD-TYPE 
             11             161 
  OR5I1 MUTATED OR5I1 WILD-TYPE 
             11             161 
[1] "COL5A1 MUTATION ANALYSIS"
[1] 3
  COL5A1 MUTATED COL5A1 WILD-TYPE 
              13              159 
  COL5A1 MUTATED COL5A1 WILD-TYPE 
              13              159 
[1] "ITGAX MUTATION ANALYSIS"
[1] 3
  ITGAX MUTATED ITGAX WILD-TYPE 
             17             155 
  ITGAX MUTATED ITGAX WILD-TYPE 
             17             155 
[1] "FBXL7 MUTATION ANALYSIS"
[1] 3
  FBXL7 MUTATED FBXL7 WILD-TYPE 
             17             155 
  FBXL7 MUTATED FBXL7 WILD-TYPE 
             17             155 
[1] "SVEP1 MUTATION ANALYSIS"
[1] 3
  SVEP1 MUTATED SVEP1 WILD-TYPE 
             21             151 
  SVEP1 MUTATED SVEP1 WILD-TYPE 
             21             151 
[1] "DEFB112 MUTATION ANALYSIS"
[1] 3
  DEFB112 MUTATED DEFB112 WILD-TYPE 
                4               168 
  DEFB112 MUTATED DEFB112 WILD-TYPE 
                4               168 
[1] "ARID2 MUTATION ANALYSIS"
[1] 3
  ARID2 MUTATED ARID2 WILD-TYPE 
             12             160 
  ARID2 MUTATED ARID2 WILD-TYPE 
             12             160 
[1] "ANKRD44 MUTATION ANALYSIS"
[1] 3
  ANKRD44 MUTATED ANKRD44 WILD-TYPE 
                9               163 
  ANKRD44 MUTATED ANKRD44 WILD-TYPE 
                9               163 
[1] "OR4C16 MUTATION ANALYSIS"
[1] 3
  OR4C16 MUTATED OR4C16 WILD-TYPE 
              14              158 
  OR4C16 MUTATED OR4C16 WILD-TYPE 
              14              158 
[1] "EPS8L3 MUTATION ANALYSIS"
[1] 3
  EPS8L3 MUTATED EPS8L3 WILD-TYPE 
               4              168 
  EPS8L3 MUTATED EPS8L3 WILD-TYPE 
               4              168 
[1] "TARS2 MUTATION ANALYSIS"
[1] 3
  TARS2 MUTATED TARS2 WILD-TYPE 
              8             164 
  TARS2 MUTATED TARS2 WILD-TYPE 
              8             164 
[1] "SPEG MUTATION ANALYSIS"
[1] 3
  SPEG MUTATED SPEG WILD-TYPE 
            16            156 
  SPEG MUTATED SPEG WILD-TYPE 
            16            156 
[1] "GPR174 MUTATION ANALYSIS"
[1] 3
  GPR174 MUTATED GPR174 WILD-TYPE 
               6              166 
  GPR174 MUTATED GPR174 WILD-TYPE 
               6              166 
[1] "KIF9 MUTATION ANALYSIS"
[1] 3
  KIF9 MUTATED KIF9 WILD-TYPE 
             7            165 
  KIF9 MUTATED KIF9 WILD-TYPE 
             7            165 
[1] "OR2T27 MUTATION ANALYSIS"
[1] 3
  OR2T27 MUTATED OR2T27 WILD-TYPE 
               8              164 
  OR2T27 MUTATED OR2T27 WILD-TYPE 
               8              164 
[1] "CYP1A1 MUTATION ANALYSIS"
[1] 3
  CYP1A1 MUTATED CYP1A1 WILD-TYPE 
               4              168 
  CYP1A1 MUTATED CYP1A1 WILD-TYPE 
               4              168 
[1] "C1ORF173 MUTATION ANALYSIS"
[1] 3
  C1ORF173 MUTATED C1ORF173 WILD-TYPE 
                25                147 
  C1ORF173 MUTATED C1ORF173 WILD-TYPE 
                25                147 
[1] "SH2D2A MUTATION ANALYSIS"
[1] 3
  SH2D2A MUTATED SH2D2A WILD-TYPE 
               6              166 
  SH2D2A MUTATED SH2D2A WILD-TYPE 
               6              166 
[1] "CD5L MUTATION ANALYSIS"
[1] 3
  CD5L MUTATED CD5L WILD-TYPE 
            12            160 
  CD5L MUTATED CD5L WILD-TYPE 
            12            160 
[1] "ANKRD56 MUTATION ANALYSIS"
[1] 3
  ANKRD56 MUTATED ANKRD56 WILD-TYPE 
               11               161 
  ANKRD56 MUTATED ANKRD56 WILD-TYPE 
               11               161 
[1] "HOXA5 MUTATION ANALYSIS"
[1] 3
  HOXA5 MUTATED HOXA5 WILD-TYPE 
              6             166 
  HOXA5 MUTATED HOXA5 WILD-TYPE 
              6             166 
[1] "FERD3L MUTATION ANALYSIS"
[1] 3
  FERD3L MUTATED FERD3L WILD-TYPE 
               7              165 
  FERD3L MUTATED FERD3L WILD-TYPE 
               7              165 
[1] "PLA2G4E MUTATION ANALYSIS"
[1] 3
  PLA2G4E MUTATED PLA2G4E WILD-TYPE 
                4               168 
  PLA2G4E MUTATED PLA2G4E WILD-TYPE 
                4               168 
[1] "RP1L1 MUTATION ANALYSIS"
[1] 3
  RP1L1 MUTATED RP1L1 WILD-TYPE 
             32             140 
  RP1L1 MUTATED RP1L1 WILD-TYPE 
             32             140 
[1] "SIRPB1 MUTATION ANALYSIS"
[1] 3
  SIRPB1 MUTATED SIRPB1 WILD-TYPE 
               6              166 
  SIRPB1 MUTATED SIRPB1 WILD-TYPE 
               6              166 
[1] "GTF2I MUTATION ANALYSIS"
[1] 3
  GTF2I MUTATED GTF2I WILD-TYPE 
              3             169 
  GTF2I MUTATED GTF2I WILD-TYPE 
              3             169 
[1] "COL3A1 MUTATION ANALYSIS"
[1] 3
  COL3A1 MUTATED COL3A1 WILD-TYPE 
              22              150 
  COL3A1 MUTATED COL3A1 WILD-TYPE 
              22              150 
[1] "MUC16 MUTATION ANALYSIS"
[1] 3
  MUC16 MUTATED MUC16 WILD-TYPE 
             79              93 
  MUC16 MUTATED MUC16 WILD-TYPE 
             79              93 
[1] "VPS13C MUTATION ANALYSIS"
[1] 3
  VPS13C MUTATED VPS13C WILD-TYPE 
              19              153 
  VPS13C MUTATED VPS13C WILD-TYPE 
              19              153 
[1] "HOXA3 MUTATION ANALYSIS"
[1] 3
  HOXA3 MUTATED HOXA3 WILD-TYPE 
              6             166 
  HOXA3 MUTATED HOXA3 WILD-TYPE 
              6             166 
[1] "TBX15 MUTATION ANALYSIS"
[1] 3
  TBX15 MUTATED TBX15 WILD-TYPE 
             11             161 
  TBX15 MUTATED TBX15 WILD-TYPE 
             11             161 
[1] "OR56A4 MUTATION ANALYSIS"
[1] 3
  OR56A4 MUTATED OR56A4 WILD-TYPE 
               6              166 
  OR56A4 MUTATED OR56A4 WILD-TYPE 
               6              166 
[1] "HCK MUTATION ANALYSIS"
[1] 3
  HCK MUTATED HCK WILD-TYPE 
            6           166 
  HCK MUTATED HCK WILD-TYPE 
            6           166 
[1] "KDR MUTATION ANALYSIS"
[1] 3
  KDR MUTATED KDR WILD-TYPE 
           20           152 
  KDR MUTATED KDR WILD-TYPE 
           20           152 
[1] "BRS3 MUTATION ANALYSIS"
[1] 3
  BRS3 MUTATED BRS3 WILD-TYPE 
             7            165 
  BRS3 MUTATED BRS3 WILD-TYPE 
             7            165 
[1] "LPPR4 MUTATION ANALYSIS"
[1] 3
  LPPR4 MUTATED LPPR4 WILD-TYPE 
             14             158 
  LPPR4 MUTATED LPPR4 WILD-TYPE 
             14             158 
[1] "KDM5C MUTATION ANALYSIS"
[1] 3
  KDM5C MUTATED KDM5C WILD-TYPE 
              8             164 
  KDM5C MUTATED KDM5C WILD-TYPE 
              8             164 
[1] "TRPC1 MUTATION ANALYSIS"
[1] 3
  TRPC1 MUTATED TRPC1 WILD-TYPE 
              7             165 
  TRPC1 MUTATED TRPC1 WILD-TYPE 
              7             165 
[1] "HAX1 MUTATION ANALYSIS"
[1] 3
  HAX1 MUTATED HAX1 WILD-TYPE 
             4            168 
  HAX1 MUTATED HAX1 WILD-TYPE 
             4            168 
[1] "ZNF260 MUTATION ANALYSIS"
[1] 3
  ZNF260 MUTATED ZNF260 WILD-TYPE 
               4              168 
  ZNF260 MUTATED ZNF260 WILD-TYPE 
               4              168 
[1] "OLAH MUTATION ANALYSIS"
[1] 3
  OLAH MUTATED OLAH WILD-TYPE 
             7            165 
  OLAH MUTATED OLAH WILD-TYPE 
             7            165 
[1] "C9ORF64 MUTATION ANALYSIS"
[1] 3
  C9ORF64 MUTATED C9ORF64 WILD-TYPE 
                3               169 
  C9ORF64 MUTATED C9ORF64 WILD-TYPE 
                3               169 
[1] "ATM MUTATION ANALYSIS"
[1] 3
  ATM MUTATED ATM WILD-TYPE 
           15           157 
  ATM MUTATED ATM WILD-TYPE 
           15           157 
[1] "POLR3B MUTATION ANALYSIS"
[1] 3
  POLR3B MUTATED POLR3B WILD-TYPE 
              11              161 
  POLR3B MUTATED POLR3B WILD-TYPE 
              11              161 
[1] "C1ORF49 MUTATION ANALYSIS"
[1] 3
  C1ORF49 MUTATED C1ORF49 WILD-TYPE 
                6               166 
  C1ORF49 MUTATED C1ORF49 WILD-TYPE 
                6               166 
[1] "MFSD8 MUTATION ANALYSIS"
[1] 3
  MFSD8 MUTATED MFSD8 WILD-TYPE 
              5             167 
  MFSD8 MUTATED MFSD8 WILD-TYPE 
              5             167 
[1] "OR4A15 MUTATION ANALYSIS"
[1] 3
  OR4A15 MUTATED OR4A15 WILD-TYPE 
              14              158 
  OR4A15 MUTATED OR4A15 WILD-TYPE 
              14              158 
[1] "LELP1 MUTATION ANALYSIS"
[1] 3
  LELP1 MUTATED LELP1 WILD-TYPE 
              3             169 
  LELP1 MUTATED LELP1 WILD-TYPE 
              3             169 
[1] "AOAH MUTATION ANALYSIS"
[1] 3
  AOAH MUTATED AOAH WILD-TYPE 
             8            164 
  AOAH MUTATED AOAH WILD-TYPE 
             8            164 
[1] "GRK5 MUTATION ANALYSIS"
[1] 3
  GRK5 MUTATED GRK5 WILD-TYPE 
             7            165 
  GRK5 MUTATED GRK5 WILD-TYPE 
             7            165 
[1] "FCRL4 MUTATION ANALYSIS"
[1] 3
  FCRL4 MUTATED FCRL4 WILD-TYPE 
              7             165 
  FCRL4 MUTATED FCRL4 WILD-TYPE 
              7             165 
[1] "NT5DC3 MUTATION ANALYSIS"
[1] 3
  NT5DC3 MUTATED NT5DC3 WILD-TYPE 
               5              167 
  NT5DC3 MUTATED NT5DC3 WILD-TYPE 
               5              167 
[1] "NAALAD2 MUTATION ANALYSIS"
[1] 3
  NAALAD2 MUTATED NAALAD2 WILD-TYPE 
                9               163 
  NAALAD2 MUTATED NAALAD2 WILD-TYPE 
                9               163 
[1] "C8ORF37 MUTATION ANALYSIS"
[1] 3
  C8ORF37 MUTATED C8ORF37 WILD-TYPE 
                6               166 
  C8ORF37 MUTATED C8ORF37 WILD-TYPE 
                6               166 
[1] "XIRP2 MUTATION ANALYSIS"
[1] 3
  XIRP2 MUTATED XIRP2 WILD-TYPE 
             47             125 
  XIRP2 MUTATED XIRP2 WILD-TYPE 
             47             125 
[1] "PTH MUTATION ANALYSIS"
[1] 3
  PTH MUTATED PTH WILD-TYPE 
            3           169 
  PTH MUTATED PTH WILD-TYPE 
            3           169 
[1] "STAC3 MUTATION ANALYSIS"
[1] 3
  STAC3 MUTATED STAC3 WILD-TYPE 
              3             169 
  STAC3 MUTATED STAC3 WILD-TYPE 
              3             169 
[1] "IL18RAP MUTATION ANALYSIS"
[1] 3
  IL18RAP MUTATED IL18RAP WILD-TYPE 
                5               167 
  IL18RAP MUTATED IL18RAP WILD-TYPE 
                5               167 
[1] "TAAR5 MUTATION ANALYSIS"
[1] 3
  TAAR5 MUTATED TAAR5 WILD-TYPE 
              7             165 
  TAAR5 MUTATED TAAR5 WILD-TYPE 
              7             165 
[1] "C2ORF39 MUTATION ANALYSIS"
[1] 3
  C2ORF39 MUTATED C2ORF39 WILD-TYPE 
                8               164 
  C2ORF39 MUTATED C2ORF39 WILD-TYPE 
                8               164 
[1] "OR13G1 MUTATION ANALYSIS"
[1] 3
  OR13G1 MUTATED OR13G1 WILD-TYPE 
               9              163 
  OR13G1 MUTATED OR13G1 WILD-TYPE 
               9              163 
[1] "OR2G2 MUTATION ANALYSIS"
[1] 3
  OR2G2 MUTATED OR2G2 WILD-TYPE 
             12             160 
  OR2G2 MUTATED OR2G2 WILD-TYPE 
             12             160 
[1] "ADAMTS2 MUTATION ANALYSIS"
[1] 3
  ADAMTS2 MUTATED ADAMTS2 WILD-TYPE 
               14               158 
  ADAMTS2 MUTATED ADAMTS2 WILD-TYPE 
               14               158 
[1] "FBN2 MUTATION ANALYSIS"
[1] 3
  FBN2 MUTATED FBN2 WILD-TYPE 
            29            143 
  FBN2 MUTATED FBN2 WILD-TYPE 
            29            143 
[1] "BTK MUTATION ANALYSIS"
[1] 3
  BTK MUTATED BTK WILD-TYPE 
            7           165 
  BTK MUTATED BTK WILD-TYPE 
            7           165 
[1] "REG1B MUTATION ANALYSIS"
[1] 3
  REG1B MUTATED REG1B WILD-TYPE 
             13             159 
  REG1B MUTATED REG1B WILD-TYPE 
             13             159 
[1] "COL5A2 MUTATION ANALYSIS"
[1] 3
  COL5A2 MUTATED COL5A2 WILD-TYPE 
              18              154 
  COL5A2 MUTATED COL5A2 WILD-TYPE 
              18              154 
[1] "NHEDC1 MUTATION ANALYSIS"
[1] 3
  NHEDC1 MUTATED NHEDC1 WILD-TYPE 
               9              163 
  NHEDC1 MUTATED NHEDC1 WILD-TYPE 
               9              163 
[1] "IL1RAPL1 MUTATION ANALYSIS"
[1] 3
  IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE 
                11                161 
  IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE 
                11                161 
[1] "DGKB MUTATION ANALYSIS"
[1] 3
  DGKB MUTATED DGKB WILD-TYPE 
            11            161 
  DGKB MUTATED DGKB WILD-TYPE 
            11            161 
[1] "COL25A1 MUTATION ANALYSIS"
[1] 3
  COL25A1 MUTATED COL25A1 WILD-TYPE 
               11               161 
  COL25A1 MUTATED COL25A1 WILD-TYPE 
               11               161 
[1] "SEMA5A MUTATION ANALYSIS"
[1] 3
  SEMA5A MUTATED SEMA5A WILD-TYPE 
              15              157 
  SEMA5A MUTATED SEMA5A WILD-TYPE 
              15              157 
[1] "BHMT MUTATION ANALYSIS"
[1] 3
  BHMT MUTATED BHMT WILD-TYPE 
             5            167 
  BHMT MUTATED BHMT WILD-TYPE 
             5            167 
[1] "CXCL6 MUTATION ANALYSIS"
[1] 3
  CXCL6 MUTATED CXCL6 WILD-TYPE 
              4             168 
  CXCL6 MUTATED CXCL6 WILD-TYPE 
              4             168 
[1] "CLEC12B MUTATION ANALYSIS"
[1] 3
  CLEC12B MUTATED CLEC12B WILD-TYPE 
                3               169 
  CLEC12B MUTATED CLEC12B WILD-TYPE 
                3               169 
[1] "DYDC2 MUTATION ANALYSIS"
[1] 3
  DYDC2 MUTATED DYDC2 WILD-TYPE 
              3             169 
  DYDC2 MUTATED DYDC2 WILD-TYPE 
              3             169 
[1] "AKR1B10 MUTATION ANALYSIS"
[1] 3
  AKR1B10 MUTATED AKR1B10 WILD-TYPE 
                4               168 
  AKR1B10 MUTATED AKR1B10 WILD-TYPE 
                4               168 
[1] "CMA1 MUTATION ANALYSIS"
[1] 3
  CMA1 MUTATED CMA1 WILD-TYPE 
             4            168 
  CMA1 MUTATED CMA1 WILD-TYPE 
             4            168 
[1] "KRTAP1-5 MUTATION ANALYSIS"
[1] 3
  KRTAP1-5 MUTATED KRTAP1-5 WILD-TYPE 
                 7                165 
  KRTAP1-5 MUTATED KRTAP1-5 WILD-TYPE 
                 7                165 
[1] "STX2 MUTATION ANALYSIS"
[1] 3
  STX2 MUTATED STX2 WILD-TYPE 
             4            168 
  STX2 MUTATED STX2 WILD-TYPE 
             4            168 
[1] "AQP10 MUTATION ANALYSIS"
[1] 3
  AQP10 MUTATED AQP10 WILD-TYPE 
              6             166 
  AQP10 MUTATED AQP10 WILD-TYPE 
              6             166 
[1] "P2RX7 MUTATION ANALYSIS"
[1] 3
  P2RX7 MUTATED P2RX7 WILD-TYPE 
              4             168 
  P2RX7 MUTATED P2RX7 WILD-TYPE 
              4             168 
[1] "NETO1 MUTATION ANALYSIS"
[1] 3
  NETO1 MUTATED NETO1 WILD-TYPE 
             14             158 
  NETO1 MUTATED NETO1 WILD-TYPE 
             14             158 
[1] "MGAT4C MUTATION ANALYSIS"
[1] 3
  MGAT4C MUTATED MGAT4C WILD-TYPE 
               7              165 
  MGAT4C MUTATED MGAT4C WILD-TYPE 
               7              165 
[1] "SLC34A2 MUTATION ANALYSIS"
[1] 3
  SLC34A2 MUTATED SLC34A2 WILD-TYPE 
                8               164 
  SLC34A2 MUTATED SLC34A2 WILD-TYPE 
                8               164 
[1] "NTRK1 MUTATION ANALYSIS"
[1] 3
  NTRK1 MUTATED NTRK1 WILD-TYPE 
              7             165 
  NTRK1 MUTATED NTRK1 WILD-TYPE 
              7             165 
[1] "VEGFC MUTATION ANALYSIS"
[1] 3
  VEGFC MUTATED VEGFC WILD-TYPE 
              9             163 
  VEGFC MUTATED VEGFC WILD-TYPE 
              9             163 
[1] "GC MUTATION ANALYSIS"
[1] 3
  GC MUTATED GC WILD-TYPE 
           5          167 
  GC MUTATED GC WILD-TYPE 
           5          167 
[1] "CTCFL MUTATION ANALYSIS"
[1] 3
  CTCFL MUTATED CTCFL WILD-TYPE 
             11             161 
  CTCFL MUTATED CTCFL WILD-TYPE 
             11             161 
[1] "DYTN MUTATION ANALYSIS"
[1] 3
  DYTN MUTATED DYTN WILD-TYPE 
            10            162 
  DYTN MUTATED DYTN WILD-TYPE 
            10            162 
[1] "EHHADH MUTATION ANALYSIS"
[1] 3
  EHHADH MUTATED EHHADH WILD-TYPE 
               4              168 
  EHHADH MUTATED EHHADH WILD-TYPE 
               4              168 
[1] "COL4A2 MUTATION ANALYSIS"
[1] 3
  COL4A2 MUTATED COL4A2 WILD-TYPE 
              11              161 
  COL4A2 MUTATED COL4A2 WILD-TYPE 
              11              161 
[1] "ABCG5 MUTATION ANALYSIS"
[1] 3
  ABCG5 MUTATED ABCG5 WILD-TYPE 
              9             163 
  ABCG5 MUTATED ABCG5 WILD-TYPE 
              9             163 
[1] "OR10G2 MUTATION ANALYSIS"
[1] 3
  OR10G2 MUTATED OR10G2 WILD-TYPE 
               5              167 
  OR10G2 MUTATED OR10G2 WILD-TYPE 
               5              167 
[1] "CYP4V2 MUTATION ANALYSIS"
[1] 3
  CYP4V2 MUTATED CYP4V2 WILD-TYPE 
               6              166 
  CYP4V2 MUTATED CYP4V2 WILD-TYPE 
               6              166 
[1] "EIF2C1 MUTATION ANALYSIS"
[1] 3
  EIF2C1 MUTATED EIF2C1 WILD-TYPE 
               4              168 
  EIF2C1 MUTATED EIF2C1 WILD-TYPE 
               4              168 
[1] "CCDC39 MUTATION ANALYSIS"
[1] 3
  CCDC39 MUTATED CCDC39 WILD-TYPE 
               7              165 
  CCDC39 MUTATED CCDC39 WILD-TYPE 
               7              165 
[1] "FAM5C MUTATION ANALYSIS"
[1] 3
  FAM5C MUTATED FAM5C WILD-TYPE 
             28             144 
  FAM5C MUTATED FAM5C WILD-TYPE 
             28             144 
[1] "TKTL1 MUTATION ANALYSIS"
[1] 3
  TKTL1 MUTATED TKTL1 WILD-TYPE 
              5             167 
  TKTL1 MUTATED TKTL1 WILD-TYPE 
              5             167 
[1] "SLC22A6 MUTATION ANALYSIS"
[1] 3
  SLC22A6 MUTATED SLC22A6 WILD-TYPE 
                8               164 
  SLC22A6 MUTATED SLC22A6 WILD-TYPE 
                8               164 
[1] "PPP3CA MUTATION ANALYSIS"
[1] 3
  PPP3CA MUTATED PPP3CA WILD-TYPE 
               3              169 
  PPP3CA MUTATED PPP3CA WILD-TYPE 
               3              169 
[1] "C20ORF132 MUTATION ANALYSIS"
[1] 3
  C20ORF132 MUTATED C20ORF132 WILD-TYPE 
                  8                 164 
  C20ORF132 MUTATED C20ORF132 WILD-TYPE 
                  8                 164 
[1] "EIF4G3 MUTATION ANALYSIS"
[1] 3
  EIF4G3 MUTATED EIF4G3 WILD-TYPE 
               6              166 
  EIF4G3 MUTATED EIF4G3 WILD-TYPE 
               6              166 
[1] "PLCB1 MUTATION ANALYSIS"
[1] 3
  PLCB1 MUTATED PLCB1 WILD-TYPE 
             12             160 
  PLCB1 MUTATED PLCB1 WILD-TYPE 
             12             160 
[1] "KRTAP19-6 MUTATION ANALYSIS"
[1] 3
  KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE 
                  4                 168 
  KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE 
                  4                 168 
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 12 rows and 172 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 172 columns, 0 survival variables, and 12 non-survival variables.
MRNA_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = CDKN2A MUTATION ANALYSIS
D1V1, multiclass
[1] "Remove cluster labels:" "CDKN2A MUTATED"        
clus
  CDKN2A MUTATED CDKN2A WILD-TYPE 
               2               30 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-3918       TCGA-44-3919       TCGA-44-4112       TCGA-55-1592 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3772 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
D1V2, multiclass
[1] "Remove cluster labels:" "CDKN2A MUTATED"        
clus
  CDKN2A MUTATED CDKN2A WILD-TYPE 
               2               30 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-44-3918       TCGA-44-3919       TCGA-44-4112       TCGA-55-1592 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3772 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
D1V3, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              3               67
  CLUS_2              3               65
  CLUS_3              2               32
D1V4, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              0               34
  CLUS_2              1               32
  CLUS_3              2               41
D1V5, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              3               70
  CLUS_2              1               22
  CLUS_3              3               36
D1V6, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              4               73
  CLUS_2              1               25
  CLUS_3              2               30
D1V7, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              2               47
  CLUS_2              4               65
  CLUS_3              2               51
D1V8, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              3               47
  CLUS_2              3               65
  CLUS_3              2               51
D1V9, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              3               56
  CLUS_2              4               76
  CLUS_3              1               28
D1V10, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              1               19
  CLUS_2              3               88
  CLUS_3              4               53
D1V11, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              2               44
  CLUS_2              0               35
  CLUS_3              1               23
D1V12, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              1               10
  CLUS_2              0               46
  CLUS_3              2               46

Clustering(2) Variable = KRAS MUTATION ANALYSIS
D2V1, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            2              3
  CLUS_2            3              6
  CLUS_3            3              9
  CLUS_4            1              5
D2V2, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            2              5
  CLUS_2            3             10
  CLUS_3            4              8
D2V3, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           13             57
  CLUS_2           20             48
  CLUS_3           14             20
D2V4, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           10             24
  CLUS_2            9             24
  CLUS_3            8             35
D2V5, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           15             58
  CLUS_2            9             14
  CLUS_3            9             30
D2V6, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           14             63
  CLUS_2           10             16
  CLUS_3            9             23
D2V7, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           16             33
  CLUS_2           16             53
  CLUS_3           14             39
D2V8, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           12             38
  CLUS_2           20             48
  CLUS_3           14             39
D2V9, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           24             35
  CLUS_2           16             64
  CLUS_3            5             24
D2V10, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            3             17
  CLUS_2           21             70
  CLUS_3           21             36
D2V11, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           16             30
  CLUS_2            6             29
  CLUS_3            5             19
D2V12, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            2              9
  CLUS_2            9             37
  CLUS_3           16             32

Clustering(3) Variable = TP53 MUTATION ANALYSIS
D3V1, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            1              4
  CLUS_2            6              3
  CLUS_3            3              9
  CLUS_4            6              0
D3V2, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            6              1
  CLUS_2            4              9
  CLUS_3            6              6
D3V3, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           46             24
  CLUS_2           23             45
  CLUS_3           18             16
D3V4, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           17             17
  CLUS_2           21             12
  CLUS_3           21             22
D3V5, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           37             36
  CLUS_2            5             18
  CLUS_3           28             11
D3V6, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           43             34
  CLUS_2            4             22
  CLUS_3           23              9
D3V7, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           13             36
  CLUS_2           46             23
  CLUS_3           27             26
D3V8, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           34             16
  CLUS_2           22             46
  CLUS_3           30             23
D3V9, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           20             39
  CLUS_2           48             32
  CLUS_3           17             12
D3V10, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            7             13
  CLUS_2           54             37
  CLUS_3           24             33
D3V11, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           24             22
  CLUS_2           21             14
  CLUS_3           10             14
D3V12, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            4              7
  CLUS_2           27             19
  CLUS_3           24             24

Clustering(4) Variable = EGFR MUTATION ANALYSIS
D4V1, multiclass
[1] "Remove cluster labels:" "EGFR MUTATED"          
clus
  EGFR MUTATED EGFR WILD-TYPE 
             2             30 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2656 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2659     TCGA-44-2661     TCGA-44-2662 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-2665     TCGA-44-2666     TCGA-44-2668     TCGA-44-3398 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-3918     TCGA-44-3919     TCGA-44-4112     TCGA-55-1592 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-55-1594     TCGA-55-1595     TCGA-55-1596     TCGA-64-1676 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-64-1677     TCGA-64-1678     TCGA-64-1680     TCGA-67-3771 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-67-3773     TCGA-67-3774 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" 
D4V2, multiclass
[1] "Remove cluster labels:" "EGFR MUTATED"          
clus
  EGFR MUTATED EGFR WILD-TYPE 
             2             30 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2656 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2659     TCGA-44-2661     TCGA-44-2662 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-2665     TCGA-44-2666     TCGA-44-2668     TCGA-44-3398 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-44-3918     TCGA-44-3919     TCGA-44-4112     TCGA-55-1592 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-55-1594     TCGA-55-1595     TCGA-55-1596     TCGA-64-1676 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-64-1677     TCGA-64-1678     TCGA-64-1680     TCGA-67-3771 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-67-3773     TCGA-67-3774 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" 
D4V3, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1           13             57
  CLUS_2            7             61
  CLUS_3            2             32
D4V4, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1            4             30
  CLUS_2            4             29
  CLUS_3            5             38
D4V5, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1           13             60
  CLUS_2            1             22
  CLUS_3            3             36
D4V6, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1           12             65
  CLUS_2            2             24
  CLUS_3            3             29
D4V7, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1           10             39
  CLUS_2           10             59
  CLUS_3            2             51
D4V8, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1            7             43
  CLUS_2           12             56
  CLUS_3            3             50
D4V9, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1            5             54
  CLUS_2           11             69
  CLUS_3            6             23
D4V10, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1            5             15
  CLUS_2           12             79
  CLUS_3            5             52
D4V11, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1            8             38
  CLUS_2            1             34
  CLUS_3            4             20
D4V12, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1            4              7
  CLUS_2            2             44
  CLUS_3            7             41

Clustering(5) Variable = KRTAP5-5 MUTATION ANALYSIS
D5V1, multiclass
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                2                  7
  CLUS_3                1                 11
  CLUS_4                1                  5
D5V2, multiclass
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  CLUS_1                1                  6
  CLUS_2                2                 11
  CLUS_3                1                 11
D5V3, multiclass
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  CLUS_1               10                 60
  CLUS_2                9                 59
  CLUS_3                2                 32
D5V4, multiclass
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  CLUS_1                4                 30
  CLUS_2                5                 28
  CLUS_3                5                 38
D5V5, multiclass
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  CLUS_1               10                 63
  CLUS_2                0                 23
  CLUS_3                7                 32
D5V6, multiclass
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  CLUS_1               12                 65
  CLUS_2                2                 24
  CLUS_3                3                 29
D5V7, multiclass
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  CLUS_1                7                 42
  CLUS_2                8                 61
  CLUS_3                6                 47
D5V8, multiclass
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  CLUS_1                7                 43
  CLUS_2               10                 58
  CLUS_3                4                 49
D5V9, multiclass
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  CLUS_1                8                 51
  CLUS_2               10                 70
  CLUS_3                3                 26
D5V10, multiclass
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  CLUS_1                2                 18
  CLUS_2               12                 79
  CLUS_3                7                 50
D5V11, multiclass
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  CLUS_1                5                 41
  CLUS_2                3                 32
  CLUS_3                5                 19
D5V12, multiclass
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  CLUS_1                2                  9
  CLUS_2                3                 43
  CLUS_3                8                 40

Clustering(6) Variable = STK11 MUTATION ANALYSIS
D6V1, multiclass
        clus
vv       STK11 MUTATED STK11 WILD-TYPE
  CLUS_1             0               5
  CLUS_2             0               9
  CLUS_3             2              10
  CLUS_4             1               5
D6V2, multiclass
        clus
vv       STK11 MUTATED STK11 WILD-TYPE
  CLUS_1             1               6
  CLUS_2             2              11
  CLUS_3             0              12
D6V3, multiclass
        clus
vv       STK11 MUTATED STK11 WILD-TYPE
  CLUS_1             6              64
  CLUS_2            11              57
  CLUS_3             3              31
D6V4, multiclass
        clus
vv       STK11 MUTATED STK11 WILD-TYPE
  CLUS_1             6              28
  CLUS_2             2              31
  CLUS_3             2              41
D6V5, multiclass
        clus
vv       STK11 MUTATED STK11 WILD-TYPE
  CLUS_1             6              67
  CLUS_2             4              19
  CLUS_3             4              35
D6V6, multiclass
        clus
vv       STK11 MUTATED STK11 WILD-TYPE
  CLUS_1             5              72
  CLUS_2             5              21
  CLUS_3             4              28
D6V7, multiclass
        clus
vv       STK11 MUTATED STK11 WILD-TYPE
  CLUS_1             6              43
  CLUS_2             2              67
  CLUS_3            11              42
D6V8, multiclass
        clus
vv       STK11 MUTATED STK11 WILD-TYPE
  CLUS_1             0              50
  CLUS_2             9              59
  CLUS_3            10              43
D6V9, multiclass
        clus
vv       STK11 MUTATED STK11 WILD-TYPE
  CLUS_1             7              52
  CLUS_2             7              73
  CLUS_3             4              25
D6V10, multiclass
        clus
vv       STK11 MUTATED STK11 WILD-TYPE
  CLUS_1             0              20
  CLUS_2            11              80
  CLUS_3             7              50
D6V11, multiclass
        clus
vv       STK11 MUTATED STK11 WILD-TYPE
  CLUS_1             6              40
  CLUS_2             1              34
  CLUS_3             3              21
D6V12, multiclass
        clus
vv       STK11 MUTATED STK11 WILD-TYPE
  CLUS_1             1              10
  CLUS_2             3              43
  CLUS_3             6              42

Clustering(7) Variable = KEAP1 MUTATION ANALYSIS
D7V1, multiclass
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  CLUS_1             0               5
  CLUS_2             0               9
  CLUS_3             3               9
  CLUS_4             1               5
D7V2, multiclass
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  CLUS_1             1               6
  CLUS_2             3              10
  CLUS_3             0              12
D7V3, multiclass
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  CLUS_1             7              63
  CLUS_2            15              53
  CLUS_3            10              24
D7V4, multiclass
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  CLUS_1             8              26
  CLUS_2             4              29
  CLUS_3             6              37
D7V5, multiclass
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  CLUS_1             9              64
  CLUS_2             7              16
  CLUS_3             9              30
D7V6, multiclass
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  CLUS_1             9              68
  CLUS_2             7              19
  CLUS_3             9              23
D7V7, multiclass
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  CLUS_1             8              41
  CLUS_2             6              63
  CLUS_3            18              35
D7V8, multiclass
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  CLUS_1             3              47
  CLUS_2             9              59
  CLUS_3            20              33
D7V9, multiclass
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  CLUS_1            11              48
  CLUS_2            13              67
  CLUS_3             5              24
D7V10, multiclass
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  CLUS_1             1              19
  CLUS_2            19              72
  CLUS_3             9              48
D7V11, multiclass
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  CLUS_1            10              36
  CLUS_2             6              29
  CLUS_3             3              21
D7V12, multiclass
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             9              37
  CLUS_3            10              38

Clustering(8) Variable = CRIPAK MUTATION ANALYSIS
D8V1, multiclass
[1] "Remove cluster labels:" "CRIPAK MUTATED"        
clus
  CRIPAK MUTATED CRIPAK WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-3398       TCGA-44-3918 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
D8V2, multiclass
[1] "Remove cluster labels:" "CRIPAK MUTATED"        
clus
  CRIPAK MUTATED CRIPAK WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-3398       TCGA-44-3918 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" "CRIPAK WILD-TYPE" 
D8V3, multiclass
        clus
vv       CRIPAK MUTATED CRIPAK WILD-TYPE
  CLUS_1              5               65
  CLUS_2              5               63
  CLUS_3              2               32
D8V4, multiclass
        clus
vv       CRIPAK MUTATED CRIPAK WILD-TYPE
  CLUS_1              5               29
  CLUS_2              1               32
  CLUS_3              3               40
D8V5, multiclass
        clus
vv       CRIPAK MUTATED CRIPAK WILD-TYPE
  CLUS_1              4               69
  CLUS_2              2               21
  CLUS_3              5               34
D8V6, multiclass
        clus
vv       CRIPAK MUTATED CRIPAK WILD-TYPE
  CLUS_1              5               72
  CLUS_2              2               24
  CLUS_3              4               28
D8V7, multiclass
        clus
vv       CRIPAK MUTATED CRIPAK WILD-TYPE
  CLUS_1              2               47
  CLUS_2              5               64
  CLUS_3              5               48
D8V8, multiclass
        clus
vv       CRIPAK MUTATED CRIPAK WILD-TYPE
  CLUS_1              4               46
  CLUS_2              5               63
  CLUS_3              3               50
D8V9, multiclass
        clus
vv       CRIPAK MUTATED CRIPAK WILD-TYPE
  CLUS_1              3               56
  CLUS_2              7               73
  CLUS_3              2               27
D8V10, multiclass
        clus
vv       CRIPAK MUTATED CRIPAK WILD-TYPE
  CLUS_1              0               20
  CLUS_2              8               83
  CLUS_3              4               53
D8V11, multiclass
        clus
vv       CRIPAK MUTATED CRIPAK WILD-TYPE
  CLUS_1              3               43
  CLUS_2              5               30
  CLUS_3              1               23
D8V12, multiclass
        clus
vv       CRIPAK MUTATED CRIPAK WILD-TYPE
  CLUS_1              0               11
  CLUS_2              6               40
  CLUS_3              3               45

Clustering(9) Variable = RBM10 MUTATION ANALYSIS
D9V1, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             0               5
  CLUS_2             1               8
  CLUS_3             4               8
  CLUS_4             0               6
D9V2, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             4               9
  CLUS_3             1              11
D9V3, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             4              66
  CLUS_2             5              63
  CLUS_3             3              31
D9V4, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             1              33
  CLUS_2             3              30
  CLUS_3             0              43
D9V5, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             3              70
  CLUS_2             1              22
  CLUS_3             2              37
D9V6, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             3              74
  CLUS_2             2              24
  CLUS_3             1              31
D9V7, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             4              45
  CLUS_2             5              64
  CLUS_3             3              50
D9V8, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             4              46
  CLUS_2             4              64
  CLUS_3             4              49
D9V9, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             5              54
  CLUS_2             6              74
  CLUS_3             1              28
D9V10, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             1              19
  CLUS_2             7              84
  CLUS_3             4              53
D9V11, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             1              34
  CLUS_3             0              24
D9V12, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             3              43
  CLUS_3             0              48

Clustering(10) Variable = NF1 MUTATION ANALYSIS
D10V1, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           0             5
  CLUS_2           2             7
  CLUS_3           2            10
  CLUS_4           1             5
D10V2, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           1             6
  CLUS_2           3            10
  CLUS_3           1            11
D10V3, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1          14            56
  CLUS_2           4            64
  CLUS_3           3            31
D10V4, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           6            28
  CLUS_2           7            26
  CLUS_3           4            39
D10V5, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1          11            62
  CLUS_2           3            20
  CLUS_3           4            35
D10V6, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1          10            67
  CLUS_2           3            23
  CLUS_3           5            27
D10V7, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           3            46
  CLUS_2          12            57
  CLUS_3           5            48
D10V8, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           8            42
  CLUS_2           5            63
  CLUS_3           7            46
D10V9, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           4            55
  CLUS_2          10            70
  CLUS_3           7            22
D10V10, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           3            17
  CLUS_2          14            77
  CLUS_3           4            53
D10V11, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           4            42
  CLUS_2           4            31
  CLUS_3           7            17
D10V12, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           1            10
  CLUS_2           9            37
  CLUS_3           5            43

Clustering(11) Variable = GPR112 MUTATION ANALYSIS
D11V1, multiclass
        clus
vv       GPR112 MUTATED GPR112 WILD-TYPE
  CLUS_1              1                4
  CLUS_2              3                6
  CLUS_3              2               10
  CLUS_4              0                6
D11V2, multiclass
        clus
vv       GPR112 MUTATED GPR112 WILD-TYPE
  CLUS_1              0                7
  CLUS_2              3               10
  CLUS_3              3                9
D11V3, multiclass
        clus
vv       GPR112 MUTATED GPR112 WILD-TYPE
  CLUS_1             16               54
  CLUS_2             11               57
  CLUS_3              8               26
D11V4, multiclass
        clus
vv       GPR112 MUTATED GPR112 WILD-TYPE
  CLUS_1              6               28
  CLUS_2             10               23
  CLUS_3              7               36
D11V5, multiclass
        clus
vv       GPR112 MUTATED GPR112 WILD-TYPE
  CLUS_1             17               56
  CLUS_2              4               19
  CLUS_3              4               35
D11V6, multiclass
        clus
vv       GPR112 MUTATED GPR112 WILD-TYPE
  CLUS_1             17               60
  CLUS_2              4               22
  CLUS_3              4               28
D11V7, multiclass
        clus
vv       GPR112 MUTATED GPR112 WILD-TYPE
  CLUS_1              5               44
  CLUS_2             18               51
  CLUS_3             12               41
D11V8, multiclass
        clus
vv       GPR112 MUTATED GPR112 WILD-TYPE
  CLUS_1             11               39
  CLUS_2             11               57
  CLUS_3             13               40
D11V9, multiclass
        clus
vv       GPR112 MUTATED GPR112 WILD-TYPE
  CLUS_1             12               47
  CLUS_2             18               62
  CLUS_3              4               25
D11V10, multiclass
        clus
vv       GPR112 MUTATED GPR112 WILD-TYPE
  CLUS_1              2               18
  CLUS_2             20               71
  CLUS_3             12               45
D11V11, multiclass
        clus
vv       GPR112 MUTATED GPR112 WILD-TYPE
  CLUS_1             11               35
  CLUS_2              9               26
  CLUS_3              2               22
D11V12, multiclass
        clus
vv       GPR112 MUTATED GPR112 WILD-TYPE
  CLUS_1              0               11
  CLUS_2             12               34
  CLUS_3             10               38

Clustering(12) Variable = FLG MUTATION ANALYSIS
D12V1, multiclass
        clus
vv       FLG MUTATED FLG WILD-TYPE
  CLUS_1           0             5
  CLUS_2           5             4
  CLUS_3           3             9
  CLUS_4           3             3
D12V2, multiclass
        clus
vv       FLG MUTATED FLG WILD-TYPE
  CLUS_1           3             4
  CLUS_2           4             9
  CLUS_3           4             8
D12V3, multiclass
        clus
vv       FLG MUTATED FLG WILD-TYPE
  CLUS_1          21            49
  CLUS_2          13            55
  CLUS_3          10            24
D12V4, multiclass
        clus
vv       FLG MUTATED FLG WILD-TYPE
  CLUS_1           5            29
  CLUS_2          12            21
  CLUS_3          12            31
D12V5, multiclass
        clus
vv       FLG MUTATED FLG WILD-TYPE
  CLUS_1          18            55
  CLUS_2           5            18
  CLUS_3          14            25
D12V6, multiclass
        clus
vv       FLG MUTATED FLG WILD-TYPE
  CLUS_1          21            56
  CLUS_2           5            21
  CLUS_3          11            21
D12V7, multiclass
        clus
vv       FLG MUTATED FLG WILD-TYPE
  CLUS_1           9            40
  CLUS_2          19            50
  CLUS_3          16            37
D12V8, multiclass
        clus
vv       FLG MUTATED FLG WILD-TYPE
  CLUS_1          12            38
  CLUS_2          15            53
  CLUS_3          17            36
D12V9, multiclass
        clus
vv       FLG MUTATED FLG WILD-TYPE
  CLUS_1          11            48
  CLUS_2          23            57
  CLUS_3           9            20
D12V10, multiclass
        clus
vv       FLG MUTATED FLG WILD-TYPE
  CLUS_1           4            16
  CLUS_2          28            63
  CLUS_3          11            46
D12V11, multiclass
        clus
vv       FLG MUTATED FLG WILD-TYPE
  CLUS_1          12            34
  CLUS_2           9            26
  CLUS_3           4            20
D12V12, multiclass
        clus
vv       FLG MUTATED FLG WILD-TYPE
  CLUS_1           1            10
  CLUS_2          12            34
  CLUS_3          12            36

Clustering(13) Variable = SMARCA4 MUTATION ANALYSIS
D13V1, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               1                 8
  CLUS_3               0                12
  CLUS_4               2                 4
D13V2, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1               2                 5
  CLUS_2               1                12
  CLUS_3               0                12
D13V3, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1               6                64
  CLUS_2               4                64
  CLUS_3               4                30
D13V4, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1               6                28
  CLUS_2               2                31
  CLUS_3               3                40
D13V5, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1               6                67
  CLUS_2               2                21
  CLUS_3               4                35
D13V6, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1               5                72
  CLUS_2               3                23
  CLUS_3               4                28
D13V7, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1               1                48
  CLUS_2               3                66
  CLUS_3              10                43
D13V8, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1               2                48
  CLUS_2               1                67
  CLUS_3              11                42
D13V9, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1               1                58
  CLUS_2              10                70
  CLUS_3               3                26
D13V10, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1               1                19
  CLUS_2              12                79
  CLUS_3               1                56
D13V11, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1               1                45
  CLUS_2               5                30
  CLUS_3               4                20
D13V12, multiclass
        clus
vv       SMARCA4 MUTATED SMARCA4 WILD-TYPE
  CLUS_1               1                10
  CLUS_2               8                38
  CLUS_3               1                47

Clustering(14) Variable = HRNR MUTATION ANALYSIS
D14V1, multiclass
        clus
vv       HRNR MUTATED HRNR WILD-TYPE
  CLUS_1            0              5
  CLUS_2            3              6
  CLUS_3            1             11
  CLUS_4            0              6
D14V2, multiclass
        clus
vv       HRNR MUTATED HRNR WILD-TYPE
  CLUS_1            0              7
  CLUS_2            1             12
  CLUS_3            3              9
D14V3, multiclass
        clus
vv       HRNR MUTATED HRNR WILD-TYPE
  CLUS_1            9             61
  CLUS_2            9             59
  CLUS_3            7             27
D14V4, multiclass
        clus
vv       HRNR MUTATED HRNR WILD-TYPE
  CLUS_1            4             30
  CLUS_2            6             27
  CLUS_3            6             37
D14V5, multiclass
        clus
vv       HRNR MUTATED HRNR WILD-TYPE
  CLUS_1           11             62
  CLUS_2            3             20
  CLUS_3            6             33
D14V6, multiclass
        clus
vv       HRNR MUTATED HRNR WILD-TYPE
  CLUS_1           11             66
  CLUS_2            4             22
  CLUS_3            5             27
D14V7, multiclass
        clus
vv       HRNR MUTATED HRNR WILD-TYPE
  CLUS_1            3             46
  CLUS_2           15             54
  CLUS_3            7             46
D14V8, multiclass
        clus
vv       HRNR MUTATED HRNR WILD-TYPE
  CLUS_1           11             39
  CLUS_2            5             63
  CLUS_3            9             44
D14V9, multiclass
        clus
vv       HRNR MUTATED HRNR WILD-TYPE
  CLUS_1            8             51
  CLUS_2           12             68
  CLUS_3            4             25
D14V10, multiclass
        clus
vv       HRNR MUTATED HRNR WILD-TYPE
  CLUS_1            1             19
  CLUS_2           16             75
  CLUS_3            7             50
D14V11, multiclass
        clus
vv       HRNR MUTATED HRNR WILD-TYPE
  CLUS_1            7             39
  CLUS_2            4             31
  CLUS_3            3             21
D14V12, multiclass
        clus
vv       HRNR MUTATED HRNR WILD-TYPE
  CLUS_1            1             10
  CLUS_2            6             40
  CLUS_3            7             41

Clustering(15) Variable = MUC7 MUTATION ANALYSIS
D15V1, multiclass
[1] "Remove cluster labels:" "MUC7 MUTATED"          
clus
  MUC7 MUTATED MUC7 WILD-TYPE 
             2             30 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-35-4123     TCGA-44-2655     TCGA-44-2656     TCGA-44-2657 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-2659     TCGA-44-2661     TCGA-44-2662     TCGA-44-2665 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-2666     TCGA-44-2668     TCGA-44-3398     TCGA-44-3918 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-55-1594     TCGA-55-1595 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-55-1596     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-64-1680     TCGA-67-3770     TCGA-67-3771     TCGA-67-3772 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-67-3773     TCGA-67-3774 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
D15V2, multiclass
[1] "Remove cluster labels:" "MUC7 MUTATED"          
clus
  MUC7 MUTATED MUC7 WILD-TYPE 
             2             30 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-35-4123     TCGA-44-2655     TCGA-44-2656     TCGA-44-2657 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-2659     TCGA-44-2661     TCGA-44-2662     TCGA-44-2665 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-2666     TCGA-44-2668     TCGA-44-3398     TCGA-44-3918 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-55-1594     TCGA-55-1595 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-55-1596     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-64-1680     TCGA-67-3770     TCGA-67-3771     TCGA-67-3772 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
    TCGA-67-3773     TCGA-67-3774 
"MUC7 WILD-TYPE" "MUC7 WILD-TYPE" 
D15V3, multiclass
        clus
vv       MUC7 MUTATED MUC7 WILD-TYPE
  CLUS_1            4             66
  CLUS_2            4             64
  CLUS_3            7             27
D15V4, multiclass
        clus
vv       MUC7 MUTATED MUC7 WILD-TYPE
  CLUS_1            6             28
  CLUS_2            2             31
  CLUS_3            3             40
D15V5, multiclass
        clus
vv       MUC7 MUTATED MUC7 WILD-TYPE
  CLUS_1            6             67
  CLUS_2            1             22
  CLUS_3            5             34
D15V6, multiclass
        clus
vv       MUC7 MUTATED MUC7 WILD-TYPE
  CLUS_1            7             70
  CLUS_2            1             25
  CLUS_3            4             28
D15V7, multiclass
        clus
vv       MUC7 MUTATED MUC7 WILD-TYPE
  CLUS_1            1             48
  CLUS_2            4             65
  CLUS_3           10             43
D15V8, multiclass
        clus
vv       MUC7 MUTATED MUC7 WILD-TYPE
  CLUS_1            2             48
  CLUS_2            1             67
  CLUS_3           12             41
D15V9, multiclass
        clus
vv       MUC7 MUTATED MUC7 WILD-TYPE
  CLUS_1            2             57
  CLUS_2            9             71
  CLUS_3            4             25
D15V10, multiclass
        clus
vv       MUC7 MUTATED MUC7 WILD-TYPE
  CLUS_1            0             20
  CLUS_2           12             79
  CLUS_3            3             54
D15V11, multiclass
        clus
vv       MUC7 MUTATED MUC7 WILD-TYPE
  CLUS_1            3             43
  CLUS_2            6             29
  CLUS_3            2             22
D15V12, multiclass
        clus
vv       MUC7 MUTATED MUC7 WILD-TYPE
  CLUS_1            0             11
  CLUS_2           10             36
  CLUS_3            1             47

Clustering(16) Variable = COL11A1 MUTATION ANALYSIS
D16V1, multiclass
        clus
vv       COL11A1 MUTATED COL11A1 WILD-TYPE
  CLUS_1               1                 4
  CLUS_2               1                 8
  CLUS_3               3                 9
  CLUS_4               4                 2
D16V2, multiclass
        clus
vv       COL11A1 MUTATED COL11A1 WILD-TYPE
  CLUS_1               5                 2
  CLUS_2               4                 9
  CLUS_3               0                12
D16V3, multiclass
        clus
vv       COL11A1 MUTATED COL11A1 WILD-TYPE
  CLUS_1              14                56
  CLUS_2              11                57
  CLUS_3               9                25
D16V4, multiclass
        clus
vv       COL11A1 MUTATED COL11A1 WILD-TYPE
  CLUS_1               5                29
  CLUS_2               9                24
  CLUS_3               5                38
D16V5, multiclass
        clus
vv       COL11A1 MUTATED COL11A1 WILD-TYPE
  CLUS_1              15                58
  CLUS_2               2                21
  CLUS_3               9                30
D16V6, multiclass
        clus
vv       COL11A1 MUTATED COL11A1 WILD-TYPE
  CLUS_1              15                62
  CLUS_2               5                21
  CLUS_3               6                26
D16V7, multiclass
        clus
vv       COL11A1 MUTATED COL11A1 WILD-TYPE
  CLUS_1               4                45
  CLUS_2              17                52
  CLUS_3              13                40
D16V8, multiclass
        clus
vv       COL11A1 MUTATED COL11A1 WILD-TYPE
  CLUS_1              12                38
  CLUS_2               8                60
  CLUS_3              14                39
D16V9, multiclass
        clus
vv       COL11A1 MUTATED COL11A1 WILD-TYPE
  CLUS_1               6                53
  CLUS_2              22                58
  CLUS_3               4                25
D16V10, multiclass
        clus
vv       COL11A1 MUTATED COL11A1 WILD-TYPE
  CLUS_1               1                19
  CLUS_2              24                67
  CLUS_3               7                50
D16V11, multiclass
        clus
vv       COL11A1 MUTATED COL11A1 WILD-TYPE
  CLUS_1               6                40
  CLUS_2               9                26
  CLUS_3               3                21
D16V12, multiclass
        clus
vv       COL11A1 MUTATED COL11A1 WILD-TYPE
  CLUS_1               1                10
  CLUS_2              12                34
  CLUS_3               5                43

Clustering(17) Variable = BRAF MUTATION ANALYSIS
D17V1, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            0              5
  CLUS_2            3              6
  CLUS_3            1             11
  CLUS_4            0              6
D17V2, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            0              7
  CLUS_2            1             12
  CLUS_3            3              9
D17V3, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            5             65
  CLUS_2            6             62
  CLUS_3            4             30
D17V4, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            2             32
  CLUS_2            4             29
  CLUS_3            5             38
D17V5, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            5             68
  CLUS_2            1             22
  CLUS_3            3             36
D17V6, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            6             71
  CLUS_2            1             25
  CLUS_3            2             30
D17V7, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            5             44
  CLUS_2            8             61
  CLUS_3            2             51
D17V8, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            7             43
  CLUS_2            5             63
  CLUS_3            3             50
D17V9, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            6             53
  CLUS_2            5             75
  CLUS_3            4             25
D17V10, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            2             18
  CLUS_2            7             84
  CLUS_3            6             51
D17V11, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            5             41
  CLUS_2            2             33
  CLUS_3            2             22
D17V12, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            1             10
  CLUS_2            2             44
  CLUS_3            6             42

Clustering(18) Variable = U2AF1 MUTATION ANALYSIS
D18V1, multiclass
[1] "Remove cluster labels:" "U2AF1 MUTATED"         
clus
  U2AF1 MUTATED U2AF1 WILD-TYPE 
              2              30 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2666      TCGA-44-2668      TCGA-44-3398 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-3918      TCGA-44-3919      TCGA-44-4112      TCGA-55-1592 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-64-1678      TCGA-67-3770      TCGA-67-3771      TCGA-67-3772 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-67-3773      TCGA-67-3774 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
D18V2, multiclass
[1] "Remove cluster labels:" "U2AF1 MUTATED"         
clus
  U2AF1 MUTATED U2AF1 WILD-TYPE 
              2              30 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2666      TCGA-44-2668      TCGA-44-3398 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-44-3918      TCGA-44-3919      TCGA-44-4112      TCGA-55-1592 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-64-1678      TCGA-67-3770      TCGA-67-3771      TCGA-67-3772 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
     TCGA-67-3773      TCGA-67-3774 
"U2AF1 WILD-TYPE" "U2AF1 WILD-TYPE" 
D18V3, multiclass
        clus
vv       U2AF1 MUTATED U2AF1 WILD-TYPE
  CLUS_1             2              68
  CLUS_2             3              65
  CLUS_3             1              33
D18V4, multiclass
        clus
vv       U2AF1 MUTATED U2AF1 WILD-TYPE
  CLUS_1             0              34
  CLUS_2             0              33
  CLUS_3             3              40
D18V5, multiclass
        clus
vv       U2AF1 MUTATED U2AF1 WILD-TYPE
  CLUS_1             3              70
  CLUS_2             2              21
  CLUS_3             0              39
D18V6, multiclass
        clus
vv       U2AF1 MUTATED U2AF1 WILD-TYPE
  CLUS_1             4              73
  CLUS_2             1              25
  CLUS_3             0              32
D18V7, multiclass
        clus
vv       U2AF1 MUTATED U2AF1 WILD-TYPE
  CLUS_1             1              48
  CLUS_2             4              65
  CLUS_3             1              52
D18V8, multiclass
        clus
vv       U2AF1 MUTATED U2AF1 WILD-TYPE
  CLUS_1             3              47
  CLUS_2             2              66
  CLUS_3             1              52
D18V9, multiclass
        clus
vv       U2AF1 MUTATED U2AF1 WILD-TYPE
  CLUS_1             4              55
  CLUS_2             2              78
  CLUS_3             0              29
D18V10, multiclass
        clus
vv       U2AF1 MUTATED U2AF1 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             1              90
  CLUS_3             5              52
D18V11, multiclass
        clus
vv       U2AF1 MUTATED U2AF1 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             1              34
  CLUS_3             0              24
D18V12, multiclass
        clus
vv       U2AF1 MUTATED U2AF1 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             1              45
  CLUS_3             2              46

Clustering(19) Variable = PCK1 MUTATION ANALYSIS
D19V1, multiclass
        clus
vv       PCK1 MUTATED PCK1 WILD-TYPE
  CLUS_1            0              5
  CLUS_2            1              8
  CLUS_3            1             11
  CLUS_4            2              4
D19V2, multiclass
        clus
vv       PCK1 MUTATED PCK1 WILD-TYPE
  CLUS_1            2              5
  CLUS_2            1             12
  CLUS_3            1             11
D19V3, multiclass
        clus
vv       PCK1 MUTATED PCK1 WILD-TYPE
  CLUS_1            3             67
  CLUS_2            3             65
  CLUS_3            4             30
D19V4, multiclass
        clus
vv       PCK1 MUTATED PCK1 WILD-TYPE
  CLUS_1            0             34
  CLUS_2            5             28
  CLUS_3            1             42
D19V5, multiclass
        clus
vv       PCK1 MUTATED PCK1 WILD-TYPE
  CLUS_1            4             69
  CLUS_2            0             23
  CLUS_3            2             37
D19V6, multiclass
        clus
vv       PCK1 MUTATED PCK1 WILD-TYPE
  CLUS_1            3             74
  CLUS_2            1             25
  CLUS_3            2             30
D19V7, multiclass
        clus
vv       PCK1 MUTATED PCK1 WILD-TYPE
  CLUS_1            2             47
  CLUS_2            6             63
  CLUS_3            2             51
D19V8, multiclass
        clus
vv       PCK1 MUTATED PCK1 WILD-TYPE
  CLUS_1            3             47
  CLUS_2            5             63
  CLUS_3            2             51
D19V9, multiclass
        clus
vv       PCK1 MUTATED PCK1 WILD-TYPE
  CLUS_1            3             56
  CLUS_2            7             73
  CLUS_3            0             29
D19V10, multiclass
        clus
vv       PCK1 MUTATED PCK1 WILD-TYPE
  CLUS_1            1             19
  CLUS_2            6             85
  CLUS_3            3             54
D19V11, multiclass
        clus
vv       PCK1 MUTATED PCK1 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            4             31
  CLUS_3            0             24
D19V12, multiclass
        clus
vv       PCK1 MUTATED PCK1 WILD-TYPE
  CLUS_1            0             11
  CLUS_2            3             43
  CLUS_3            3             45

Clustering(20) Variable = CSMD3 MUTATION ANALYSIS
D20V1, multiclass
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  CLUS_1             2               3
  CLUS_2             6               3
  CLUS_3             2              10
  CLUS_4             5               1
D20V2, multiclass
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  CLUS_1             6               1
  CLUS_2             3              10
  CLUS_3             6               6
D20V3, multiclass
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  CLUS_1            37              33
  CLUS_2            23              45
  CLUS_3            18              16
D20V4, multiclass
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  CLUS_1            13              21
  CLUS_2            20              13
  CLUS_3            22              21
D20V5, multiclass
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  CLUS_1            35              38
  CLUS_2             7              16
  CLUS_3            20              19
D20V6, multiclass
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  CLUS_1            38              39
  CLUS_2             7              19
  CLUS_3            17              15
D20V7, multiclass
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  CLUS_1            10              39
  CLUS_2            37              32
  CLUS_3            30              23
D20V8, multiclass
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  CLUS_1            29              21
  CLUS_2            18              50
  CLUS_3            30              23
D20V9, multiclass
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  CLUS_1            17              42
  CLUS_2            42              38
  CLUS_3            16              13
D20V10, multiclass
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  CLUS_1             6              14
  CLUS_2            48              43
  CLUS_3            21              36
D20V11, multiclass
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  CLUS_1            20              26
  CLUS_2            21              14
  CLUS_3            10              14
D20V12, multiclass
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  CLUS_1             3               8
  CLUS_2            27              19
  CLUS_3            21              27

Clustering(21) Variable = RIMS2 MUTATION ANALYSIS
D21V1, multiclass
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  CLUS_1             0               5
  CLUS_2             2               7
  CLUS_3             1              11
  CLUS_4             3               3
D21V2, multiclass
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  CLUS_1             3               4
  CLUS_2             2              11
  CLUS_3             1              11
D21V3, multiclass
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  CLUS_1             9              61
  CLUS_2            12              56
  CLUS_3            11              23
D21V4, multiclass
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  CLUS_1             4              30
  CLUS_2            10              23
  CLUS_3             7              36
D21V5, multiclass
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  CLUS_1            11              62
  CLUS_2             6              17
  CLUS_3             6              33
D21V6, multiclass
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  CLUS_1            12              65
  CLUS_2             6              20
  CLUS_3             5              27
D21V7, multiclass
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  CLUS_1             5              44
  CLUS_2            17              52
  CLUS_3            10              43
D21V8, multiclass
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  CLUS_1            13              37
  CLUS_2             7              61
  CLUS_3            12              41
D21V9, multiclass
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  CLUS_1             6              53
  CLUS_2            18              62
  CLUS_3             7              22
D21V10, multiclass
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  CLUS_1             2              18
  CLUS_2            22              69
  CLUS_3             7              50
D21V11, multiclass
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  CLUS_1             4              42
  CLUS_2            11              24
  CLUS_3             5              19
D21V12, multiclass
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  CLUS_1             1              10
  CLUS_2            14              32
  CLUS_3             5              43

Clustering(22) Variable = FTSJD1 MUTATION ANALYSIS
D22V1, multiclass
[1] "Remove cluster labels:" "FTSJD1 MUTATED"        
clus
  FTSJD1 MUTATED FTSJD1 WILD-TYPE 
               2               30 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3918 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-3919       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-55-1596       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-64-1680       TCGA-67-3770       TCGA-67-3771       TCGA-67-3772 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
D22V2, multiclass
[1] "Remove cluster labels:" "FTSJD1 MUTATED"        
clus
  FTSJD1 MUTATED FTSJD1 WILD-TYPE 
               2               30 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3918 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-3919       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-55-1596       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-64-1680       TCGA-67-3770       TCGA-67-3771       TCGA-67-3772 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
D22V3, multiclass
        clus
vv       FTSJD1 MUTATED FTSJD1 WILD-TYPE
  CLUS_1              2               68
  CLUS_2              3               65
  CLUS_3              1               33
D22V4, multiclass
        clus
vv       FTSJD1 MUTATED FTSJD1 WILD-TYPE
  CLUS_1              0               34
  CLUS_2              3               30
  CLUS_3              0               43
D22V5, multiclass
        clus
vv       FTSJD1 MUTATED FTSJD1 WILD-TYPE
  CLUS_1              1               72
  CLUS_2              2               21
  CLUS_3              3               36
D22V6, multiclass
        clus
vv       FTSJD1 MUTATED FTSJD1 WILD-TYPE
  CLUS_1              2               75
  CLUS_2              2               24
  CLUS_3              2               30
D22V7, multiclass
        clus
vv       FTSJD1 MUTATED FTSJD1 WILD-TYPE
  CLUS_1              0               49
  CLUS_2              4               65
  CLUS_3              2               51
D22V8, multiclass
        clus
vv       FTSJD1 MUTATED FTSJD1 WILD-TYPE
  CLUS_1              3               47
  CLUS_2              2               66
  CLUS_3              1               52
D22V9, multiclass
        clus
vv       FTSJD1 MUTATED FTSJD1 WILD-TYPE
  CLUS_1              2               57
  CLUS_2              3               77
  CLUS_3              1               28
D22V10, multiclass
        clus
vv       FTSJD1 MUTATED FTSJD1 WILD-TYPE
  CLUS_1              1               19
  CLUS_2              3               88
  CLUS_3              2               55
D22V11, multiclass
[1] "Remove cluster labels:" "FTSJD1 MUTATED"        
clus
  FTSJD1 MUTATED FTSJD1 WILD-TYPE 
               2              103 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4405       TCGA-05-4410 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4424       TCGA-05-4425 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4433       TCGA-05-5420       TCGA-05-5423 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-5425       TCGA-05-5428       TCGA-05-5429       TCGA-05-5715 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-35-5375       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-5643       TCGA-44-5645       TCGA-44-6144       TCGA-44-6145 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-6146       TCGA-44-6147       TCGA-44-6148       TCGA-44-6774 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-6775       TCGA-44-6776       TCGA-44-6777       TCGA-44-6778 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-6779       TCGA-49-4487       TCGA-49-4488       TCGA-49-4490 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-49-6767       TCGA-50-5044 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-4679 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-73-4676       TCGA-75-5122       TCGA-75-5125       TCGA-75-5126 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-75-5146       TCGA-75-5147       TCGA-75-6203       TCGA-75-6205 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-75-6206       TCGA-75-6207       TCGA-75-6211       TCGA-75-6212 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-80-5611       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
D22V12, multiclass
[1] "Remove cluster labels:" "FTSJD1 MUTATED"        
clus
  FTSJD1 MUTATED FTSJD1 WILD-TYPE 
               2              103 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4405       TCGA-05-4410 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4424       TCGA-05-4425 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4433       TCGA-05-5420       TCGA-05-5423 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-05-5425       TCGA-05-5428       TCGA-05-5429       TCGA-05-5715 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-35-5375       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-5643       TCGA-44-5645       TCGA-44-6144       TCGA-44-6145 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-6146       TCGA-44-6147       TCGA-44-6148       TCGA-44-6774 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-6775       TCGA-44-6776       TCGA-44-6777       TCGA-44-6778 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-44-6779       TCGA-49-4487       TCGA-49-4488       TCGA-49-4490 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-49-6767       TCGA-50-5044 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-4679 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-73-4676       TCGA-75-5122       TCGA-75-5125       TCGA-75-5126 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-75-5146       TCGA-75-5147       TCGA-75-6203       TCGA-75-6205 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-75-6206       TCGA-75-6207       TCGA-75-6211       TCGA-75-6212 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-80-5611       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" "FTSJD1 WILD-TYPE" 

Clustering(23) Variable = RB1 MUTATION ANALYSIS
D23V1, multiclass
D23V2, multiclass
D23V3, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           2            68
  CLUS_2           2            66
  CLUS_3           3            31
D23V4, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           3            31
  CLUS_2           1            32
  CLUS_3           2            41
D23V5, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           5            68
  CLUS_2           0            23
  CLUS_3           1            38
D23V6, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           5            72
  CLUS_2           0            26
  CLUS_3           1            31
D23V7, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           1            48
  CLUS_2           2            67
  CLUS_3           4            49
D23V8, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           1            49
  CLUS_2           1            67
  CLUS_3           5            48
D23V9, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           0            59
  CLUS_2           5            75
  CLUS_3           2            27
D23V10, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           1            19
  CLUS_2           6            85
  CLUS_3           0            57
D23V11, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           2            44
  CLUS_2           2            33
  CLUS_3           2            22
D23V12, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           0            11
  CLUS_2           4            42
  CLUS_3           2            46

Clustering(24) Variable = LRP1B MUTATION ANALYSIS
D24V1, multiclass
        clus
vv       LRP1B MUTATED LRP1B WILD-TYPE
  CLUS_1             1               4
  CLUS_2             5               4
  CLUS_3             4               8
  CLUS_4             4               2
D24V2, multiclass
        clus
vv       LRP1B MUTATED LRP1B WILD-TYPE
  CLUS_1             4               3
  CLUS_2             4               9
  CLUS_3             6               6
D24V3, multiclass
        clus
vv       LRP1B MUTATED LRP1B WILD-TYPE
  CLUS_1            22              48
  CLUS_2            25              43
  CLUS_3            14              20
D24V4, multiclass
        clus
vv       LRP1B MUTATED LRP1B WILD-TYPE
  CLUS_1             7              27
  CLUS_2            17              16
  CLUS_3            11              32
D24V5, multiclass
        clus
vv       LRP1B MUTATED LRP1B WILD-TYPE
  CLUS_1            24              49
  CLUS_2             8              15
  CLUS_3            16              23
D24V6, multiclass
        clus
vv       LRP1B MUTATED LRP1B WILD-TYPE
  CLUS_1            30              47
  CLUS_2             8              18
  CLUS_3            10              22
D24V7, multiclass
        clus
vv       LRP1B MUTATED LRP1B WILD-TYPE
  CLUS_1            11              38
  CLUS_2            31              38
  CLUS_3            19              34
D24V8, multiclass
        clus
vv       LRP1B MUTATED LRP1B WILD-TYPE
  CLUS_1            23              27
  CLUS_2            17              51
  CLUS_3            21              32
D24V9, multiclass
        clus
vv       LRP1B MUTATED LRP1B WILD-TYPE
  CLUS_1            17              42
  CLUS_2            32              48
  CLUS_3            10              19
D24V10, multiclass
        clus
vv       LRP1B MUTATED LRP1B WILD-TYPE
  CLUS_1             6              14
  CLUS_2            36              55
  CLUS_3            17              40
D24V11, multiclass
        clus
vv       LRP1B MUTATED LRP1B WILD-TYPE
  CLUS_1            15              31
  CLUS_2            12              23
  CLUS_3             6              18
D24V12, multiclass
        clus
vv       LRP1B MUTATED LRP1B WILD-TYPE
  CLUS_1             3               8
  CLUS_2            17              29
  CLUS_3            13              35

Clustering(25) Variable = RIT1 MUTATION ANALYSIS
D25V1, multiclass
[1] "Remove cluster labels:" "RIT1 MUTATED"          
clus
  RIT1 MUTATED RIT1 WILD-TYPE 
             1             31 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2656 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2659     TCGA-44-2661     TCGA-44-2662 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-2665     TCGA-44-2666     TCGA-44-2668     TCGA-44-3398 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-3918     TCGA-44-3919     TCGA-44-4112     TCGA-55-1592 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-55-1594     TCGA-55-1595     TCGA-64-1676     TCGA-64-1677 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-64-1678     TCGA-64-1680     TCGA-67-3770     TCGA-67-3771 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
D25V2, multiclass
[1] "Remove cluster labels:" "RIT1 MUTATED"          
clus
  RIT1 MUTATED RIT1 WILD-TYPE 
             1             31 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2656 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2659     TCGA-44-2661     TCGA-44-2662 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-2665     TCGA-44-2666     TCGA-44-2668     TCGA-44-3398 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-44-3918     TCGA-44-3919     TCGA-44-4112     TCGA-55-1592 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-55-1594     TCGA-55-1595     TCGA-64-1676     TCGA-64-1677 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-64-1678     TCGA-64-1680     TCGA-67-3770     TCGA-67-3771 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"RIT1 WILD-TYPE" "RIT1 WILD-TYPE" "RIT1 WILD-TYPE" 
D25V3, multiclass
        clus
vv       RIT1 MUTATED RIT1 WILD-TYPE
  CLUS_1            3             67
  CLUS_2            3             65
  CLUS_3            2             32
D25V4, multiclass
        clus
vv       RIT1 MUTATED RIT1 WILD-TYPE
  CLUS_1            1             33
  CLUS_2            3             30
  CLUS_3            1             42
D25V5, multiclass
        clus
vv       RIT1 MUTATED RIT1 WILD-TYPE
  CLUS_1            3             70
  CLUS_2            1             22
  CLUS_3            3             36
D25V6, multiclass
        clus
vv       RIT1 MUTATED RIT1 WILD-TYPE
  CLUS_1            2             75
  CLUS_2            3             23
  CLUS_3            2             30
D25V7, multiclass
        clus
vv       RIT1 MUTATED RIT1 WILD-TYPE
  CLUS_1            2             47
  CLUS_2            3             66
  CLUS_3            3             50
D25V8, multiclass
        clus
vv       RIT1 MUTATED RIT1 WILD-TYPE
  CLUS_1            2             48
  CLUS_2            3             65
  CLUS_3            3             50
D25V9, multiclass
        clus
vv       RIT1 MUTATED RIT1 WILD-TYPE
  CLUS_1            2             57
  CLUS_2            4             76
  CLUS_3            1             28
D25V10, multiclass
        clus
vv       RIT1 MUTATED RIT1 WILD-TYPE
  CLUS_1            1             19
  CLUS_2            4             87
  CLUS_3            2             55
D25V11, multiclass
        clus
vv       RIT1 MUTATED RIT1 WILD-TYPE
  CLUS_1            4             42
  CLUS_2            1             34
  CLUS_3            0             24
D25V12, multiclass
        clus
vv       RIT1 MUTATED RIT1 WILD-TYPE
  CLUS_1            0             11
  CLUS_2            1             45
  CLUS_3            4             44

Clustering(26) Variable = OR10J3 MUTATION ANALYSIS
D26V1, multiclass
[1] "Remove cluster labels:" "OR10J3 MUTATED"        
clus
  OR10J3 MUTATED OR10J3 WILD-TYPE 
               2               30 
      TCGA-05-4244       TCGA-05-4250       TCGA-35-3615       TCGA-35-4122 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-35-4123       TCGA-44-2655       TCGA-44-2656       TCGA-44-2657 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-44-2659       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3398       TCGA-44-3919 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-44-4112       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-55-1596       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-64-1680       TCGA-67-3770       TCGA-67-3771       TCGA-67-3772 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
D26V2, multiclass
[1] "Remove cluster labels:" "OR10J3 MUTATED"        
clus
  OR10J3 MUTATED OR10J3 WILD-TYPE 
               2               30 
      TCGA-05-4244       TCGA-05-4250       TCGA-35-3615       TCGA-35-4122 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-35-4123       TCGA-44-2655       TCGA-44-2656       TCGA-44-2657 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-44-2659       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3398       TCGA-44-3919 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-44-4112       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-55-1596       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-64-1680       TCGA-67-3770       TCGA-67-3771       TCGA-67-3772 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"OR10J3 WILD-TYPE" "OR10J3 WILD-TYPE" 
D26V3, multiclass
        clus
vv       OR10J3 MUTATED OR10J3 WILD-TYPE
  CLUS_1              2               68
  CLUS_2              5               63
  CLUS_3              2               32
D26V4, multiclass
        clus
vv       OR10J3 MUTATED OR10J3 WILD-TYPE
  CLUS_1              2               32
  CLUS_2              2               31
  CLUS_3              2               41
D26V5, multiclass
        clus
vv       OR10J3 MUTATED OR10J3 WILD-TYPE
  CLUS_1              4               69
  CLUS_2              1               22
  CLUS_3              2               37
D26V6, multiclass
        clus
vv       OR10J3 MUTATED OR10J3 WILD-TYPE
  CLUS_1              3               74
  CLUS_2              2               24
  CLUS_3              2               30
D26V7, multiclass
        clus
vv       OR10J3 MUTATED OR10J3 WILD-TYPE
  CLUS_1              4               45
  CLUS_2              2               67
  CLUS_3              3               50
D26V8, multiclass
        clus
vv       OR10J3 MUTATED OR10J3 WILD-TYPE
  CLUS_1              1               49
  CLUS_2              5               63
  CLUS_3              3               50
D26V9, multiclass
        clus
vv       OR10J3 MUTATED OR10J3 WILD-TYPE
  CLUS_1              1               58
  CLUS_2              5               75
  CLUS_3              2               27
D26V10, multiclass
        clus
vv       OR10J3 MUTATED OR10J3 WILD-TYPE
  CLUS_1              1               19
  CLUS_2              6               85
  CLUS_3              1               56
D26V11, multiclass
        clus
vv       OR10J3 MUTATED OR10J3 WILD-TYPE
  CLUS_1              4               42
  CLUS_2              1               34
  CLUS_3              0               24
D26V12, multiclass
        clus
vv       OR10J3 MUTATED OR10J3 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              2               44
  CLUS_3              3               45

Clustering(27) Variable = LTBP1 MUTATION ANALYSIS
D27V1, multiclass
        clus
vv       LTBP1 MUTATED LTBP1 WILD-TYPE
  CLUS_1             2               3
  CLUS_2             1               8
  CLUS_3             2              10
  CLUS_4             1               5
D27V2, multiclass
        clus
vv       LTBP1 MUTATED LTBP1 WILD-TYPE
  CLUS_1             2               5
  CLUS_2             3              10
  CLUS_3             1              11
D27V3, multiclass
        clus
vv       LTBP1 MUTATED LTBP1 WILD-TYPE
  CLUS_1            10              60
  CLUS_2             5              63
  CLUS_3             5              29
D27V4, multiclass
        clus
vv       LTBP1 MUTATED LTBP1 WILD-TYPE
  CLUS_1             2              32
  CLUS_2             7              26
  CLUS_3             4              39
D27V5, multiclass
        clus
vv       LTBP1 MUTATED LTBP1 WILD-TYPE
  CLUS_1             7              66
  CLUS_2             0              23
  CLUS_3             6              33
D27V6, multiclass
        clus
vv       LTBP1 MUTATED LTBP1 WILD-TYPE
  CLUS_1            10              67
  CLUS_2             1              25
  CLUS_3             2              30
D27V7, multiclass
        clus
vv       LTBP1 MUTATED LTBP1 WILD-TYPE
  CLUS_1             3              46
  CLUS_2            12              57
  CLUS_3             5              48
D27V8, multiclass
        clus
vv       LTBP1 MUTATED LTBP1 WILD-TYPE
  CLUS_1            10              40
  CLUS_2             4              64
  CLUS_3             6              47
D27V9, multiclass
        clus
vv       LTBP1 MUTATED LTBP1 WILD-TYPE
  CLUS_1             4              55
  CLUS_2            13              67
  CLUS_3             3              26
D27V10, multiclass
        clus
vv       LTBP1 MUTATED LTBP1 WILD-TYPE
  CLUS_1             1              19
  CLUS_2            15              76
  CLUS_3             4              53
D27V11, multiclass
        clus
vv       LTBP1 MUTATED LTBP1 WILD-TYPE
  CLUS_1             5              41
  CLUS_2             6              29
  CLUS_3             1              23
D27V12, multiclass
        clus
vv       LTBP1 MUTATED LTBP1 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             8              38
  CLUS_3             4              44

Clustering(28) Variable = SETD2 MUTATION ANALYSIS
D28V1, multiclass
[1] "Remove cluster labels:" "SETD2 MUTATED"         
clus
  SETD2 MUTATED SETD2 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
D28V2, multiclass
[1] "Remove cluster labels:" "SETD2 MUTATED"         
clus
  SETD2 MUTATED SETD2 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"SETD2 WILD-TYPE" "SETD2 WILD-TYPE" "SETD2 WILD-TYPE" 
D28V3, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             3              67
  CLUS_2             8              60
  CLUS_3             4              30
D28V4, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             1              33
  CLUS_2             6              27
  CLUS_3             7              36
D28V5, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             4              69
  CLUS_2             3              20
  CLUS_3             2              37
D28V6, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             5              72
  CLUS_2             4              22
  CLUS_3             0              32
D28V7, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             3              46
  CLUS_2             9              60
  CLUS_3             3              50
D28V8, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             6              44
  CLUS_2             8              60
  CLUS_3             1              52
D28V9, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             8              51
  CLUS_2             5              75
  CLUS_3             1              28
D28V10, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             2              18
  CLUS_2             4              87
  CLUS_3             8              49
D28V11, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             8              38
  CLUS_2             2              33
  CLUS_3             3              21
D28V12, multiclass
        clus
vv       SETD2 MUTATED SETD2 WILD-TYPE
  CLUS_1             2               9
  CLUS_2             3              43
  CLUS_3             8              40

Clustering(29) Variable = ZCCHC5 MUTATION ANALYSIS
D29V1, multiclass
D29V2, multiclass
D29V3, multiclass
        clus
vv       ZCCHC5 MUTATED ZCCHC5 WILD-TYPE
  CLUS_1              3               67
  CLUS_2              5               63
  CLUS_3              2               32
D29V4, multiclass
        clus
vv       ZCCHC5 MUTATED ZCCHC5 WILD-TYPE
  CLUS_1              2               32
  CLUS_2              4               29
  CLUS_3              0               43
D29V5, multiclass
        clus
vv       ZCCHC5 MUTATED ZCCHC5 WILD-TYPE
  CLUS_1              6               67
  CLUS_2              2               21
  CLUS_3              1               38
D29V6, multiclass
        clus
vv       ZCCHC5 MUTATED ZCCHC5 WILD-TYPE
  CLUS_1              5               72
  CLUS_2              2               24
  CLUS_3              2               30
D29V7, multiclass
        clus
vv       ZCCHC5 MUTATED ZCCHC5 WILD-TYPE
  CLUS_1              3               46
  CLUS_2              3               66
  CLUS_3              4               49
D29V8, multiclass
        clus
vv       ZCCHC5 MUTATED ZCCHC5 WILD-TYPE
  CLUS_1              3               47
  CLUS_2              5               63
  CLUS_3              2               51
D29V9, multiclass
        clus
vv       ZCCHC5 MUTATED ZCCHC5 WILD-TYPE
  CLUS_1              2               57
  CLUS_2              7               73
  CLUS_3              1               28
D29V10, multiclass
        clus
vv       ZCCHC5 MUTATED ZCCHC5 WILD-TYPE
  CLUS_1              2               18
  CLUS_2              7               84
  CLUS_3              1               56
D29V11, multiclass
        clus
vv       ZCCHC5 MUTATED ZCCHC5 WILD-TYPE
  CLUS_1              4               42
  CLUS_2              3               32
  CLUS_3              0               24
D29V12, multiclass
        clus
vv       ZCCHC5 MUTATED ZCCHC5 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              3               43
  CLUS_3              4               44

Clustering(30) Variable = ADAMTS5 MUTATION ANALYSIS
D30V1, multiclass
        clus
vv       ADAMTS5 MUTATED ADAMTS5 WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               1                 8
  CLUS_3               1                11
  CLUS_4               1                 5
D30V2, multiclass
        clus
vv       ADAMTS5 MUTATED ADAMTS5 WILD-TYPE
  CLUS_1               1                 6
  CLUS_2               1                12
  CLUS_3               1                11
D30V3, multiclass
        clus
vv       ADAMTS5 MUTATED ADAMTS5 WILD-TYPE
  CLUS_1               6                64
  CLUS_2               5                63
  CLUS_3               3                31
D30V4, multiclass
        clus
vv       ADAMTS5 MUTATED ADAMTS5 WILD-TYPE
  CLUS_1               2                32
  CLUS_2               2                31
  CLUS_3               2                41
D30V5, multiclass
        clus
vv       ADAMTS5 MUTATED ADAMTS5 WILD-TYPE
  CLUS_1               5                68
  CLUS_2               2                21
  CLUS_3               2                37
D30V6, multiclass
        clus
vv       ADAMTS5 MUTATED ADAMTS5 WILD-TYPE
  CLUS_1               4                73
  CLUS_2               3                23
  CLUS_3               2                30
D30V7, multiclass
        clus
vv       ADAMTS5 MUTATED ADAMTS5 WILD-TYPE
  CLUS_1               5                44
  CLUS_2               5                64
  CLUS_3               4                49
D30V8, multiclass
        clus
vv       ADAMTS5 MUTATED ADAMTS5 WILD-TYPE
  CLUS_1               2                48
  CLUS_2               8                60
  CLUS_3               4                49
D30V9, multiclass
        clus
vv       ADAMTS5 MUTATED ADAMTS5 WILD-TYPE
  CLUS_1               4                55
  CLUS_2               8                72
  CLUS_3               1                28
D30V10, multiclass
        clus
vv       ADAMTS5 MUTATED ADAMTS5 WILD-TYPE
  CLUS_1               2                18
  CLUS_2               9                82
  CLUS_3               2                55
D30V11, multiclass
        clus
vv       ADAMTS5 MUTATED ADAMTS5 WILD-TYPE
  CLUS_1               3                43
  CLUS_2               3                32
  CLUS_3               0                24
D30V12, multiclass
        clus
vv       ADAMTS5 MUTATED ADAMTS5 WILD-TYPE
  CLUS_1               0                11
  CLUS_2               3                43
  CLUS_3               3                45

Clustering(31) Variable = GBA3 MUTATION ANALYSIS
D31V1, multiclass
D31V2, multiclass
D31V3, multiclass
        clus
vv       GBA3 MUTATED GBA3 WILD-TYPE
  CLUS_1            3             67
  CLUS_2            4             64
  CLUS_3            1             33
D31V4, multiclass
        clus
vv       GBA3 MUTATED GBA3 WILD-TYPE
  CLUS_1            4             30
  CLUS_2            1             32
  CLUS_3            2             41
D31V5, multiclass
        clus
vv       GBA3 MUTATED GBA3 WILD-TYPE
  CLUS_1            2             71
  CLUS_2            1             22
  CLUS_3            3             36
D31V6, multiclass
        clus
vv       GBA3 MUTATED GBA3 WILD-TYPE
  CLUS_1            3             74
  CLUS_2            1             25
  CLUS_3            2             30
D31V7, multiclass
        clus
vv       GBA3 MUTATED GBA3 WILD-TYPE
  CLUS_1            1             48
  CLUS_2            3             66
  CLUS_3            4             49
D31V8, multiclass
        clus
vv       GBA3 MUTATED GBA3 WILD-TYPE
  CLUS_1            1             49
  CLUS_2            2             66
  CLUS_3            5             48
D31V9, multiclass
        clus
vv       GBA3 MUTATED GBA3 WILD-TYPE
  CLUS_1            2             57
  CLUS_2            3             77
  CLUS_3            2             27
D31V10, multiclass
        clus
vv       GBA3 MUTATED GBA3 WILD-TYPE
  CLUS_1            1             19
  CLUS_2            4             87
  CLUS_3            2             55
D31V11, multiclass
        clus
vv       GBA3 MUTATED GBA3 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            2             33
  CLUS_3            3             21
D31V12, multiclass
        clus
vv       GBA3 MUTATED GBA3 WILD-TYPE
  CLUS_1            1             10
  CLUS_2            4             42
  CLUS_3            2             46

Clustering(32) Variable = MYL10 MUTATION ANALYSIS
D32V1, multiclass
[1] "Remove cluster labels:" "MYL10 MUTATED"         
clus
  MYL10 MUTATED MYL10 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-35-3615      TCGA-35-4122 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-35-4123      TCGA-44-2655      TCGA-44-2656      TCGA-44-2657 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
D32V2, multiclass
[1] "Remove cluster labels:" "MYL10 MUTATED"         
clus
  MYL10 MUTATED MYL10 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-35-3615      TCGA-35-4122 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-35-4123      TCGA-44-2655      TCGA-44-2656      TCGA-44-2657 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
D32V3, multiclass
        clus
vv       MYL10 MUTATED MYL10 WILD-TYPE
  CLUS_1             1              69
  CLUS_2             2              66
  CLUS_3             2              32
D32V4, multiclass
[1] "Remove cluster labels:" "MYL10 MUTATED"         
clus
  MYL10 MUTATED MYL10 WILD-TYPE 
              1             109 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4396      TCGA-05-4405 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4410      TCGA-05-4415      TCGA-05-4417      TCGA-05-4424 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4425      TCGA-05-4427      TCGA-05-4433      TCGA-05-5420 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-5423      TCGA-05-5425      TCGA-05-5428      TCGA-05-5429 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-5715      TCGA-35-5375      TCGA-38-4631      TCGA-38-4632 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-38-6178      TCGA-44-2656      TCGA-44-2665      TCGA-44-2666 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3918      TCGA-44-4112      TCGA-44-5643 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-5645      TCGA-44-6144      TCGA-44-6145      TCGA-44-6146 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6147      TCGA-44-6148      TCGA-44-6774      TCGA-44-6775 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6776      TCGA-44-6777      TCGA-44-6778      TCGA-44-6779 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4512 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-4514      TCGA-49-6742      TCGA-49-6743      TCGA-49-6744 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-6745      TCGA-49-6767      TCGA-50-5044      TCGA-50-5045 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5946      TCGA-50-6590      TCGA-50-6591      TCGA-50-6592 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-6593      TCGA-50-6594      TCGA-50-6595      TCGA-50-6597 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6642      TCGA-55-6712 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5775      TCGA-64-5778      TCGA-64-5779 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-4679      TCGA-67-6215 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-75-5122      TCGA-75-5125      TCGA-75-5126      TCGA-75-5146 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-75-5147      TCGA-75-6203      TCGA-75-6205      TCGA-75-6207 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-75-6211      TCGA-75-6212      TCGA-80-5611      TCGA-86-6562 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-91-6836 
"MYL10 WILD-TYPE" 
D32V5, multiclass
        clus
vv       MYL10 MUTATED MYL10 WILD-TYPE
  CLUS_1             3              70
  CLUS_2             1              22
  CLUS_3             1              38
D32V6, multiclass
        clus
vv       MYL10 MUTATED MYL10 WILD-TYPE
  CLUS_1             3              74
  CLUS_2             1              25
  CLUS_3             1              31
D32V7, multiclass
        clus
vv       MYL10 MUTATED MYL10 WILD-TYPE
  CLUS_1             1              48
  CLUS_2             3              66
  CLUS_3             1              52
D32V8, multiclass
        clus
vv       MYL10 MUTATED MYL10 WILD-TYPE
  CLUS_1             3              47
  CLUS_2             1              67
  CLUS_3             1              52
D32V9, multiclass
        clus
vv       MYL10 MUTATED MYL10 WILD-TYPE
  CLUS_1             2              57
  CLUS_2             3              77
  CLUS_3             0              29
D32V10, multiclass
        clus
vv       MYL10 MUTATED MYL10 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             3              88
  CLUS_3             2              55
D32V11, multiclass
[1] "Remove cluster labels:" "MYL10 MUTATED"         
clus
  MYL10 MUTATED MYL10 WILD-TYPE 
              1             104 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4396      TCGA-05-4405 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4410      TCGA-05-4415      TCGA-05-4417      TCGA-05-4424 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4425      TCGA-05-4427      TCGA-05-4433      TCGA-05-5420 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-5423      TCGA-05-5425      TCGA-05-5428      TCGA-05-5429 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-5715      TCGA-35-5375      TCGA-38-4631      TCGA-38-4632 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-38-6178      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4487      TCGA-49-4488 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-4490      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-49-6767 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5044      TCGA-50-5045      TCGA-50-5049      TCGA-50-5051 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5055      TCGA-50-5066      TCGA-50-5068      TCGA-50-5072 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5930      TCGA-50-5931      TCGA-50-5932      TCGA-50-5933 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5935      TCGA-50-5936      TCGA-50-5939      TCGA-50-5941 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5942      TCGA-50-5944      TCGA-50-5946      TCGA-50-6590 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-6591      TCGA-50-6592      TCGA-50-6593      TCGA-50-6594 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-6595      TCGA-50-6597      TCGA-55-5899      TCGA-55-6543 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-55-6642      TCGA-55-6712      TCGA-64-5774      TCGA-64-5775 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-5778      TCGA-64-5779      TCGA-64-5781      TCGA-64-5815 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-67-4679      TCGA-67-6215      TCGA-67-6216      TCGA-67-6217 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4658      TCGA-75-5122      TCGA-75-5125 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-75-5126      TCGA-75-5146      TCGA-75-5147      TCGA-75-6203 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-75-6205      TCGA-75-6206      TCGA-75-6207      TCGA-75-6211 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-75-6212      TCGA-80-5611      TCGA-86-6562      TCGA-91-6828 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-91-6829      TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
D32V12, multiclass
[1] "Remove cluster labels:" "MYL10 MUTATED"         
clus
  MYL10 MUTATED MYL10 WILD-TYPE 
              1             104 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4396      TCGA-05-4405 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4410      TCGA-05-4415      TCGA-05-4417      TCGA-05-4424 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-4425      TCGA-05-4427      TCGA-05-4433      TCGA-05-5420 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-5423      TCGA-05-5425      TCGA-05-5428      TCGA-05-5429 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-05-5715      TCGA-35-5375      TCGA-38-4631      TCGA-38-4632 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-38-6178      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4487      TCGA-49-4488 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-4490      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-49-6767 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5044      TCGA-50-5045      TCGA-50-5049      TCGA-50-5051 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5055      TCGA-50-5066      TCGA-50-5068      TCGA-50-5072 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5930      TCGA-50-5931      TCGA-50-5932      TCGA-50-5933 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5935      TCGA-50-5936      TCGA-50-5939      TCGA-50-5941 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-5942      TCGA-50-5944      TCGA-50-5946      TCGA-50-6590 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-6591      TCGA-50-6592      TCGA-50-6593      TCGA-50-6594 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-50-6595      TCGA-50-6597      TCGA-55-5899      TCGA-55-6543 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-55-6642      TCGA-55-6712      TCGA-64-5774      TCGA-64-5775 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-64-5778      TCGA-64-5779      TCGA-64-5781      TCGA-64-5815 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-67-4679      TCGA-67-6215      TCGA-67-6216      TCGA-67-6217 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4658      TCGA-75-5122      TCGA-75-5125 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-75-5126      TCGA-75-5146      TCGA-75-5147      TCGA-75-6203 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-75-6205      TCGA-75-6206      TCGA-75-6207      TCGA-75-6211 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-75-6212      TCGA-80-5611      TCGA-86-6562      TCGA-91-6828 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 
     TCGA-91-6829      TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" "MYL10 WILD-TYPE" 

Clustering(33) Variable = SMAD4 MUTATION ANALYSIS
D33V1, multiclass
[1] "Remove cluster labels:" "SMAD4 MUTATED"         
clus
  SMAD4 MUTATED SMAD4 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2665 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
D33V2, multiclass
[1] "Remove cluster labels:" "SMAD4 MUTATED"         
clus
  SMAD4 MUTATED SMAD4 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2665 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
D33V3, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             3              67
  CLUS_2             3              65
  CLUS_3             1              33
D33V4, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             2              32
  CLUS_2             2              31
  CLUS_3             1              42
D33V5, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             3              70
  CLUS_2             0              23
  CLUS_3             2              37
D33V6, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             3              74
  CLUS_2             2              24
  CLUS_3             0              32
D33V7, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             0              49
  CLUS_2             4              65
  CLUS_3             3              50
D33V8, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             3              47
  CLUS_2             4              64
  CLUS_3             0              53
D33V9, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             2              57
  CLUS_2             5              75
  CLUS_3             0              29
D33V10, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             1              19
  CLUS_2             5              86
  CLUS_3             1              56
D33V11, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             1              34
  CLUS_3             1              23
D33V12, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             1              10
  CLUS_2             2              44
  CLUS_3             2              46

Clustering(34) Variable = ZNF268 MUTATION ANALYSIS
D34V1, multiclass
        clus
vv       ZNF268 MUTATED ZNF268 WILD-TYPE
  CLUS_1              1                4
  CLUS_2              2                7
  CLUS_3              0               12
  CLUS_4              1                5
D34V2, multiclass
        clus
vv       ZNF268 MUTATED ZNF268 WILD-TYPE
  CLUS_1              1                6
  CLUS_2              1               12
  CLUS_3              2               10
D34V3, multiclass
        clus
vv       ZNF268 MUTATED ZNF268 WILD-TYPE
  CLUS_1              3               67
  CLUS_2              1               67
  CLUS_3              1               33
D34V4, multiclass
[1] "Remove cluster labels:" "ZNF268 MUTATED"        
clus
  ZNF268 MUTATED ZNF268 WILD-TYPE 
               2              108 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4396       TCGA-05-4405 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4410       TCGA-05-4415       TCGA-05-4417       TCGA-05-4424 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-4425       TCGA-05-4427       TCGA-05-4433       TCGA-05-5420 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-5423       TCGA-05-5425       TCGA-05-5428       TCGA-05-5429 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-05-5715       TCGA-35-5375       TCGA-38-4631       TCGA-38-4632 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-38-6178       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-4112       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4487       TCGA-49-4488 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-4490       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-49-6767 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5044       TCGA-50-5045       TCGA-50-5049       TCGA-50-5051 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5055       TCGA-50-5066       TCGA-50-5068       TCGA-50-5072 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5930       TCGA-50-5931       TCGA-50-5932       TCGA-50-5933 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5935       TCGA-50-5936       TCGA-50-5939       TCGA-50-5941 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-5942       TCGA-50-5944       TCGA-50-5946       TCGA-50-6590 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-6591       TCGA-50-6592       TCGA-50-6593       TCGA-50-6594 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-50-6595       TCGA-50-6597       TCGA-55-5899       TCGA-55-6543 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-55-6642       TCGA-55-6712       TCGA-64-5774       TCGA-64-5775 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-64-5778       TCGA-64-5779       TCGA-64-5781       TCGA-64-5815 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-67-4679       TCGA-67-6215       TCGA-67-6216       TCGA-67-6217 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4658       TCGA-73-4676       TCGA-75-5122 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-75-5125       TCGA-75-5126       TCGA-75-5146       TCGA-75-5147 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-75-6203       TCGA-75-6205       TCGA-75-6207       TCGA-75-6211 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-75-6212       TCGA-80-5611       TCGA-86-6562       TCGA-91-6828 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
      TCGA-91-6829       TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" "ZNF268 WILD-TYPE" 
D34V5, multiclass
        clus
vv       ZNF268 MUTATED ZNF268 WILD-TYPE
  CLUS_1              5               68
  CLUS_2              0               23
  CLUS_3              0               39
D34V6, multiclass
        clus
vv       ZNF268 MUTATED ZNF268 WILD-TYPE
  CLUS_1              5               72
  CLUS_2              0               26
  CLUS_3              0               32
D34V7, multiclass
        clus
vv       ZNF268 MUTATED ZNF268 WILD-TYPE
  CLUS_1              1               48
  CLUS_2              2               67
  CLUS_3              2               51
D34V8, multiclass
        clus
vv       ZNF268 MUTATED ZNF268 WILD-TYPE
  CLUS_1              2               48
  CLUS_2              1               67
  CLUS_3              2               51
D34V9, multiclass
        clus
vv       ZNF268 MUTATED ZNF268 WILD-TYPE
  CLUS_1              1               58
  CLUS_2              4               76
  CLUS_3              0               29
D34V10, multiclass
        clus
vv       ZNF268 MUTATED ZNF268 WILD-TYPE
  CLUS_1              0               20
  CLUS_2              4               87
  CLUS_3              1               56
D34V11, multiclass
D34V12, multiclass

Clustering(35) Variable = OR4Q3 MUTATION ANALYSIS
D35V1, multiclass
D35V2, multiclass
D35V3, multiclass
        clus
vv       OR4Q3 MUTATED OR4Q3 WILD-TYPE
  CLUS_1             3              67
  CLUS_2             5              63
  CLUS_3             3              31
D35V4, multiclass
        clus
vv       OR4Q3 MUTATED OR4Q3 WILD-TYPE
  CLUS_1             4              30
  CLUS_2             2              31
  CLUS_3             1              42
D35V5, multiclass
        clus
vv       OR4Q3 MUTATED OR4Q3 WILD-TYPE
  CLUS_1             1              72
  CLUS_2             1              22
  CLUS_3             4              35
D35V6, multiclass
        clus
vv       OR4Q3 MUTATED OR4Q3 WILD-TYPE
  CLUS_1             2              75
  CLUS_2             1              25
  CLUS_3             3              29
D35V7, multiclass
        clus
vv       OR4Q3 MUTATED OR4Q3 WILD-TYPE
  CLUS_1             0              49
  CLUS_2             4              65
  CLUS_3             7              46
D35V8, multiclass
        clus
vv       OR4Q3 MUTATED OR4Q3 WILD-TYPE
  CLUS_1             3              47
  CLUS_2             2              66
  CLUS_3             6              47
D35V9, multiclass
        clus
vv       OR4Q3 MUTATED OR4Q3 WILD-TYPE
  CLUS_1             0              59
  CLUS_2             9              71
  CLUS_3             2              27
D35V10, multiclass
        clus
vv       OR4Q3 MUTATED OR4Q3 WILD-TYPE
  CLUS_1             1              19
  CLUS_2            10              81
  CLUS_3             0              57
D35V11, multiclass
        clus
vv       OR4Q3 MUTATED OR4Q3 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             3              32
  CLUS_3             2              22
D35V12, multiclass
        clus
vv       OR4Q3 MUTATED OR4Q3 WILD-TYPE
  CLUS_1             1              10
  CLUS_2             6              40
  CLUS_3             0              48

Clustering(36) Variable = ARID1A MUTATION ANALYSIS
D36V1, multiclass
[1] "Remove cluster labels:" "ARID1A MUTATED"        
clus
  ARID1A MUTATED ARID1A WILD-TYPE 
               2               30 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-44-3918       TCGA-44-3919       TCGA-44-4112       TCGA-55-1592 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-55-1594       TCGA-55-1595       TCGA-55-1596       TCGA-64-1676 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-64-1677       TCGA-64-1680       TCGA-67-3770       TCGA-67-3772 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
D36V2, multiclass
[1] "Remove cluster labels:" "ARID1A MUTATED"        
clus
  ARID1A MUTATED ARID1A WILD-TYPE 
               2               30 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-44-3918       TCGA-44-3919       TCGA-44-4112       TCGA-55-1592 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-55-1594       TCGA-55-1595       TCGA-55-1596       TCGA-64-1676 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-64-1677       TCGA-64-1680       TCGA-67-3770       TCGA-67-3772 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
D36V3, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              6               64
  CLUS_2              1               67
  CLUS_3              4               30
D36V4, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              4               30
  CLUS_2              3               30
  CLUS_3              1               42
D36V5, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              3               70
  CLUS_2              0               23
  CLUS_3              5               34
D36V6, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              4               73
  CLUS_2              0               26
  CLUS_3              4               28
D36V7, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              1               48
  CLUS_2              4               65
  CLUS_3              6               47
D36V8, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              2               48
  CLUS_2              3               65
  CLUS_3              6               47
D36V9, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              0               59
  CLUS_2             10               70
  CLUS_3              1               28
D36V10, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              0               20
  CLUS_2              9               82
  CLUS_3              2               55
D36V11, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              2               44
  CLUS_2              5               30
  CLUS_3              1               23
D36V12, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              0               11
  CLUS_2              6               40
  CLUS_3              2               46

Clustering(37) Variable = CCDC73 MUTATION ANALYSIS
D37V1, multiclass
[1] "Remove cluster labels:" "CCDC73 MUTATED"        
clus
  CCDC73 MUTATED CCDC73 WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-3918       TCGA-44-3919       TCGA-44-4112       TCGA-55-1592 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-55-1594       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
D37V2, multiclass
[1] "Remove cluster labels:" "CCDC73 MUTATED"        
clus
  CCDC73 MUTATED CCDC73 WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-44-3918       TCGA-44-3919       TCGA-44-4112       TCGA-55-1592 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-55-1594       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" "CCDC73 WILD-TYPE" 
D37V3, multiclass
        clus
vv       CCDC73 MUTATED CCDC73 WILD-TYPE
  CLUS_1              5               65
  CLUS_2              2               66
  CLUS_3              4               30
D37V4, multiclass
        clus
vv       CCDC73 MUTATED CCDC73 WILD-TYPE
  CLUS_1              5               29
  CLUS_2              1               32
  CLUS_3              3               40
D37V5, multiclass
        clus
vv       CCDC73 MUTATED CCDC73 WILD-TYPE
  CLUS_1              6               67
  CLUS_2              1               22
  CLUS_3              2               37
D37V6, multiclass
        clus
vv       CCDC73 MUTATED CCDC73 WILD-TYPE
  CLUS_1              6               71
  CLUS_2              1               25
  CLUS_3              2               30
D37V7, multiclass
        clus
vv       CCDC73 MUTATED CCDC73 WILD-TYPE
  CLUS_1              3               46
  CLUS_2              6               63
  CLUS_3              2               51
D37V8, multiclass
        clus
vv       CCDC73 MUTATED CCDC73 WILD-TYPE
  CLUS_1              4               46
  CLUS_2              4               64
  CLUS_3              3               50
D37V9, multiclass
        clus
vv       CCDC73 MUTATED CCDC73 WILD-TYPE
  CLUS_1              2               57
  CLUS_2              6               74
  CLUS_3              3               26
D37V10, multiclass
        clus
vv       CCDC73 MUTATED CCDC73 WILD-TYPE
  CLUS_1              0               20
  CLUS_2              8               83
  CLUS_3              3               54
D37V11, multiclass
        clus
vv       CCDC73 MUTATED CCDC73 WILD-TYPE
  CLUS_1              4               42
  CLUS_2              4               31
  CLUS_3              1               23
D37V12, multiclass
        clus
vv       CCDC73 MUTATED CCDC73 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              5               41
  CLUS_3              4               44

Clustering(38) Variable = MGA MUTATION ANALYSIS
D38V1, multiclass
[1] "Remove cluster labels:" "MGA MUTATED"           
clus
  MGA MUTATED MGA WILD-TYPE 
            1            31 
   TCGA-05-4244    TCGA-05-4249    TCGA-05-4250    TCGA-35-3615    TCGA-35-4122 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-35-4123    TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-44-2662    TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3398 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-55-1592    TCGA-55-1594 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-64-1680    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-67-3774 
"MGA WILD-TYPE" 
D38V2, multiclass
[1] "Remove cluster labels:" "MGA MUTATED"           
clus
  MGA MUTATED MGA WILD-TYPE 
            1            31 
   TCGA-05-4244    TCGA-05-4249    TCGA-05-4250    TCGA-35-3615    TCGA-35-4122 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-35-4123    TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-44-2662    TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3398 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-55-1592    TCGA-55-1594 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-64-1680    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" "MGA WILD-TYPE" 
   TCGA-67-3774 
"MGA WILD-TYPE" 
D38V3, multiclass
        clus
vv       MGA MUTATED MGA WILD-TYPE
  CLUS_1           6            64
  CLUS_2           6            62
  CLUS_3           4            30
D38V4, multiclass
        clus
vv       MGA MUTATED MGA WILD-TYPE
  CLUS_1           5            29
  CLUS_2           5            28
  CLUS_3           1            42
D38V5, multiclass
        clus
vv       MGA MUTATED MGA WILD-TYPE
  CLUS_1           7            66
  CLUS_2           0            23
  CLUS_3           5            34
D38V6, multiclass
        clus
vv       MGA MUTATED MGA WILD-TYPE
  CLUS_1           7            70
  CLUS_2           2            24
  CLUS_3           3            29
D38V7, multiclass
        clus
vv       MGA MUTATED MGA WILD-TYPE
  CLUS_1           1            48
  CLUS_2           8            61
  CLUS_3           7            46
D38V8, multiclass
        clus
vv       MGA MUTATED MGA WILD-TYPE
  CLUS_1           7            43
  CLUS_2           3            65
  CLUS_3           6            47
D38V9, multiclass
        clus
vv       MGA MUTATED MGA WILD-TYPE
  CLUS_1           3            56
  CLUS_2          10            70
  CLUS_3           2            27
D38V10, multiclass
        clus
vv       MGA MUTATED MGA WILD-TYPE
  CLUS_1           2            18
  CLUS_2          11            80
  CLUS_3           2            55
D38V11, multiclass
        clus
vv       MGA MUTATED MGA WILD-TYPE
  CLUS_1           4            42
  CLUS_2           6            29
  CLUS_3           1            23
D38V12, multiclass
        clus
vv       MGA MUTATED MGA WILD-TYPE
  CLUS_1           0            11
  CLUS_2           7            39
  CLUS_3           4            44

Clustering(39) Variable = FAM48B1 MUTATION ANALYSIS
D39V1, multiclass
        clus
vv       FAM48B1 MUTATED FAM48B1 WILD-TYPE
  CLUS_1               1                 4
  CLUS_2               0                 9
  CLUS_3               2                10
  CLUS_4               1                 5
D39V2, multiclass
        clus
vv       FAM48B1 MUTATED FAM48B1 WILD-TYPE
  CLUS_1               1                 6
  CLUS_2               2                11
  CLUS_3               1                11
D39V3, multiclass
        clus
vv       FAM48B1 MUTATED FAM48B1 WILD-TYPE
  CLUS_1               4                66
  CLUS_2               2                66
  CLUS_3               4                30
D39V4, multiclass
        clus
vv       FAM48B1 MUTATED FAM48B1 WILD-TYPE
  CLUS_1               2                32
  CLUS_2               1                32
  CLUS_3               0                43
D39V5, multiclass
        clus
vv       FAM48B1 MUTATED FAM48B1 WILD-TYPE
  CLUS_1               2                71
  CLUS_2               1                22
  CLUS_3               4                35
D39V6, multiclass
        clus
vv       FAM48B1 MUTATED FAM48B1 WILD-TYPE
  CLUS_1               5                72
  CLUS_2               1                25
  CLUS_3               1                31
D39V7, multiclass
        clus
vv       FAM48B1 MUTATED FAM48B1 WILD-TYPE
  CLUS_1               2                47
  CLUS_2               4                65
  CLUS_3               4                49
D39V8, multiclass
        clus
vv       FAM48B1 MUTATED FAM48B1 WILD-TYPE
  CLUS_1               4                46
  CLUS_2               3                65
  CLUS_3               3                50
D39V9, multiclass
        clus
vv       FAM48B1 MUTATED FAM48B1 WILD-TYPE
  CLUS_1               3                56
  CLUS_2               6                74
  CLUS_3               0                29
D39V10, multiclass
        clus
vv       FAM48B1 MUTATED FAM48B1 WILD-TYPE
  CLUS_1               0                20
  CLUS_2               6                85
  CLUS_3               3                54
D39V11, multiclass
        clus
vv       FAM48B1 MUTATED FAM48B1 WILD-TYPE
  CLUS_1               2                44
  CLUS_2               1                34
  CLUS_3               1                23
D39V12, multiclass
        clus
vv       FAM48B1 MUTATED FAM48B1 WILD-TYPE
  CLUS_1               0                11
  CLUS_2               3                43
  CLUS_3               1                47

Clustering(40) Variable = IFNA7 MUTATION ANALYSIS
D40V1, multiclass
[1] "Remove cluster labels:" "IFNA7 MUTATED"         
clus
  IFNA7 MUTATED IFNA7 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
D40V2, multiclass
[1] "Remove cluster labels:" "IFNA7 MUTATED"         
clus
  IFNA7 MUTATED IFNA7 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" "IFNA7 WILD-TYPE" 
D40V3, multiclass
        clus
vv       IFNA7 MUTATED IFNA7 WILD-TYPE
  CLUS_1             1              69
  CLUS_2             2              66
  CLUS_3             2              32
D40V4, multiclass
        clus
vv       IFNA7 MUTATED IFNA7 WILD-TYPE
  CLUS_1             1              33
  CLUS_2             1              32
  CLUS_3             1              42
D40V5, multiclass
        clus
vv       IFNA7 MUTATED IFNA7 WILD-TYPE
  CLUS_1             2              71
  CLUS_2             0              23
  CLUS_3             1              38
D40V6, multiclass
        clus
vv       IFNA7 MUTATED IFNA7 WILD-TYPE
  CLUS_1             1              76
  CLUS_2             1              25
  CLUS_3             1              31
D40V7, multiclass
        clus
vv       IFNA7 MUTATED IFNA7 WILD-TYPE
  CLUS_1             0              49
  CLUS_2             1              68
  CLUS_3             4              49
D40V8, multiclass
        clus
vv       IFNA7 MUTATED IFNA7 WILD-TYPE
  CLUS_1             0              50
  CLUS_2             2              66
  CLUS_3             3              50
D40V9, multiclass
        clus
vv       IFNA7 MUTATED IFNA7 WILD-TYPE
  CLUS_1             0              59
  CLUS_2             4              76
  CLUS_3             1              28
D40V10, multiclass
        clus
vv       IFNA7 MUTATED IFNA7 WILD-TYPE
  CLUS_1             1              19
  CLUS_2             4              87
  CLUS_3             0              57
D40V11, multiclass
        clus
vv       IFNA7 MUTATED IFNA7 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              35
  CLUS_3             1              23
D40V12, multiclass
        clus
vv       IFNA7 MUTATED IFNA7 WILD-TYPE
  CLUS_1             1              10
  CLUS_2             1              45
  CLUS_3             1              47

Clustering(41) Variable = FANCD2 MUTATION ANALYSIS
D41V1, multiclass
        clus
vv       FANCD2 MUTATED FANCD2 WILD-TYPE
  CLUS_1              0                5
  CLUS_2              2                7
  CLUS_3              3                9
  CLUS_4              0                6
D41V2, multiclass
        clus
vv       FANCD2 MUTATED FANCD2 WILD-TYPE
  CLUS_1              0                7
  CLUS_2              4                9
  CLUS_3              1               11
D41V3, multiclass
        clus
vv       FANCD2 MUTATED FANCD2 WILD-TYPE
  CLUS_1              2               68
  CLUS_2              5               63
  CLUS_3              0               34
D41V4, multiclass
        clus
vv       FANCD2 MUTATED FANCD2 WILD-TYPE
  CLUS_1              0               34
  CLUS_2              2               31
  CLUS_3              2               41
D41V5, multiclass
        clus
vv       FANCD2 MUTATED FANCD2 WILD-TYPE
  CLUS_1              2               71
  CLUS_2              2               21
  CLUS_3              1               38
D41V6, multiclass
        clus
vv       FANCD2 MUTATED FANCD2 WILD-TYPE
  CLUS_1              2               75
  CLUS_2              1               25
  CLUS_3              2               30
D41V7, multiclass
        clus
vv       FANCD2 MUTATED FANCD2 WILD-TYPE
  CLUS_1              2               47
  CLUS_2              4               65
  CLUS_3              1               52
D41V8, multiclass
        clus
vv       FANCD2 MUTATED FANCD2 WILD-TYPE
  CLUS_1              3               47
  CLUS_2              4               64
  CLUS_3              0               53
D41V9, multiclass
        clus
vv       FANCD2 MUTATED FANCD2 WILD-TYPE
  CLUS_1              2               57
  CLUS_2              5               75
  CLUS_3              0               29
D41V10, multiclass
        clus
vv       FANCD2 MUTATED FANCD2 WILD-TYPE
  CLUS_1              0               20
  CLUS_2              5               86
  CLUS_3              2               55
D41V11, multiclass
[1] "Remove cluster labels:" "FANCD2 MUTATED"        
clus
  FANCD2 MUTATED FANCD2 WILD-TYPE 
               1              104 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4405       TCGA-05-4410 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4424       TCGA-05-4425 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4433       TCGA-05-5420       TCGA-05-5423 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-05-5425       TCGA-05-5428       TCGA-05-5429       TCGA-05-5715 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-35-5375       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-44-5643       TCGA-44-5645       TCGA-44-6144       TCGA-44-6145 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-44-6146       TCGA-44-6147       TCGA-44-6148       TCGA-44-6774 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-44-6775       TCGA-44-6776       TCGA-44-6777       TCGA-44-6778 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-44-6779       TCGA-49-4487       TCGA-49-4488       TCGA-49-4490 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-49-6767       TCGA-50-5044 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-4679 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4676       TCGA-75-5122       TCGA-75-5125 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-75-5126       TCGA-75-5146       TCGA-75-5147       TCGA-75-6203 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-75-6205       TCGA-75-6206       TCGA-75-6207       TCGA-75-6211 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-75-6212       TCGA-80-5611       TCGA-86-6562       TCGA-91-6828 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-91-6829       TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
D41V12, multiclass
[1] "Remove cluster labels:" "FANCD2 MUTATED"        
clus
  FANCD2 MUTATED FANCD2 WILD-TYPE 
               1              104 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4405       TCGA-05-4410 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4424       TCGA-05-4425 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4433       TCGA-05-5420       TCGA-05-5423 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-05-5425       TCGA-05-5428       TCGA-05-5429       TCGA-05-5715 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-35-5375       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-44-5643       TCGA-44-5645       TCGA-44-6144       TCGA-44-6145 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-44-6146       TCGA-44-6147       TCGA-44-6148       TCGA-44-6774 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-44-6775       TCGA-44-6776       TCGA-44-6777       TCGA-44-6778 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-44-6779       TCGA-49-4487       TCGA-49-4488       TCGA-49-4490 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-49-6767       TCGA-50-5044 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-50-6597       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-55-6712       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-4679 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-73-4658       TCGA-73-4676       TCGA-75-5122       TCGA-75-5125 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-75-5126       TCGA-75-5146       TCGA-75-5147       TCGA-75-6203 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-75-6205       TCGA-75-6206       TCGA-75-6207       TCGA-75-6211 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-75-6212       TCGA-80-5611       TCGA-86-6562       TCGA-91-6828 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 
      TCGA-91-6829       TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" "FANCD2 WILD-TYPE" 

Clustering(42) Variable = MBD1 MUTATION ANALYSIS
D42V1, multiclass
[1] "Remove cluster labels:" "MBD1 MUTATED"          
clus
  MBD1 MUTATED MBD1 WILD-TYPE 
             2             30 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2656 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2659     TCGA-44-2661     TCGA-44-2662 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-2665     TCGA-44-2666     TCGA-44-2668     TCGA-44-3398 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-3918     TCGA-44-3919     TCGA-44-4112     TCGA-55-1594 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-55-1595     TCGA-55-1596     TCGA-64-1676     TCGA-64-1677 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-64-1678     TCGA-64-1680     TCGA-67-3770     TCGA-67-3772 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-67-3773     TCGA-67-3774 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
D42V2, multiclass
[1] "Remove cluster labels:" "MBD1 MUTATED"          
clus
  MBD1 MUTATED MBD1 WILD-TYPE 
             2             30 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2656 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2659     TCGA-44-2661     TCGA-44-2662 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-2665     TCGA-44-2666     TCGA-44-2668     TCGA-44-3398 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-3918     TCGA-44-3919     TCGA-44-4112     TCGA-55-1594 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-55-1595     TCGA-55-1596     TCGA-64-1676     TCGA-64-1677 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-64-1678     TCGA-64-1680     TCGA-67-3770     TCGA-67-3772 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-67-3773     TCGA-67-3774 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
D42V3, multiclass
        clus
vv       MBD1 MUTATED MBD1 WILD-TYPE
  CLUS_1            2             68
  CLUS_2            1             67
  CLUS_3            3             31
D42V4, multiclass
[1] "Remove cluster labels:" "MBD1 MUTATED"          
clus
  MBD1 MUTATED MBD1 WILD-TYPE 
             2            108 
    TCGA-05-4384     TCGA-05-4390     TCGA-05-4396     TCGA-05-4405 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4410     TCGA-05-4415     TCGA-05-4417     TCGA-05-4424 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-4425     TCGA-05-4427     TCGA-05-4433     TCGA-05-5420 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-5423     TCGA-05-5425     TCGA-05-5428     TCGA-05-5429 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-05-5715     TCGA-35-5375     TCGA-38-4631     TCGA-38-4632 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-38-6178     TCGA-44-2656     TCGA-44-2665     TCGA-44-2666 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3918     TCGA-44-4112     TCGA-44-5643 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-5645     TCGA-44-6144     TCGA-44-6145     TCGA-44-6146 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-6147     TCGA-44-6148     TCGA-44-6774     TCGA-44-6775 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-44-6776     TCGA-44-6777     TCGA-44-6778     TCGA-44-6779 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4512     TCGA-49-4514 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-49-6742     TCGA-49-6743     TCGA-49-6744     TCGA-49-6745 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-49-6767     TCGA-50-5044     TCGA-50-5045     TCGA-50-5049 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5051     TCGA-50-5055     TCGA-50-5066     TCGA-50-5068 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5072     TCGA-50-5930     TCGA-50-5931     TCGA-50-5932 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5933     TCGA-50-5935     TCGA-50-5936     TCGA-50-5939 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-5941     TCGA-50-5942     TCGA-50-5944     TCGA-50-5946 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-6590     TCGA-50-6591     TCGA-50-6592     TCGA-50-6593 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-50-6594     TCGA-50-6595     TCGA-50-6597     TCGA-55-6543 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-55-6642     TCGA-55-6712     TCGA-64-5774     TCGA-64-5775 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-64-5778     TCGA-64-5779     TCGA-64-5781     TCGA-64-5815 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-67-4679     TCGA-67-6215     TCGA-67-6216     TCGA-67-6217 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-71-6725     TCGA-73-4658     TCGA-73-4676     TCGA-75-5122 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-75-5125     TCGA-75-5126     TCGA-75-5146     TCGA-75-5147 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-75-6203     TCGA-75-6205     TCGA-75-6207     TCGA-75-6211 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-75-6212     TCGA-80-5611     TCGA-86-6562     TCGA-91-6828 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
    TCGA-91-6829     TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" "MBD1 WILD-TYPE" 
D42V5, multiclass
        clus
vv       MBD1 MUTATED MBD1 WILD-TYPE
  CLUS_1            3             70
  CLUS_2            0             23
  CLUS_3            2             37
D42V6, multiclass
        clus
vv       MBD1 MUTATED MBD1 WILD-TYPE
  CLUS_1            3             74
  CLUS_2            0             26
  CLUS_3            2             30
D42V7, multiclass
        clus
vv       MBD1 MUTATED MBD1 WILD-TYPE
  CLUS_1            1             48
  CLUS_2            0             69
  CLUS_3            5             48
D42V8, multiclass
        clus
vv       MBD1 MUTATED MBD1 WILD-TYPE
  CLUS_1            0             50
  CLUS_2            3             65
  CLUS_3            3             50
D42V9, multiclass
        clus
vv       MBD1 MUTATED MBD1 WILD-TYPE
  CLUS_1            3             56
  CLUS_2            3             77
  CLUS_3            0             29
D42V10, multiclass
        clus
vv       MBD1 MUTATED MBD1 WILD-TYPE
  CLUS_1            0             20
  CLUS_2            4             87
  CLUS_3            2             55
D42V11, multiclass
        clus
vv       MBD1 MUTATED MBD1 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            1             34
  CLUS_3            0             24
D42V12, multiclass
        clus
vv       MBD1 MUTATED MBD1 WILD-TYPE
  CLUS_1            0             11
  CLUS_2            1             45
  CLUS_3            2             46

Clustering(43) Variable = ASTN2 MUTATION ANALYSIS
D43V1, multiclass
[1] "Remove cluster labels:" "ASTN2 MUTATED"         
clus
  ASTN2 MUTATED ASTN2 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4250      TCGA-35-3615      TCGA-35-4122 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-35-4123      TCGA-44-2655      TCGA-44-2656      TCGA-44-2657 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
D43V2, multiclass
[1] "Remove cluster labels:" "ASTN2 MUTATED"         
clus
  ASTN2 MUTATED ASTN2 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4250      TCGA-35-3615      TCGA-35-4122 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-35-4123      TCGA-44-2655      TCGA-44-2656      TCGA-44-2657 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" "ASTN2 WILD-TYPE" 
D43V3, multiclass
        clus
vv       ASTN2 MUTATED ASTN2 WILD-TYPE
  CLUS_1             8              62
  CLUS_2             5              63
  CLUS_3             2              32
D43V4, multiclass
        clus
vv       ASTN2 MUTATED ASTN2 WILD-TYPE
  CLUS_1             4              30
  CLUS_2             4              29
  CLUS_3             3              40
D43V5, multiclass
        clus
vv       ASTN2 MUTATED ASTN2 WILD-TYPE
  CLUS_1             6              67
  CLUS_2             2              21
  CLUS_3             5              34
D43V6, multiclass
        clus
vv       ASTN2 MUTATED ASTN2 WILD-TYPE
  CLUS_1             8              69
  CLUS_2             2              24
  CLUS_3             3              29
D43V7, multiclass
        clus
vv       ASTN2 MUTATED ASTN2 WILD-TYPE
  CLUS_1             2              47
  CLUS_2             6              63
  CLUS_3             7              46
D43V8, multiclass
        clus
vv       ASTN2 MUTATED ASTN2 WILD-TYPE
  CLUS_1             2              48
  CLUS_2             6              62
  CLUS_3             7              46
D43V9, multiclass
        clus
vv       ASTN2 MUTATED ASTN2 WILD-TYPE
  CLUS_1             2              57
  CLUS_2             8              72
  CLUS_3             4              25
D43V10, multiclass
        clus
vv       ASTN2 MUTATED ASTN2 WILD-TYPE
  CLUS_1             1              19
  CLUS_2             9              82
  CLUS_3             4              53
D43V11, multiclass
        clus
vv       ASTN2 MUTATED ASTN2 WILD-TYPE
  CLUS_1             4              42
  CLUS_2             5              30
  CLUS_3             2              22
D43V12, multiclass
        clus
vv       ASTN2 MUTATED ASTN2 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             7              39
  CLUS_3             4              44

Clustering(44) Variable = MLL3 MUTATION ANALYSIS
D44V1, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1            1              4
  CLUS_2            2              7
  CLUS_3            2             10
  CLUS_4            3              3
D44V2, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1            3              4
  CLUS_2            3             10
  CLUS_3            2             10
D44V3, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1           14             56
  CLUS_2           15             53
  CLUS_3            5             29
D44V4, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1            7             27
  CLUS_2            6             27
  CLUS_3            9             34
D44V5, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1           12             61
  CLUS_2            5             18
  CLUS_3           10             29
D44V6, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1           14             63
  CLUS_2            5             21
  CLUS_3            8             24
D44V7, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1            9             40
  CLUS_2           16             53
  CLUS_3            9             44
D44V8, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1           10             40
  CLUS_2           13             55
  CLUS_3           11             42
D44V9, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1           10             49
  CLUS_2           19             61
  CLUS_3            5             24
D44V10, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1            3             17
  CLUS_2           21             70
  CLUS_3           10             47
D44V11, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1           11             35
  CLUS_2            7             28
  CLUS_3            3             21
D44V12, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1            0             11
  CLUS_2           10             36
  CLUS_3           11             37

Clustering(45) Variable = FLI1 MUTATION ANALYSIS
D45V1, multiclass
        clus
vv       FLI1 MUTATED FLI1 WILD-TYPE
  CLUS_1            0              5
  CLUS_2            2              7
  CLUS_3            1             11
  CLUS_4            0              6
D45V2, multiclass
        clus
vv       FLI1 MUTATED FLI1 WILD-TYPE
  CLUS_1            0              7
  CLUS_2            1             12
  CLUS_3            2             10
D45V3, multiclass
        clus
vv       FLI1 MUTATED FLI1 WILD-TYPE
  CLUS_1            2             68
  CLUS_2            2             66
  CLUS_3            2             32
D45V4, multiclass
        clus
vv       FLI1 MUTATED FLI1 WILD-TYPE
  CLUS_1            1             33
  CLUS_2            1             32
  CLUS_3            1             42
D45V5, multiclass
        clus
vv       FLI1 MUTATED FLI1 WILD-TYPE
  CLUS_1            3             70
  CLUS_2            1             22
  CLUS_3            1             38
D45V6, multiclass
        clus
vv       FLI1 MUTATED FLI1 WILD-TYPE
  CLUS_1            3             74
  CLUS_2            0             26
  CLUS_3            2             30
D45V7, multiclass
        clus
vv       FLI1 MUTATED FLI1 WILD-TYPE
  CLUS_1            1             48
  CLUS_2            3             66
  CLUS_3            2             51
D45V8, multiclass
        clus
vv       FLI1 MUTATED FLI1 WILD-TYPE
  CLUS_1            1             49
  CLUS_2            3             65
  CLUS_3            2             51
D45V9, multiclass
        clus
vv       FLI1 MUTATED FLI1 WILD-TYPE
  CLUS_1            3             56
  CLUS_2            3             77
  CLUS_3            0             29
D45V10, multiclass
        clus
vv       FLI1 MUTATED FLI1 WILD-TYPE
  CLUS_1            1             19
  CLUS_2            3             88
  CLUS_3            2             55
D45V11, multiclass
[1] "Remove cluster labels:" "FLI1 MUTATED"          
clus
  FLI1 MUTATED FLI1 WILD-TYPE 
             2            103 
    TCGA-05-4384     TCGA-05-4390     TCGA-05-4396     TCGA-05-4405 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4410     TCGA-05-4415     TCGA-05-4417     TCGA-05-4425 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4433     TCGA-05-5420     TCGA-05-5423 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-5425     TCGA-05-5428     TCGA-05-5429     TCGA-05-5715 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-35-5375     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-5643     TCGA-44-5645     TCGA-44-6144     TCGA-44-6145 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-6146     TCGA-44-6147     TCGA-44-6148     TCGA-44-6774 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-6775     TCGA-44-6776     TCGA-44-6777     TCGA-44-6778 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-6779     TCGA-49-4487     TCGA-49-4488     TCGA-49-4490 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-49-6767     TCGA-50-5044 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-4679     TCGA-67-6215 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-73-4676     TCGA-75-5122     TCGA-75-5125     TCGA-75-5126 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-75-5146     TCGA-75-5147     TCGA-75-6203     TCGA-75-6205 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-75-6206     TCGA-75-6207     TCGA-75-6211     TCGA-75-6212 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-80-5611     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
D45V12, multiclass
[1] "Remove cluster labels:" "FLI1 MUTATED"          
clus
  FLI1 MUTATED FLI1 WILD-TYPE 
             2            103 
    TCGA-05-4384     TCGA-05-4390     TCGA-05-4396     TCGA-05-4405 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4410     TCGA-05-4415     TCGA-05-4417     TCGA-05-4425 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-4427     TCGA-05-4433     TCGA-05-5420     TCGA-05-5423 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-05-5425     TCGA-05-5428     TCGA-05-5429     TCGA-05-5715 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-35-5375     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-5643     TCGA-44-5645     TCGA-44-6144     TCGA-44-6145 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-6146     TCGA-44-6147     TCGA-44-6148     TCGA-44-6774 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-6775     TCGA-44-6776     TCGA-44-6777     TCGA-44-6778 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-44-6779     TCGA-49-4487     TCGA-49-4488     TCGA-49-4490 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-49-6767     TCGA-50-5044 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-4679     TCGA-67-6215 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-73-4676     TCGA-75-5122     TCGA-75-5125     TCGA-75-5126 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-75-5146     TCGA-75-5147     TCGA-75-6203     TCGA-75-6205 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-75-6206     TCGA-75-6207     TCGA-75-6211     TCGA-75-6212 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-80-5611     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"FLI1 WILD-TYPE" "FLI1 WILD-TYPE" "FLI1 WILD-TYPE" 

Clustering(46) Variable = LAX1 MUTATION ANALYSIS
D46V1, multiclass
[1] "Remove cluster labels:" "LAX1 MUTATED"          
clus
  LAX1 MUTATED LAX1 WILD-TYPE 
             2             30 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2656 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2661     TCGA-44-2662     TCGA-44-2665 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-2666     TCGA-44-2668     TCGA-44-3398     TCGA-44-3918 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-55-1592     TCGA-55-1594 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-55-1595     TCGA-55-1596     TCGA-64-1676     TCGA-64-1677 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-64-1678     TCGA-64-1680     TCGA-67-3771     TCGA-67-3772 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-67-3773     TCGA-67-3774 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
D46V2, multiclass
[1] "Remove cluster labels:" "LAX1 MUTATED"          
clus
  LAX1 MUTATED LAX1 WILD-TYPE 
             2             30 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2656 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2661     TCGA-44-2662     TCGA-44-2665 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-2666     TCGA-44-2668     TCGA-44-3398     TCGA-44-3918 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-55-1592     TCGA-55-1594 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-55-1595     TCGA-55-1596     TCGA-64-1676     TCGA-64-1677 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-64-1678     TCGA-64-1680     TCGA-67-3771     TCGA-67-3772 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-67-3773     TCGA-67-3774 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
D46V3, multiclass
        clus
vv       LAX1 MUTATED LAX1 WILD-TYPE
  CLUS_1            3             67
  CLUS_2            3             65
  CLUS_3            0             34
D46V4, multiclass
[1] "Remove cluster labels:" "LAX1 MUTATED"          
clus
  LAX1 MUTATED LAX1 WILD-TYPE 
             2            108 
    TCGA-05-4384     TCGA-05-4390     TCGA-05-4396     TCGA-05-4405 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-4410     TCGA-05-4415     TCGA-05-4417     TCGA-05-4424 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-4425     TCGA-05-4427     TCGA-05-4433     TCGA-05-5420 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-5423     TCGA-05-5425     TCGA-05-5428     TCGA-05-5429 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-5715     TCGA-35-5375     TCGA-38-4631     TCGA-38-4632 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-38-6178     TCGA-44-2656     TCGA-44-2665     TCGA-44-2666 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-2668     TCGA-44-3918     TCGA-44-4112     TCGA-44-5643 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-5645     TCGA-44-6144     TCGA-44-6145     TCGA-44-6146 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-6147     TCGA-44-6148     TCGA-44-6774     TCGA-44-6775 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-6776     TCGA-44-6777     TCGA-44-6778     TCGA-44-6779 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-49-4487     TCGA-49-4488     TCGA-49-4490     TCGA-49-4512 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-49-4514     TCGA-49-6742     TCGA-49-6743     TCGA-49-6744 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-49-6745     TCGA-50-5044     TCGA-50-5045     TCGA-50-5049 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-5051     TCGA-50-5055     TCGA-50-5066     TCGA-50-5068 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-5072     TCGA-50-5930     TCGA-50-5931     TCGA-50-5932 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-5933     TCGA-50-5935     TCGA-50-5936     TCGA-50-5939 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-5941     TCGA-50-5942     TCGA-50-5944     TCGA-50-5946 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-6590     TCGA-50-6591     TCGA-50-6592     TCGA-50-6593 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-6594     TCGA-50-6595     TCGA-50-6597     TCGA-55-5899 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-55-6543     TCGA-55-6642     TCGA-55-6712     TCGA-64-5774 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-64-5775     TCGA-64-5778     TCGA-64-5779     TCGA-64-5781 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-64-5815     TCGA-67-6215     TCGA-67-6216     TCGA-67-6217 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-71-6725     TCGA-73-4658     TCGA-73-4676     TCGA-75-5122 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-75-5125     TCGA-75-5126     TCGA-75-5146     TCGA-75-5147 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-75-6203     TCGA-75-6205     TCGA-75-6207     TCGA-75-6211 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-75-6212     TCGA-80-5611     TCGA-86-6562     TCGA-91-6828 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-91-6829     TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
D46V5, multiclass
[1] "Remove cluster labels:" "LAX1 MUTATED"          
clus
  LAX1 MUTATED LAX1 WILD-TYPE 
             2            133 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-05-4384 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-4396     TCGA-05-4397     TCGA-05-4398     TCGA-05-4402 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-4405     TCGA-05-4410     TCGA-05-4417     TCGA-05-4418 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-4420     TCGA-05-4422     TCGA-05-4426     TCGA-05-4427 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-4430     TCGA-05-4434     TCGA-05-5420     TCGA-05-5423 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-5425     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4629     TCGA-38-6178     TCGA-44-2656 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2661     TCGA-44-2665     TCGA-44-2668 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4494     TCGA-49-4501     TCGA-49-4505 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-49-4506     TCGA-49-4507     TCGA-49-4510     TCGA-49-4512 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-49-4514     TCGA-49-6742     TCGA-49-6743     TCGA-49-6744 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-49-6745     TCGA-50-5044     TCGA-50-5045     TCGA-50-5049 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-5051     TCGA-50-5066     TCGA-50-5068     TCGA-50-5072 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-5930     TCGA-50-5931     TCGA-50-5932     TCGA-50-5933 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1596 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6712     TCGA-64-1676 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-64-1677     TCGA-64-1678     TCGA-64-1680     TCGA-64-5774 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-64-5778     TCGA-64-5779     TCGA-64-5781     TCGA-64-5815 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-6215     TCGA-67-6216     TCGA-67-6217 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-71-6725     TCGA-73-4658     TCGA-73-4659     TCGA-73-4670 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-73-4675     TCGA-73-4676     TCGA-75-5122     TCGA-75-5125 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-75-6203     TCGA-75-6205     TCGA-75-6206     TCGA-75-6207 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-75-6211     TCGA-75-6212     TCGA-80-5611     TCGA-86-6562 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-91-6836 
"LAX1 WILD-TYPE" 
D46V6, multiclass
[1] "Remove cluster labels:" "LAX1 MUTATED"          
clus
  LAX1 MUTATED LAX1 WILD-TYPE 
             2            133 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-05-4384 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-4396     TCGA-05-4397     TCGA-05-4398     TCGA-05-4402 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-4405     TCGA-05-4410     TCGA-05-4417     TCGA-05-4418 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-4420     TCGA-05-4422     TCGA-05-4426     TCGA-05-4427 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-4430     TCGA-05-4434     TCGA-05-5420     TCGA-05-5423 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-5425     TCGA-05-5429     TCGA-05-5715     TCGA-35-3615 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-35-5375     TCGA-38-4625 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4629     TCGA-38-6178     TCGA-44-2656 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2661     TCGA-44-2665     TCGA-44-2668 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4494     TCGA-49-4501     TCGA-49-4505 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-49-4506     TCGA-49-4507     TCGA-49-4510     TCGA-49-4512 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-49-4514     TCGA-49-6742     TCGA-49-6743     TCGA-49-6744 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-49-6745     TCGA-50-5044     TCGA-50-5045     TCGA-50-5049 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-5051     TCGA-50-5066     TCGA-50-5068     TCGA-50-5072 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-5930     TCGA-50-5931     TCGA-50-5932     TCGA-50-5933 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-1592     TCGA-55-1594     TCGA-55-1596 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6712     TCGA-64-1676 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-64-1677     TCGA-64-1678     TCGA-64-1680     TCGA-64-5774 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-64-5778     TCGA-64-5779     TCGA-64-5781     TCGA-64-5815 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-6215     TCGA-67-6216     TCGA-67-6217 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-71-6725     TCGA-73-4658     TCGA-73-4659     TCGA-73-4670 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-73-4675     TCGA-73-4676     TCGA-75-5122     TCGA-75-5125 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-75-6203     TCGA-75-6205     TCGA-75-6206     TCGA-75-6207 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-75-6211     TCGA-75-6212     TCGA-80-5611     TCGA-86-6562 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-91-6836 
"LAX1 WILD-TYPE" 
D46V7, multiclass
        clus
vv       LAX1 MUTATED LAX1 WILD-TYPE
  CLUS_1            3             46
  CLUS_2            3             66
  CLUS_3            0             53
D46V8, multiclass
        clus
vv       LAX1 MUTATED LAX1 WILD-TYPE
  CLUS_1            1             49
  CLUS_2            4             64
  CLUS_3            1             52
D46V9, multiclass
        clus
vv       LAX1 MUTATED LAX1 WILD-TYPE
  CLUS_1            3             56
  CLUS_2            3             77
  CLUS_3            0             29
D46V10, multiclass
        clus
vv       LAX1 MUTATED LAX1 WILD-TYPE
  CLUS_1            1             19
  CLUS_2            3             88
  CLUS_3            2             55
D46V11, multiclass
[1] "Remove cluster labels:" "LAX1 MUTATED"          
clus
  LAX1 MUTATED LAX1 WILD-TYPE 
             2            103 
    TCGA-05-4384     TCGA-05-4390     TCGA-05-4396     TCGA-05-4405 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-4410     TCGA-05-4415     TCGA-05-4417     TCGA-05-4424 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-4425     TCGA-05-4427     TCGA-05-4433     TCGA-05-5420 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-5423     TCGA-05-5425     TCGA-05-5428     TCGA-05-5429 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-5715     TCGA-35-5375     TCGA-38-4631     TCGA-38-4632 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-38-6178     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4487     TCGA-49-4488 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-49-4490     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-6215 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-73-4676     TCGA-75-5122     TCGA-75-5125     TCGA-75-5126 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-75-5146     TCGA-75-5147     TCGA-75-6203     TCGA-75-6205 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-75-6206     TCGA-75-6207     TCGA-75-6211     TCGA-75-6212 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-80-5611     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
D46V12, multiclass
[1] "Remove cluster labels:" "LAX1 MUTATED"          
clus
  LAX1 MUTATED LAX1 WILD-TYPE 
             2            103 
    TCGA-05-4384     TCGA-05-4390     TCGA-05-4396     TCGA-05-4405 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-4410     TCGA-05-4415     TCGA-05-4417     TCGA-05-4424 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-4425     TCGA-05-4427     TCGA-05-4433     TCGA-05-5420 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-5423     TCGA-05-5425     TCGA-05-5428     TCGA-05-5429 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-05-5715     TCGA-35-5375     TCGA-38-4631     TCGA-38-4632 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-38-6178     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4487     TCGA-49-4488 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-49-4490     TCGA-49-4512     TCGA-49-4514     TCGA-49-6742 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-49-6743     TCGA-49-6744     TCGA-49-6745     TCGA-50-5044 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-5045     TCGA-50-5049     TCGA-50-5051     TCGA-50-5055 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-5066     TCGA-50-5068     TCGA-50-5072     TCGA-50-5930 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-5931     TCGA-50-5932     TCGA-50-5933     TCGA-50-5935 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-5936     TCGA-50-5939     TCGA-50-5941     TCGA-50-5942 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-5944     TCGA-50-5946     TCGA-50-6590     TCGA-50-6591 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-6592     TCGA-50-6593     TCGA-50-6594     TCGA-50-6595 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-50-6597     TCGA-55-5899     TCGA-55-6543     TCGA-55-6642 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-55-6712     TCGA-64-5774     TCGA-64-5775     TCGA-64-5778 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-64-5779     TCGA-64-5781     TCGA-64-5815     TCGA-67-6215 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-73-4676     TCGA-75-5122     TCGA-75-5125     TCGA-75-5126 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-75-5146     TCGA-75-5147     TCGA-75-6203     TCGA-75-6205 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-75-6206     TCGA-75-6207     TCGA-75-6211     TCGA-75-6212 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-80-5611     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"LAX1 WILD-TYPE" "LAX1 WILD-TYPE" "LAX1 WILD-TYPE" 

Clustering(47) Variable = SVOP MUTATION ANALYSIS
D47V1, multiclass
D47V2, multiclass
D47V3, multiclass
        clus
vv       SVOP MUTATED SVOP WILD-TYPE
  CLUS_1            4             66
  CLUS_2            2             66
  CLUS_3            1             33
D47V4, multiclass
        clus
vv       SVOP MUTATED SVOP WILD-TYPE
  CLUS_1            1             33
  CLUS_2            3             30
  CLUS_3            1             42
D47V5, multiclass
        clus
vv       SVOP MUTATED SVOP WILD-TYPE
  CLUS_1            3             70
  CLUS_2            0             23
  CLUS_3            4             35
D47V6, multiclass
        clus
vv       SVOP MUTATED SVOP WILD-TYPE
  CLUS_1            5             72
  CLUS_2            0             26
  CLUS_3            2             30
D47V7, multiclass
        clus
vv       SVOP MUTATED SVOP WILD-TYPE
  CLUS_1            1             48
  CLUS_2            3             66
  CLUS_3            3             50
D47V8, multiclass
        clus
vv       SVOP MUTATED SVOP WILD-TYPE
  CLUS_1            3             47
  CLUS_2            2             66
  CLUS_3            2             51
D47V9, multiclass
        clus
vv       SVOP MUTATED SVOP WILD-TYPE
  CLUS_1            3             56
  CLUS_2            4             76
  CLUS_3            0             29
D47V10, multiclass
        clus
vv       SVOP MUTATED SVOP WILD-TYPE
  CLUS_1            0             20
  CLUS_2            4             87
  CLUS_3            3             54
D47V11, multiclass
        clus
vv       SVOP MUTATED SVOP WILD-TYPE
  CLUS_1            4             42
  CLUS_2            1             34
  CLUS_3            0             24
D47V12, multiclass
        clus
vv       SVOP MUTATED SVOP WILD-TYPE
  CLUS_1            0             11
  CLUS_2            2             44
  CLUS_3            3             45

Clustering(48) Variable = MTTP MUTATION ANALYSIS
D48V1, multiclass
[1] "Remove cluster labels:" "MTTP MUTATED"          
clus
  MTTP MUTATED MTTP WILD-TYPE 
             2             30 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2656 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2659     TCGA-44-2661     TCGA-44-2662 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-2665     TCGA-44-2666     TCGA-44-2668     TCGA-44-3398 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-3918     TCGA-44-3919     TCGA-44-4112     TCGA-55-1592 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-55-1594     TCGA-55-1595     TCGA-55-1596     TCGA-64-1676 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-64-1677     TCGA-64-1678     TCGA-67-3770     TCGA-67-3771 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" 
D48V2, multiclass
[1] "Remove cluster labels:" "MTTP MUTATED"          
clus
  MTTP MUTATED MTTP WILD-TYPE 
             2             30 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2656 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2659     TCGA-44-2661     TCGA-44-2662 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-2665     TCGA-44-2666     TCGA-44-2668     TCGA-44-3398 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-44-3918     TCGA-44-3919     TCGA-44-4112     TCGA-55-1592 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-55-1594     TCGA-55-1595     TCGA-55-1596     TCGA-64-1676 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-64-1677     TCGA-64-1678     TCGA-67-3770     TCGA-67-3771 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" "MTTP WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773 
"MTTP WILD-TYPE" "MTTP WILD-TYPE" 
D48V3, multiclass
        clus
vv       MTTP MUTATED MTTP WILD-TYPE
  CLUS_1            1             69
  CLUS_2            5             63
  CLUS_3            0             34
D48V4, multiclass
        clus
vv       MTTP MUTATED MTTP WILD-TYPE
  CLUS_1            0             34
  CLUS_2            2             31
  CLUS_3            2             41
D48V5, multiclass
        clus
vv       MTTP MUTATED MTTP WILD-TYPE
  CLUS_1            3             70
  CLUS_2            1             22
  CLUS_3            1             38
D48V6, multiclass
        clus
vv       MTTP MUTATED MTTP WILD-TYPE
  CLUS_1            4             73
  CLUS_2            1             25
  CLUS_3            0             32
D48V7, multiclass
        clus
vv       MTTP MUTATED MTTP WILD-TYPE
  CLUS_1            3             46
  CLUS_2            1             68
  CLUS_3            2             51
D48V8, multiclass
        clus
vv       MTTP MUTATED MTTP WILD-TYPE
  CLUS_1            0             50
  CLUS_2            6             62
  CLUS_3            0             53
D48V9, multiclass
        clus
vv       MTTP MUTATED MTTP WILD-TYPE
  CLUS_1            4             55
  CLUS_2            2             78
  CLUS_3            0             29
D48V10, multiclass
        clus
vv       MTTP MUTATED MTTP WILD-TYPE
  CLUS_1            0             20
  CLUS_2            3             88
  CLUS_3            3             54
D48V11, multiclass
        clus
vv       MTTP MUTATED MTTP WILD-TYPE
  CLUS_1            3             43
  CLUS_2            1             34
  CLUS_3            0             24
D48V12, multiclass
        clus
vv       MTTP MUTATED MTTP WILD-TYPE
  CLUS_1            0             11
  CLUS_2            1             45
  CLUS_3            3             45

Clustering(49) Variable = COL19A1 MUTATION ANALYSIS
D49V1, multiclass
[1] "Remove cluster labels:" "COL19A1 MUTATED"       
clus
  COL19A1 MUTATED COL19A1 WILD-TYPE 
                1                31 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2656 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3398 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-55-1592 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-55-1594        TCGA-55-1595        TCGA-55-1596        TCGA-64-1676 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1680        TCGA-67-3770        TCGA-67-3771 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
D49V2, multiclass
[1] "Remove cluster labels:" "COL19A1 MUTATED"       
clus
  COL19A1 MUTATED COL19A1 WILD-TYPE 
                1                31 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2656 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3398 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-55-1592 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-55-1594        TCGA-55-1595        TCGA-55-1596        TCGA-64-1676 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1680        TCGA-67-3770        TCGA-67-3771 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" "COL19A1 WILD-TYPE" 
D49V3, multiclass
        clus
vv       COL19A1 MUTATED COL19A1 WILD-TYPE
  CLUS_1               6                64
  CLUS_2               4                64
  CLUS_3               4                30
D49V4, multiclass
        clus
vv       COL19A1 MUTATED COL19A1 WILD-TYPE
  CLUS_1               5                29
  CLUS_2               4                29
  CLUS_3               3                40
D49V5, multiclass
        clus
vv       COL19A1 MUTATED COL19A1 WILD-TYPE
  CLUS_1               6                67
  CLUS_2               0                23
  CLUS_3               7                32
D49V6, multiclass
        clus
vv       COL19A1 MUTATED COL19A1 WILD-TYPE
  CLUS_1               9                68
  CLUS_2               1                25
  CLUS_3               3                29
D49V7, multiclass
        clus
vv       COL19A1 MUTATED COL19A1 WILD-TYPE
  CLUS_1               0                49
  CLUS_2               9                60
  CLUS_3               5                48
D49V8, multiclass
        clus
vv       COL19A1 MUTATED COL19A1 WILD-TYPE
  CLUS_1               5                45
  CLUS_2               2                66
  CLUS_3               7                46
D49V9, multiclass
        clus
vv       COL19A1 MUTATED COL19A1 WILD-TYPE
  CLUS_1               2                57
  CLUS_2               9                71
  CLUS_3               3                26
D49V10, multiclass
        clus
vv       COL19A1 MUTATED COL19A1 WILD-TYPE
  CLUS_1               1                19
  CLUS_2              11                80
  CLUS_3               2                55
D49V11, multiclass
        clus
vv       COL19A1 MUTATED COL19A1 WILD-TYPE
  CLUS_1               2                44
  CLUS_2               7                28
  CLUS_3               3                21
D49V12, multiclass
        clus
vv       COL19A1 MUTATED COL19A1 WILD-TYPE
  CLUS_1               0                11
  CLUS_2               9                37
  CLUS_3               3                45

Clustering(50) Variable = LRRC32 MUTATION ANALYSIS
D50V1, multiclass
        clus
vv       LRRC32 MUTATED LRRC32 WILD-TYPE
  CLUS_1              0                5
  CLUS_2              0                9
  CLUS_3              3                9
  CLUS_4              1                5
D50V2, multiclass
        clus
vv       LRRC32 MUTATED LRRC32 WILD-TYPE
  CLUS_1              1                6
  CLUS_2              3               10
  CLUS_3              0               12
D50V3, multiclass
        clus
vv       LRRC32 MUTATED LRRC32 WILD-TYPE
  CLUS_1              4               66
  CLUS_2              1               67
  CLUS_3              6               28
D50V4, multiclass
        clus
vv       LRRC32 MUTATED LRRC32 WILD-TYPE
  CLUS_1              4               30
  CLUS_2              2               31
  CLUS_3              1               42
D50V5, multiclass
        clus
vv       LRRC32 MUTATED LRRC32 WILD-TYPE
  CLUS_1              3               70
  CLUS_2              0               23
  CLUS_3              4               35
D50V6, multiclass
        clus
vv       LRRC32 MUTATED LRRC32 WILD-TYPE
  CLUS_1              3               74
  CLUS_2              0               26
  CLUS_3              4               28
D50V7, multiclass
        clus
vv       LRRC32 MUTATED LRRC32 WILD-TYPE
  CLUS_1              1               48
  CLUS_2              5               64
  CLUS_3              5               48
D50V8, multiclass
        clus
vv       LRRC32 MUTATED LRRC32 WILD-TYPE
  CLUS_1              3               47
  CLUS_2              2               66
  CLUS_3              6               47
D50V9, multiclass
        clus
vv       LRRC32 MUTATED LRRC32 WILD-TYPE
  CLUS_1              2               57
  CLUS_2              5               75
  CLUS_3              3               26
D50V10, multiclass
        clus
vv       LRRC32 MUTATED LRRC32 WILD-TYPE
  CLUS_1              1               19
  CLUS_2              8               83
  CLUS_3              1               56
D50V11, multiclass
        clus
vv       LRRC32 MUTATED LRRC32 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              2               33
  CLUS_3              2               22
D50V12, multiclass
        clus
vv       LRRC32 MUTATED LRRC32 WILD-TYPE
  CLUS_1              1               10
  CLUS_2              5               41
  CLUS_3              0               48

Clustering(51) Variable = TEX15 MUTATION ANALYSIS
D51V1, multiclass
[1] "Remove cluster labels:" "TEX15 MUTATED"         
clus
  TEX15 MUTATED TEX15 WILD-TYPE 
              2              30 
     TCGA-05-4244      TCGA-05-4250      TCGA-35-3615      TCGA-35-4122 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-35-4123      TCGA-44-2655      TCGA-44-2656      TCGA-44-2657 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1594      TCGA-55-1595 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-55-1596      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-64-1680      TCGA-67-3770      TCGA-67-3771      TCGA-67-3772 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-67-3773      TCGA-67-3774 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
D51V2, multiclass
[1] "Remove cluster labels:" "TEX15 MUTATED"         
clus
  TEX15 MUTATED TEX15 WILD-TYPE 
              2              30 
     TCGA-05-4244      TCGA-05-4250      TCGA-35-3615      TCGA-35-4122 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-35-4123      TCGA-44-2655      TCGA-44-2656      TCGA-44-2657 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1594      TCGA-55-1595 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-55-1596      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-64-1680      TCGA-67-3770      TCGA-67-3771      TCGA-67-3772 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
     TCGA-67-3773      TCGA-67-3774 
"TEX15 WILD-TYPE" "TEX15 WILD-TYPE" 
D51V3, multiclass
        clus
vv       TEX15 MUTATED TEX15 WILD-TYPE
  CLUS_1            10              60
  CLUS_2            12              56
  CLUS_3             2              32
D51V4, multiclass
        clus
vv       TEX15 MUTATED TEX15 WILD-TYPE
  CLUS_1             1              33
  CLUS_2            10              23
  CLUS_3             7              36
D51V5, multiclass
        clus
vv       TEX15 MUTATED TEX15 WILD-TYPE
  CLUS_1            11              62
  CLUS_2             3              20
  CLUS_3             7              32
D51V6, multiclass
        clus
vv       TEX15 MUTATED TEX15 WILD-TYPE
  CLUS_1            14              63
  CLUS_2             5              21
  CLUS_3             2              30
D51V7, multiclass
        clus
vv       TEX15 MUTATED TEX15 WILD-TYPE
  CLUS_1             3              46
  CLUS_2            14              55
  CLUS_3             7              46
D51V8, multiclass
        clus
vv       TEX15 MUTATED TEX15 WILD-TYPE
  CLUS_1            12              38
  CLUS_2             6              62
  CLUS_3             6              47
D51V9, multiclass
        clus
vv       TEX15 MUTATED TEX15 WILD-TYPE
  CLUS_1             5              54
  CLUS_2            14              66
  CLUS_3             5              24
D51V10, multiclass
        clus
vv       TEX15 MUTATED TEX15 WILD-TYPE
  CLUS_1             2              18
  CLUS_2            16              75
  CLUS_3             6              51
D51V11, multiclass
        clus
vv       TEX15 MUTATED TEX15 WILD-TYPE
  CLUS_1             8              38
  CLUS_2             7              28
  CLUS_3             3              21
D51V12, multiclass
        clus
vv       TEX15 MUTATED TEX15 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             9              37
  CLUS_3             9              39

Clustering(52) Variable = OR10G9 MUTATION ANALYSIS
D52V1, multiclass
[1] "Remove cluster labels:" "OR10G9 MUTATED"        
clus
  OR10G9 MUTATED OR10G9 WILD-TYPE 
               2               30 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-4122 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-35-4123       TCGA-44-2655       TCGA-44-2656       TCGA-44-2657 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-44-2659       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3398       TCGA-44-3918 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-55-1595       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-64-1680       TCGA-67-3770       TCGA-67-3771       TCGA-67-3772 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
D52V2, multiclass
[1] "Remove cluster labels:" "OR10G9 MUTATED"        
clus
  OR10G9 MUTATED OR10G9 WILD-TYPE 
               2               30 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-4122 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-35-4123       TCGA-44-2655       TCGA-44-2656       TCGA-44-2657 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-44-2659       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3398       TCGA-44-3918 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-55-1595       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-64-1680       TCGA-67-3770       TCGA-67-3771       TCGA-67-3772 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
D52V3, multiclass
        clus
vv       OR10G9 MUTATED OR10G9 WILD-TYPE
  CLUS_1              6               64
  CLUS_2              2               66
  CLUS_3              2               32
D52V4, multiclass
        clus
vv       OR10G9 MUTATED OR10G9 WILD-TYPE
  CLUS_1              1               33
  CLUS_2              5               28
  CLUS_3              1               42
D52V5, multiclass
        clus
vv       OR10G9 MUTATED OR10G9 WILD-TYPE
  CLUS_1              5               68
  CLUS_2              1               22
  CLUS_3              1               38
D52V6, multiclass
        clus
vv       OR10G9 MUTATED OR10G9 WILD-TYPE
  CLUS_1              6               71
  CLUS_2              1               25
  CLUS_3              0               32
D52V7, multiclass
        clus
vv       OR10G9 MUTATED OR10G9 WILD-TYPE
  CLUS_1              2               47
  CLUS_2              6               63
  CLUS_3              2               51
D52V8, multiclass
        clus
vv       OR10G9 MUTATED OR10G9 WILD-TYPE
  CLUS_1              6               44
  CLUS_2              2               66
  CLUS_3              2               51
D52V9, multiclass
        clus
vv       OR10G9 MUTATED OR10G9 WILD-TYPE
  CLUS_1              2               57
  CLUS_2              7               73
  CLUS_3              1               28
D52V10, multiclass
        clus
vv       OR10G9 MUTATED OR10G9 WILD-TYPE
  CLUS_1              0               20
  CLUS_2              7               84
  CLUS_3              3               54
D52V11, multiclass
        clus
vv       OR10G9 MUTATED OR10G9 WILD-TYPE
  CLUS_1              4               42
  CLUS_2              3               32
  CLUS_3              0               24
D52V12, multiclass
        clus
vv       OR10G9 MUTATED OR10G9 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              5               41
  CLUS_3              2               46

Clustering(53) Variable = CNGA2 MUTATION ANALYSIS
D53V1, multiclass
        clus
vv       CNGA2 MUTATED CNGA2 WILD-TYPE
  CLUS_1             0               5
  CLUS_2             1               8
  CLUS_3             0              12
  CLUS_4             2               4
D53V2, multiclass
        clus
vv       CNGA2 MUTATED CNGA2 WILD-TYPE
  CLUS_1             2               5
  CLUS_2             0              13
  CLUS_3             1              11
D53V3, multiclass
        clus
vv       CNGA2 MUTATED CNGA2 WILD-TYPE
  CLUS_1             7              63
  CLUS_2             3              65
  CLUS_3             1              33
D53V4, multiclass
        clus
vv       CNGA2 MUTATED CNGA2 WILD-TYPE
  CLUS_1             1              33
  CLUS_2             4              29
  CLUS_3             1              42
D53V5, multiclass
        clus
vv       CNGA2 MUTATED CNGA2 WILD-TYPE
  CLUS_1             6              67
  CLUS_2             1              22
  CLUS_3             3              36
D53V6, multiclass
        clus
vv       CNGA2 MUTATED CNGA2 WILD-TYPE
  CLUS_1             6              71
  CLUS_2             2              24
  CLUS_3             2              30
D53V7, multiclass
        clus
vv       CNGA2 MUTATED CNGA2 WILD-TYPE
  CLUS_1             2              47
  CLUS_2             4              65
  CLUS_3             5              48
D53V8, multiclass
        clus
vv       CNGA2 MUTATED CNGA2 WILD-TYPE
  CLUS_1             3              47
  CLUS_2             4              64
  CLUS_3             4              49
D53V9, multiclass
        clus
vv       CNGA2 MUTATED CNGA2 WILD-TYPE
  CLUS_1             2              57
  CLUS_2             7              73
  CLUS_3             2              27
D53V10, multiclass
        clus
vv       CNGA2 MUTATED CNGA2 WILD-TYPE
  CLUS_1             1              19
  CLUS_2             9              82
  CLUS_3             1              56
D53V11, multiclass
        clus
vv       CNGA2 MUTATED CNGA2 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             1              34
  CLUS_3             2              22
D53V12, multiclass
        clus
vv       CNGA2 MUTATED CNGA2 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             3              43
  CLUS_3             3              45

Clustering(54) Variable = FGB MUTATION ANALYSIS
D54V1, multiclass
[1] "Remove cluster labels:" "FGB MUTATED"           
clus
  FGB MUTATED FGB WILD-TYPE 
            2            30 
   TCGA-05-4244    TCGA-05-4249    TCGA-05-4250    TCGA-35-3615    TCGA-35-4122 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-35-4123    TCGA-44-2655    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-2662    TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3398 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-55-1592    TCGA-55-1594 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773    TCGA-67-3774 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
D54V2, multiclass
[1] "Remove cluster labels:" "FGB MUTATED"           
clus
  FGB MUTATED FGB WILD-TYPE 
            2            30 
   TCGA-05-4244    TCGA-05-4249    TCGA-05-4250    TCGA-35-3615    TCGA-35-4122 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-35-4123    TCGA-44-2655    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-2662    TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3398 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-55-1592    TCGA-55-1594 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
   TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773    TCGA-67-3774 
"FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" "FGB WILD-TYPE" 
D54V3, multiclass
        clus
vv       FGB MUTATED FGB WILD-TYPE
  CLUS_1           2            68
  CLUS_2           6            62
  CLUS_3           3            31
D54V4, multiclass
        clus
vv       FGB MUTATED FGB WILD-TYPE
  CLUS_1           1            33
  CLUS_2           2            31
  CLUS_3           5            38
D54V5, multiclass
        clus
vv       FGB MUTATED FGB WILD-TYPE
  CLUS_1           6            67
  CLUS_2           1            22
  CLUS_3           2            37
D54V6, multiclass
        clus
vv       FGB MUTATED FGB WILD-TYPE
  CLUS_1           5            72
  CLUS_2           2            24
  CLUS_3           2            30
D54V7, multiclass
        clus
vv       FGB MUTATED FGB WILD-TYPE
  CLUS_1           3            46
  CLUS_2           4            65
  CLUS_3           4            49
D54V8, multiclass
        clus
vv       FGB MUTATED FGB WILD-TYPE
  CLUS_1           4            46
  CLUS_2           4            64
  CLUS_3           3            50
D54V9, multiclass
        clus
vv       FGB MUTATED FGB WILD-TYPE
  CLUS_1           5            54
  CLUS_2           4            76
  CLUS_3           2            27
D54V10, multiclass
        clus
vv       FGB MUTATED FGB WILD-TYPE
  CLUS_1           1            19
  CLUS_2           6            85
  CLUS_3           4            53
D54V11, multiclass
        clus
vv       FGB MUTATED FGB WILD-TYPE
  CLUS_1           6            40
  CLUS_2           0            35
  CLUS_3           1            23
D54V12, multiclass
        clus
vv       FGB MUTATED FGB WILD-TYPE
  CLUS_1           0            11
  CLUS_2           2            44
  CLUS_3           5            43

Clustering(55) Variable = ANP32C MUTATION ANALYSIS
D55V1, multiclass
[1] "Remove cluster labels:" "ANP32C MUTATED"        
clus
  ANP32C MUTATED ANP32C WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2657 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-44-2659       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3398       TCGA-44-3918 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
D55V2, multiclass
[1] "Remove cluster labels:" "ANP32C MUTATED"        
clus
  ANP32C MUTATED ANP32C WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2657 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-44-2659       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3398       TCGA-44-3918 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"ANP32C WILD-TYPE" "ANP32C WILD-TYPE" "ANP32C WILD-TYPE" 
D55V3, multiclass
        clus
vv       ANP32C MUTATED ANP32C WILD-TYPE
  CLUS_1              4               66
  CLUS_2              2               66
  CLUS_3              2               32
D55V4, multiclass
        clus
vv       ANP32C MUTATED ANP32C WILD-TYPE
  CLUS_1              2               32
  CLUS_2              4               29
  CLUS_3              0               43
D55V5, multiclass
        clus
vv       ANP32C MUTATED ANP32C WILD-TYPE
  CLUS_1              4               69
  CLUS_2              1               22
  CLUS_3              2               37
D55V6, multiclass
        clus
vv       ANP32C MUTATED ANP32C WILD-TYPE
  CLUS_1              5               72
  CLUS_2              2               24
  CLUS_3              0               32
D55V7, multiclass
        clus
vv       ANP32C MUTATED ANP32C WILD-TYPE
  CLUS_1              0               49
  CLUS_2              4               65
  CLUS_3              4               49
D55V8, multiclass
        clus
vv       ANP32C MUTATED ANP32C WILD-TYPE
  CLUS_1              2               48
  CLUS_2              2               66
  CLUS_3              4               49
D55V9, multiclass
        clus
vv       ANP32C MUTATED ANP32C WILD-TYPE
  CLUS_1              1               58
  CLUS_2              5               75
  CLUS_3              2               27
D55V10, multiclass
        clus
vv       ANP32C MUTATED ANP32C WILD-TYPE
  CLUS_1              0               20
  CLUS_2              6               85
  CLUS_3              2               55
D55V11, multiclass
        clus
vv       ANP32C MUTATED ANP32C WILD-TYPE
  CLUS_1              2               44
  CLUS_2              2               33
  CLUS_3              1               23
D55V12, multiclass
        clus
vv       ANP32C MUTATED ANP32C WILD-TYPE
  CLUS_1              0               11
  CLUS_2              2               44
  CLUS_3              3               45

Clustering(56) Variable = KIAA1755 MUTATION ANALYSIS
D56V1, multiclass
        clus
vv       KIAA1755 MUTATED KIAA1755 WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                3                  6
  CLUS_3                1                 11
  CLUS_4                1                  5
D56V2, multiclass
        clus
vv       KIAA1755 MUTATED KIAA1755 WILD-TYPE
  CLUS_1                1                  6
  CLUS_2                1                 12
  CLUS_3                3                  9
D56V3, multiclass
        clus
vv       KIAA1755 MUTATED KIAA1755 WILD-TYPE
  CLUS_1                3                 67
  CLUS_2                7                 61
  CLUS_3                2                 32
D56V4, multiclass
        clus
vv       KIAA1755 MUTATED KIAA1755 WILD-TYPE
  CLUS_1                1                 33
  CLUS_2                4                 29
  CLUS_3                3                 40
D56V5, multiclass
        clus
vv       KIAA1755 MUTATED KIAA1755 WILD-TYPE
  CLUS_1                3                 70
  CLUS_2                3                 20
  CLUS_3                5                 34
D56V6, multiclass
        clus
vv       KIAA1755 MUTATED KIAA1755 WILD-TYPE
  CLUS_1                3                 74
  CLUS_2                3                 23
  CLUS_3                5                 27
D56V7, multiclass
        clus
vv       KIAA1755 MUTATED KIAA1755 WILD-TYPE
  CLUS_1                4                 45
  CLUS_2                4                 65
  CLUS_3                4                 49
D56V8, multiclass
        clus
vv       KIAA1755 MUTATED KIAA1755 WILD-TYPE
  CLUS_1                3                 47
  CLUS_2                6                 62
  CLUS_3                3                 50
D56V9, multiclass
        clus
vv       KIAA1755 MUTATED KIAA1755 WILD-TYPE
  CLUS_1                3                 56
  CLUS_2                6                 74
  CLUS_3                3                 26
D56V10, multiclass
        clus
vv       KIAA1755 MUTATED KIAA1755 WILD-TYPE
  CLUS_1                1                 19
  CLUS_2                7                 84
  CLUS_3                4                 53
D56V11, multiclass
        clus
vv       KIAA1755 MUTATED KIAA1755 WILD-TYPE
  CLUS_1                5                 41
  CLUS_2                1                 34
  CLUS_3                1                 23
D56V12, multiclass
        clus
vv       KIAA1755 MUTATED KIAA1755 WILD-TYPE
  CLUS_1                0                 11
  CLUS_2                3                 43
  CLUS_3                4                 44

Clustering(57) Variable = OVCH1 MUTATION ANALYSIS
D57V1, multiclass
        clus
vv       OVCH1 MUTATED OVCH1 WILD-TYPE
  CLUS_1             0               5
  CLUS_2             2               7
  CLUS_3             2              10
  CLUS_4             1               5
D57V2, multiclass
        clus
vv       OVCH1 MUTATED OVCH1 WILD-TYPE
  CLUS_1             1               6
  CLUS_2             2              11
  CLUS_3             2              10
D57V3, multiclass
        clus
vv       OVCH1 MUTATED OVCH1 WILD-TYPE
  CLUS_1             3              67
  CLUS_2             8              60
  CLUS_3             3              31
D57V4, multiclass
        clus
vv       OVCH1 MUTATED OVCH1 WILD-TYPE
  CLUS_1             3              31
  CLUS_2             4              29
  CLUS_3             4              39
D57V5, multiclass
        clus
vv       OVCH1 MUTATED OVCH1 WILD-TYPE
  CLUS_1             4              69
  CLUS_2             1              22
  CLUS_3             5              34
D57V6, multiclass
        clus
vv       OVCH1 MUTATED OVCH1 WILD-TYPE
  CLUS_1             5              72
  CLUS_2             2              24
  CLUS_3             3              29
D57V7, multiclass
        clus
vv       OVCH1 MUTATED OVCH1 WILD-TYPE
  CLUS_1             3              46
  CLUS_2             7              62
  CLUS_3             4              49
D57V8, multiclass
        clus
vv       OVCH1 MUTATED OVCH1 WILD-TYPE
  CLUS_1             6              44
  CLUS_2             4              64
  CLUS_3             4              49
D57V9, multiclass
        clus
vv       OVCH1 MUTATED OVCH1 WILD-TYPE
  CLUS_1             4              55
  CLUS_2             8              72
  CLUS_3             2              27
D57V10, multiclass
        clus
vv       OVCH1 MUTATED OVCH1 WILD-TYPE
  CLUS_1             0              20
  CLUS_2            10              81
  CLUS_3             4              53
D57V11, multiclass
        clus
vv       OVCH1 MUTATED OVCH1 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             2              33
  CLUS_3             2              22
D57V12, multiclass
        clus
vv       OVCH1 MUTATED OVCH1 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             3              43
  CLUS_3             4              44

Clustering(58) Variable = PJA1 MUTATION ANALYSIS
D58V1, multiclass
[1] "Remove cluster labels:" "PJA1 MUTATED"          
clus
  PJA1 MUTATED PJA1 WILD-TYPE 
             2             30 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2656 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2659     TCGA-44-2661     TCGA-44-2662 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-2665     TCGA-44-2666     TCGA-44-2668     TCGA-44-3918 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-55-1592     TCGA-55-1594 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-55-1595     TCGA-55-1596     TCGA-64-1677     TCGA-64-1678 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-64-1680     TCGA-67-3770     TCGA-67-3771     TCGA-67-3772 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-67-3773     TCGA-67-3774 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
D58V2, multiclass
[1] "Remove cluster labels:" "PJA1 MUTATED"          
clus
  PJA1 MUTATED PJA1 WILD-TYPE 
             2             30 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2656 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2659     TCGA-44-2661     TCGA-44-2662 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-2665     TCGA-44-2666     TCGA-44-2668     TCGA-44-3918 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-55-1592     TCGA-55-1594 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-55-1595     TCGA-55-1596     TCGA-64-1677     TCGA-64-1678 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-64-1680     TCGA-67-3770     TCGA-67-3771     TCGA-67-3772 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
    TCGA-67-3773     TCGA-67-3774 
"PJA1 WILD-TYPE" "PJA1 WILD-TYPE" 
D58V3, multiclass
        clus
vv       PJA1 MUTATED PJA1 WILD-TYPE
  CLUS_1            3             67
  CLUS_2            3             65
  CLUS_3            2             32
D58V4, multiclass
        clus
vv       PJA1 MUTATED PJA1 WILD-TYPE
  CLUS_1            1             33
  CLUS_2            1             32
  CLUS_3            2             41
D58V5, multiclass
        clus
vv       PJA1 MUTATED PJA1 WILD-TYPE
  CLUS_1            2             71
  CLUS_2            1             22
  CLUS_3            2             37
D58V6, multiclass
        clus
vv       PJA1 MUTATED PJA1 WILD-TYPE
  CLUS_1            2             75
  CLUS_2            0             26
  CLUS_3            3             29
D58V7, multiclass
        clus
vv       PJA1 MUTATED PJA1 WILD-TYPE
  CLUS_1            0             49
  CLUS_2            4             65
  CLUS_3            4             49
D58V8, multiclass
        clus
vv       PJA1 MUTATED PJA1 WILD-TYPE
  CLUS_1            3             47
  CLUS_2            1             67
  CLUS_3            4             49
D58V9, multiclass
        clus
vv       PJA1 MUTATED PJA1 WILD-TYPE
  CLUS_1            1             58
  CLUS_2            5             75
  CLUS_3            1             28
D58V10, multiclass
        clus
vv       PJA1 MUTATED PJA1 WILD-TYPE
  CLUS_1            0             20
  CLUS_2            6             85
  CLUS_3            1             56
D58V11, multiclass
        clus
vv       PJA1 MUTATED PJA1 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            3             32
  CLUS_3            0             24
D58V12, multiclass
        clus
vv       PJA1 MUTATED PJA1 WILD-TYPE
  CLUS_1            0             11
  CLUS_2            3             43
  CLUS_3            1             47

Clustering(59) Variable = SUN1 MUTATION ANALYSIS
D59V1, multiclass
[1] "Remove cluster labels:" "SUN1 MUTATED"          
clus
  SUN1 MUTATED SUN1 WILD-TYPE 
             1             31 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2656 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2661     TCGA-44-2662     TCGA-44-2665 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-44-2666     TCGA-44-2668     TCGA-44-3398     TCGA-44-3918 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-55-1592     TCGA-55-1594 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-55-1595     TCGA-55-1596     TCGA-64-1676     TCGA-64-1677 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-64-1678     TCGA-64-1680     TCGA-67-3770     TCGA-67-3771 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
D59V2, multiclass
[1] "Remove cluster labels:" "SUN1 MUTATED"          
clus
  SUN1 MUTATED SUN1 WILD-TYPE 
             1             31 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2656 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2661     TCGA-44-2662     TCGA-44-2665 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-44-2666     TCGA-44-2668     TCGA-44-3398     TCGA-44-3918 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-55-1592     TCGA-55-1594 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-55-1595     TCGA-55-1596     TCGA-64-1676     TCGA-64-1677 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-64-1678     TCGA-64-1680     TCGA-67-3770     TCGA-67-3771 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"SUN1 WILD-TYPE" "SUN1 WILD-TYPE" "SUN1 WILD-TYPE" 
D59V3, multiclass
        clus
vv       SUN1 MUTATED SUN1 WILD-TYPE
  CLUS_1            4             66
  CLUS_2            3             65
  CLUS_3            1             33
D59V4, multiclass
        clus
vv       SUN1 MUTATED SUN1 WILD-TYPE
  CLUS_1            1             33
  CLUS_2            2             31
  CLUS_3            1             42
D59V5, multiclass
        clus
vv       SUN1 MUTATED SUN1 WILD-TYPE
  CLUS_1            3             70
  CLUS_2            2             21
  CLUS_3            0             39
D59V6, multiclass
        clus
vv       SUN1 MUTATED SUN1 WILD-TYPE
  CLUS_1            2             75
  CLUS_2            2             24
  CLUS_3            1             31
D59V7, multiclass
        clus
vv       SUN1 MUTATED SUN1 WILD-TYPE
  CLUS_1            0             49
  CLUS_2            4             65
  CLUS_3            4             49
D59V8, multiclass
        clus
vv       SUN1 MUTATED SUN1 WILD-TYPE
  CLUS_1            3             47
  CLUS_2            2             66
  CLUS_3            3             50
D59V9, multiclass
        clus
vv       SUN1 MUTATED SUN1 WILD-TYPE
  CLUS_1            0             59
  CLUS_2            6             74
  CLUS_3            1             28
D59V10, multiclass
        clus
vv       SUN1 MUTATED SUN1 WILD-TYPE
  CLUS_1            1             19
  CLUS_2            6             85
  CLUS_3            0             57
D59V11, multiclass
        clus
vv       SUN1 MUTATED SUN1 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            1             34
  CLUS_3            2             22
D59V12, multiclass
        clus
vv       SUN1 MUTATED SUN1 WILD-TYPE
  CLUS_1            1             10
  CLUS_2            2             44
  CLUS_3            1             47

Clustering(60) Variable = RUFY2 MUTATION ANALYSIS
D60V1, multiclass
[1] "Remove cluster labels:" "RUFY2 MUTATED"         
clus
  RUFY2 MUTATED RUFY2 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2666      TCGA-44-3398      TCGA-44-3918 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
D60V2, multiclass
[1] "Remove cluster labels:" "RUFY2 MUTATED"         
clus
  RUFY2 MUTATED RUFY2 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2666      TCGA-44-3398      TCGA-44-3918 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" "RUFY2 WILD-TYPE" 
D60V3, multiclass
        clus
vv       RUFY2 MUTATED RUFY2 WILD-TYPE
  CLUS_1             4              66
  CLUS_2             2              66
  CLUS_3             1              33
D60V4, multiclass
        clus
vv       RUFY2 MUTATED RUFY2 WILD-TYPE
  CLUS_1             1              33
  CLUS_2             2              31
  CLUS_3             3              40
D60V5, multiclass
        clus
vv       RUFY2 MUTATED RUFY2 WILD-TYPE
  CLUS_1             2              71
  CLUS_2             1              22
  CLUS_3             3              36
D60V6, multiclass
        clus
vv       RUFY2 MUTATED RUFY2 WILD-TYPE
  CLUS_1             2              75
  CLUS_2             1              25
  CLUS_3             3              29
D60V7, multiclass
        clus
vv       RUFY2 MUTATED RUFY2 WILD-TYPE
  CLUS_1             0              49
  CLUS_2             3              66
  CLUS_3             4              49
D60V8, multiclass
        clus
vv       RUFY2 MUTATED RUFY2 WILD-TYPE
  CLUS_1             2              48
  CLUS_2             1              67
  CLUS_3             4              49
D60V9, multiclass
        clus
vv       RUFY2 MUTATED RUFY2 WILD-TYPE
  CLUS_1             1              58
  CLUS_2             3              77
  CLUS_3             2              27
D60V10, multiclass
        clus
vv       RUFY2 MUTATED RUFY2 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             4              87
  CLUS_3             2              55
D60V11, multiclass
        clus
vv       RUFY2 MUTATED RUFY2 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              35
  CLUS_3             2              22
D60V12, multiclass
        clus
vv       RUFY2 MUTATED RUFY2 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             2              44
  CLUS_3             3              45

Clustering(61) Variable = PABPC3 MUTATION ANALYSIS
D61V1, multiclass
[1] "Remove cluster labels:" "PABPC3 MUTATED"        
clus
  PABPC3 MUTATED PABPC3 WILD-TYPE 
               2               30 
      TCGA-05-4249       TCGA-05-4250       TCGA-35-3615       TCGA-35-4122 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-35-4123       TCGA-44-2655       TCGA-44-2656       TCGA-44-2657 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-2659       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3398       TCGA-44-3918 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3772 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
D61V2, multiclass
[1] "Remove cluster labels:" "PABPC3 MUTATED"        
clus
  PABPC3 MUTATED PABPC3 WILD-TYPE 
               2               30 
      TCGA-05-4249       TCGA-05-4250       TCGA-35-3615       TCGA-35-4122 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-35-4123       TCGA-44-2655       TCGA-44-2656       TCGA-44-2657 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-2659       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3398       TCGA-44-3918 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3772 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"PABPC3 WILD-TYPE" "PABPC3 WILD-TYPE" 
D61V3, multiclass
        clus
vv       PABPC3 MUTATED PABPC3 WILD-TYPE
  CLUS_1              4               66
  CLUS_2              2               66
  CLUS_3              3               31
D61V4, multiclass
        clus
vv       PABPC3 MUTATED PABPC3 WILD-TYPE
  CLUS_1              2               32
  CLUS_2              3               30
  CLUS_3              0               43
D61V5, multiclass
        clus
vv       PABPC3 MUTATED PABPC3 WILD-TYPE
  CLUS_1              4               69
  CLUS_2              1               22
  CLUS_3              2               37
D61V6, multiclass
        clus
vv       PABPC3 MUTATED PABPC3 WILD-TYPE
  CLUS_1              4               73
  CLUS_2              2               24
  CLUS_3              1               31
D61V7, multiclass
        clus
vv       PABPC3 MUTATED PABPC3 WILD-TYPE
  CLUS_1              4               45
  CLUS_2              3               66
  CLUS_3              2               51
D61V8, multiclass
        clus
vv       PABPC3 MUTATED PABPC3 WILD-TYPE
  CLUS_1              2               48
  CLUS_2              5               63
  CLUS_3              2               51
D61V9, multiclass
        clus
vv       PABPC3 MUTATED PABPC3 WILD-TYPE
  CLUS_1              5               54
  CLUS_2              3               77
  CLUS_3              0               29
D61V10, multiclass
        clus
vv       PABPC3 MUTATED PABPC3 WILD-TYPE
  CLUS_1              0               20
  CLUS_2              3               88
  CLUS_3              5               52
D61V11, multiclass
        clus
vv       PABPC3 MUTATED PABPC3 WILD-TYPE
  CLUS_1              4               42
  CLUS_2              1               34
  CLUS_3              0               24
D61V12, multiclass
        clus
vv       PABPC3 MUTATED PABPC3 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              2               44
  CLUS_3              3               45

Clustering(62) Variable = STXBP5L MUTATION ANALYSIS
D62V1, multiclass
[1] "Remove cluster labels:" "STXBP5L MUTATED"       
clus
  STXBP5L MUTATED STXBP5L WILD-TYPE 
                2                30 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2656 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3398        TCGA-44-3918 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-3919        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-55-1596        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-64-1680        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
D62V2, multiclass
[1] "Remove cluster labels:" "STXBP5L MUTATED"       
clus
  STXBP5L MUTATED STXBP5L WILD-TYPE 
                2                30 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2656 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3398        TCGA-44-3918 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-44-3919        TCGA-55-1592        TCGA-55-1594        TCGA-55-1595 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-55-1596        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-64-1680        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774 
"STXBP5L WILD-TYPE" "STXBP5L WILD-TYPE" 
D62V3, multiclass
        clus
vv       STXBP5L MUTATED STXBP5L WILD-TYPE
  CLUS_1               6                64
  CLUS_2               3                65
  CLUS_3               3                31
D62V4, multiclass
        clus
vv       STXBP5L MUTATED STXBP5L WILD-TYPE
  CLUS_1               0                34
  CLUS_2               4                29
  CLUS_3               4                39
D62V5, multiclass
        clus
vv       STXBP5L MUTATED STXBP5L WILD-TYPE
  CLUS_1               5                68
  CLUS_2               2                21
  CLUS_3               4                35
D62V6, multiclass
        clus
vv       STXBP5L MUTATED STXBP5L WILD-TYPE
  CLUS_1               6                71
  CLUS_2               3                23
  CLUS_3               2                30
D62V7, multiclass
        clus
vv       STXBP5L MUTATED STXBP5L WILD-TYPE
  CLUS_1               3                46
  CLUS_2               7                62
  CLUS_3               2                51
D62V8, multiclass
        clus
vv       STXBP5L MUTATED STXBP5L WILD-TYPE
  CLUS_1               5                45
  CLUS_2               6                62
  CLUS_3               1                52
D62V9, multiclass
        clus
vv       STXBP5L MUTATED STXBP5L WILD-TYPE
  CLUS_1               7                52
  CLUS_2               4                76
  CLUS_3               1                28
D62V10, multiclass
        clus
vv       STXBP5L MUTATED STXBP5L WILD-TYPE
  CLUS_1               1                19
  CLUS_2               5                86
  CLUS_3               6                51
D62V11, multiclass
        clus
vv       STXBP5L MUTATED STXBP5L WILD-TYPE
  CLUS_1               5                41
  CLUS_2               1                34
  CLUS_3               1                23
D62V12, multiclass
        clus
vv       STXBP5L MUTATED STXBP5L WILD-TYPE
  CLUS_1               0                11
  CLUS_2               2                44
  CLUS_3               5                43

Clustering(63) Variable = ELTD1 MUTATION ANALYSIS
D63V1, multiclass
        clus
vv       ELTD1 MUTATED ELTD1 WILD-TYPE
  CLUS_1             0               5
  CLUS_2             2               7
  CLUS_3             0              12
  CLUS_4             1               5
D63V2, multiclass
        clus
vv       ELTD1 MUTATED ELTD1 WILD-TYPE
  CLUS_1             1               6
  CLUS_2             1              12
  CLUS_3             1              11
D63V3, multiclass
        clus
vv       ELTD1 MUTATED ELTD1 WILD-TYPE
  CLUS_1             8              62
  CLUS_2             5              63
  CLUS_3             2              32
D63V4, multiclass
        clus
vv       ELTD1 MUTATED ELTD1 WILD-TYPE
  CLUS_1             3              31
  CLUS_2             7              26
  CLUS_3             1              42
D63V5, multiclass
        clus
vv       ELTD1 MUTATED ELTD1 WILD-TYPE
  CLUS_1             9              64
  CLUS_2             0              23
  CLUS_3             5              34
D63V6, multiclass
        clus
vv       ELTD1 MUTATED ELTD1 WILD-TYPE
  CLUS_1             8              69
  CLUS_2             2              24
  CLUS_3             4              28
D63V7, multiclass
        clus
vv       ELTD1 MUTATED ELTD1 WILD-TYPE
  CLUS_1             0              49
  CLUS_2            11              58
  CLUS_3             4              49
D63V8, multiclass
        clus
vv       ELTD1 MUTATED ELTD1 WILD-TYPE
  CLUS_1             9              41
  CLUS_2             1              67
  CLUS_3             5              48
D63V9, multiclass
        clus
vv       ELTD1 MUTATED ELTD1 WILD-TYPE
  CLUS_1             2              57
  CLUS_2             9              71
  CLUS_3             3              26
D63V10, multiclass
        clus
vv       ELTD1 MUTATED ELTD1 WILD-TYPE
  CLUS_1             0              20
  CLUS_2            12              79
  CLUS_3             2              55
D63V11, multiclass
        clus
vv       ELTD1 MUTATED ELTD1 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             6              29
  CLUS_3             2              22
D63V12, multiclass
        clus
vv       ELTD1 MUTATED ELTD1 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             9              37
  CLUS_3             1              47

Clustering(64) Variable = KRT28 MUTATION ANALYSIS
D64V1, multiclass
[1] "Remove cluster labels:" "KRT28 MUTATED"         
clus
  KRT28 MUTATED KRT28 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
D64V2, multiclass
[1] "Remove cluster labels:" "KRT28 MUTATED"         
clus
  KRT28 MUTATED KRT28 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"KRT28 WILD-TYPE" "KRT28 WILD-TYPE" "KRT28 WILD-TYPE" 
D64V3, multiclass
        clus
vv       KRT28 MUTATED KRT28 WILD-TYPE
  CLUS_1             4              66
  CLUS_2             2              66
  CLUS_3             1              33
D64V4, multiclass
        clus
vv       KRT28 MUTATED KRT28 WILD-TYPE
  CLUS_1             2              32
  CLUS_2             0              33
  CLUS_3             3              40
D64V5, multiclass
        clus
vv       KRT28 MUTATED KRT28 WILD-TYPE
  CLUS_1             5              68
  CLUS_2             0              23
  CLUS_3             1              38
D64V6, multiclass
        clus
vv       KRT28 MUTATED KRT28 WILD-TYPE
  CLUS_1             5              72
  CLUS_2             0              26
  CLUS_3             1              31
D64V7, multiclass
        clus
vv       KRT28 MUTATED KRT28 WILD-TYPE
  CLUS_1             0              49
  CLUS_2             5              64
  CLUS_3             2              51
D64V8, multiclass
        clus
vv       KRT28 MUTATED KRT28 WILD-TYPE
  CLUS_1             2              48
  CLUS_2             2              66
  CLUS_3             3              50
D64V9, multiclass
        clus
vv       KRT28 MUTATED KRT28 WILD-TYPE
  CLUS_1             2              57
  CLUS_2             4              76
  CLUS_3             1              28
D64V10, multiclass
        clus
vv       KRT28 MUTATED KRT28 WILD-TYPE
  CLUS_1             1              19
  CLUS_2             5              86
  CLUS_3             1              56
D64V11, multiclass
        clus
vv       KRT28 MUTATED KRT28 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             2              33
  CLUS_3             2              22
D64V12, multiclass
        clus
vv       KRT28 MUTATED KRT28 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             3              43
  CLUS_3             2              46

Clustering(65) Variable = EPHA6 MUTATION ANALYSIS
D65V1, multiclass
        clus
vv       EPHA6 MUTATED EPHA6 WILD-TYPE
  CLUS_1             1               4
  CLUS_2             2               7
  CLUS_3             1              11
  CLUS_4             1               5
D65V2, multiclass
        clus
vv       EPHA6 MUTATED EPHA6 WILD-TYPE
  CLUS_1             2               5
  CLUS_2             2              11
  CLUS_3             1              11
D65V3, multiclass
        clus
vv       EPHA6 MUTATED EPHA6 WILD-TYPE
  CLUS_1             6              64
  CLUS_2            10              58
  CLUS_3             6              28
D65V4, multiclass
        clus
vv       EPHA6 MUTATED EPHA6 WILD-TYPE
  CLUS_1             3              31
  CLUS_2             3              30
  CLUS_3             5              38
D65V5, multiclass
        clus
vv       EPHA6 MUTATED EPHA6 WILD-TYPE
  CLUS_1             6              67
  CLUS_2             1              22
  CLUS_3             7              32
D65V6, multiclass
        clus
vv       EPHA6 MUTATED EPHA6 WILD-TYPE
  CLUS_1             5              72
  CLUS_2             3              23
  CLUS_3             6              26
D65V7, multiclass
        clus
vv       EPHA6 MUTATED EPHA6 WILD-TYPE
  CLUS_1             5              44
  CLUS_2             9              60
  CLUS_3             8              45
D65V8, multiclass
        clus
vv       EPHA6 MUTATED EPHA6 WILD-TYPE
  CLUS_1             7              43
  CLUS_2             7              61
  CLUS_3             8              45
D65V9, multiclass
        clus
vv       EPHA6 MUTATED EPHA6 WILD-TYPE
  CLUS_1             5              54
  CLUS_2            15              65
  CLUS_3             1              28
D65V10, multiclass
        clus
vv       EPHA6 MUTATED EPHA6 WILD-TYPE
  CLUS_1             0              20
  CLUS_2            17              74
  CLUS_3             4              53
D65V11, multiclass
        clus
vv       EPHA6 MUTATED EPHA6 WILD-TYPE
  CLUS_1             5              41
  CLUS_2             3              32
  CLUS_3             1              23
D65V12, multiclass
        clus
vv       EPHA6 MUTATED EPHA6 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             6              40
  CLUS_3             3              45

Clustering(66) Variable = OR10R2 MUTATION ANALYSIS
D66V1, multiclass
[1] "Remove cluster labels:" "OR10R2 MUTATED"        
clus
  OR10R2 MUTATED OR10R2 WILD-TYPE 
               2               30 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3398       TCGA-44-3919 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-44-4112       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-55-1596       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-64-1680       TCGA-67-3770       TCGA-67-3771       TCGA-67-3772 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
D66V2, multiclass
[1] "Remove cluster labels:" "OR10R2 MUTATED"        
clus
  OR10R2 MUTATED OR10R2 WILD-TYPE 
               2               30 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3398       TCGA-44-3919 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-44-4112       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-55-1596       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-64-1680       TCGA-67-3770       TCGA-67-3771       TCGA-67-3772 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
D66V3, multiclass
        clus
vv       OR10R2 MUTATED OR10R2 WILD-TYPE
  CLUS_1              4               66
  CLUS_2              5               63
  CLUS_3              1               33
D66V4, multiclass
        clus
vv       OR10R2 MUTATED OR10R2 WILD-TYPE
  CLUS_1              2               32
  CLUS_2              4               29
  CLUS_3              2               41
D66V5, multiclass
        clus
vv       OR10R2 MUTATED OR10R2 WILD-TYPE
  CLUS_1              4               69
  CLUS_2              1               22
  CLUS_3              4               35
D66V6, multiclass
        clus
vv       OR10R2 MUTATED OR10R2 WILD-TYPE
  CLUS_1              5               72
  CLUS_2              2               24
  CLUS_3              2               30
D66V7, multiclass
        clus
vv       OR10R2 MUTATED OR10R2 WILD-TYPE
  CLUS_1              1               48
  CLUS_2              5               64
  CLUS_3              4               49
D66V8, multiclass
        clus
vv       OR10R2 MUTATED OR10R2 WILD-TYPE
  CLUS_1              3               47
  CLUS_2              4               64
  CLUS_3              3               50
D66V9, multiclass
        clus
vv       OR10R2 MUTATED OR10R2 WILD-TYPE
  CLUS_1              1               58
  CLUS_2              6               74
  CLUS_3              3               26
D66V10, multiclass
        clus
vv       OR10R2 MUTATED OR10R2 WILD-TYPE
  CLUS_1              0               20
  CLUS_2              9               82
  CLUS_3              1               56
D66V11, multiclass
        clus
vv       OR10R2 MUTATED OR10R2 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              3               32
  CLUS_3              1               23
D66V12, multiclass
        clus
vv       OR10R2 MUTATED OR10R2 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              5               41
  CLUS_3              2               46

Clustering(67) Variable = TLR4 MUTATION ANALYSIS
D67V1, multiclass
[1] "Remove cluster labels:" "TLR4 MUTATED"          
clus
  TLR4 MUTATED TLR4 WILD-TYPE 
             1             31 
    TCGA-05-4244     TCGA-05-4249     TCGA-35-3615     TCGA-35-4122 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-35-4123     TCGA-44-2655     TCGA-44-2656     TCGA-44-2657 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-44-2659     TCGA-44-2661     TCGA-44-2662     TCGA-44-2665 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-44-2666     TCGA-44-2668     TCGA-44-3398     TCGA-44-3918 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-55-1592     TCGA-55-1594 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-55-1595     TCGA-55-1596     TCGA-64-1676     TCGA-64-1677 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-64-1678     TCGA-64-1680     TCGA-67-3770     TCGA-67-3771 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
D67V2, multiclass
[1] "Remove cluster labels:" "TLR4 MUTATED"          
clus
  TLR4 MUTATED TLR4 WILD-TYPE 
             1             31 
    TCGA-05-4244     TCGA-05-4249     TCGA-35-3615     TCGA-35-4122 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-35-4123     TCGA-44-2655     TCGA-44-2656     TCGA-44-2657 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-44-2659     TCGA-44-2661     TCGA-44-2662     TCGA-44-2665 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-44-2666     TCGA-44-2668     TCGA-44-3398     TCGA-44-3918 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-55-1592     TCGA-55-1594 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-55-1595     TCGA-55-1596     TCGA-64-1676     TCGA-64-1677 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-64-1678     TCGA-64-1680     TCGA-67-3770     TCGA-67-3771 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"TLR4 WILD-TYPE" "TLR4 WILD-TYPE" "TLR4 WILD-TYPE" 
D67V3, multiclass
        clus
vv       TLR4 MUTATED TLR4 WILD-TYPE
  CLUS_1            9             61
  CLUS_2           10             58
  CLUS_3            4             30
D67V4, multiclass
        clus
vv       TLR4 MUTATED TLR4 WILD-TYPE
  CLUS_1            3             31
  CLUS_2            8             25
  CLUS_3            6             37
D67V5, multiclass
        clus
vv       TLR4 MUTATED TLR4 WILD-TYPE
  CLUS_1           11             62
  CLUS_2            3             20
  CLUS_3            4             35
D67V6, multiclass
        clus
vv       TLR4 MUTATED TLR4 WILD-TYPE
  CLUS_1           12             65
  CLUS_2            4             22
  CLUS_3            2             30
D67V7, multiclass
        clus
vv       TLR4 MUTATED TLR4 WILD-TYPE
  CLUS_1            4             45
  CLUS_2           14             55
  CLUS_3            5             48
D67V8, multiclass
        clus
vv       TLR4 MUTATED TLR4 WILD-TYPE
  CLUS_1           10             40
  CLUS_2            6             62
  CLUS_3            7             46
D67V9, multiclass
        clus
vv       TLR4 MUTATED TLR4 WILD-TYPE
  CLUS_1            4             55
  CLUS_2           12             68
  CLUS_3            6             23
D67V10, multiclass
        clus
vv       TLR4 MUTATED TLR4 WILD-TYPE
  CLUS_1            2             18
  CLUS_2           16             75
  CLUS_3            4             53
D67V11, multiclass
        clus
vv       TLR4 MUTATED TLR4 WILD-TYPE
  CLUS_1            6             40
  CLUS_2            7             28
  CLUS_3            4             20
D67V12, multiclass
        clus
vv       TLR4 MUTATED TLR4 WILD-TYPE
  CLUS_1            1             10
  CLUS_2           11             35
  CLUS_3            5             43

Clustering(68) Variable = OR6F1 MUTATION ANALYSIS
D68V1, multiclass
        clus
vv       OR6F1 MUTATED OR6F1 WILD-TYPE
  CLUS_1             0               5
  CLUS_2             3               6
  CLUS_3             2              10
  CLUS_4             0               6
D68V2, multiclass
        clus
vv       OR6F1 MUTATED OR6F1 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             2              11
  CLUS_3             3               9
D68V3, multiclass
        clus
vv       OR6F1 MUTATED OR6F1 WILD-TYPE
  CLUS_1             2              68
  CLUS_2             6              62
  CLUS_3             2              32
D68V4, multiclass
        clus
vv       OR6F1 MUTATED OR6F1 WILD-TYPE
  CLUS_1             1              33
  CLUS_2             3              30
  CLUS_3             1              42
D68V5, multiclass
        clus
vv       OR6F1 MUTATED OR6F1 WILD-TYPE
  CLUS_1             4              69
  CLUS_2             0              23
  CLUS_3             1              38
D68V6, multiclass
        clus
vv       OR6F1 MUTATED OR6F1 WILD-TYPE
  CLUS_1             4              73
  CLUS_2             0              26
  CLUS_3             1              31
D68V7, multiclass
        clus
vv       OR6F1 MUTATED OR6F1 WILD-TYPE
  CLUS_1             4              45
  CLUS_2             6              63
  CLUS_3             0              53
D68V8, multiclass
        clus
vv       OR6F1 MUTATED OR6F1 WILD-TYPE
  CLUS_1             5              45
  CLUS_2             4              64
  CLUS_3             1              52
D68V9, multiclass
        clus
vv       OR6F1 MUTATED OR6F1 WILD-TYPE
  CLUS_1             4              55
  CLUS_2             4              76
  CLUS_3             1              28
D68V10, multiclass
        clus
vv       OR6F1 MUTATED OR6F1 WILD-TYPE
  CLUS_1             2              18
  CLUS_2             4              87
  CLUS_3             3              54
D68V11, multiclass
        clus
vv       OR6F1 MUTATED OR6F1 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             1              34
  CLUS_3             0              24
D68V12, multiclass
        clus
vv       OR6F1 MUTATED OR6F1 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             1              45
  CLUS_3             2              46

Clustering(69) Variable = THEMIS MUTATION ANALYSIS
D69V1, multiclass
        clus
vv       THEMIS MUTATED THEMIS WILD-TYPE
  CLUS_1              1                4
  CLUS_2              0                9
  CLUS_3              2               10
  CLUS_4              1                5
D69V2, multiclass
        clus
vv       THEMIS MUTATED THEMIS WILD-TYPE
  CLUS_1              1                6
  CLUS_2              2               11
  CLUS_3              1               11
D69V3, multiclass
        clus
vv       THEMIS MUTATED THEMIS WILD-TYPE
  CLUS_1              7               63
  CLUS_2              3               65
  CLUS_3              0               34
D69V4, multiclass
        clus
vv       THEMIS MUTATED THEMIS WILD-TYPE
  CLUS_1              1               33
  CLUS_2              3               30
  CLUS_3              0               43
D69V5, multiclass
        clus
vv       THEMIS MUTATED THEMIS WILD-TYPE
  CLUS_1              4               69
  CLUS_2              1               22
  CLUS_3              3               36
D69V6, multiclass
        clus
vv       THEMIS MUTATED THEMIS WILD-TYPE
  CLUS_1              5               72
  CLUS_2              1               25
  CLUS_3              2               30
D69V7, multiclass
        clus
vv       THEMIS MUTATED THEMIS WILD-TYPE
  CLUS_1              4               45
  CLUS_2              2               67
  CLUS_3              4               49
D69V8, multiclass
        clus
vv       THEMIS MUTATED THEMIS WILD-TYPE
  CLUS_1              2               48
  CLUS_2              5               63
  CLUS_3              3               50
D69V9, multiclass
        clus
vv       THEMIS MUTATED THEMIS WILD-TYPE
  CLUS_1              3               56
  CLUS_2              6               74
  CLUS_3              0               29
D69V10, multiclass
        clus
vv       THEMIS MUTATED THEMIS WILD-TYPE
  CLUS_1              0               20
  CLUS_2              6               85
  CLUS_3              3               54
D69V11, multiclass
        clus
vv       THEMIS MUTATED THEMIS WILD-TYPE
  CLUS_1              3               43
  CLUS_2              0               35
  CLUS_3              0               24
D69V12, multiclass
        clus
vv       THEMIS MUTATED THEMIS WILD-TYPE
  CLUS_1              0               11
  CLUS_2              0               46
  CLUS_3              3               45

Clustering(70) Variable = DACT1 MUTATION ANALYSIS
D70V1, multiclass
        clus
vv       DACT1 MUTATED DACT1 WILD-TYPE
  CLUS_1             0               5
  CLUS_2             0               9
  CLUS_3             1              11
  CLUS_4             2               4
D70V2, multiclass
        clus
vv       DACT1 MUTATED DACT1 WILD-TYPE
  CLUS_1             2               5
  CLUS_2             1              12
  CLUS_3             0              12
D70V3, multiclass
        clus
vv       DACT1 MUTATED DACT1 WILD-TYPE
  CLUS_1             5              65
  CLUS_2             3              65
  CLUS_3             2              32
D70V4, multiclass
        clus
vv       DACT1 MUTATED DACT1 WILD-TYPE
  CLUS_1             1              33
  CLUS_2             4              29
  CLUS_3             2              41
D70V5, multiclass
        clus
vv       DACT1 MUTATED DACT1 WILD-TYPE
  CLUS_1             3              70
  CLUS_2             3              20
  CLUS_3             3              36
D70V6, multiclass
        clus
vv       DACT1 MUTATED DACT1 WILD-TYPE
  CLUS_1             4              73
  CLUS_2             3              23
  CLUS_3             2              30
D70V7, multiclass
        clus
vv       DACT1 MUTATED DACT1 WILD-TYPE
  CLUS_1             1              48
  CLUS_2             6              63
  CLUS_3             3              50
D70V8, multiclass
        clus
vv       DACT1 MUTATED DACT1 WILD-TYPE
  CLUS_1             5              45
  CLUS_2             2              66
  CLUS_3             3              50
D70V9, multiclass
        clus
vv       DACT1 MUTATED DACT1 WILD-TYPE
  CLUS_1             3              56
  CLUS_2             6              74
  CLUS_3             1              28
D70V10, multiclass
        clus
vv       DACT1 MUTATED DACT1 WILD-TYPE
  CLUS_1             1              19
  CLUS_2             7              84
  CLUS_3             2              55
D70V11, multiclass
        clus
vv       DACT1 MUTATED DACT1 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             3              32
  CLUS_3             2              22
D70V12, multiclass
        clus
vv       DACT1 MUTATED DACT1 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             5              41
  CLUS_3             2              46

Clustering(71) Variable = APC MUTATION ANALYSIS
D71V1, multiclass
D71V2, multiclass
D71V3, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1           5            65
  CLUS_2           3            65
  CLUS_3           2            32
D71V4, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1           3            31
  CLUS_2           1            32
  CLUS_3           1            42
D71V5, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1           4            69
  CLUS_2           1            22
  CLUS_3           3            36
D71V6, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1           5            72
  CLUS_2           1            25
  CLUS_3           2            30
D71V7, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1           0            49
  CLUS_2           4            65
  CLUS_3           6            47
D71V8, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1           1            49
  CLUS_2           1            67
  CLUS_3           8            45
D71V9, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1           0            59
  CLUS_2           9            71
  CLUS_3           1            28
D71V10, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1           1            19
  CLUS_2           9            82
  CLUS_3           0            57
D71V11, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1           0            46
  CLUS_2           3            32
  CLUS_3           2            22
D71V12, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1           1            10
  CLUS_2           4            42
  CLUS_3           0            48

Clustering(72) Variable = SCG2 MUTATION ANALYSIS
D72V1, multiclass
[1] "Remove cluster labels:" "SCG2 MUTATED"          
clus
  SCG2 MUTATED SCG2 WILD-TYPE 
             1             31 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2657 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-44-2659     TCGA-44-2661     TCGA-44-2662     TCGA-44-2665 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-44-2666     TCGA-44-2668     TCGA-44-3398     TCGA-44-3918 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-55-1592     TCGA-55-1594 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-55-1595     TCGA-55-1596     TCGA-64-1676     TCGA-64-1677 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-64-1678     TCGA-64-1680     TCGA-67-3770     TCGA-67-3771 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
D72V2, multiclass
[1] "Remove cluster labels:" "SCG2 MUTATED"          
clus
  SCG2 MUTATED SCG2 WILD-TYPE 
             1             31 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2657 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-44-2659     TCGA-44-2661     TCGA-44-2662     TCGA-44-2665 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-44-2666     TCGA-44-2668     TCGA-44-3398     TCGA-44-3918 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-55-1592     TCGA-55-1594 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-55-1595     TCGA-55-1596     TCGA-64-1676     TCGA-64-1677 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-64-1678     TCGA-64-1680     TCGA-67-3770     TCGA-67-3771 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"SCG2 WILD-TYPE" "SCG2 WILD-TYPE" "SCG2 WILD-TYPE" 
D72V3, multiclass
        clus
vv       SCG2 MUTATED SCG2 WILD-TYPE
  CLUS_1            2             68
  CLUS_2            2             66
  CLUS_3            4             30
D72V4, multiclass
        clus
vv       SCG2 MUTATED SCG2 WILD-TYPE
  CLUS_1            2             32
  CLUS_2            3             30
  CLUS_3            1             42
D72V5, multiclass
        clus
vv       SCG2 MUTATED SCG2 WILD-TYPE
  CLUS_1            3             70
  CLUS_2            2             21
  CLUS_3            2             37
D72V6, multiclass
        clus
vv       SCG2 MUTATED SCG2 WILD-TYPE
  CLUS_1            2             75
  CLUS_2            3             23
  CLUS_3            2             30
D72V7, multiclass
        clus
vv       SCG2 MUTATED SCG2 WILD-TYPE
  CLUS_1            1             48
  CLUS_2            3             66
  CLUS_3            4             49
D72V8, multiclass
        clus
vv       SCG2 MUTATED SCG2 WILD-TYPE
  CLUS_1            2             48
  CLUS_2            2             66
  CLUS_3            4             49
D72V9, multiclass
        clus
vv       SCG2 MUTATED SCG2 WILD-TYPE
  CLUS_1            2             57
  CLUS_2            5             75
  CLUS_3            1             28
D72V10, multiclass
        clus
vv       SCG2 MUTATED SCG2 WILD-TYPE
  CLUS_1            0             20
  CLUS_2            6             85
  CLUS_3            2             55
D72V11, multiclass
        clus
vv       SCG2 MUTATED SCG2 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            2             33
  CLUS_3            1             23
D72V12, multiclass
        clus
vv       SCG2 MUTATED SCG2 WILD-TYPE
  CLUS_1            0             11
  CLUS_2            3             43
  CLUS_3            2             46

Clustering(73) Variable = BRE MUTATION ANALYSIS
D73V1, multiclass
[1] "Remove cluster labels:" "BRE MUTATED"           
clus
  BRE MUTATED BRE WILD-TYPE 
            2            30 
   TCGA-05-4244    TCGA-05-4249    TCGA-05-4250    TCGA-35-3615    TCGA-35-4122 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-35-4123    TCGA-44-2655    TCGA-44-2657    TCGA-44-2661    TCGA-44-2662 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3398    TCGA-44-3918 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-44-3919    TCGA-44-4112    TCGA-55-1592    TCGA-55-1594    TCGA-55-1595 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-55-1596    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773    TCGA-67-3774 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
D73V2, multiclass
[1] "Remove cluster labels:" "BRE MUTATED"           
clus
  BRE MUTATED BRE WILD-TYPE 
            2            30 
   TCGA-05-4244    TCGA-05-4249    TCGA-05-4250    TCGA-35-3615    TCGA-35-4122 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-35-4123    TCGA-44-2655    TCGA-44-2657    TCGA-44-2661    TCGA-44-2662 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3398    TCGA-44-3918 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-44-3919    TCGA-44-4112    TCGA-55-1592    TCGA-55-1594    TCGA-55-1595 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-55-1596    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773    TCGA-67-3774 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
D73V3, multiclass
        clus
vv       BRE MUTATED BRE WILD-TYPE
  CLUS_1           2            68
  CLUS_2           1            67
  CLUS_3           1            33
D73V4, multiclass
        clus
vv       BRE MUTATED BRE WILD-TYPE
  CLUS_1           0            34
  CLUS_2           3            30
  CLUS_3           0            43
D73V5, multiclass
[1] "Remove cluster labels:" "BRE MUTATED"           
clus
  BRE MUTATED BRE WILD-TYPE 
            2           133 
   TCGA-05-4244    TCGA-05-4249    TCGA-05-4250    TCGA-05-4384    TCGA-05-4397 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-05-4398    TCGA-05-4402    TCGA-05-4405    TCGA-05-4410    TCGA-05-4417 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-05-4418    TCGA-05-4420    TCGA-05-4422    TCGA-05-4426    TCGA-05-4427 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-05-4430    TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-05-5429    TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-35-5375    TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4629 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-38-6178    TCGA-44-2657    TCGA-44-2661    TCGA-44-2665    TCGA-44-2668 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-44-3396    TCGA-44-3398    TCGA-44-3918    TCGA-44-3919    TCGA-44-4112 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-44-5643    TCGA-44-5645    TCGA-44-6144    TCGA-44-6145    TCGA-44-6146 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-44-6147    TCGA-44-6148    TCGA-44-6774    TCGA-44-6775    TCGA-44-6776 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-44-6777    TCGA-44-6778    TCGA-44-6779    TCGA-49-4486    TCGA-49-4487 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-49-4488    TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-49-4507    TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-49-6743    TCGA-49-6744    TCGA-49-6745    TCGA-49-6767    TCGA-50-5044 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-50-5045    TCGA-50-5049    TCGA-50-5051    TCGA-50-5066    TCGA-50-5068 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-50-5072    TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6712    TCGA-64-1676 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-64-1677    TCGA-64-1678    TCGA-64-1680    TCGA-64-5774    TCGA-64-5778 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-64-5779    TCGA-64-5781    TCGA-64-5815    TCGA-67-3771    TCGA-67-6215 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-67-6216    TCGA-67-6217    TCGA-71-6725    TCGA-73-4658    TCGA-73-4659 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-75-5122    TCGA-75-5125 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-75-6203    TCGA-75-6205    TCGA-75-6206    TCGA-75-6207    TCGA-75-6211 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-75-6212    TCGA-80-5611    TCGA-86-6562    TCGA-91-6828    TCGA-91-6829 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
D73V6, multiclass
[1] "Remove cluster labels:" "BRE MUTATED"           
clus
  BRE MUTATED BRE WILD-TYPE 
            2           133 
   TCGA-05-4244    TCGA-05-4249    TCGA-05-4250    TCGA-05-4384    TCGA-05-4397 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-05-4398    TCGA-05-4402    TCGA-05-4405    TCGA-05-4410    TCGA-05-4417 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-05-4418    TCGA-05-4420    TCGA-05-4422    TCGA-05-4426    TCGA-05-4427 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-05-4430    TCGA-05-4434    TCGA-05-5420    TCGA-05-5423    TCGA-05-5425 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-05-5429    TCGA-05-5715    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-35-5375    TCGA-38-4625    TCGA-38-4626    TCGA-38-4627    TCGA-38-4629 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-38-6178    TCGA-44-2657    TCGA-44-2661    TCGA-44-2665    TCGA-44-2668 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-44-3396    TCGA-44-3398    TCGA-44-3918    TCGA-44-3919    TCGA-44-4112 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-44-5643    TCGA-44-5645    TCGA-44-6144    TCGA-44-6145    TCGA-44-6146 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-44-6147    TCGA-44-6148    TCGA-44-6774    TCGA-44-6775    TCGA-44-6776 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-44-6777    TCGA-44-6778    TCGA-44-6779    TCGA-49-4486    TCGA-49-4487 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-49-4488    TCGA-49-4494    TCGA-49-4501    TCGA-49-4505    TCGA-49-4506 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-49-4507    TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-49-6743    TCGA-49-6744    TCGA-49-6745    TCGA-49-6767    TCGA-50-5044 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-50-5045    TCGA-50-5049    TCGA-50-5051    TCGA-50-5066    TCGA-50-5068 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-50-5072    TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6712    TCGA-64-1676 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-64-1677    TCGA-64-1678    TCGA-64-1680    TCGA-64-5774    TCGA-64-5778 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-64-5779    TCGA-64-5781    TCGA-64-5815    TCGA-67-3771    TCGA-67-6215 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-67-6216    TCGA-67-6217    TCGA-71-6725    TCGA-73-4658    TCGA-73-4659 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-75-5122    TCGA-75-5125 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-75-6203    TCGA-75-6205    TCGA-75-6206    TCGA-75-6207    TCGA-75-6211 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-75-6212    TCGA-80-5611    TCGA-86-6562    TCGA-91-6828    TCGA-91-6829 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
D73V7, multiclass
        clus
vv       BRE MUTATED BRE WILD-TYPE
  CLUS_1           0            49
  CLUS_2           3            66
  CLUS_3           1            52
D73V8, multiclass
        clus
vv       BRE MUTATED BRE WILD-TYPE
  CLUS_1           2            48
  CLUS_2           2            66
  CLUS_3           0            53
D73V9, multiclass
        clus
vv       BRE MUTATED BRE WILD-TYPE
  CLUS_1           0            59
  CLUS_2           4            76
  CLUS_3           0            29
D73V10, multiclass
        clus
vv       BRE MUTATED BRE WILD-TYPE
  CLUS_1           0            20
  CLUS_2           4            87
  CLUS_3           0            57
D73V11, multiclass
[1] "Remove cluster labels:" "BRE MUTATED"           
clus
  BRE MUTATED BRE WILD-TYPE 
            2           103 
   TCGA-05-4384    TCGA-05-4390    TCGA-05-4405    TCGA-05-4410    TCGA-05-4415 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-05-4417    TCGA-05-4424    TCGA-05-4425    TCGA-05-4427    TCGA-05-4433 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428    TCGA-05-5429 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-05-5715    TCGA-35-5375    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-44-5643    TCGA-44-5645    TCGA-44-6144    TCGA-44-6145    TCGA-44-6146 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-44-6147    TCGA-44-6148    TCGA-44-6774    TCGA-44-6775    TCGA-44-6776 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-44-6777    TCGA-44-6778    TCGA-44-6779    TCGA-49-4487    TCGA-49-4488 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-49-4490    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-49-6767    TCGA-50-5044    TCGA-50-5045 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-50-5049    TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-50-5072    TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-50-5935    TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-50-5944    TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-50-6593    TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-5899 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-55-6543    TCGA-55-6642    TCGA-55-6712    TCGA-64-5774    TCGA-64-5778 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-64-5779    TCGA-64-5781    TCGA-64-5815    TCGA-67-4679    TCGA-67-6215 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-67-6216    TCGA-67-6217    TCGA-71-6725    TCGA-73-4658    TCGA-73-4676 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-75-5122    TCGA-75-5125    TCGA-75-5126    TCGA-75-5146    TCGA-75-5147 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-75-6203    TCGA-75-6205    TCGA-75-6206    TCGA-75-6207    TCGA-75-6211 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-75-6212    TCGA-80-5611    TCGA-86-6562    TCGA-91-6828    TCGA-91-6829 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
D73V12, multiclass
[1] "Remove cluster labels:" "BRE MUTATED"           
clus
  BRE MUTATED BRE WILD-TYPE 
            2           103 
   TCGA-05-4384    TCGA-05-4390    TCGA-05-4405    TCGA-05-4410    TCGA-05-4415 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-05-4417    TCGA-05-4424    TCGA-05-4425    TCGA-05-4427    TCGA-05-4433 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428    TCGA-05-5429 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-05-5715    TCGA-35-5375    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-44-5643    TCGA-44-5645    TCGA-44-6144    TCGA-44-6145    TCGA-44-6146 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-44-6147    TCGA-44-6148    TCGA-44-6774    TCGA-44-6775    TCGA-44-6776 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-44-6777    TCGA-44-6778    TCGA-44-6779    TCGA-49-4487    TCGA-49-4488 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-49-4490    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-49-6767    TCGA-50-5044    TCGA-50-5045 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-50-5049    TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-50-5072    TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-50-5935    TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-50-5944    TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-50-6593    TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-5899 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-55-6543    TCGA-55-6642    TCGA-55-6712    TCGA-64-5774    TCGA-64-5778 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-64-5779    TCGA-64-5781    TCGA-64-5815    TCGA-67-4679    TCGA-67-6215 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-67-6216    TCGA-67-6217    TCGA-71-6725    TCGA-73-4658    TCGA-73-4676 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-75-5122    TCGA-75-5125    TCGA-75-5126    TCGA-75-5146    TCGA-75-5147 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-75-6203    TCGA-75-6205    TCGA-75-6206    TCGA-75-6207    TCGA-75-6211 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-75-6212    TCGA-80-5611    TCGA-86-6562    TCGA-91-6828    TCGA-91-6829 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 
   TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"BRE WILD-TYPE" "BRE WILD-TYPE" "BRE WILD-TYPE" 

Clustering(74) Variable = SERPINB13 MUTATION ANALYSIS
D74V1, multiclass
[1] "Remove cluster labels:" "SERPINB13 MUTATED"     
clus
  SERPINB13 MUTATED SERPINB13 WILD-TYPE 
                  1                  31 
         TCGA-05-4244          TCGA-05-4249          TCGA-05-4250 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-35-3615          TCGA-35-4122          TCGA-35-4123 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-3398          TCGA-44-3918          TCGA-44-3919 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-4112          TCGA-55-1592          TCGA-55-1594 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-55-1595          TCGA-55-1596          TCGA-64-1676 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3772          TCGA-67-3773 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-67-3774 
"SERPINB13 WILD-TYPE" 
D74V2, multiclass
[1] "Remove cluster labels:" "SERPINB13 MUTATED"     
clus
  SERPINB13 MUTATED SERPINB13 WILD-TYPE 
                  1                  31 
         TCGA-05-4244          TCGA-05-4249          TCGA-05-4250 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-35-3615          TCGA-35-4122          TCGA-35-4123 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2659          TCGA-44-2661          TCGA-44-2662 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-3398          TCGA-44-3918          TCGA-44-3919 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-44-4112          TCGA-55-1592          TCGA-55-1594 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-55-1595          TCGA-55-1596          TCGA-64-1676 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-64-1677          TCGA-64-1678          TCGA-64-1680 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-67-3770          TCGA-67-3772          TCGA-67-3773 
"SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" "SERPINB13 WILD-TYPE" 
         TCGA-67-3774 
"SERPINB13 WILD-TYPE" 
D74V3, multiclass
        clus
vv       SERPINB13 MUTATED SERPINB13 WILD-TYPE
  CLUS_1                 3                  67
  CLUS_2                 3                  65
  CLUS_3                 3                  31
D74V4, multiclass
        clus
vv       SERPINB13 MUTATED SERPINB13 WILD-TYPE
  CLUS_1                 1                  33
  CLUS_2                 1                  32
  CLUS_3                 3                  40
D74V5, multiclass
        clus
vv       SERPINB13 MUTATED SERPINB13 WILD-TYPE
  CLUS_1                 4                  69
  CLUS_2                 1                  22
  CLUS_3                 3                  36
D74V6, multiclass
        clus
vv       SERPINB13 MUTATED SERPINB13 WILD-TYPE
  CLUS_1                 3                  74
  CLUS_2                 1                  25
  CLUS_3                 4                  28
D74V7, multiclass
        clus
vv       SERPINB13 MUTATED SERPINB13 WILD-TYPE
  CLUS_1                 1                  48
  CLUS_2                 3                  66
  CLUS_3                 5                  48
D74V8, multiclass
        clus
vv       SERPINB13 MUTATED SERPINB13 WILD-TYPE
  CLUS_1                 3                  47
  CLUS_2                 1                  67
  CLUS_3                 5                  48
D74V9, multiclass
        clus
vv       SERPINB13 MUTATED SERPINB13 WILD-TYPE
  CLUS_1                 1                  58
  CLUS_2                 5                  75
  CLUS_3                 2                  27
D74V10, multiclass
        clus
vv       SERPINB13 MUTATED SERPINB13 WILD-TYPE
  CLUS_1                 2                  18
  CLUS_2                 6                  85
  CLUS_3                 0                  57
D74V11, multiclass
        clus
vv       SERPINB13 MUTATED SERPINB13 WILD-TYPE
  CLUS_1                 0                  46
  CLUS_2                 2                  33
  CLUS_3                 3                  21
D74V12, multiclass
        clus
vv       SERPINB13 MUTATED SERPINB13 WILD-TYPE
  CLUS_1                 2                   9
  CLUS_2                 3                  43
  CLUS_3                 0                  48

Clustering(75) Variable = GATA3 MUTATION ANALYSIS
D75V1, multiclass
[1] "Remove cluster labels:" "GATA3 MUTATED"         
clus
  GATA3 MUTATED GATA3 WILD-TYPE 
              2              30 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2666      TCGA-44-2668      TCGA-44-3398 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-3918      TCGA-44-3919      TCGA-44-4112      TCGA-55-1592 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1595      TCGA-55-1596      TCGA-64-1677 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-64-1678      TCGA-67-3770      TCGA-67-3771      TCGA-67-3772 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-67-3773      TCGA-67-3774 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
D75V2, multiclass
[1] "Remove cluster labels:" "GATA3 MUTATED"         
clus
  GATA3 MUTATED GATA3 WILD-TYPE 
              2              30 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2666      TCGA-44-2668      TCGA-44-3398 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-3918      TCGA-44-3919      TCGA-44-4112      TCGA-55-1592 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1595      TCGA-55-1596      TCGA-64-1677 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-64-1678      TCGA-67-3770      TCGA-67-3771      TCGA-67-3772 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-67-3773      TCGA-67-3774 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
D75V3, multiclass
        clus
vv       GATA3 MUTATED GATA3 WILD-TYPE
  CLUS_1             4              66
  CLUS_2             2              66
  CLUS_3             0              34
D75V4, multiclass
[1] "Remove cluster labels:" "GATA3 MUTATED"         
clus
  GATA3 MUTATED GATA3 WILD-TYPE 
              2             108 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4396      TCGA-05-4405 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-05-4410      TCGA-05-4415      TCGA-05-4417      TCGA-05-4424 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-05-4425      TCGA-05-4427      TCGA-05-4433      TCGA-05-5420 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-05-5423      TCGA-05-5425      TCGA-05-5428      TCGA-05-5429 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-05-5715      TCGA-35-5375      TCGA-38-4631      TCGA-38-4632 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-38-6178      TCGA-44-2656      TCGA-44-2665      TCGA-44-2666 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3918      TCGA-44-4112      TCGA-44-5643 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-5645      TCGA-44-6144      TCGA-44-6145      TCGA-44-6146 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-6147      TCGA-44-6148      TCGA-44-6774      TCGA-44-6775 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-6776      TCGA-44-6777      TCGA-44-6778      TCGA-44-6779 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4512 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-49-4514      TCGA-49-6742      TCGA-49-6743      TCGA-49-6744 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-49-6745      TCGA-49-6767      TCGA-50-5044      TCGA-50-5045 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5055      TCGA-50-5066 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-5068      TCGA-50-5072      TCGA-50-5930      TCGA-50-5931 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-5932      TCGA-50-5933      TCGA-50-5935      TCGA-50-5936 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-5939      TCGA-50-5941      TCGA-50-5942      TCGA-50-5944 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-6590      TCGA-50-6591      TCGA-50-6592      TCGA-50-6593 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-6594      TCGA-50-6595      TCGA-50-6597      TCGA-55-5899 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-55-6543      TCGA-55-6642      TCGA-55-6712      TCGA-64-5774 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-64-5775      TCGA-64-5778      TCGA-64-5779      TCGA-64-5815 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-67-4679      TCGA-67-6215      TCGA-67-6216      TCGA-67-6217 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4658      TCGA-73-4676      TCGA-75-5122 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-75-5125      TCGA-75-5126      TCGA-75-5146      TCGA-75-5147 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-75-6203      TCGA-75-6205      TCGA-75-6207      TCGA-75-6211 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-75-6212      TCGA-80-5611      TCGA-86-6562      TCGA-91-6828 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-91-6829      TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
D75V5, multiclass
        clus
vv       GATA3 MUTATED GATA3 WILD-TYPE
  CLUS_1             2              71
  CLUS_2             1              22
  CLUS_3             2              37
D75V6, multiclass
        clus
vv       GATA3 MUTATED GATA3 WILD-TYPE
  CLUS_1             3              74
  CLUS_2             0              26
  CLUS_3             2              30
D75V7, multiclass
        clus
vv       GATA3 MUTATED GATA3 WILD-TYPE
  CLUS_1             2              47
  CLUS_2             3              66
  CLUS_3             1              52
D75V8, multiclass
        clus
vv       GATA3 MUTATED GATA3 WILD-TYPE
  CLUS_1             1              49
  CLUS_2             2              66
  CLUS_3             3              50
D75V9, multiclass
        clus
vv       GATA3 MUTATED GATA3 WILD-TYPE
  CLUS_1             2              57
  CLUS_2             2              78
  CLUS_3             2              27
D75V10, multiclass
        clus
vv       GATA3 MUTATED GATA3 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             5              86
  CLUS_3             1              56
D75V11, multiclass
[1] "Remove cluster labels:" "GATA3 MUTATED"         
clus
  GATA3 MUTATED GATA3 WILD-TYPE 
              2             103 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4396      TCGA-05-4405 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-05-4410      TCGA-05-4415      TCGA-05-4417      TCGA-05-4424 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-05-4425      TCGA-05-4427      TCGA-05-4433      TCGA-05-5420 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-05-5423      TCGA-05-5425      TCGA-05-5428      TCGA-05-5429 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-05-5715      TCGA-35-5375      TCGA-38-4631      TCGA-38-4632 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-38-6178      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4487      TCGA-49-4488 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-49-4490      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-49-6767 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-5044      TCGA-50-5045      TCGA-50-5049      TCGA-50-5051 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-5055      TCGA-50-5066      TCGA-50-5068      TCGA-50-5072 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-5930      TCGA-50-5931      TCGA-50-5932      TCGA-50-5933 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-5935      TCGA-50-5936      TCGA-50-5939      TCGA-50-5941 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-5942      TCGA-50-5944      TCGA-50-6590      TCGA-50-6591 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5815      TCGA-67-4679      TCGA-67-6215 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-73-4676      TCGA-75-5122      TCGA-75-5125      TCGA-75-5126 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-75-5146      TCGA-75-5147      TCGA-75-6203      TCGA-75-6205 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-75-6206      TCGA-75-6207      TCGA-75-6211      TCGA-75-6212 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-80-5611      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
D75V12, multiclass
[1] "Remove cluster labels:" "GATA3 MUTATED"         
clus
  GATA3 MUTATED GATA3 WILD-TYPE 
              2             103 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4396      TCGA-05-4405 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-05-4410      TCGA-05-4415      TCGA-05-4417      TCGA-05-4424 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-05-4425      TCGA-05-4427      TCGA-05-4433      TCGA-05-5420 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-05-5423      TCGA-05-5425      TCGA-05-5428      TCGA-05-5429 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-05-5715      TCGA-35-5375      TCGA-38-4631      TCGA-38-4632 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-38-6178      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4487      TCGA-49-4488 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-49-4490      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-49-6743      TCGA-49-6744      TCGA-49-6745      TCGA-49-6767 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-5044      TCGA-50-5045      TCGA-50-5049      TCGA-50-5051 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-5055      TCGA-50-5066      TCGA-50-5068      TCGA-50-5072 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-5930      TCGA-50-5931      TCGA-50-5932      TCGA-50-5933 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-5935      TCGA-50-5936      TCGA-50-5939      TCGA-50-5941 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-5942      TCGA-50-5944      TCGA-50-6590      TCGA-50-6591 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5815      TCGA-67-4679      TCGA-67-6215 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-73-4676      TCGA-75-5122      TCGA-75-5125      TCGA-75-5126 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-75-5146      TCGA-75-5147      TCGA-75-6203      TCGA-75-6205 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-75-6206      TCGA-75-6207      TCGA-75-6211      TCGA-75-6212 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-80-5611      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"GATA3 WILD-TYPE" "GATA3 WILD-TYPE" "GATA3 WILD-TYPE" 

Clustering(76) Variable = GNG2 MUTATION ANALYSIS
D76V1, multiclass
[1] "Remove cluster labels:" "GNG2 MUTATED"          
clus
  GNG2 MUTATED GNG2 WILD-TYPE 
             1             31 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2656 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2659     TCGA-44-2661     TCGA-44-2662 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-2665     TCGA-44-2666     TCGA-44-2668     TCGA-44-3398 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-3918     TCGA-44-3919     TCGA-44-4112     TCGA-55-1594 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-55-1595     TCGA-55-1596     TCGA-64-1676     TCGA-64-1677 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-64-1678     TCGA-64-1680     TCGA-67-3770     TCGA-67-3771 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
D76V2, multiclass
[1] "Remove cluster labels:" "GNG2 MUTATED"          
clus
  GNG2 MUTATED GNG2 WILD-TYPE 
             1             31 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2656 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2659     TCGA-44-2661     TCGA-44-2662 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-2665     TCGA-44-2666     TCGA-44-2668     TCGA-44-3398 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-44-3918     TCGA-44-3919     TCGA-44-4112     TCGA-55-1594 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-55-1595     TCGA-55-1596     TCGA-64-1676     TCGA-64-1677 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-64-1678     TCGA-64-1680     TCGA-67-3770     TCGA-67-3771 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"GNG2 WILD-TYPE" "GNG2 WILD-TYPE" "GNG2 WILD-TYPE" 
D76V3, multiclass
        clus
vv       GNG2 MUTATED GNG2 WILD-TYPE
  CLUS_1            3             67
  CLUS_2            1             67
  CLUS_3            0             34
D76V4, multiclass
        clus
vv       GNG2 MUTATED GNG2 WILD-TYPE
  CLUS_1            2             32
  CLUS_2            0             33
  CLUS_3            1             42
D76V5, multiclass
        clus
vv       GNG2 MUTATED GNG2 WILD-TYPE
  CLUS_1            1             72
  CLUS_2            1             22
  CLUS_3            1             38
D76V6, multiclass
        clus
vv       GNG2 MUTATED GNG2 WILD-TYPE
  CLUS_1            1             76
  CLUS_2            1             25
  CLUS_3            1             31
D76V7, multiclass
        clus
vv       GNG2 MUTATED GNG2 WILD-TYPE
  CLUS_1            0             49
  CLUS_2            0             69
  CLUS_3            4             49
D76V8, multiclass
        clus
vv       GNG2 MUTATED GNG2 WILD-TYPE
  CLUS_1            0             50
  CLUS_2            0             68
  CLUS_3            4             49
D76V9, multiclass
        clus
vv       GNG2 MUTATED GNG2 WILD-TYPE
  CLUS_1            0             59
  CLUS_2            4             76
  CLUS_3            0             29
D76V10, multiclass
        clus
vv       GNG2 MUTATED GNG2 WILD-TYPE
  CLUS_1            0             20
  CLUS_2            4             87
  CLUS_3            0             57
D76V11, multiclass
        clus
vv       GNG2 MUTATED GNG2 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            1             34
  CLUS_3            1             23
D76V12, multiclass
        clus
vv       GNG2 MUTATED GNG2 WILD-TYPE
  CLUS_1            0             11
  CLUS_2            2             44
  CLUS_3            1             47

Clustering(77) Variable = TSHZ3 MUTATION ANALYSIS
D77V1, multiclass
        clus
vv       TSHZ3 MUTATED TSHZ3 WILD-TYPE
  CLUS_1             1               4
  CLUS_2             4               5
  CLUS_3             0              12
  CLUS_4             2               4
D77V2, multiclass
        clus
vv       TSHZ3 MUTATED TSHZ3 WILD-TYPE
  CLUS_1             2               5
  CLUS_2             0              13
  CLUS_3             5               7
D77V3, multiclass
        clus
vv       TSHZ3 MUTATED TSHZ3 WILD-TYPE
  CLUS_1             9              61
  CLUS_2             8              60
  CLUS_3             8              26
D77V4, multiclass
        clus
vv       TSHZ3 MUTATED TSHZ3 WILD-TYPE
  CLUS_1             5              29
  CLUS_2             5              28
  CLUS_3             5              38
D77V5, multiclass
        clus
vv       TSHZ3 MUTATED TSHZ3 WILD-TYPE
  CLUS_1            11              62
  CLUS_2             2              21
  CLUS_3             8              31
D77V6, multiclass
        clus
vv       TSHZ3 MUTATED TSHZ3 WILD-TYPE
  CLUS_1            14              63
  CLUS_2             1              25
  CLUS_3             6              26
D77V7, multiclass
        clus
vv       TSHZ3 MUTATED TSHZ3 WILD-TYPE
  CLUS_1             2              47
  CLUS_2            15              54
  CLUS_3             8              45
D77V8, multiclass
        clus
vv       TSHZ3 MUTATED TSHZ3 WILD-TYPE
  CLUS_1             8              42
  CLUS_2             5              63
  CLUS_3            12              41
D77V9, multiclass
        clus
vv       TSHZ3 MUTATED TSHZ3 WILD-TYPE
  CLUS_1             7              52
  CLUS_2            15              65
  CLUS_3             3              26
D77V10, multiclass
        clus
vv       TSHZ3 MUTATED TSHZ3 WILD-TYPE
  CLUS_1             0              20
  CLUS_2            17              74
  CLUS_3             8              49
D77V11, multiclass
        clus
vv       TSHZ3 MUTATED TSHZ3 WILD-TYPE
  CLUS_1             4              42
  CLUS_2             7              28
  CLUS_3             3              21
D77V12, multiclass
        clus
vv       TSHZ3 MUTATED TSHZ3 WILD-TYPE
  CLUS_1             1              10
  CLUS_2             7              39
  CLUS_3             6              42

Clustering(78) Variable = GPR158 MUTATION ANALYSIS
D78V1, multiclass
[1] "Remove cluster labels:" "GPR158 MUTATED"        
clus
  GPR158 MUTATED GPR158 WILD-TYPE 
               2               30 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3772 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
D78V2, multiclass
[1] "Remove cluster labels:" "GPR158 MUTATED"        
clus
  GPR158 MUTATED GPR158 WILD-TYPE 
               2               30 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3772 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"GPR158 WILD-TYPE" "GPR158 WILD-TYPE" 
D78V3, multiclass
        clus
vv       GPR158 MUTATED GPR158 WILD-TYPE
  CLUS_1             10               60
  CLUS_2              3               65
  CLUS_3              5               29
D78V4, multiclass
        clus
vv       GPR158 MUTATED GPR158 WILD-TYPE
  CLUS_1              2               32
  CLUS_2              6               27
  CLUS_3              3               40
D78V5, multiclass
        clus
vv       GPR158 MUTATED GPR158 WILD-TYPE
  CLUS_1              6               67
  CLUS_2              1               22
  CLUS_3              6               33
D78V6, multiclass
        clus
vv       GPR158 MUTATED GPR158 WILD-TYPE
  CLUS_1              8               69
  CLUS_2              1               25
  CLUS_3              4               28
D78V7, multiclass
        clus
vv       GPR158 MUTATED GPR158 WILD-TYPE
  CLUS_1              1               48
  CLUS_2             12               57
  CLUS_3              5               48
D78V8, multiclass
        clus
vv       GPR158 MUTATED GPR158 WILD-TYPE
  CLUS_1             11               39
  CLUS_2              1               67
  CLUS_3              6               47
D78V9, multiclass
        clus
vv       GPR158 MUTATED GPR158 WILD-TYPE
  CLUS_1              2               57
  CLUS_2             14               66
  CLUS_3              2               27
D78V10, multiclass
        clus
vv       GPR158 MUTATED GPR158 WILD-TYPE
  CLUS_1              0               20
  CLUS_2             16               75
  CLUS_3              2               55
D78V11, multiclass
        clus
vv       GPR158 MUTATED GPR158 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              6               29
  CLUS_3              1               23
D78V12, multiclass
        clus
vv       GPR158 MUTATED GPR158 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              8               38
  CLUS_3              2               46

Clustering(79) Variable = SPTA1 MUTATION ANALYSIS
D79V1, multiclass
        clus
vv       SPTA1 MUTATED SPTA1 WILD-TYPE
  CLUS_1             3               2
  CLUS_2             5               4
  CLUS_3             6               6
  CLUS_4             1               5
D79V2, multiclass
        clus
vv       SPTA1 MUTATED SPTA1 WILD-TYPE
  CLUS_1             2               5
  CLUS_2             6               7
  CLUS_3             7               5
D79V3, multiclass
        clus
vv       SPTA1 MUTATED SPTA1 WILD-TYPE
  CLUS_1            26              44
  CLUS_2            15              53
  CLUS_3            10              24
D79V4, multiclass
        clus
vv       SPTA1 MUTATED SPTA1 WILD-TYPE
  CLUS_1             5              29
  CLUS_2            17              16
  CLUS_3             8              35
D79V5, multiclass
        clus
vv       SPTA1 MUTATED SPTA1 WILD-TYPE
  CLUS_1            22              51
  CLUS_2             6              17
  CLUS_3            11              28
D79V6, multiclass
        clus
vv       SPTA1 MUTATED SPTA1 WILD-TYPE
  CLUS_1            24              53
  CLUS_2             8              18
  CLUS_3             7              25
D79V7, multiclass
        clus
vv       SPTA1 MUTATED SPTA1 WILD-TYPE
  CLUS_1            11              38
  CLUS_2            27              42
  CLUS_3            13              40
D79V8, multiclass
        clus
vv       SPTA1 MUTATED SPTA1 WILD-TYPE
  CLUS_1            20              30
  CLUS_2            16              52
  CLUS_3            15              38
D79V9, multiclass
        clus
vv       SPTA1 MUTATED SPTA1 WILD-TYPE
  CLUS_1            14              45
  CLUS_2            29              51
  CLUS_3             8              21
D79V10, multiclass
        clus
vv       SPTA1 MUTATED SPTA1 WILD-TYPE
  CLUS_1             5              15
  CLUS_2            34              57
  CLUS_3            12              45
D79V11, multiclass
        clus
vv       SPTA1 MUTATED SPTA1 WILD-TYPE
  CLUS_1             9              37
  CLUS_2            11              24
  CLUS_3             7              17
D79V12, multiclass
        clus
vv       SPTA1 MUTATED SPTA1 WILD-TYPE
  CLUS_1             3               8
  CLUS_2            15              31
  CLUS_3             9              39

Clustering(80) Variable = PDGFA MUTATION ANALYSIS
D80V1, multiclass
[1] "Remove cluster labels:" "PDGFA MUTATED"         
clus
  PDGFA MUTATED PDGFA WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2657 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
D80V2, multiclass
[1] "Remove cluster labels:" "PDGFA MUTATED"         
clus
  PDGFA MUTATED PDGFA WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2657 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"PDGFA WILD-TYPE" "PDGFA WILD-TYPE" "PDGFA WILD-TYPE" 
D80V3, multiclass
        clus
vv       PDGFA MUTATED PDGFA WILD-TYPE
  CLUS_1             2              68
  CLUS_2             1              67
  CLUS_3             2              32
D80V4, multiclass
        clus
vv       PDGFA MUTATED PDGFA WILD-TYPE
  CLUS_1             1              33
  CLUS_2             3              30
  CLUS_3             0              43
D80V5, multiclass
        clus
vv       PDGFA MUTATED PDGFA WILD-TYPE
  CLUS_1             4              69
  CLUS_2             0              23
  CLUS_3             0              39
D80V6, multiclass
        clus
vv       PDGFA MUTATED PDGFA WILD-TYPE
  CLUS_1             3              74
  CLUS_2             1              25
  CLUS_3             0              32
D80V7, multiclass
        clus
vv       PDGFA MUTATED PDGFA WILD-TYPE
  CLUS_1             1              48
  CLUS_2             1              68
  CLUS_3             3              50
D80V8, multiclass
        clus
vv       PDGFA MUTATED PDGFA WILD-TYPE
  CLUS_1             1              49
  CLUS_2             2              66
  CLUS_3             2              51
D80V9, multiclass
        clus
vv       PDGFA MUTATED PDGFA WILD-TYPE
  CLUS_1             2              57
  CLUS_2             3              77
  CLUS_3             0              29
D80V10, multiclass
        clus
vv       PDGFA MUTATED PDGFA WILD-TYPE
  CLUS_1             0              20
  CLUS_2             3              88
  CLUS_3             2              55
D80V11, multiclass
        clus
vv       PDGFA MUTATED PDGFA WILD-TYPE
  CLUS_1             3              43
  CLUS_2             0              35
  CLUS_3             0              24
D80V12, multiclass
        clus
vv       PDGFA MUTATED PDGFA WILD-TYPE
  CLUS_1             0              11
  CLUS_2             0              46
  CLUS_3             3              45

Clustering(81) Variable = F8 MUTATION ANALYSIS
D81V1, multiclass
        clus
vv       F8 MUTATED F8 WILD-TYPE
  CLUS_1          0            5
  CLUS_2          1            8
  CLUS_3          1           11
  CLUS_4          1            5
D81V2, multiclass
        clus
vv       F8 MUTATED F8 WILD-TYPE
  CLUS_1          1            6
  CLUS_2          2           11
  CLUS_3          0           12
D81V3, multiclass
        clus
vv       F8 MUTATED F8 WILD-TYPE
  CLUS_1          7           63
  CLUS_2          4           64
  CLUS_3          4           30
D81V4, multiclass
        clus
vv       F8 MUTATED F8 WILD-TYPE
  CLUS_1          4           30
  CLUS_2          4           29
  CLUS_3          3           40
D81V5, multiclass
        clus
vv       F8 MUTATED F8 WILD-TYPE
  CLUS_1          6           67
  CLUS_2          2           21
  CLUS_3          4           35
D81V6, multiclass
        clus
vv       F8 MUTATED F8 WILD-TYPE
  CLUS_1          6           71
  CLUS_2          2           24
  CLUS_3          4           28
D81V7, multiclass
        clus
vv       F8 MUTATED F8 WILD-TYPE
  CLUS_1          3           46
  CLUS_2          6           63
  CLUS_3          6           47
D81V8, multiclass
        clus
vv       F8 MUTATED F8 WILD-TYPE
  CLUS_1          5           45
  CLUS_2          4           64
  CLUS_3          6           47
D81V9, multiclass
        clus
vv       F8 MUTATED F8 WILD-TYPE
  CLUS_1          4           55
  CLUS_2          6           74
  CLUS_3          4           25
D81V10, multiclass
        clus
vv       F8 MUTATED F8 WILD-TYPE
  CLUS_1          2           18
  CLUS_2         10           81
  CLUS_3          2           55
D81V11, multiclass
        clus
vv       F8 MUTATED F8 WILD-TYPE
  CLUS_1          4           42
  CLUS_2          4           31
  CLUS_3          2           22
D81V12, multiclass
        clus
vv       F8 MUTATED F8 WILD-TYPE
  CLUS_1          1           10
  CLUS_2          5           41
  CLUS_3          4           44

Clustering(82) Variable = CTRC MUTATION ANALYSIS
D82V1, multiclass
D82V2, multiclass
D82V3, multiclass
        clus
vv       CTRC MUTATED CTRC WILD-TYPE
  CLUS_1            2             68
  CLUS_2            2             66
  CLUS_3            0             34
D82V4, multiclass
        clus
vv       CTRC MUTATED CTRC WILD-TYPE
  CLUS_1            0             34
  CLUS_2            2             31
  CLUS_3            2             41
D82V5, multiclass
        clus
vv       CTRC MUTATED CTRC WILD-TYPE
  CLUS_1            4             69
  CLUS_2            0             23
  CLUS_3            0             39
D82V6, multiclass
        clus
vv       CTRC MUTATED CTRC WILD-TYPE
  CLUS_1            3             74
  CLUS_2            1             25
  CLUS_3            0             32
D82V7, multiclass
        clus
vv       CTRC MUTATED CTRC WILD-TYPE
  CLUS_1            0             49
  CLUS_2            3             66
  CLUS_3            1             52
D82V8, multiclass
        clus
vv       CTRC MUTATED CTRC WILD-TYPE
  CLUS_1            1             49
  CLUS_2            2             66
  CLUS_3            1             52
D82V9, multiclass
        clus
vv       CTRC MUTATED CTRC WILD-TYPE
  CLUS_1            1             58
  CLUS_2            2             78
  CLUS_3            1             28
D82V10, multiclass
        clus
vv       CTRC MUTATED CTRC WILD-TYPE
  CLUS_1            1             19
  CLUS_2            3             88
  CLUS_3            0             57
D82V11, multiclass
        clus
vv       CTRC MUTATED CTRC WILD-TYPE
  CLUS_1            1             45
  CLUS_2            2             33
  CLUS_3            1             23
D82V12, multiclass
        clus
vv       CTRC MUTATED CTRC WILD-TYPE
  CLUS_1            0             11
  CLUS_2            2             44
  CLUS_3            2             46

Clustering(83) Variable = EPHB6 MUTATION ANALYSIS
D83V1, multiclass
[1] "Remove cluster labels:" "EPHB6 MUTATED"         
clus
  EPHB6 MUTATED EPHB6 WILD-TYPE 
              2              30 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2666      TCGA-44-2668      TCGA-44-3398 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-44-3918      TCGA-44-3919      TCGA-44-4112      TCGA-55-1592 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1595      TCGA-55-1596      TCGA-64-1678 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-64-1680      TCGA-67-3770      TCGA-67-3771      TCGA-67-3772 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-67-3773      TCGA-67-3774 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
D83V2, multiclass
[1] "Remove cluster labels:" "EPHB6 MUTATED"         
clus
  EPHB6 MUTATED EPHB6 WILD-TYPE 
              2              30 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2666      TCGA-44-2668      TCGA-44-3398 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-44-3918      TCGA-44-3919      TCGA-44-4112      TCGA-55-1592 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1595      TCGA-55-1596      TCGA-64-1678 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-64-1680      TCGA-67-3770      TCGA-67-3771      TCGA-67-3772 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
     TCGA-67-3773      TCGA-67-3774 
"EPHB6 WILD-TYPE" "EPHB6 WILD-TYPE" 
D83V3, multiclass
        clus
vv       EPHB6 MUTATED EPHB6 WILD-TYPE
  CLUS_1             7              63
  CLUS_2             7              61
  CLUS_3             5              29
D83V4, multiclass
        clus
vv       EPHB6 MUTATED EPHB6 WILD-TYPE
  CLUS_1             1              33
  CLUS_2             7              26
  CLUS_3             7              36
D83V5, multiclass
        clus
vv       EPHB6 MUTATED EPHB6 WILD-TYPE
  CLUS_1             9              64
  CLUS_2             2              21
  CLUS_3             7              32
D83V6, multiclass
        clus
vv       EPHB6 MUTATED EPHB6 WILD-TYPE
  CLUS_1             8              69
  CLUS_2             4              22
  CLUS_3             6              26
D83V7, multiclass
        clus
vv       EPHB6 MUTATED EPHB6 WILD-TYPE
  CLUS_1             3              46
  CLUS_2            11              58
  CLUS_3             5              48
D83V8, multiclass
        clus
vv       EPHB6 MUTATED EPHB6 WILD-TYPE
  CLUS_1             8              42
  CLUS_2             5              63
  CLUS_3             6              47
D83V9, multiclass
        clus
vv       EPHB6 MUTATED EPHB6 WILD-TYPE
  CLUS_1             8              51
  CLUS_2             7              73
  CLUS_3             4              25
D83V10, multiclass
        clus
vv       EPHB6 MUTATED EPHB6 WILD-TYPE
  CLUS_1             0              20
  CLUS_2            11              80
  CLUS_3             8              49
D83V11, multiclass
        clus
vv       EPHB6 MUTATED EPHB6 WILD-TYPE
  CLUS_1             7              39
  CLUS_2             4              31
  CLUS_3             4              20
D83V12, multiclass
        clus
vv       EPHB6 MUTATED EPHB6 WILD-TYPE
  CLUS_1             1              10
  CLUS_2             5              41
  CLUS_3             9              39

Clustering(84) Variable = C12ORF74 MUTATION ANALYSIS
D84V1, multiclass
[1] "Remove cluster labels:" "C12ORF74 MUTATED"      
clus
  C12ORF74 MUTATED C12ORF74 WILD-TYPE 
                 1                 31 
        TCGA-05-4244         TCGA-05-4249         TCGA-05-4250 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-35-3615         TCGA-35-4122         TCGA-35-4123 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-4112 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-55-1596         TCGA-64-1676         TCGA-64-1677 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1680         TCGA-67-3770 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-67-3774 
"C12ORF74 WILD-TYPE" 
D84V2, multiclass
[1] "Remove cluster labels:" "C12ORF74 MUTATED"      
clus
  C12ORF74 MUTATED C12ORF74 WILD-TYPE 
                 1                 31 
        TCGA-05-4244         TCGA-05-4249         TCGA-05-4250 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-35-3615         TCGA-35-4122         TCGA-35-4123 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-2655         TCGA-44-2656         TCGA-44-2657 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-2659         TCGA-44-2661         TCGA-44-2662 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-2665         TCGA-44-2666         TCGA-44-2668 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-4112 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-55-1592         TCGA-55-1594         TCGA-55-1595 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-55-1596         TCGA-64-1676         TCGA-64-1677 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1680         TCGA-67-3770 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-67-3774 
"C12ORF74 WILD-TYPE" 
D84V3, multiclass
        clus
vv       C12ORF74 MUTATED C12ORF74 WILD-TYPE
  CLUS_1                1                 69
  CLUS_2                2                 66
  CLUS_3                0                 34
D84V4, multiclass
[1] "Remove cluster labels:" "C12ORF74 MUTATED"      
clus
  C12ORF74 MUTATED C12ORF74 WILD-TYPE 
                 2                108 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4410         TCGA-05-4415 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4417         TCGA-05-4424         TCGA-05-4425 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4427         TCGA-05-4433         TCGA-05-5420 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-5423         TCGA-05-5425         TCGA-05-5428 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-5375 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2665         TCGA-44-2666 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3918         TCGA-44-4112 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5645         TCGA-44-6144 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6145         TCGA-44-6146         TCGA-44-6147 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6148         TCGA-44-6774         TCGA-44-6775 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6776         TCGA-44-6777         TCGA-44-6778 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6779         TCGA-49-4487         TCGA-49-4488 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4512         TCGA-49-4514 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-6745         TCGA-49-6767         TCGA-50-5044 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-6597         TCGA-55-5899         TCGA-55-6543 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-5774 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-6215 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4676         TCGA-75-5122 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-75-5125         TCGA-75-5146         TCGA-75-5147 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-75-6203         TCGA-75-6205         TCGA-75-6207 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-75-6211         TCGA-75-6212         TCGA-80-5611 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-86-6562         TCGA-91-6828         TCGA-91-6829 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
D84V5, multiclass
[1] "Remove cluster labels:" "C12ORF74 MUTATED"      
clus
  C12ORF74 MUTATED C12ORF74 WILD-TYPE 
                 1                134 
        TCGA-05-4244         TCGA-05-4249         TCGA-05-4250 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4396         TCGA-05-4397 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4398         TCGA-05-4402         TCGA-05-4405 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4410         TCGA-05-4417         TCGA-05-4418 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4426 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4427         TCGA-05-4430         TCGA-05-4434 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-38-4629         TCGA-38-6178         TCGA-44-2656 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2661         TCGA-44-2665 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-3918         TCGA-44-4112         TCGA-44-5643 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-6767         TCGA-50-5044         TCGA-50-5045 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5066 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5068         TCGA-50-5072         TCGA-50-5930 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5931         TCGA-50-5932         TCGA-50-5933 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-6597         TCGA-55-1592         TCGA-55-1594 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-55-6712         TCGA-64-1676         TCGA-64-1677 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1680         TCGA-64-5774 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3771         TCGA-67-6215 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4670 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-75-5122 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-75-5125         TCGA-75-6203         TCGA-75-6205 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-75-6206         TCGA-75-6207         TCGA-75-6211 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-75-6212         TCGA-80-5611         TCGA-86-6562 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
D84V6, multiclass
[1] "Remove cluster labels:" "C12ORF74 MUTATED"      
clus
  C12ORF74 MUTATED C12ORF74 WILD-TYPE 
                 1                134 
        TCGA-05-4244         TCGA-05-4249         TCGA-05-4250 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4396         TCGA-05-4397 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4398         TCGA-05-4402         TCGA-05-4405 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4410         TCGA-05-4417         TCGA-05-4418 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4426 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4427         TCGA-05-4430         TCGA-05-4434 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-38-4629         TCGA-38-6178         TCGA-44-2656 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2661         TCGA-44-2665 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-3918         TCGA-44-4112         TCGA-44-5643 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-6767         TCGA-50-5044         TCGA-50-5045 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5066 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5068         TCGA-50-5072         TCGA-50-5930 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5931         TCGA-50-5932         TCGA-50-5933 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-6597         TCGA-55-1592         TCGA-55-1594 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-55-1596         TCGA-55-5899         TCGA-55-6543 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-55-6712         TCGA-64-1676         TCGA-64-1677 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-64-1678         TCGA-64-1680         TCGA-64-5774 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-64-5778         TCGA-64-5779         TCGA-64-5781 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-64-5815         TCGA-67-3771         TCGA-67-6215 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4659         TCGA-73-4670 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-73-4675         TCGA-73-4676         TCGA-75-5122 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-75-5125         TCGA-75-6203         TCGA-75-6205 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-75-6206         TCGA-75-6207         TCGA-75-6211 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-75-6212         TCGA-80-5611         TCGA-86-6562 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6831 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
D84V7, multiclass
        clus
vv       C12ORF74 MUTATED C12ORF74 WILD-TYPE
  CLUS_1                3                 46
  CLUS_2                0                 69
  CLUS_3                0                 53
D84V8, multiclass
        clus
vv       C12ORF74 MUTATED C12ORF74 WILD-TYPE
  CLUS_1                0                 50
  CLUS_2                3                 65
  CLUS_3                0                 53
D84V9, multiclass
        clus
vv       C12ORF74 MUTATED C12ORF74 WILD-TYPE
  CLUS_1                3                 56
  CLUS_2                0                 80
  CLUS_3                0                 29
D84V10, multiclass
        clus
vv       C12ORF74 MUTATED C12ORF74 WILD-TYPE
  CLUS_1                0                 20
  CLUS_2                0                 91
  CLUS_3                3                 54
D84V11, multiclass
[1] "Remove cluster labels:" "C12ORF74 MUTATED"      
clus
  C12ORF74 MUTATED C12ORF74 WILD-TYPE 
                 2                103 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4410         TCGA-05-4415 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4417         TCGA-05-4424         TCGA-05-4425 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4427         TCGA-05-4433         TCGA-05-5420 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-5423         TCGA-05-5425         TCGA-05-5428 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-5375 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5645         TCGA-44-6144 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6145         TCGA-44-6146         TCGA-44-6147 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6148         TCGA-44-6774         TCGA-44-6775 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6776         TCGA-44-6777         TCGA-44-6778 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6779         TCGA-49-4487         TCGA-49-4488 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4512         TCGA-49-4514 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-6745         TCGA-49-6767         TCGA-50-5044 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-6597         TCGA-55-5899         TCGA-55-6543 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-5774 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-6215 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4676         TCGA-75-5122 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-75-5125         TCGA-75-5146         TCGA-75-5147 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-75-6203         TCGA-75-6205         TCGA-75-6206 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-75-6207         TCGA-75-6211         TCGA-75-6212 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-80-5611         TCGA-86-6562         TCGA-91-6828 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6831         TCGA-91-6835 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-91-6836 
"C12ORF74 WILD-TYPE" 
D84V12, multiclass
[1] "Remove cluster labels:" "C12ORF74 MUTATED"      
clus
  C12ORF74 MUTATED C12ORF74 WILD-TYPE 
                 2                103 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4410         TCGA-05-4415 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4417         TCGA-05-4424         TCGA-05-4425 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-4427         TCGA-05-4433         TCGA-05-5420 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-5423         TCGA-05-5425         TCGA-05-5428 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-5375 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5645         TCGA-44-6144 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6145         TCGA-44-6146         TCGA-44-6147 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6148         TCGA-44-6774         TCGA-44-6775 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6776         TCGA-44-6777         TCGA-44-6778 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-44-6779         TCGA-49-4487         TCGA-49-4488 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4512         TCGA-49-4514 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-49-6745         TCGA-49-6767         TCGA-50-5044 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-50-6597         TCGA-55-5899         TCGA-55-6543 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-55-6642         TCGA-55-6712         TCGA-64-5774 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-6215 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-71-6725 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-73-4658         TCGA-73-4676         TCGA-75-5122 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-75-5125         TCGA-75-5146         TCGA-75-5147 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-75-6203         TCGA-75-6205         TCGA-75-6206 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-75-6207         TCGA-75-6211         TCGA-75-6212 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-80-5611         TCGA-86-6562         TCGA-91-6828 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6831         TCGA-91-6835 
"C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" "C12ORF74 WILD-TYPE" 
        TCGA-91-6836 
"C12ORF74 WILD-TYPE" 

Clustering(85) Variable = DENND2A MUTATION ANALYSIS
D85V1, multiclass
[1] "Remove cluster labels:" "DENND2A MUTATED"       
clus
  DENND2A MUTATED DENND2A WILD-TYPE 
                1                31 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2656 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3398 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-55-1594 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-64-1676        TCGA-64-1677 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1680        TCGA-67-3770        TCGA-67-3771 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
D85V2, multiclass
[1] "Remove cluster labels:" "DENND2A MUTATED"       
clus
  DENND2A MUTATED DENND2A WILD-TYPE 
                1                31 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2656 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3398 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-55-1594 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-64-1676        TCGA-64-1677 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1680        TCGA-67-3770        TCGA-67-3771 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"DENND2A WILD-TYPE" "DENND2A WILD-TYPE" "DENND2A WILD-TYPE" 
D85V3, multiclass
        clus
vv       DENND2A MUTATED DENND2A WILD-TYPE
  CLUS_1               4                66
  CLUS_2               3                65
  CLUS_3               2                32
D85V4, multiclass
        clus
vv       DENND2A MUTATED DENND2A WILD-TYPE
  CLUS_1               1                33
  CLUS_2               5                28
  CLUS_3               0                43
D85V5, multiclass
        clus
vv       DENND2A MUTATED DENND2A WILD-TYPE
  CLUS_1               6                67
  CLUS_2               0                23
  CLUS_3               2                37
D85V6, multiclass
        clus
vv       DENND2A MUTATED DENND2A WILD-TYPE
  CLUS_1               5                72
  CLUS_2               1                25
  CLUS_3               2                30
D85V7, multiclass
        clus
vv       DENND2A MUTATED DENND2A WILD-TYPE
  CLUS_1               0                49
  CLUS_2               3                66
  CLUS_3               6                47
D85V8, multiclass
        clus
vv       DENND2A MUTATED DENND2A WILD-TYPE
  CLUS_1               3                47
  CLUS_2               1                67
  CLUS_3               5                48
D85V9, multiclass
        clus
vv       DENND2A MUTATED DENND2A WILD-TYPE
  CLUS_1               1                58
  CLUS_2               8                72
  CLUS_3               0                29
D85V10, multiclass
        clus
vv       DENND2A MUTATED DENND2A WILD-TYPE
  CLUS_1               0                20
  CLUS_2               8                83
  CLUS_3               1                56
D85V11, multiclass
        clus
vv       DENND2A MUTATED DENND2A WILD-TYPE
  CLUS_1               3                43
  CLUS_2               3                32
  CLUS_3               0                24
D85V12, multiclass
        clus
vv       DENND2A MUTATED DENND2A WILD-TYPE
  CLUS_1               0                11
  CLUS_2               4                42
  CLUS_3               2                46

Clustering(86) Variable = POF1B MUTATION ANALYSIS
D86V1, multiclass
[1] "Remove cluster labels:" "POF1B MUTATED"         
clus
  POF1B MUTATED POF1B WILD-TYPE 
              2              30 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2656      TCGA-44-2657 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" 
D86V2, multiclass
[1] "Remove cluster labels:" "POF1B MUTATED"         
clus
  POF1B MUTATED POF1B WILD-TYPE 
              2              30 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2656      TCGA-44-2657 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" "POF1B WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773 
"POF1B WILD-TYPE" "POF1B WILD-TYPE" 
D86V3, multiclass
        clus
vv       POF1B MUTATED POF1B WILD-TYPE
  CLUS_1             3              67
  CLUS_2             5              63
  CLUS_3             1              33
D86V4, multiclass
        clus
vv       POF1B MUTATED POF1B WILD-TYPE
  CLUS_1             0              34
  CLUS_2             3              30
  CLUS_3             2              41
D86V5, multiclass
        clus
vv       POF1B MUTATED POF1B WILD-TYPE
  CLUS_1             5              68
  CLUS_2             2              21
  CLUS_3             0              39
D86V6, multiclass
        clus
vv       POF1B MUTATED POF1B WILD-TYPE
  CLUS_1             5              72
  CLUS_2             1              25
  CLUS_3             1              31
D86V7, multiclass
        clus
vv       POF1B MUTATED POF1B WILD-TYPE
  CLUS_1             4              45
  CLUS_2             4              65
  CLUS_3             1              52
D86V8, multiclass
        clus
vv       POF1B MUTATED POF1B WILD-TYPE
  CLUS_1             4              46
  CLUS_2             4              64
  CLUS_3             1              52
D86V9, multiclass
        clus
vv       POF1B MUTATED POF1B WILD-TYPE
  CLUS_1             4              55
  CLUS_2             3              77
  CLUS_3             1              28
D86V10, multiclass
        clus
vv       POF1B MUTATED POF1B WILD-TYPE
  CLUS_1             3              17
  CLUS_2             3              88
  CLUS_3             2              55
D86V11, multiclass
        clus
vv       POF1B MUTATED POF1B WILD-TYPE
  CLUS_1             1              45
  CLUS_2             3              32
  CLUS_3             1              23
D86V12, multiclass
        clus
vv       POF1B MUTATED POF1B WILD-TYPE
  CLUS_1             0              11
  CLUS_2             3              43
  CLUS_3             2              46

Clustering(87) Variable = TMTC1 MUTATION ANALYSIS
D87V1, multiclass
        clus
vv       TMTC1 MUTATED TMTC1 WILD-TYPE
  CLUS_1             0               5
  CLUS_2             2               7
  CLUS_3             0              12
  CLUS_4             1               5
D87V2, multiclass
        clus
vv       TMTC1 MUTATED TMTC1 WILD-TYPE
  CLUS_1             1               6
  CLUS_2             0              13
  CLUS_3             2              10
D87V3, multiclass
        clus
vv       TMTC1 MUTATED TMTC1 WILD-TYPE
  CLUS_1             9              61
  CLUS_2             5              63
  CLUS_3             8              26
D87V4, multiclass
        clus
vv       TMTC1 MUTATED TMTC1 WILD-TYPE
  CLUS_1             4              30
  CLUS_2             5              28
  CLUS_3             5              38
D87V5, multiclass
        clus
vv       TMTC1 MUTATED TMTC1 WILD-TYPE
  CLUS_1            11              62
  CLUS_2             1              22
  CLUS_3             5              34
D87V6, multiclass
        clus
vv       TMTC1 MUTATED TMTC1 WILD-TYPE
  CLUS_1            12              65
  CLUS_2             1              25
  CLUS_3             4              28
D87V7, multiclass
        clus
vv       TMTC1 MUTATED TMTC1 WILD-TYPE
  CLUS_1             3              46
  CLUS_2            12              57
  CLUS_3             7              46
D87V8, multiclass
        clus
vv       TMTC1 MUTATED TMTC1 WILD-TYPE
  CLUS_1             8              42
  CLUS_2             6              62
  CLUS_3             8              45
D87V9, multiclass
        clus
vv       TMTC1 MUTATED TMTC1 WILD-TYPE
  CLUS_1             6              53
  CLUS_2            12              68
  CLUS_3             2              27
D87V10, multiclass
        clus
vv       TMTC1 MUTATED TMTC1 WILD-TYPE
  CLUS_1             1              19
  CLUS_2            13              78
  CLUS_3             6              51
D87V11, multiclass
        clus
vv       TMTC1 MUTATED TMTC1 WILD-TYPE
  CLUS_1             5              41
  CLUS_2             6              29
  CLUS_3             2              22
D87V12, multiclass
        clus
vv       TMTC1 MUTATED TMTC1 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             7              39
  CLUS_3             6              42

Clustering(88) Variable = OR2F2 MUTATION ANALYSIS
D88V1, multiclass
[1] "Remove cluster labels:" "OR2F2 MUTATED"         
clus
  OR2F2 MUTATED OR2F2 WILD-TYPE 
              2              30 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2657 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3919 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-44-4112      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-55-1596      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-64-1680      TCGA-67-3770      TCGA-67-3771      TCGA-67-3772 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-67-3773      TCGA-67-3774 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
D88V2, multiclass
[1] "Remove cluster labels:" "OR2F2 MUTATED"         
clus
  OR2F2 MUTATED OR2F2 WILD-TYPE 
              2              30 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2657 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3919 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-44-4112      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-55-1596      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-64-1680      TCGA-67-3770      TCGA-67-3771      TCGA-67-3772 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
     TCGA-67-3773      TCGA-67-3774 
"OR2F2 WILD-TYPE" "OR2F2 WILD-TYPE" 
D88V3, multiclass
        clus
vv       OR2F2 MUTATED OR2F2 WILD-TYPE
  CLUS_1             2              68
  CLUS_2             2              66
  CLUS_3             2              32
D88V4, multiclass
        clus
vv       OR2F2 MUTATED OR2F2 WILD-TYPE
  CLUS_1             1              33
  CLUS_2             3              30
  CLUS_3             2              41
D88V5, multiclass
        clus
vv       OR2F2 MUTATED OR2F2 WILD-TYPE
  CLUS_1             4              69
  CLUS_2             1              22
  CLUS_3             1              38
D88V6, multiclass
        clus
vv       OR2F2 MUTATED OR2F2 WILD-TYPE
  CLUS_1             4              73
  CLUS_2             1              25
  CLUS_3             1              31
D88V7, multiclass
        clus
vv       OR2F2 MUTATED OR2F2 WILD-TYPE
  CLUS_1             0              49
  CLUS_2             5              64
  CLUS_3             1              52
D88V8, multiclass
        clus
vv       OR2F2 MUTATED OR2F2 WILD-TYPE
  CLUS_1             3              47
  CLUS_2             2              66
  CLUS_3             1              52
D88V9, multiclass
        clus
vv       OR2F2 MUTATED OR2F2 WILD-TYPE
  CLUS_1             1              58
  CLUS_2             5              75
  CLUS_3             0              29
D88V10, multiclass
        clus
vv       OR2F2 MUTATED OR2F2 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             5              86
  CLUS_3             1              56
D88V11, multiclass
        clus
vv       OR2F2 MUTATED OR2F2 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             2              33
  CLUS_3             0              24
D88V12, multiclass
        clus
vv       OR2F2 MUTATED OR2F2 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             3              43
  CLUS_3             1              47

Clustering(89) Variable = SPATA18 MUTATION ANALYSIS
D89V1, multiclass
[1] "Remove cluster labels:" "SPATA18 MUTATED"       
clus
  SPATA18 MUTATED SPATA18 WILD-TYPE 
                2                30 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2656 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3398        TCGA-44-3918 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-55-1594        TCGA-55-1595 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-55-1596        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-64-1680        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
D89V2, multiclass
[1] "Remove cluster labels:" "SPATA18 MUTATED"       
clus
  SPATA18 MUTATED SPATA18 WILD-TYPE 
                2                30 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2656 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3398        TCGA-44-3918 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-55-1594        TCGA-55-1595 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-55-1596        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-64-1680        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774 
"SPATA18 WILD-TYPE" "SPATA18 WILD-TYPE" 
D89V3, multiclass
        clus
vv       SPATA18 MUTATED SPATA18 WILD-TYPE
  CLUS_1               4                66
  CLUS_2               3                65
  CLUS_3               1                33
D89V4, multiclass
        clus
vv       SPATA18 MUTATED SPATA18 WILD-TYPE
  CLUS_1               2                32
  CLUS_2               1                32
  CLUS_3               2                41
D89V5, multiclass
        clus
vv       SPATA18 MUTATED SPATA18 WILD-TYPE
  CLUS_1               3                70
  CLUS_2               3                20
  CLUS_3               1                38
D89V6, multiclass
        clus
vv       SPATA18 MUTATED SPATA18 WILD-TYPE
  CLUS_1               4                73
  CLUS_2               3                23
  CLUS_3               0                32
D89V7, multiclass
        clus
vv       SPATA18 MUTATED SPATA18 WILD-TYPE
  CLUS_1               0                49
  CLUS_2               5                64
  CLUS_3               3                50
D89V8, multiclass
        clus
vv       SPATA18 MUTATED SPATA18 WILD-TYPE
  CLUS_1               3                47
  CLUS_2               3                65
  CLUS_3               2                51
D89V9, multiclass
        clus
vv       SPATA18 MUTATED SPATA18 WILD-TYPE
  CLUS_1               3                56
  CLUS_2               4                76
  CLUS_3               1                28
D89V10, multiclass
        clus
vv       SPATA18 MUTATED SPATA18 WILD-TYPE
  CLUS_1               0                20
  CLUS_2               5                86
  CLUS_3               3                54
D89V11, multiclass
        clus
vv       SPATA18 MUTATED SPATA18 WILD-TYPE
  CLUS_1               4                42
  CLUS_2               0                35
  CLUS_3               1                23
D89V12, multiclass
        clus
vv       SPATA18 MUTATED SPATA18 WILD-TYPE
  CLUS_1               0                11
  CLUS_2               2                44
  CLUS_3               3                45

Clustering(90) Variable = FSCB MUTATION ANALYSIS
D90V1, multiclass
[1] "Remove cluster labels:" "FSCB MUTATED"          
clus
  FSCB MUTATED FSCB WILD-TYPE 
             2             30 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2656 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2659     TCGA-44-2661     TCGA-44-2662 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-44-2665     TCGA-44-2666     TCGA-44-2668     TCGA-44-3398 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-44-3918     TCGA-44-3919     TCGA-55-1592     TCGA-55-1594 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-55-1595     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-64-1680     TCGA-67-3770     TCGA-67-3771     TCGA-67-3772 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-67-3773     TCGA-67-3774 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" 
D90V2, multiclass
[1] "Remove cluster labels:" "FSCB MUTATED"          
clus
  FSCB MUTATED FSCB WILD-TYPE 
             2             30 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2656 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2659     TCGA-44-2661     TCGA-44-2662 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-44-2665     TCGA-44-2666     TCGA-44-2668     TCGA-44-3398 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-44-3918     TCGA-44-3919     TCGA-55-1592     TCGA-55-1594 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-55-1595     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-64-1680     TCGA-67-3770     TCGA-67-3771     TCGA-67-3772 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" "FSCB WILD-TYPE" 
    TCGA-67-3773     TCGA-67-3774 
"FSCB WILD-TYPE" "FSCB WILD-TYPE" 
D90V3, multiclass
        clus
vv       FSCB MUTATED FSCB WILD-TYPE
  CLUS_1            7             63
  CLUS_2            4             64
  CLUS_3            4             30
D90V4, multiclass
        clus
vv       FSCB MUTATED FSCB WILD-TYPE
  CLUS_1            3             31
  CLUS_2            1             32
  CLUS_3            6             37
D90V5, multiclass
        clus
vv       FSCB MUTATED FSCB WILD-TYPE
  CLUS_1            8             65
  CLUS_2            0             23
  CLUS_3            5             34
D90V6, multiclass
        clus
vv       FSCB MUTATED FSCB WILD-TYPE
  CLUS_1           10             67
  CLUS_2            0             26
  CLUS_3            3             29
D90V7, multiclass
        clus
vv       FSCB MUTATED FSCB WILD-TYPE
  CLUS_1            1             48
  CLUS_2            8             61
  CLUS_3            6             47
D90V8, multiclass
        clus
vv       FSCB MUTATED FSCB WILD-TYPE
  CLUS_1            2             48
  CLUS_2            3             65
  CLUS_3           10             43
D90V9, multiclass
        clus
vv       FSCB MUTATED FSCB WILD-TYPE
  CLUS_1            2             57
  CLUS_2            7             73
  CLUS_3            6             23
D90V10, multiclass
        clus
vv       FSCB MUTATED FSCB WILD-TYPE
  CLUS_1            2             18
  CLUS_2           11             80
  CLUS_3            2             55
D90V11, multiclass
        clus
vv       FSCB MUTATED FSCB WILD-TYPE
  CLUS_1            1             45
  CLUS_2            3             32
  CLUS_3            5             19
D90V12, multiclass
        clus
vv       FSCB MUTATED FSCB WILD-TYPE
  CLUS_1            1             10
  CLUS_2            6             40
  CLUS_3            2             46

Clustering(91) Variable = TBX21 MUTATION ANALYSIS
D91V1, multiclass
        clus
vv       TBX21 MUTATED TBX21 WILD-TYPE
  CLUS_1             0               5
  CLUS_2             1               8
  CLUS_3             1              11
  CLUS_4             1               5
D91V2, multiclass
        clus
vv       TBX21 MUTATED TBX21 WILD-TYPE
  CLUS_1             1               6
  CLUS_2             1              12
  CLUS_3             1              11
D91V3, multiclass
        clus
vv       TBX21 MUTATED TBX21 WILD-TYPE
  CLUS_1             3              67
  CLUS_2             2              66
  CLUS_3             2              32
D91V4, multiclass
        clus
vv       TBX21 MUTATED TBX21 WILD-TYPE
  CLUS_1             0              34
  CLUS_2             3              30
  CLUS_3             1              42
D91V5, multiclass
        clus
vv       TBX21 MUTATED TBX21 WILD-TYPE
  CLUS_1             2              71
  CLUS_2             0              23
  CLUS_3             4              35
D91V6, multiclass
        clus
vv       TBX21 MUTATED TBX21 WILD-TYPE
  CLUS_1             5              72
  CLUS_2             0              26
  CLUS_3             1              31
D91V7, multiclass
        clus
vv       TBX21 MUTATED TBX21 WILD-TYPE
  CLUS_1             0              49
  CLUS_2             5              64
  CLUS_3             2              51
D91V8, multiclass
        clus
vv       TBX21 MUTATED TBX21 WILD-TYPE
  CLUS_1             5              45
  CLUS_2             0              68
  CLUS_3             2              51
D91V9, multiclass
        clus
vv       TBX21 MUTATED TBX21 WILD-TYPE
  CLUS_1             2              57
  CLUS_2             5              75
  CLUS_3             0              29
D91V10, multiclass
        clus
vv       TBX21 MUTATED TBX21 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             5              86
  CLUS_3             2              55
D91V11, multiclass
        clus
vv       TBX21 MUTATED TBX21 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             2              33
  CLUS_3             0              24
D91V12, multiclass
        clus
vv       TBX21 MUTATED TBX21 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             3              43
  CLUS_3             0              48

Clustering(92) Variable = CDH6 MUTATION ANALYSIS
D92V1, multiclass
        clus
vv       CDH6 MUTATED CDH6 WILD-TYPE
  CLUS_1            0              5
  CLUS_2            3              6
  CLUS_3            1             11
  CLUS_4            0              6
D92V2, multiclass
        clus
vv       CDH6 MUTATED CDH6 WILD-TYPE
  CLUS_1            0              7
  CLUS_2            2             11
  CLUS_3            2             10
D92V3, multiclass
        clus
vv       CDH6 MUTATED CDH6 WILD-TYPE
  CLUS_1            7             63
  CLUS_2            5             63
  CLUS_3            5             29
D92V4, multiclass
        clus
vv       CDH6 MUTATED CDH6 WILD-TYPE
  CLUS_1            5             29
  CLUS_2            5             28
  CLUS_3            5             38
D92V5, multiclass
        clus
vv       CDH6 MUTATED CDH6 WILD-TYPE
  CLUS_1            8             65
  CLUS_2            1             22
  CLUS_3            6             33
D92V6, multiclass
        clus
vv       CDH6 MUTATED CDH6 WILD-TYPE
  CLUS_1            9             68
  CLUS_2            1             25
  CLUS_3            5             27
D92V7, multiclass
        clus
vv       CDH6 MUTATED CDH6 WILD-TYPE
  CLUS_1            3             46
  CLUS_2            9             60
  CLUS_3            5             48
D92V8, multiclass
        clus
vv       CDH6 MUTATED CDH6 WILD-TYPE
  CLUS_1            7             43
  CLUS_2            3             65
  CLUS_3            7             46
D92V9, multiclass
        clus
vv       CDH6 MUTATED CDH6 WILD-TYPE
  CLUS_1            3             56
  CLUS_2            9             71
  CLUS_3            5             24
D92V10, multiclass
        clus
vv       CDH6 MUTATED CDH6 WILD-TYPE
  CLUS_1            1             19
  CLUS_2           12             79
  CLUS_3            4             53
D92V11, multiclass
        clus
vv       CDH6 MUTATED CDH6 WILD-TYPE
  CLUS_1            6             40
  CLUS_2            3             32
  CLUS_3            2             22
D92V12, multiclass
        clus
vv       CDH6 MUTATED CDH6 WILD-TYPE
  CLUS_1            0             11
  CLUS_2            6             40
  CLUS_3            5             43

Clustering(93) Variable = TTC18 MUTATION ANALYSIS
D93V1, multiclass
[1] "Remove cluster labels:" "TTC18 MUTATED"         
clus
  TTC18 MUTATED TTC18 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2666      TCGA-44-2668      TCGA-44-3398 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-3918      TCGA-44-3919      TCGA-44-4112      TCGA-55-1592 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1595      TCGA-55-1596      TCGA-64-1676 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-64-1677      TCGA-64-1678      TCGA-64-1680      TCGA-67-3770 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
D93V2, multiclass
[1] "Remove cluster labels:" "TTC18 MUTATED"         
clus
  TTC18 MUTATED TTC18 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2666      TCGA-44-2668      TCGA-44-3398 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-3918      TCGA-44-3919      TCGA-44-4112      TCGA-55-1592 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1595      TCGA-55-1596      TCGA-64-1676 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-64-1677      TCGA-64-1678      TCGA-64-1680      TCGA-67-3770 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
D93V3, multiclass
        clus
vv       TTC18 MUTATED TTC18 WILD-TYPE
  CLUS_1             2              68
  CLUS_2             1              67
  CLUS_3             2              32
D93V4, multiclass
[1] "Remove cluster labels:" "TTC18 MUTATED"         
clus
  TTC18 MUTATED TTC18 WILD-TYPE 
              2             108 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4396      TCGA-05-4405 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-4410      TCGA-05-4415      TCGA-05-4417      TCGA-05-4424 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-4425      TCGA-05-4427      TCGA-05-4433      TCGA-05-5420 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-5423      TCGA-05-5425      TCGA-05-5428      TCGA-05-5429 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-5715      TCGA-35-5375      TCGA-38-4631      TCGA-38-4632 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-38-6178      TCGA-44-2656      TCGA-44-2665      TCGA-44-2666 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-2668      TCGA-44-3918      TCGA-44-4112      TCGA-44-5643 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-5645      TCGA-44-6144      TCGA-44-6145      TCGA-44-6146 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-6147      TCGA-44-6148      TCGA-44-6774      TCGA-44-6775 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-6776      TCGA-44-6777      TCGA-44-6778      TCGA-44-6779 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-49-4487      TCGA-49-4488      TCGA-49-4490      TCGA-49-4512 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-49-4514      TCGA-49-6742      TCGA-49-6744      TCGA-49-6745 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-49-6767      TCGA-50-5044      TCGA-50-5045      TCGA-50-5049 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-5051      TCGA-50-5055      TCGA-50-5066      TCGA-50-5068 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-5072      TCGA-50-5930      TCGA-50-5931      TCGA-50-5932 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-5933      TCGA-50-5935      TCGA-50-5936      TCGA-50-5939 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-5941      TCGA-50-5942      TCGA-50-5944      TCGA-50-5946 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-6590      TCGA-50-6591      TCGA-50-6592      TCGA-50-6593 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-6594      TCGA-50-6595      TCGA-50-6597      TCGA-55-5899 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-55-6543      TCGA-55-6642      TCGA-55-6712      TCGA-64-5774 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-64-5775      TCGA-64-5778      TCGA-64-5779      TCGA-64-5781 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-64-5815      TCGA-67-4679      TCGA-67-6215      TCGA-67-6216 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-67-6217      TCGA-71-6725      TCGA-73-4658      TCGA-73-4676 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-75-5122      TCGA-75-5125      TCGA-75-5126      TCGA-75-5146 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-75-5147      TCGA-75-6203      TCGA-75-6205      TCGA-75-6207 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-75-6212      TCGA-80-5611      TCGA-86-6562      TCGA-91-6828 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-91-6829      TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
D93V5, multiclass
        clus
vv       TTC18 MUTATED TTC18 WILD-TYPE
  CLUS_1             2              71
  CLUS_2             0              23
  CLUS_3             2              37
D93V6, multiclass
        clus
vv       TTC18 MUTATED TTC18 WILD-TYPE
  CLUS_1             2              75
  CLUS_2             0              26
  CLUS_3             2              30
D93V7, multiclass
        clus
vv       TTC18 MUTATED TTC18 WILD-TYPE
  CLUS_1             0              49
  CLUS_2             2              67
  CLUS_3             3              50
D93V8, multiclass
        clus
vv       TTC18 MUTATED TTC18 WILD-TYPE
  CLUS_1             1              49
  CLUS_2             0              68
  CLUS_3             4              49
D93V9, multiclass
        clus
vv       TTC18 MUTATED TTC18 WILD-TYPE
  CLUS_1             0              59
  CLUS_2             4              76
  CLUS_3             0              29
D93V10, multiclass
        clus
vv       TTC18 MUTATED TTC18 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             4              87
  CLUS_3             0              57
D93V11, multiclass
[1] "Remove cluster labels:" "TTC18 MUTATED"         
clus
  TTC18 MUTATED TTC18 WILD-TYPE 
              2             103 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4396      TCGA-05-4405 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-4410      TCGA-05-4415      TCGA-05-4417      TCGA-05-4424 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-4425      TCGA-05-4427      TCGA-05-4433      TCGA-05-5420 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-5423      TCGA-05-5425      TCGA-05-5428      TCGA-05-5429 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-5715      TCGA-35-5375      TCGA-38-4631      TCGA-38-4632 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-38-6178      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4487      TCGA-49-4488 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-49-4490      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-49-6767      TCGA-50-5044 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-4679 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4676      TCGA-75-5122      TCGA-75-5125 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-75-5126      TCGA-75-5146      TCGA-75-5147      TCGA-75-6203 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-75-6205      TCGA-75-6206      TCGA-75-6207      TCGA-75-6212 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-80-5611      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
D93V12, multiclass
[1] "Remove cluster labels:" "TTC18 MUTATED"         
clus
  TTC18 MUTATED TTC18 WILD-TYPE 
              2             103 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4396      TCGA-05-4405 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-4410      TCGA-05-4415      TCGA-05-4417      TCGA-05-4424 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-4425      TCGA-05-4427      TCGA-05-4433      TCGA-05-5420 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-5423      TCGA-05-5425      TCGA-05-5428      TCGA-05-5429 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-05-5715      TCGA-35-5375      TCGA-38-4631      TCGA-38-4632 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-38-6178      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4487      TCGA-49-4488 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-49-4490      TCGA-49-4512      TCGA-49-4514      TCGA-49-6742 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-49-6767      TCGA-50-5044 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-4679 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4676      TCGA-75-5122      TCGA-75-5125 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-75-5126      TCGA-75-5146      TCGA-75-5147      TCGA-75-6203 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-75-6205      TCGA-75-6206      TCGA-75-6207      TCGA-75-6212 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-80-5611      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"TTC18 WILD-TYPE" "TTC18 WILD-TYPE" "TTC18 WILD-TYPE" 

Clustering(94) Variable = NALCN MUTATION ANALYSIS
D94V1, multiclass
        clus
vv       NALCN MUTATED NALCN WILD-TYPE
  CLUS_1             1               4
  CLUS_2             1               8
  CLUS_3             3               9
  CLUS_4             0               6
D94V2, multiclass
        clus
vv       NALCN MUTATED NALCN WILD-TYPE
  CLUS_1             0               7
  CLUS_2             3              10
  CLUS_3             2              10
D94V3, multiclass
        clus
vv       NALCN MUTATED NALCN WILD-TYPE
  CLUS_1             7              63
  CLUS_2            12              56
  CLUS_3             5              29
D94V4, multiclass
        clus
vv       NALCN MUTATED NALCN WILD-TYPE
  CLUS_1             4              30
  CLUS_2             6              27
  CLUS_3             6              37
D94V5, multiclass
        clus
vv       NALCN MUTATED NALCN WILD-TYPE
  CLUS_1            11              62
  CLUS_2             2              21
  CLUS_3             4              35
D94V6, multiclass
        clus
vv       NALCN MUTATED NALCN WILD-TYPE
  CLUS_1            11              66
  CLUS_2             3              23
  CLUS_3             3              29
D94V7, multiclass
        clus
vv       NALCN MUTATED NALCN WILD-TYPE
  CLUS_1             6              43
  CLUS_2             8              61
  CLUS_3            10              43
D94V8, multiclass
        clus
vv       NALCN MUTATED NALCN WILD-TYPE
  CLUS_1             7              43
  CLUS_2             7              61
  CLUS_3            10              43
D94V9, multiclass
        clus
vv       NALCN MUTATED NALCN WILD-TYPE
  CLUS_1             9              50
  CLUS_2            11              69
  CLUS_3             3              26
D94V10, multiclass
        clus
vv       NALCN MUTATED NALCN WILD-TYPE
  CLUS_1             3              17
  CLUS_2            13              78
  CLUS_3             7              50
D94V11, multiclass
        clus
vv       NALCN MUTATED NALCN WILD-TYPE
  CLUS_1             8              38
  CLUS_2             4              31
  CLUS_3             3              21
D94V12, multiclass
        clus
vv       NALCN MUTATED NALCN WILD-TYPE
  CLUS_1             1              10
  CLUS_2             8              38
  CLUS_3             6              42

Clustering(95) Variable = ABCB5 MUTATION ANALYSIS
D95V1, multiclass
        clus
vv       ABCB5 MUTATED ABCB5 WILD-TYPE
  CLUS_1             0               5
  CLUS_2             1               8
  CLUS_3             0              12
  CLUS_4             2               4
D95V2, multiclass
        clus
vv       ABCB5 MUTATED ABCB5 WILD-TYPE
  CLUS_1             2               5
  CLUS_2             0              13
  CLUS_3             1              11
D95V3, multiclass
        clus
vv       ABCB5 MUTATED ABCB5 WILD-TYPE
  CLUS_1            10              60
  CLUS_2             7              61
  CLUS_3             2              32
D95V4, multiclass
        clus
vv       ABCB5 MUTATED ABCB5 WILD-TYPE
  CLUS_1             3              31
  CLUS_2             5              28
  CLUS_3             3              40
D95V5, multiclass
        clus
vv       ABCB5 MUTATED ABCB5 WILD-TYPE
  CLUS_1            10              63
  CLUS_2             2              21
  CLUS_3             4              35
D95V6, multiclass
        clus
vv       ABCB5 MUTATED ABCB5 WILD-TYPE
  CLUS_1             8              69
  CLUS_2             3              23
  CLUS_3             5              27
D95V7, multiclass
        clus
vv       ABCB5 MUTATED ABCB5 WILD-TYPE
  CLUS_1             1              48
  CLUS_2            12              57
  CLUS_3             6              47
D95V8, multiclass
        clus
vv       ABCB5 MUTATED ABCB5 WILD-TYPE
  CLUS_1             7              43
  CLUS_2             4              64
  CLUS_3             8              45
D95V9, multiclass
        clus
vv       ABCB5 MUTATED ABCB5 WILD-TYPE
  CLUS_1             4              55
  CLUS_2            10              70
  CLUS_3             4              25
D95V10, multiclass
        clus
vv       ABCB5 MUTATED ABCB5 WILD-TYPE
  CLUS_1             1              19
  CLUS_2            13              78
  CLUS_3             4              53
D95V11, multiclass
        clus
vv       ABCB5 MUTATED ABCB5 WILD-TYPE
  CLUS_1             4              42
  CLUS_2             5              30
  CLUS_3             2              22
D95V12, multiclass
        clus
vv       ABCB5 MUTATED ABCB5 WILD-TYPE
  CLUS_1             1              10
  CLUS_2             7              39
  CLUS_3             3              45

Clustering(96) Variable = OR5I1 MUTATION ANALYSIS
D96V1, multiclass
D96V2, multiclass
D96V3, multiclass
        clus
vv       OR5I1 MUTATED OR5I1 WILD-TYPE
  CLUS_1             3              67
  CLUS_2             6              62
  CLUS_3             2              32
D96V4, multiclass
        clus
vv       OR5I1 MUTATED OR5I1 WILD-TYPE
  CLUS_1             4              30
  CLUS_2             3              30
  CLUS_3             3              40
D96V5, multiclass
        clus
vv       OR5I1 MUTATED OR5I1 WILD-TYPE
  CLUS_1             4              69
  CLUS_2             2              21
  CLUS_3             2              37
D96V6, multiclass
        clus
vv       OR5I1 MUTATED OR5I1 WILD-TYPE
  CLUS_1             3              74
  CLUS_2             3              23
  CLUS_3             2              30
D96V7, multiclass
        clus
vv       OR5I1 MUTATED OR5I1 WILD-TYPE
  CLUS_1             2              47
  CLUS_2             4              65
  CLUS_3             4              49
D96V8, multiclass
        clus
vv       OR5I1 MUTATED OR5I1 WILD-TYPE
  CLUS_1             3              47
  CLUS_2             3              65
  CLUS_3             4              49
D96V9, multiclass
        clus
vv       OR5I1 MUTATED OR5I1 WILD-TYPE
  CLUS_1             2              57
  CLUS_2             4              76
  CLUS_3             5              24
D96V10, multiclass
        clus
vv       OR5I1 MUTATED OR5I1 WILD-TYPE
  CLUS_1             1              19
  CLUS_2             8              83
  CLUS_3             2              55
D96V11, multiclass
        clus
vv       OR5I1 MUTATED OR5I1 WILD-TYPE
  CLUS_1             4              42
  CLUS_2             2              33
  CLUS_3             4              20
D96V12, multiclass
        clus
vv       OR5I1 MUTATED OR5I1 WILD-TYPE
  CLUS_1             1              10
  CLUS_2             5              41
  CLUS_3             4              44

Clustering(97) Variable = COL5A1 MUTATION ANALYSIS
D97V1, multiclass
[1] "Remove cluster labels:" "COL5A1 MUTATED"        
clus
  COL5A1 MUTATED COL5A1 WILD-TYPE 
               2               30 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2657 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-44-2659       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3398       TCGA-44-3918 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3772 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
D97V2, multiclass
[1] "Remove cluster labels:" "COL5A1 MUTATED"        
clus
  COL5A1 MUTATED COL5A1 WILD-TYPE 
               2               30 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2657 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-44-2659       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3398       TCGA-44-3918 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3772 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"COL5A1 WILD-TYPE" "COL5A1 WILD-TYPE" 
D97V3, multiclass
        clus
vv       COL5A1 MUTATED COL5A1 WILD-TYPE
  CLUS_1              7               63
  CLUS_2              5               63
  CLUS_3              1               33
D97V4, multiclass
        clus
vv       COL5A1 MUTATED COL5A1 WILD-TYPE
  CLUS_1              3               31
  CLUS_2              3               30
  CLUS_3              4               39
D97V5, multiclass
        clus
vv       COL5A1 MUTATED COL5A1 WILD-TYPE
  CLUS_1              5               68
  CLUS_2              0               23
  CLUS_3              4               35
D97V6, multiclass
        clus
vv       COL5A1 MUTATED COL5A1 WILD-TYPE
  CLUS_1              7               70
  CLUS_2              0               26
  CLUS_3              2               30
D97V7, multiclass
        clus
vv       COL5A1 MUTATED COL5A1 WILD-TYPE
  CLUS_1              4               45
  CLUS_2              5               64
  CLUS_3              4               49
D97V8, multiclass
        clus
vv       COL5A1 MUTATED COL5A1 WILD-TYPE
  CLUS_1              3               47
  CLUS_2              6               62
  CLUS_3              4               49
D97V9, multiclass
        clus
vv       COL5A1 MUTATED COL5A1 WILD-TYPE
  CLUS_1              6               53
  CLUS_2              6               74
  CLUS_3              1               28
D97V10, multiclass
        clus
vv       COL5A1 MUTATED COL5A1 WILD-TYPE
  CLUS_1              0               20
  CLUS_2              7               84
  CLUS_3              6               51
D97V11, multiclass
        clus
vv       COL5A1 MUTATED COL5A1 WILD-TYPE
  CLUS_1              5               41
  CLUS_2              2               33
  CLUS_3              2               22
D97V12, multiclass
        clus
vv       COL5A1 MUTATED COL5A1 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              3               43
  CLUS_3              6               42

Clustering(98) Variable = ITGAX MUTATION ANALYSIS
D98V1, multiclass
        clus
vv       ITGAX MUTATED ITGAX WILD-TYPE
  CLUS_1             1               4
  CLUS_2             2               7
  CLUS_3             0              12
  CLUS_4             0               6
D98V2, multiclass
        clus
vv       ITGAX MUTATED ITGAX WILD-TYPE
  CLUS_1             1               6
  CLUS_2             0              13
  CLUS_3             2              10
D98V3, multiclass
        clus
vv       ITGAX MUTATED ITGAX WILD-TYPE
  CLUS_1             7              63
  CLUS_2             7              61
  CLUS_3             3              31
D98V4, multiclass
        clus
vv       ITGAX MUTATED ITGAX WILD-TYPE
  CLUS_1             3              31
  CLUS_2             3              30
  CLUS_3             3              40
D98V5, multiclass
        clus
vv       ITGAX MUTATED ITGAX WILD-TYPE
  CLUS_1             7              66
  CLUS_2             3              20
  CLUS_3             4              35
D98V6, multiclass
        clus
vv       ITGAX MUTATED ITGAX WILD-TYPE
  CLUS_1             8              69
  CLUS_2             2              24
  CLUS_3             4              28
D98V7, multiclass
        clus
vv       ITGAX MUTATED ITGAX WILD-TYPE
  CLUS_1             4              45
  CLUS_2             9              60
  CLUS_3             4              49
D98V8, multiclass
        clus
vv       ITGAX MUTATED ITGAX WILD-TYPE
  CLUS_1             8              42
  CLUS_2             4              64
  CLUS_3             5              48
D98V9, multiclass
        clus
vv       ITGAX MUTATED ITGAX WILD-TYPE
  CLUS_1             6              53
  CLUS_2            10              70
  CLUS_3             0              29
D98V10, multiclass
        clus
vv       ITGAX MUTATED ITGAX WILD-TYPE
  CLUS_1             2              18
  CLUS_2             8              83
  CLUS_3             6              51
D98V11, multiclass
        clus
vv       ITGAX MUTATED ITGAX WILD-TYPE
  CLUS_1             5              41
  CLUS_2             2              33
  CLUS_3             1              23
D98V12, multiclass
        clus
vv       ITGAX MUTATED ITGAX WILD-TYPE
  CLUS_1             0              11
  CLUS_2             3              43
  CLUS_3             5              43

Clustering(99) Variable = FBXL7 MUTATION ANALYSIS
D99V1, multiclass
        clus
vv       FBXL7 MUTATED FBXL7 WILD-TYPE
  CLUS_1             0               5
  CLUS_2             2               7
  CLUS_3             0              12
  CLUS_4             1               5
D99V2, multiclass
        clus
vv       FBXL7 MUTATED FBXL7 WILD-TYPE
  CLUS_1             1               6
  CLUS_2             0              13
  CLUS_3             2              10
D99V3, multiclass
        clus
vv       FBXL7 MUTATED FBXL7 WILD-TYPE
  CLUS_1             6              64
  CLUS_2             5              63
  CLUS_3             6              28
D99V4, multiclass
        clus
vv       FBXL7 MUTATED FBXL7 WILD-TYPE
  CLUS_1             5              29
  CLUS_2             1              32
  CLUS_3             0              43
D99V5, multiclass
        clus
vv       FBXL7 MUTATED FBXL7 WILD-TYPE
  CLUS_1             4              69
  CLUS_2             2              21
  CLUS_3             4              35
D99V6, multiclass
        clus
vv       FBXL7 MUTATED FBXL7 WILD-TYPE
  CLUS_1             4              73
  CLUS_2             3              23
  CLUS_3             3              29
D99V7, multiclass
        clus
vv       FBXL7 MUTATED FBXL7 WILD-TYPE
  CLUS_1             3              46
  CLUS_2             8              61
  CLUS_3             6              47
D99V8, multiclass
        clus
vv       FBXL7 MUTATED FBXL7 WILD-TYPE
  CLUS_1             4              46
  CLUS_2             4              64
  CLUS_3             9              44
D99V9, multiclass
        clus
vv       FBXL7 MUTATED FBXL7 WILD-TYPE
  CLUS_1             4              55
  CLUS_2            10              70
  CLUS_3             2              27
D99V10, multiclass
        clus
vv       FBXL7 MUTATED FBXL7 WILD-TYPE
  CLUS_1             0              20
  CLUS_2            12              79
  CLUS_3             4              53
D99V11, multiclass
        clus
vv       FBXL7 MUTATED FBXL7 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             3              32
  CLUS_3             2              22
D99V12, multiclass
        clus
vv       FBXL7 MUTATED FBXL7 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             4              42
  CLUS_3             2              46

Clustering(100) Variable = SVEP1 MUTATION ANALYSIS
D100V1, multiclass
        clus
vv       SVEP1 MUTATED SVEP1 WILD-TYPE
  CLUS_1             0               5
  CLUS_2             2               7
  CLUS_3             1              11
  CLUS_4             0               6
D100V2, multiclass
        clus
vv       SVEP1 MUTATED SVEP1 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             1              12
  CLUS_3             2              10
D100V3, multiclass
        clus
vv       SVEP1 MUTATED SVEP1 WILD-TYPE
  CLUS_1             8              62
  CLUS_2             9              59
  CLUS_3             4              30
D100V4, multiclass
        clus
vv       SVEP1 MUTATED SVEP1 WILD-TYPE
  CLUS_1             3              31
  CLUS_2             5              28
  CLUS_3             3              40
D100V5, multiclass
        clus
vv       SVEP1 MUTATED SVEP1 WILD-TYPE
  CLUS_1             8              65
  CLUS_2             3              20
  CLUS_3             3              36
D100V6, multiclass
        clus
vv       SVEP1 MUTATED SVEP1 WILD-TYPE
  CLUS_1             7              70
  CLUS_2             5              21
  CLUS_3             2              30
D100V7, multiclass
        clus
vv       SVEP1 MUTATED SVEP1 WILD-TYPE
  CLUS_1             7              42
  CLUS_2             9              60
  CLUS_3             5              48
D100V8, multiclass
        clus
vv       SVEP1 MUTATED SVEP1 WILD-TYPE
  CLUS_1             6              44
  CLUS_2             9              59
  CLUS_3             6              47
D100V9, multiclass
        clus
vv       SVEP1 MUTATED SVEP1 WILD-TYPE
  CLUS_1            10              49
  CLUS_2             7              73
  CLUS_3             3              26
D100V10, multiclass
        clus
vv       SVEP1 MUTATED SVEP1 WILD-TYPE
  CLUS_1             1              19
  CLUS_2            10              81
  CLUS_3             9              48
D100V11, multiclass
        clus
vv       SVEP1 MUTATED SVEP1 WILD-TYPE
  CLUS_1             5              41
  CLUS_2             2              33
  CLUS_3             4              20
D100V12, multiclass
        clus
vv       SVEP1 MUTATED SVEP1 WILD-TYPE
  CLUS_1             2               9
  CLUS_2             3              43
  CLUS_3             6              42

Clustering(101) Variable = DEFB112 MUTATION ANALYSIS
D101V1, multiclass
[1] "Remove cluster labels:" "DEFB112 MUTATED"       
clus
  DEFB112 MUTATED DEFB112 WILD-TYPE 
                2                30 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2657 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3398        TCGA-44-3918 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-55-1594        TCGA-55-1595 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-55-1596        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-64-1680        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
D101V2, multiclass
[1] "Remove cluster labels:" "DEFB112 MUTATED"       
clus
  DEFB112 MUTATED DEFB112 WILD-TYPE 
                2                30 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2657 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3398        TCGA-44-3918 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-55-1594        TCGA-55-1595 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-55-1596        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-64-1680        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
D101V3, multiclass
        clus
vv       DEFB112 MUTATED DEFB112 WILD-TYPE
  CLUS_1               2                68
  CLUS_2               0                68
  CLUS_3               2                32
D101V4, multiclass
[1] "Remove cluster labels:" "DEFB112 MUTATED"       
clus
  DEFB112 MUTATED DEFB112 WILD-TYPE 
                2               108 
       TCGA-05-4384        TCGA-05-4390        TCGA-05-4396        TCGA-05-4405 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4410        TCGA-05-4415        TCGA-05-4417        TCGA-05-4424 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4425        TCGA-05-4427        TCGA-05-4433        TCGA-05-5420 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-5423        TCGA-05-5425        TCGA-05-5428        TCGA-05-5429 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-5715        TCGA-35-5375        TCGA-38-4631        TCGA-38-4632 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-38-6178        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-3918        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4487 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4512        TCGA-49-4514 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-49-6767        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-55-5899 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-55-6543        TCGA-55-6642        TCGA-55-6712        TCGA-64-5774 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5781        TCGA-64-5815 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-67-4679        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4676        TCGA-75-5122 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-75-5125        TCGA-75-5126        TCGA-75-5146        TCGA-75-5147 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-75-6203        TCGA-75-6205        TCGA-75-6207        TCGA-75-6211 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-75-6212        TCGA-80-5611        TCGA-86-6562        TCGA-91-6828 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
D101V5, multiclass
        clus
vv       DEFB112 MUTATED DEFB112 WILD-TYPE
  CLUS_1               2                71
  CLUS_2               0                23
  CLUS_3               1                38
D101V6, multiclass
        clus
vv       DEFB112 MUTATED DEFB112 WILD-TYPE
  CLUS_1               2                75
  CLUS_2               0                26
  CLUS_3               1                31
D101V7, multiclass
        clus
vv       DEFB112 MUTATED DEFB112 WILD-TYPE
  CLUS_1               0                49
  CLUS_2               2                67
  CLUS_3               2                51
D101V8, multiclass
        clus
vv       DEFB112 MUTATED DEFB112 WILD-TYPE
  CLUS_1               2                48
  CLUS_2               0                68
  CLUS_3               2                51
D101V9, multiclass
        clus
vv       DEFB112 MUTATED DEFB112 WILD-TYPE
  CLUS_1               0                59
  CLUS_2               3                77
  CLUS_3               0                29
D101V10, multiclass
        clus
vv       DEFB112 MUTATED DEFB112 WILD-TYPE
  CLUS_1               0                20
  CLUS_2               3                88
  CLUS_3               0                57
D101V11, multiclass
[1] "Remove cluster labels:" "DEFB112 MUTATED"       
clus
  DEFB112 MUTATED DEFB112 WILD-TYPE 
                1               104 
       TCGA-05-4384        TCGA-05-4390        TCGA-05-4396        TCGA-05-4405 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4410        TCGA-05-4415        TCGA-05-4417        TCGA-05-4424 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4425        TCGA-05-4427        TCGA-05-4433        TCGA-05-5420 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-5423        TCGA-05-5425        TCGA-05-5428        TCGA-05-5429 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-5715        TCGA-35-5375        TCGA-38-4631        TCGA-38-4632 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-38-6178        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4487        TCGA-49-4488 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-49-6767 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5044        TCGA-50-5045        TCGA-50-5049        TCGA-50-5051 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5055        TCGA-50-5066        TCGA-50-5068        TCGA-50-5072 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5930        TCGA-50-5931        TCGA-50-5932        TCGA-50-5933 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5935        TCGA-50-5936        TCGA-50-5939        TCGA-50-5941 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5942        TCGA-50-5944        TCGA-50-5946        TCGA-50-6590 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-6591        TCGA-50-6592        TCGA-50-6593        TCGA-50-6594 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-6595        TCGA-50-6597        TCGA-55-5899        TCGA-55-6543 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-64-5774        TCGA-64-5775 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5781        TCGA-64-5815        TCGA-67-4679 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4676        TCGA-75-5122        TCGA-75-5125 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-75-5126        TCGA-75-5146        TCGA-75-5147        TCGA-75-6203 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-75-6205        TCGA-75-6206        TCGA-75-6207        TCGA-75-6211 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-75-6212        TCGA-80-5611        TCGA-86-6562        TCGA-91-6828 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
D101V12, multiclass
[1] "Remove cluster labels:" "DEFB112 MUTATED"       
clus
  DEFB112 MUTATED DEFB112 WILD-TYPE 
                1               104 
       TCGA-05-4384        TCGA-05-4390        TCGA-05-4396        TCGA-05-4405 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4410        TCGA-05-4415        TCGA-05-4417        TCGA-05-4424 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-4425        TCGA-05-4427        TCGA-05-4433        TCGA-05-5420 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-5423        TCGA-05-5425        TCGA-05-5428        TCGA-05-5429 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-05-5715        TCGA-35-5375        TCGA-38-4631        TCGA-38-4632 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-38-6178        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4487        TCGA-49-4488 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-49-6767 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5044        TCGA-50-5045        TCGA-50-5049        TCGA-50-5051 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5055        TCGA-50-5066        TCGA-50-5068        TCGA-50-5072 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5930        TCGA-50-5931        TCGA-50-5932        TCGA-50-5933 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5935        TCGA-50-5936        TCGA-50-5939        TCGA-50-5941 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-5942        TCGA-50-5944        TCGA-50-5946        TCGA-50-6590 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-6591        TCGA-50-6592        TCGA-50-6593        TCGA-50-6594 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-50-6595        TCGA-50-6597        TCGA-55-5899        TCGA-55-6543 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-64-5774        TCGA-64-5775 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5781        TCGA-64-5815        TCGA-67-4679 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4676        TCGA-75-5122        TCGA-75-5125 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-75-5126        TCGA-75-5146        TCGA-75-5147        TCGA-75-6203 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-75-6205        TCGA-75-6206        TCGA-75-6207        TCGA-75-6211 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-75-6212        TCGA-80-5611        TCGA-86-6562        TCGA-91-6828 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" "DEFB112 WILD-TYPE" 

Clustering(102) Variable = ARID2 MUTATION ANALYSIS
D102V1, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             0               5
  CLUS_2             1               8
  CLUS_3             3               9
  CLUS_4             0               6
D102V2, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             3              10
  CLUS_3             1              11
D102V3, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             2              68
  CLUS_2             8              60
  CLUS_3             2              32
D102V4, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             2              32
  CLUS_2             2              31
  CLUS_3             2              41
D102V5, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             4              69
  CLUS_2             5              18
  CLUS_3             2              37
D102V6, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             4              73
  CLUS_2             5              21
  CLUS_3             2              30
D102V7, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             5              44
  CLUS_2             2              67
  CLUS_3             5              48
D102V8, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             1              49
  CLUS_2             7              61
  CLUS_3             4              49
D102V9, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             6              53
  CLUS_2             5              75
  CLUS_3             1              28
D102V10, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             2              18
  CLUS_2             5              86
  CLUS_3             5              52
D102V11, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             2              33
  CLUS_3             2              22
D102V12, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             1              10
  CLUS_2             3              43
  CLUS_3             2              46

Clustering(103) Variable = ANKRD44 MUTATION ANALYSIS
D103V1, multiclass
[1] "Remove cluster labels:" "ANKRD44 MUTATED"       
clus
  ANKRD44 MUTATED ANKRD44 WILD-TYPE 
                1                31 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2656 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3398 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-55-1592 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-55-1594        TCGA-55-1595        TCGA-55-1596        TCGA-64-1676 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1680        TCGA-67-3770 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
D103V2, multiclass
[1] "Remove cluster labels:" "ANKRD44 MUTATED"       
clus
  ANKRD44 MUTATED ANKRD44 WILD-TYPE 
                1                31 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2656 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3398 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-55-1592 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-55-1594        TCGA-55-1595        TCGA-55-1596        TCGA-64-1676 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1680        TCGA-67-3770 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" "ANKRD44 WILD-TYPE" 
D103V3, multiclass
        clus
vv       ANKRD44 MUTATED ANKRD44 WILD-TYPE
  CLUS_1               3                67
  CLUS_2               5                63
  CLUS_3               1                33
D103V4, multiclass
        clus
vv       ANKRD44 MUTATED ANKRD44 WILD-TYPE
  CLUS_1               3                31
  CLUS_2               4                29
  CLUS_3               1                42
D103V5, multiclass
        clus
vv       ANKRD44 MUTATED ANKRD44 WILD-TYPE
  CLUS_1               4                69
  CLUS_2               0                23
  CLUS_3               1                38
D103V6, multiclass
        clus
vv       ANKRD44 MUTATED ANKRD44 WILD-TYPE
  CLUS_1               2                75
  CLUS_2               1                25
  CLUS_3               2                30
D103V7, multiclass
        clus
vv       ANKRD44 MUTATED ANKRD44 WILD-TYPE
  CLUS_1               2                47
  CLUS_2               3                66
  CLUS_3               3                50
D103V8, multiclass
        clus
vv       ANKRD44 MUTATED ANKRD44 WILD-TYPE
  CLUS_1               3                47
  CLUS_2               3                65
  CLUS_3               2                51
D103V9, multiclass
        clus
vv       ANKRD44 MUTATED ANKRD44 WILD-TYPE
  CLUS_1               3                56
  CLUS_2               5                75
  CLUS_3               1                28
D103V10, multiclass
        clus
vv       ANKRD44 MUTATED ANKRD44 WILD-TYPE
  CLUS_1               0                20
  CLUS_2               6                85
  CLUS_3               3                54
D103V11, multiclass
        clus
vv       ANKRD44 MUTATED ANKRD44 WILD-TYPE
  CLUS_1               4                42
  CLUS_2               2                33
  CLUS_3               2                22
D103V12, multiclass
        clus
vv       ANKRD44 MUTATED ANKRD44 WILD-TYPE
  CLUS_1               0                11
  CLUS_2               4                42
  CLUS_3               4                44

Clustering(104) Variable = OR4C16 MUTATION ANALYSIS
D104V1, multiclass
[1] "Remove cluster labels:" "OR4C16 MUTATED"        
clus
  OR4C16 MUTATED OR4C16 WILD-TYPE 
               2               30 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-3918       TCGA-44-3919       TCGA-55-1592       TCGA-55-1594 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-55-1596       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-64-1680       TCGA-67-3770       TCGA-67-3771       TCGA-67-3772 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
D104V2, multiclass
[1] "Remove cluster labels:" "OR4C16 MUTATED"        
clus
  OR4C16 MUTATED OR4C16 WILD-TYPE 
               2               30 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-44-3918       TCGA-44-3919       TCGA-55-1592       TCGA-55-1594 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-55-1596       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-64-1680       TCGA-67-3770       TCGA-67-3771       TCGA-67-3772 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"OR4C16 WILD-TYPE" "OR4C16 WILD-TYPE" 
D104V3, multiclass
        clus
vv       OR4C16 MUTATED OR4C16 WILD-TYPE
  CLUS_1              4               66
  CLUS_2              8               60
  CLUS_3              2               32
D104V4, multiclass
        clus
vv       OR4C16 MUTATED OR4C16 WILD-TYPE
  CLUS_1              2               32
  CLUS_2              3               30
  CLUS_3              7               36
D104V5, multiclass
        clus
vv       OR4C16 MUTATED OR4C16 WILD-TYPE
  CLUS_1              7               66
  CLUS_2              0               23
  CLUS_3              5               34
D104V6, multiclass
        clus
vv       OR4C16 MUTATED OR4C16 WILD-TYPE
  CLUS_1              8               69
  CLUS_2              1               25
  CLUS_3              3               29
D104V7, multiclass
        clus
vv       OR4C16 MUTATED OR4C16 WILD-TYPE
  CLUS_1              0               49
  CLUS_2              9               60
  CLUS_3              5               48
D104V8, multiclass
        clus
vv       OR4C16 MUTATED OR4C16 WILD-TYPE
  CLUS_1              6               44
  CLUS_2              3               65
  CLUS_3              5               48
D104V9, multiclass
        clus
vv       OR4C16 MUTATED OR4C16 WILD-TYPE
  CLUS_1              3               56
  CLUS_2              9               71
  CLUS_3              2               27
D104V10, multiclass
        clus
vv       OR4C16 MUTATED OR4C16 WILD-TYPE
  CLUS_1              1               19
  CLUS_2              9               82
  CLUS_3              4               53
D104V11, multiclass
        clus
vv       OR4C16 MUTATED OR4C16 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              7               28
  CLUS_3              1               23
D104V12, multiclass
        clus
vv       OR4C16 MUTATED OR4C16 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              7               39
  CLUS_3              4               44

Clustering(105) Variable = EPS8L3 MUTATION ANALYSIS
D105V1, multiclass
[1] "Remove cluster labels:" "EPS8L3 MUTATED"        
clus
  EPS8L3 MUTATED EPS8L3 WILD-TYPE 
               2               30 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-35-4122       TCGA-44-2655       TCGA-44-2656       TCGA-44-2657 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-2659       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3398       TCGA-44-3918 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1594       TCGA-55-1595 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-55-1596       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-64-1680       TCGA-67-3770       TCGA-67-3771       TCGA-67-3772 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
D105V2, multiclass
[1] "Remove cluster labels:" "EPS8L3 MUTATED"        
clus
  EPS8L3 MUTATED EPS8L3 WILD-TYPE 
               2               30 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-35-4122       TCGA-44-2655       TCGA-44-2656       TCGA-44-2657 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-2659       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3398       TCGA-44-3918 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1594       TCGA-55-1595 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-55-1596       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-64-1680       TCGA-67-3770       TCGA-67-3771       TCGA-67-3772 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
D105V3, multiclass
        clus
vv       EPS8L3 MUTATED EPS8L3 WILD-TYPE
  CLUS_1              3               67
  CLUS_2              1               67
  CLUS_3              0               34
D105V4, multiclass
[1] "Remove cluster labels:" "EPS8L3 MUTATED"        
clus
  EPS8L3 MUTATED EPS8L3 WILD-TYPE 
               1              109 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4396       TCGA-05-4405 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4410       TCGA-05-4415       TCGA-05-4417       TCGA-05-4424 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4425       TCGA-05-4427       TCGA-05-4433       TCGA-05-5420 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-5423       TCGA-05-5425       TCGA-05-5428       TCGA-05-5429 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-5715       TCGA-35-5375       TCGA-38-4631       TCGA-38-4632 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-38-6178       TCGA-44-2656       TCGA-44-2665       TCGA-44-2666 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3918       TCGA-44-4112       TCGA-44-5643 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-5645       TCGA-44-6144       TCGA-44-6145       TCGA-44-6146 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-6147       TCGA-44-6148       TCGA-44-6774       TCGA-44-6775 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-6776       TCGA-44-6777       TCGA-44-6778       TCGA-44-6779 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-49-4487       TCGA-49-4488       TCGA-49-4490       TCGA-49-4512 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-49-4514       TCGA-49-6742       TCGA-49-6743       TCGA-49-6744 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-49-6745       TCGA-49-6767       TCGA-50-5044       TCGA-50-5045 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-5049       TCGA-50-5051       TCGA-50-5055       TCGA-50-5066 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-5068       TCGA-50-5072       TCGA-50-5930       TCGA-50-5931 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-5932       TCGA-50-5933       TCGA-50-5935       TCGA-50-5936 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-5939       TCGA-50-5941       TCGA-50-5942       TCGA-50-5944 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-5946       TCGA-50-6590       TCGA-50-6591       TCGA-50-6592 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-4679       TCGA-67-6215 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-73-4676       TCGA-75-5122       TCGA-75-5125       TCGA-75-5126 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-75-5146       TCGA-75-5147       TCGA-75-6203       TCGA-75-6205 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-75-6207       TCGA-75-6211       TCGA-75-6212       TCGA-80-5611 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-86-6562       TCGA-91-6828       TCGA-91-6829       TCGA-91-6831 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-91-6836 
"EPS8L3 WILD-TYPE" 
D105V5, multiclass
        clus
vv       EPS8L3 MUTATED EPS8L3 WILD-TYPE
  CLUS_1              2               71
  CLUS_2              0               23
  CLUS_3              1               38
D105V6, multiclass
        clus
vv       EPS8L3 MUTATED EPS8L3 WILD-TYPE
  CLUS_1              3               74
  CLUS_2              0               26
  CLUS_3              0               32
D105V7, multiclass
        clus
vv       EPS8L3 MUTATED EPS8L3 WILD-TYPE
  CLUS_1              1               48
  CLUS_2              2               67
  CLUS_3              1               52
D105V8, multiclass
        clus
vv       EPS8L3 MUTATED EPS8L3 WILD-TYPE
  CLUS_1              1               49
  CLUS_2              1               67
  CLUS_3              2               51
D105V9, multiclass
        clus
vv       EPS8L3 MUTATED EPS8L3 WILD-TYPE
  CLUS_1              0               59
  CLUS_2              4               76
  CLUS_3              0               29
D105V10, multiclass
        clus
vv       EPS8L3 MUTATED EPS8L3 WILD-TYPE
  CLUS_1              0               20
  CLUS_2              4               87
  CLUS_3              0               57
D105V11, multiclass
[1] "Remove cluster labels:" "EPS8L3 MUTATED"        
clus
  EPS8L3 MUTATED EPS8L3 WILD-TYPE 
               1              104 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4396       TCGA-05-4405 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4410       TCGA-05-4415       TCGA-05-4417       TCGA-05-4424 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4425       TCGA-05-4427       TCGA-05-4433       TCGA-05-5420 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-5423       TCGA-05-5425       TCGA-05-5428       TCGA-05-5429 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-5715       TCGA-35-5375       TCGA-38-4631       TCGA-38-4632 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-38-6178       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4487       TCGA-49-4488 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-49-4490       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-49-6767 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-5044       TCGA-50-5045       TCGA-50-5049       TCGA-50-5051 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-5055       TCGA-50-5066       TCGA-50-5068       TCGA-50-5072 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-5930       TCGA-50-5931       TCGA-50-5932       TCGA-50-5933 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-5935       TCGA-50-5936       TCGA-50-5939       TCGA-50-5941 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-5942       TCGA-50-5944       TCGA-50-5946       TCGA-50-6590 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-6591       TCGA-50-6592       TCGA-50-6593       TCGA-50-6594 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-6595       TCGA-50-6597       TCGA-55-5899       TCGA-55-6543 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-55-6642       TCGA-55-6712       TCGA-64-5774       TCGA-64-5775 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-64-5778       TCGA-64-5779       TCGA-64-5781       TCGA-64-5815 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-67-4679       TCGA-67-6215       TCGA-67-6216       TCGA-67-6217 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4658       TCGA-73-4676       TCGA-75-5122 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-75-5125       TCGA-75-5126       TCGA-75-5146       TCGA-75-5147 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-75-6203       TCGA-75-6205       TCGA-75-6206       TCGA-75-6207 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-75-6211       TCGA-75-6212       TCGA-80-5611       TCGA-86-6562 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6836 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
D105V12, multiclass
[1] "Remove cluster labels:" "EPS8L3 MUTATED"        
clus
  EPS8L3 MUTATED EPS8L3 WILD-TYPE 
               1              104 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4396       TCGA-05-4405 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4410       TCGA-05-4415       TCGA-05-4417       TCGA-05-4424 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-4425       TCGA-05-4427       TCGA-05-4433       TCGA-05-5420 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-5423       TCGA-05-5425       TCGA-05-5428       TCGA-05-5429 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-05-5715       TCGA-35-5375       TCGA-38-4631       TCGA-38-4632 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-38-6178       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-44-6778       TCGA-44-6779       TCGA-49-4487       TCGA-49-4488 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-49-4490       TCGA-49-4512       TCGA-49-4514       TCGA-49-6742 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-49-6743       TCGA-49-6744       TCGA-49-6745       TCGA-49-6767 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-5044       TCGA-50-5045       TCGA-50-5049       TCGA-50-5051 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-5055       TCGA-50-5066       TCGA-50-5068       TCGA-50-5072 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-5930       TCGA-50-5931       TCGA-50-5932       TCGA-50-5933 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-5935       TCGA-50-5936       TCGA-50-5939       TCGA-50-5941 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-5942       TCGA-50-5944       TCGA-50-5946       TCGA-50-6590 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-6591       TCGA-50-6592       TCGA-50-6593       TCGA-50-6594 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-50-6595       TCGA-50-6597       TCGA-55-5899       TCGA-55-6543 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-55-6642       TCGA-55-6712       TCGA-64-5774       TCGA-64-5775 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-64-5778       TCGA-64-5779       TCGA-64-5781       TCGA-64-5815 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-67-4679       TCGA-67-6215       TCGA-67-6216       TCGA-67-6217 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4658       TCGA-73-4676       TCGA-75-5122 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-75-5125       TCGA-75-5126       TCGA-75-5146       TCGA-75-5147 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-75-6203       TCGA-75-6205       TCGA-75-6206       TCGA-75-6207 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-75-6211       TCGA-75-6212       TCGA-80-5611       TCGA-86-6562 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 
      TCGA-91-6828       TCGA-91-6829       TCGA-91-6831       TCGA-91-6836 
"EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" "EPS8L3 WILD-TYPE" 

Clustering(106) Variable = TARS2 MUTATION ANALYSIS
D106V1, multiclass
        clus
vv       TARS2 MUTATED TARS2 WILD-TYPE
  CLUS_1             0               5
  CLUS_2             1               8
  CLUS_3             1              11
  CLUS_4             1               5
D106V2, multiclass
        clus
vv       TARS2 MUTATED TARS2 WILD-TYPE
  CLUS_1             1               6
  CLUS_2             1              12
  CLUS_3             1              11
D106V3, multiclass
        clus
vv       TARS2 MUTATED TARS2 WILD-TYPE
  CLUS_1             4              66
  CLUS_2             1              67
  CLUS_3             3              31
D106V4, multiclass
        clus
vv       TARS2 MUTATED TARS2 WILD-TYPE
  CLUS_1             1              33
  CLUS_2             4              29
  CLUS_3             0              43
D106V5, multiclass
        clus
vv       TARS2 MUTATED TARS2 WILD-TYPE
  CLUS_1             2              71
  CLUS_2             0              23
  CLUS_3             4              35
D106V6, multiclass
        clus
vv       TARS2 MUTATED TARS2 WILD-TYPE
  CLUS_1             3              74
  CLUS_2             0              26
  CLUS_3             3              29
D106V7, multiclass
        clus
vv       TARS2 MUTATED TARS2 WILD-TYPE
  CLUS_1             1              48
  CLUS_2             4              65
  CLUS_3             3              50
D106V8, multiclass
        clus
vv       TARS2 MUTATED TARS2 WILD-TYPE
  CLUS_1             4              46
  CLUS_2             1              67
  CLUS_3             3              50
D106V9, multiclass
        clus
vv       TARS2 MUTATED TARS2 WILD-TYPE
  CLUS_1             3              56
  CLUS_2             3              77
  CLUS_3             2              27
D106V10, multiclass
        clus
vv       TARS2 MUTATED TARS2 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             5              86
  CLUS_3             3              54
D106V11, multiclass
        clus
vv       TARS2 MUTATED TARS2 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             2              33
  CLUS_3             1              23
D106V12, multiclass
        clus
vv       TARS2 MUTATED TARS2 WILD-TYPE
  CLUS_1             1              10
  CLUS_2             2              44
  CLUS_3             1              47

Clustering(107) Variable = SPEG MUTATION ANALYSIS
D107V1, multiclass
        clus
vv       SPEG MUTATED SPEG WILD-TYPE
  CLUS_1            1              4
  CLUS_2            1              8
  CLUS_3            0             12
  CLUS_4            1              5
D107V2, multiclass
        clus
vv       SPEG MUTATED SPEG WILD-TYPE
  CLUS_1            1              6
  CLUS_2            1             12
  CLUS_3            1             11
D107V3, multiclass
        clus
vv       SPEG MUTATED SPEG WILD-TYPE
  CLUS_1            6             64
  CLUS_2            9             59
  CLUS_3            1             33
D107V4, multiclass
        clus
vv       SPEG MUTATED SPEG WILD-TYPE
  CLUS_1            1             33
  CLUS_2            5             28
  CLUS_3            5             38
D107V5, multiclass
        clus
vv       SPEG MUTATED SPEG WILD-TYPE
  CLUS_1            7             66
  CLUS_2            3             20
  CLUS_3            2             37
D107V6, multiclass
        clus
vv       SPEG MUTATED SPEG WILD-TYPE
  CLUS_1            9             68
  CLUS_2            3             23
  CLUS_3            0             32
D107V7, multiclass
        clus
vv       SPEG MUTATED SPEG WILD-TYPE
  CLUS_1            3             46
  CLUS_2           11             58
  CLUS_3            2             51
D107V8, multiclass
        clus
vv       SPEG MUTATED SPEG WILD-TYPE
  CLUS_1            6             44
  CLUS_2            5             63
  CLUS_3            5             48
D107V9, multiclass
        clus
vv       SPEG MUTATED SPEG WILD-TYPE
  CLUS_1            5             54
  CLUS_2            9             71
  CLUS_3            2             27
D107V10, multiclass
        clus
vv       SPEG MUTATED SPEG WILD-TYPE
  CLUS_1            1             19
  CLUS_2           12             79
  CLUS_3            3             54
D107V11, multiclass
        clus
vv       SPEG MUTATED SPEG WILD-TYPE
  CLUS_1            4             42
  CLUS_2            5             30
  CLUS_3            1             23
D107V12, multiclass
        clus
vv       SPEG MUTATED SPEG WILD-TYPE
  CLUS_1            0             11
  CLUS_2            7             39
  CLUS_3            3             45

Clustering(108) Variable = GPR174 MUTATION ANALYSIS
D108V1, multiclass
D108V2, multiclass
D108V3, multiclass
        clus
vv       GPR174 MUTATED GPR174 WILD-TYPE
  CLUS_1              3               67
  CLUS_2              2               66
  CLUS_3              1               33
D108V4, multiclass
        clus
vv       GPR174 MUTATED GPR174 WILD-TYPE
  CLUS_1              2               32
  CLUS_2              2               31
  CLUS_3              1               42
D108V5, multiclass
        clus
vv       GPR174 MUTATED GPR174 WILD-TYPE
  CLUS_1              4               69
  CLUS_2              1               22
  CLUS_3              1               38
D108V6, multiclass
        clus
vv       GPR174 MUTATED GPR174 WILD-TYPE
  CLUS_1              5               72
  CLUS_2              1               25
  CLUS_3              0               32
D108V7, multiclass
        clus
vv       GPR174 MUTATED GPR174 WILD-TYPE
  CLUS_1              2               47
  CLUS_2              2               67
  CLUS_3              2               51
D108V8, multiclass
        clus
vv       GPR174 MUTATED GPR174 WILD-TYPE
  CLUS_1              1               49
  CLUS_2              2               66
  CLUS_3              3               50
D108V9, multiclass
        clus
vv       GPR174 MUTATED GPR174 WILD-TYPE
  CLUS_1              1               58
  CLUS_2              3               77
  CLUS_3              2               27
D108V10, multiclass
        clus
vv       GPR174 MUTATED GPR174 WILD-TYPE
  CLUS_1              2               18
  CLUS_2              3               88
  CLUS_3              1               56
D108V11, multiclass
        clus
vv       GPR174 MUTATED GPR174 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              2               33
  CLUS_3              1               23
D108V12, multiclass
        clus
vv       GPR174 MUTATED GPR174 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              3               43
  CLUS_3              2               46

Clustering(109) Variable = KIF9 MUTATION ANALYSIS
D109V1, multiclass
[1] "Remove cluster labels:" "KIF9 MUTATED"          
clus
  KIF9 MUTATED KIF9 WILD-TYPE 
             1             31 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2656 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2659     TCGA-44-2661     TCGA-44-2662 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-44-2665     TCGA-44-2666     TCGA-44-2668     TCGA-44-3398 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-44-3918     TCGA-44-3919     TCGA-44-4112     TCGA-55-1592 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-55-1594     TCGA-55-1595     TCGA-55-1596     TCGA-64-1676 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-64-1677     TCGA-64-1680     TCGA-67-3770     TCGA-67-3771 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
D109V2, multiclass
[1] "Remove cluster labels:" "KIF9 MUTATED"          
clus
  KIF9 MUTATED KIF9 WILD-TYPE 
             1             31 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2656 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2659     TCGA-44-2661     TCGA-44-2662 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-44-2665     TCGA-44-2666     TCGA-44-2668     TCGA-44-3398 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-44-3918     TCGA-44-3919     TCGA-44-4112     TCGA-55-1592 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-55-1594     TCGA-55-1595     TCGA-55-1596     TCGA-64-1676 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-64-1677     TCGA-64-1680     TCGA-67-3770     TCGA-67-3771 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"KIF9 WILD-TYPE" "KIF9 WILD-TYPE" "KIF9 WILD-TYPE" 
D109V3, multiclass
        clus
vv       KIF9 MUTATED KIF9 WILD-TYPE
  CLUS_1            3             67
  CLUS_2            3             65
  CLUS_3            1             33
D109V4, multiclass
        clus
vv       KIF9 MUTATED KIF9 WILD-TYPE
  CLUS_1            1             33
  CLUS_2            2             31
  CLUS_3            1             42
D109V5, multiclass
        clus
vv       KIF9 MUTATED KIF9 WILD-TYPE
  CLUS_1            2             71
  CLUS_2            2             21
  CLUS_3            3             36
D109V6, multiclass
        clus
vv       KIF9 MUTATED KIF9 WILD-TYPE
  CLUS_1            1             76
  CLUS_2            3             23
  CLUS_3            3             29
D109V7, multiclass
        clus
vv       KIF9 MUTATED KIF9 WILD-TYPE
  CLUS_1            2             47
  CLUS_2            1             68
  CLUS_3            4             49
D109V8, multiclass
        clus
vv       KIF9 MUTATED KIF9 WILD-TYPE
  CLUS_1            1             49
  CLUS_2            3             65
  CLUS_3            3             50
D109V9, multiclass
        clus
vv       KIF9 MUTATED KIF9 WILD-TYPE
  CLUS_1            3             56
  CLUS_2            4             76
  CLUS_3            0             29
D109V10, multiclass
        clus
vv       KIF9 MUTATED KIF9 WILD-TYPE
  CLUS_1            2             18
  CLUS_2            5             86
  CLUS_3            0             57
D109V11, multiclass
        clus
vv       KIF9 MUTATED KIF9 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            1             34
  CLUS_3            1             23
D109V12, multiclass
        clus
vv       KIF9 MUTATED KIF9 WILD-TYPE
  CLUS_1            1             10
  CLUS_2            1             45
  CLUS_3            2             46

Clustering(110) Variable = OR2T27 MUTATION ANALYSIS
D110V1, multiclass
[1] "Remove cluster labels:" "OR2T27 MUTATED"        
clus
  OR2T27 MUTATED OR2T27 WILD-TYPE 
               2               30 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3398       TCGA-44-3918 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3772 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
D110V2, multiclass
[1] "Remove cluster labels:" "OR2T27 MUTATED"        
clus
  OR2T27 MUTATED OR2T27 WILD-TYPE 
               2               30 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3398       TCGA-44-3918 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3772 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"OR2T27 WILD-TYPE" "OR2T27 WILD-TYPE" 
D110V3, multiclass
        clus
vv       OR2T27 MUTATED OR2T27 WILD-TYPE
  CLUS_1              1               69
  CLUS_2              4               64
  CLUS_3              3               31
D110V4, multiclass
        clus
vv       OR2T27 MUTATED OR2T27 WILD-TYPE
  CLUS_1              2               32
  CLUS_2              2               31
  CLUS_3              2               41
D110V5, multiclass
        clus
vv       OR2T27 MUTATED OR2T27 WILD-TYPE
  CLUS_1              2               71
  CLUS_2              1               22
  CLUS_3              3               36
D110V6, multiclass
        clus
vv       OR2T27 MUTATED OR2T27 WILD-TYPE
  CLUS_1              2               75
  CLUS_2              1               25
  CLUS_3              3               29
D110V7, multiclass
        clus
vv       OR2T27 MUTATED OR2T27 WILD-TYPE
  CLUS_1              1               48
  CLUS_2              4               65
  CLUS_3              3               50
D110V8, multiclass
        clus
vv       OR2T27 MUTATED OR2T27 WILD-TYPE
  CLUS_1              2               48
  CLUS_2              2               66
  CLUS_3              4               49
D110V9, multiclass
        clus
vv       OR2T27 MUTATED OR2T27 WILD-TYPE
  CLUS_1              1               58
  CLUS_2              4               76
  CLUS_3              3               26
D110V10, multiclass
        clus
vv       OR2T27 MUTATED OR2T27 WILD-TYPE
  CLUS_1              1               19
  CLUS_2              6               85
  CLUS_3              1               56
D110V11, multiclass
        clus
vv       OR2T27 MUTATED OR2T27 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              3               32
  CLUS_3              2               22
D110V12, multiclass
        clus
vv       OR2T27 MUTATED OR2T27 WILD-TYPE
  CLUS_1              1               10
  CLUS_2              4               42
  CLUS_3              1               47

Clustering(111) Variable = CYP1A1 MUTATION ANALYSIS
D111V1, multiclass
[1] "Remove cluster labels:" "CYP1A1 MUTATED"        
clus
  CYP1A1 MUTATED CYP1A1 WILD-TYPE 
               2               30 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-3918       TCGA-44-3919       TCGA-44-4112       TCGA-55-1594 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3772 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
D111V2, multiclass
[1] "Remove cluster labels:" "CYP1A1 MUTATED"        
clus
  CYP1A1 MUTATED CYP1A1 WILD-TYPE 
               2               30 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-44-3918       TCGA-44-3919       TCGA-44-4112       TCGA-55-1594 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3772 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"CYP1A1 WILD-TYPE" "CYP1A1 WILD-TYPE" 
D111V3, multiclass
        clus
vv       CYP1A1 MUTATED CYP1A1 WILD-TYPE
  CLUS_1              2               68
  CLUS_2              1               67
  CLUS_3              1               33
D111V4, multiclass
D111V5, multiclass
        clus
vv       CYP1A1 MUTATED CYP1A1 WILD-TYPE
  CLUS_1              2               71
  CLUS_2              0               23
  CLUS_3              1               38
D111V6, multiclass
        clus
vv       CYP1A1 MUTATED CYP1A1 WILD-TYPE
  CLUS_1              2               75
  CLUS_2              0               26
  CLUS_3              1               31
D111V7, multiclass
        clus
vv       CYP1A1 MUTATED CYP1A1 WILD-TYPE
  CLUS_1              1               48
  CLUS_2              1               68
  CLUS_3              2               51
D111V8, multiclass
        clus
vv       CYP1A1 MUTATED CYP1A1 WILD-TYPE
  CLUS_1              1               49
  CLUS_2              1               67
  CLUS_3              2               51
D111V9, multiclass
        clus
vv       CYP1A1 MUTATED CYP1A1 WILD-TYPE
  CLUS_1              0               59
  CLUS_2              3               77
  CLUS_3              0               29
D111V10, multiclass
        clus
vv       CYP1A1 MUTATED CYP1A1 WILD-TYPE
  CLUS_1              0               20
  CLUS_2              3               88
  CLUS_3              0               57
D111V11, multiclass
D111V12, multiclass

Clustering(112) Variable = C1ORF173 MUTATION ANALYSIS
D112V1, multiclass
        clus
vv       C1ORF173 MUTATED C1ORF173 WILD-TYPE
  CLUS_1                1                  4
  CLUS_2                2                  7
  CLUS_3                1                 11
  CLUS_4                0                  6
D112V2, multiclass
        clus
vv       C1ORF173 MUTATED C1ORF173 WILD-TYPE
  CLUS_1                0                  7
  CLUS_2                2                 11
  CLUS_3                2                 10
D112V3, multiclass
        clus
vv       C1ORF173 MUTATED C1ORF173 WILD-TYPE
  CLUS_1                9                 61
  CLUS_2               10                 58
  CLUS_3                6                 28
D112V4, multiclass
        clus
vv       C1ORF173 MUTATED C1ORF173 WILD-TYPE
  CLUS_1                5                 29
  CLUS_2                8                 25
  CLUS_3                3                 40
D112V5, multiclass
        clus
vv       C1ORF173 MUTATED C1ORF173 WILD-TYPE
  CLUS_1               10                 63
  CLUS_2                1                 22
  CLUS_3                8                 31
D112V6, multiclass
        clus
vv       C1ORF173 MUTATED C1ORF173 WILD-TYPE
  CLUS_1               11                 66
  CLUS_2                2                 24
  CLUS_3                6                 26
D112V7, multiclass
        clus
vv       C1ORF173 MUTATED C1ORF173 WILD-TYPE
  CLUS_1                6                 43
  CLUS_2               11                 58
  CLUS_3                8                 45
D112V8, multiclass
        clus
vv       C1ORF173 MUTATED C1ORF173 WILD-TYPE
  CLUS_1               10                 40
  CLUS_2                8                 60
  CLUS_3                7                 46
D112V9, multiclass
        clus
vv       C1ORF173 MUTATED C1ORF173 WILD-TYPE
  CLUS_1                5                 54
  CLUS_2               17                 63
  CLUS_3                3                 26
D112V10, multiclass
        clus
vv       C1ORF173 MUTATED C1ORF173 WILD-TYPE
  CLUS_1                0                 20
  CLUS_2               20                 71
  CLUS_3                5                 52
D112V11, multiclass
        clus
vv       C1ORF173 MUTATED C1ORF173 WILD-TYPE
  CLUS_1                7                 39
  CLUS_2                7                 28
  CLUS_3                1                 23
D112V12, multiclass
        clus
vv       C1ORF173 MUTATED C1ORF173 WILD-TYPE
  CLUS_1                0                 11
  CLUS_2                8                 38
  CLUS_3                7                 41

Clustering(113) Variable = SH2D2A MUTATION ANALYSIS
D113V1, multiclass
[1] "Remove cluster labels:" "SH2D2A MUTATED"        
clus
  SH2D2A MUTATED SH2D2A WILD-TYPE 
               2               30 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-4122 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-35-4123       TCGA-44-2655       TCGA-44-2656       TCGA-44-2657 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-44-2659       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3398       TCGA-44-3918 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3772 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
D113V2, multiclass
[1] "Remove cluster labels:" "SH2D2A MUTATED"        
clus
  SH2D2A MUTATED SH2D2A WILD-TYPE 
               2               30 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-4122 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-35-4123       TCGA-44-2655       TCGA-44-2656       TCGA-44-2657 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-44-2659       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3398       TCGA-44-3918 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3772 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"SH2D2A WILD-TYPE" "SH2D2A WILD-TYPE" 
D113V3, multiclass
        clus
vv       SH2D2A MUTATED SH2D2A WILD-TYPE
  CLUS_1              0               70
  CLUS_2              3               65
  CLUS_3              3               31
D113V4, multiclass
        clus
vv       SH2D2A MUTATED SH2D2A WILD-TYPE
  CLUS_1              1               33
  CLUS_2              1               32
  CLUS_3              2               41
D113V5, multiclass
        clus
vv       SH2D2A MUTATED SH2D2A WILD-TYPE
  CLUS_1              2               71
  CLUS_2              2               21
  CLUS_3              1               38
D113V6, multiclass
        clus
vv       SH2D2A MUTATED SH2D2A WILD-TYPE
  CLUS_1              1               76
  CLUS_2              3               23
  CLUS_3              1               31
D113V7, multiclass
        clus
vv       SH2D2A MUTATED SH2D2A WILD-TYPE
  CLUS_1              3               46
  CLUS_2              0               69
  CLUS_3              3               50
D113V8, multiclass
        clus
vv       SH2D2A MUTATED SH2D2A WILD-TYPE
  CLUS_1              0               50
  CLUS_2              4               64
  CLUS_3              2               51
D113V9, multiclass
        clus
vv       SH2D2A MUTATED SH2D2A WILD-TYPE
  CLUS_1              3               56
  CLUS_2              2               78
  CLUS_3              1               28
D113V10, multiclass
        clus
vv       SH2D2A MUTATED SH2D2A WILD-TYPE
  CLUS_1              0               20
  CLUS_2              3               88
  CLUS_3              3               54
D113V11, multiclass
        clus
vv       SH2D2A MUTATED SH2D2A WILD-TYPE
  CLUS_1              4               42
  CLUS_2              0               35
  CLUS_3              0               24
D113V12, multiclass
        clus
vv       SH2D2A MUTATED SH2D2A WILD-TYPE
  CLUS_1              0               11
  CLUS_2              0               46
  CLUS_3              4               44

Clustering(114) Variable = CD5L MUTATION ANALYSIS
D114V1, multiclass
[1] "Remove cluster labels:" "CD5L MUTATED"          
clus
  CD5L MUTATED CD5L WILD-TYPE 
             1             31 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2657 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-2659     TCGA-44-2661     TCGA-44-2662     TCGA-44-2665 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-2666     TCGA-44-2668     TCGA-44-3398     TCGA-44-3918 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-55-1592     TCGA-55-1594 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-55-1595     TCGA-55-1596     TCGA-64-1676     TCGA-64-1677 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-64-1678     TCGA-64-1680     TCGA-67-3770     TCGA-67-3771 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
D114V2, multiclass
[1] "Remove cluster labels:" "CD5L MUTATED"          
clus
  CD5L MUTATED CD5L WILD-TYPE 
             1             31 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2657 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-2659     TCGA-44-2661     TCGA-44-2662     TCGA-44-2665 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-2666     TCGA-44-2668     TCGA-44-3398     TCGA-44-3918 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-55-1592     TCGA-55-1594 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-55-1595     TCGA-55-1596     TCGA-64-1676     TCGA-64-1677 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-64-1678     TCGA-64-1680     TCGA-67-3770     TCGA-67-3771 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
D114V3, multiclass
        clus
vv       CD5L MUTATED CD5L WILD-TYPE
  CLUS_1            6             64
  CLUS_2            5             63
  CLUS_3            1             33
D114V4, multiclass
        clus
vv       CD5L MUTATED CD5L WILD-TYPE
  CLUS_1            2             32
  CLUS_2            7             26
  CLUS_3            1             42
D114V5, multiclass
        clus
vv       CD5L MUTATED CD5L WILD-TYPE
  CLUS_1            8             65
  CLUS_2            0             23
  CLUS_3            3             36
D114V6, multiclass
        clus
vv       CD5L MUTATED CD5L WILD-TYPE
  CLUS_1            8             69
  CLUS_2            1             25
  CLUS_3            2             30
D114V7, multiclass
        clus
vv       CD5L MUTATED CD5L WILD-TYPE
  CLUS_1            2             47
  CLUS_2            6             63
  CLUS_3            4             49
D114V8, multiclass
        clus
vv       CD5L MUTATED CD5L WILD-TYPE
  CLUS_1            4             46
  CLUS_2            4             64
  CLUS_3            4             49
D114V9, multiclass
        clus
vv       CD5L MUTATED CD5L WILD-TYPE
  CLUS_1            4             55
  CLUS_2            6             74
  CLUS_3            2             27
D114V10, multiclass
        clus
vv       CD5L MUTATED CD5L WILD-TYPE
  CLUS_1            0             20
  CLUS_2            8             83
  CLUS_3            4             53
D114V11, multiclass
        clus
vv       CD5L MUTATED CD5L WILD-TYPE
  CLUS_1            4             42
  CLUS_2            3             32
  CLUS_3            2             22
D114V12, multiclass
        clus
vv       CD5L MUTATED CD5L WILD-TYPE
  CLUS_1            0             11
  CLUS_2            4             42
  CLUS_3            5             43

Clustering(115) Variable = ANKRD56 MUTATION ANALYSIS
D115V1, multiclass
[1] "Remove cluster labels:" "ANKRD56 MUTATED"       
clus
  ANKRD56 MUTATED ANKRD56 WILD-TYPE 
                1                31 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2656 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3398 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-55-1592 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-55-1594        TCGA-55-1596        TCGA-64-1676        TCGA-64-1677 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1680        TCGA-67-3770        TCGA-67-3771 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
D115V2, multiclass
[1] "Remove cluster labels:" "ANKRD56 MUTATED"       
clus
  ANKRD56 MUTATED ANKRD56 WILD-TYPE 
                1                31 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2656 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3398 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-55-1592 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-55-1594        TCGA-55-1596        TCGA-64-1676        TCGA-64-1677 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1680        TCGA-67-3770        TCGA-67-3771 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" "ANKRD56 WILD-TYPE" 
D115V3, multiclass
        clus
vv       ANKRD56 MUTATED ANKRD56 WILD-TYPE
  CLUS_1               4                66
  CLUS_2               6                62
  CLUS_3               1                33
D115V4, multiclass
        clus
vv       ANKRD56 MUTATED ANKRD56 WILD-TYPE
  CLUS_1               3                31
  CLUS_2               2                31
  CLUS_3               3                40
D115V5, multiclass
        clus
vv       ANKRD56 MUTATED ANKRD56 WILD-TYPE
  CLUS_1               4                69
  CLUS_2               1                22
  CLUS_3               1                38
D115V6, multiclass
        clus
vv       ANKRD56 MUTATED ANKRD56 WILD-TYPE
  CLUS_1               3                74
  CLUS_2               2                24
  CLUS_3               1                31
D115V7, multiclass
        clus
vv       ANKRD56 MUTATED ANKRD56 WILD-TYPE
  CLUS_1               2                47
  CLUS_2               4                65
  CLUS_3               5                48
D115V8, multiclass
        clus
vv       ANKRD56 MUTATED ANKRD56 WILD-TYPE
  CLUS_1               2                48
  CLUS_2               3                65
  CLUS_3               6                47
D115V9, multiclass
        clus
vv       ANKRD56 MUTATED ANKRD56 WILD-TYPE
  CLUS_1               1                58
  CLUS_2               8                72
  CLUS_3               2                27
D115V10, multiclass
        clus
vv       ANKRD56 MUTATED ANKRD56 WILD-TYPE
  CLUS_1               0                20
  CLUS_2               9                82
  CLUS_3               2                55
D115V11, multiclass
        clus
vv       ANKRD56 MUTATED ANKRD56 WILD-TYPE
  CLUS_1               3                43
  CLUS_2               3                32
  CLUS_3               2                22
D115V12, multiclass
        clus
vv       ANKRD56 MUTATED ANKRD56 WILD-TYPE
  CLUS_1               1                10
  CLUS_2               4                42
  CLUS_3               3                45

Clustering(116) Variable = HOXA5 MUTATION ANALYSIS
D116V1, multiclass
[1] "Remove cluster labels:" "HOXA5 MUTATED"         
clus
  HOXA5 MUTATED HOXA5 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2666      TCGA-44-2668      TCGA-44-3398 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-3918      TCGA-44-3919      TCGA-44-4112      TCGA-55-1592 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1595      TCGA-55-1596      TCGA-64-1677 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
D116V2, multiclass
[1] "Remove cluster labels:" "HOXA5 MUTATED"         
clus
  HOXA5 MUTATED HOXA5 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2666      TCGA-44-2668      TCGA-44-3398 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-44-3918      TCGA-44-3919      TCGA-44-4112      TCGA-55-1592 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1595      TCGA-55-1596      TCGA-64-1677 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" "HOXA5 WILD-TYPE" 
D116V3, multiclass
        clus
vv       HOXA5 MUTATED HOXA5 WILD-TYPE
  CLUS_1             3              67
  CLUS_2             1              67
  CLUS_3             2              32
D116V4, multiclass
        clus
vv       HOXA5 MUTATED HOXA5 WILD-TYPE
  CLUS_1             2              32
  CLUS_2             1              32
  CLUS_3             0              43
D116V5, multiclass
        clus
vv       HOXA5 MUTATED HOXA5 WILD-TYPE
  CLUS_1             3              70
  CLUS_2             0              23
  CLUS_3             2              37
D116V6, multiclass
        clus
vv       HOXA5 MUTATED HOXA5 WILD-TYPE
  CLUS_1             2              75
  CLUS_2             0              26
  CLUS_3             3              29
D116V7, multiclass
        clus
vv       HOXA5 MUTATED HOXA5 WILD-TYPE
  CLUS_1             0              49
  CLUS_2             3              66
  CLUS_3             2              51
D116V8, multiclass
        clus
vv       HOXA5 MUTATED HOXA5 WILD-TYPE
  CLUS_1             3              47
  CLUS_2             0              68
  CLUS_3             2              51
D116V9, multiclass
        clus
vv       HOXA5 MUTATED HOXA5 WILD-TYPE
  CLUS_1             0              59
  CLUS_2             2              78
  CLUS_3             4              25
D116V10, multiclass
        clus
vv       HOXA5 MUTATED HOXA5 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             6              85
  CLUS_3             0              57
D116V11, multiclass
        clus
vv       HOXA5 MUTATED HOXA5 WILD-TYPE
  CLUS_1             0              46
  CLUS_2             1              34
  CLUS_3             2              22
D116V12, multiclass
        clus
vv       HOXA5 MUTATED HOXA5 WILD-TYPE
  CLUS_1             1              10
  CLUS_2             2              44
  CLUS_3             0              48

Clustering(117) Variable = FERD3L MUTATION ANALYSIS
D117V1, multiclass
[1] "Remove cluster labels:" "FERD3L MUTATED"        
clus
  FERD3L MUTATED FERD3L WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-3918       TCGA-44-3919       TCGA-44-4112       TCGA-55-1592 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-55-1594       TCGA-55-1595       TCGA-55-1596       TCGA-64-1677 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
D117V2, multiclass
[1] "Remove cluster labels:" "FERD3L MUTATED"        
clus
  FERD3L MUTATED FERD3L WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-44-3918       TCGA-44-3919       TCGA-44-4112       TCGA-55-1592 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-55-1594       TCGA-55-1595       TCGA-55-1596       TCGA-64-1677 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"FERD3L WILD-TYPE" "FERD3L WILD-TYPE" "FERD3L WILD-TYPE" 
D117V3, multiclass
        clus
vv       FERD3L MUTATED FERD3L WILD-TYPE
  CLUS_1              3               67
  CLUS_2              3               65
  CLUS_3              1               33
D117V4, multiclass
        clus
vv       FERD3L MUTATED FERD3L WILD-TYPE
  CLUS_1              1               33
  CLUS_2              1               32
  CLUS_3              3               40
D117V5, multiclass
        clus
vv       FERD3L MUTATED FERD3L WILD-TYPE
  CLUS_1              4               69
  CLUS_2              1               22
  CLUS_3              1               38
D117V6, multiclass
        clus
vv       FERD3L MUTATED FERD3L WILD-TYPE
  CLUS_1              5               72
  CLUS_2              1               25
  CLUS_3              0               32
D117V7, multiclass
        clus
vv       FERD3L MUTATED FERD3L WILD-TYPE
  CLUS_1              2               47
  CLUS_2              4               65
  CLUS_3              1               52
D117V8, multiclass
        clus
vv       FERD3L MUTATED FERD3L WILD-TYPE
  CLUS_1              2               48
  CLUS_2              3               65
  CLUS_3              2               51
D117V9, multiclass
        clus
vv       FERD3L MUTATED FERD3L WILD-TYPE
  CLUS_1              3               56
  CLUS_2              1               79
  CLUS_3              3               26
D117V10, multiclass
        clus
vv       FERD3L MUTATED FERD3L WILD-TYPE
  CLUS_1              2               18
  CLUS_2              4               87
  CLUS_3              1               56
D117V11, multiclass
        clus
vv       FERD3L MUTATED FERD3L WILD-TYPE
  CLUS_1              2               44
  CLUS_2              1               34
  CLUS_3              2               22
D117V12, multiclass
        clus
vv       FERD3L MUTATED FERD3L WILD-TYPE
  CLUS_1              0               11
  CLUS_2              2               44
  CLUS_3              3               45

Clustering(118) Variable = PLA2G4E MUTATION ANALYSIS
D118V1, multiclass
[1] "Remove cluster labels:" "PLA2G4E MUTATED"       
clus
  PLA2G4E MUTATED PLA2G4E WILD-TYPE 
                1                31 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2656 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3398        TCGA-44-3918 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-55-1592        TCGA-55-1594 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-64-1676        TCGA-64-1677 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1680        TCGA-67-3770        TCGA-67-3771 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
D118V2, multiclass
[1] "Remove cluster labels:" "PLA2G4E MUTATED"       
clus
  PLA2G4E MUTATED PLA2G4E WILD-TYPE 
                1                31 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2656 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3398        TCGA-44-3918 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-55-1592        TCGA-55-1594 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-64-1676        TCGA-64-1677 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1680        TCGA-67-3770        TCGA-67-3771 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
D118V3, multiclass
        clus
vv       PLA2G4E MUTATED PLA2G4E WILD-TYPE
  CLUS_1               3                67
  CLUS_2               1                67
  CLUS_3               0                34
D118V4, multiclass
[1] "Remove cluster labels:" "PLA2G4E MUTATED"       
clus
  PLA2G4E MUTATED PLA2G4E WILD-TYPE 
                2               108 
       TCGA-05-4384        TCGA-05-4390        TCGA-05-4396        TCGA-05-4405 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-4410        TCGA-05-4415        TCGA-05-4417        TCGA-05-4424 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-4425        TCGA-05-4427        TCGA-05-4433        TCGA-05-5423 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-5425        TCGA-05-5428        TCGA-05-5429        TCGA-05-5715 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-35-5375        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-2656        TCGA-44-2665        TCGA-44-2666        TCGA-44-2668 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-3918        TCGA-44-4112        TCGA-44-5643        TCGA-44-5645 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-6144        TCGA-44-6145        TCGA-44-6146        TCGA-44-6147 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-6148        TCGA-44-6774        TCGA-44-6775        TCGA-44-6776 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-6777        TCGA-44-6778        TCGA-44-6779        TCGA-49-4487 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-49-4488        TCGA-49-4490        TCGA-49-4512        TCGA-49-4514 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-49-6767        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-6595        TCGA-50-6597        TCGA-55-5899        TCGA-55-6543 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-64-5774        TCGA-64-5775 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-67-4679        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4676        TCGA-75-5122 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-75-5125        TCGA-75-5126        TCGA-75-5146        TCGA-75-5147 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-75-6203        TCGA-75-6205        TCGA-75-6207        TCGA-75-6211 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-75-6212        TCGA-80-5611        TCGA-86-6562        TCGA-91-6828 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
D118V5, multiclass
        clus
vv       PLA2G4E MUTATED PLA2G4E WILD-TYPE
  CLUS_1               1                72
  CLUS_2               1                22
  CLUS_3               1                38
D118V6, multiclass
        clus
vv       PLA2G4E MUTATED PLA2G4E WILD-TYPE
  CLUS_1               1                76
  CLUS_2               1                25
  CLUS_3               1                31
D118V7, multiclass
        clus
vv       PLA2G4E MUTATED PLA2G4E WILD-TYPE
  CLUS_1               1                48
  CLUS_2               2                67
  CLUS_3               1                52
D118V8, multiclass
        clus
vv       PLA2G4E MUTATED PLA2G4E WILD-TYPE
  CLUS_1               1                49
  CLUS_2               2                66
  CLUS_3               1                52
D118V9, multiclass
        clus
vv       PLA2G4E MUTATED PLA2G4E WILD-TYPE
  CLUS_1               0                59
  CLUS_2               3                77
  CLUS_3               1                28
D118V10, multiclass
        clus
vv       PLA2G4E MUTATED PLA2G4E WILD-TYPE
  CLUS_1               0                20
  CLUS_2               4                87
  CLUS_3               0                57
D118V11, multiclass
[1] "Remove cluster labels:" "PLA2G4E MUTATED"       
clus
  PLA2G4E MUTATED PLA2G4E WILD-TYPE 
                2               103 
       TCGA-05-4384        TCGA-05-4390        TCGA-05-4396        TCGA-05-4405 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-4410        TCGA-05-4415        TCGA-05-4417        TCGA-05-4424 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-4425        TCGA-05-4427        TCGA-05-4433        TCGA-05-5423 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-5425        TCGA-05-5428        TCGA-05-5429        TCGA-05-5715 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-35-5375        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-6779        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6767        TCGA-50-5044 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6595        TCGA-50-6597 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-4679        TCGA-67-6215 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-73-4676        TCGA-75-5122        TCGA-75-5125        TCGA-75-5126 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-75-5146        TCGA-75-5147        TCGA-75-6203        TCGA-75-6205 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-75-6206        TCGA-75-6207        TCGA-75-6211        TCGA-75-6212 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-80-5611        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
D118V12, multiclass
[1] "Remove cluster labels:" "PLA2G4E MUTATED"       
clus
  PLA2G4E MUTATED PLA2G4E WILD-TYPE 
                2               103 
       TCGA-05-4384        TCGA-05-4390        TCGA-05-4396        TCGA-05-4405 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-4410        TCGA-05-4415        TCGA-05-4417        TCGA-05-4424 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-4425        TCGA-05-4427        TCGA-05-4433        TCGA-05-5423 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-05-5425        TCGA-05-5428        TCGA-05-5429        TCGA-05-5715 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-35-5375        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-44-6779        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6767        TCGA-50-5044 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6595        TCGA-50-6597 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-4679        TCGA-67-6215 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-73-4676        TCGA-75-5122        TCGA-75-5125        TCGA-75-5126 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-75-5146        TCGA-75-5147        TCGA-75-6203        TCGA-75-6205 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-75-6206        TCGA-75-6207        TCGA-75-6211        TCGA-75-6212 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-80-5611        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" "PLA2G4E WILD-TYPE" 

Clustering(119) Variable = RP1L1 MUTATION ANALYSIS
D119V1, multiclass
        clus
vv       RP1L1 MUTATED RP1L1 WILD-TYPE
  CLUS_1             0               5
  CLUS_2             2               7
  CLUS_3             1              11
  CLUS_4             0               6
D119V2, multiclass
        clus
vv       RP1L1 MUTATED RP1L1 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             1              12
  CLUS_3             2              10
D119V3, multiclass
        clus
vv       RP1L1 MUTATED RP1L1 WILD-TYPE
  CLUS_1            10              60
  CLUS_2            11              57
  CLUS_3            11              23
D119V4, multiclass
        clus
vv       RP1L1 MUTATED RP1L1 WILD-TYPE
  CLUS_1             6              28
  CLUS_2             9              24
  CLUS_3             8              35
D119V5, multiclass
        clus
vv       RP1L1 MUTATED RP1L1 WILD-TYPE
  CLUS_1            14              59
  CLUS_2             2              21
  CLUS_3             8              31
D119V6, multiclass
        clus
vv       RP1L1 MUTATED RP1L1 WILD-TYPE
  CLUS_1            17              60
  CLUS_2             3              23
  CLUS_3             4              28
D119V7, multiclass
        clus
vv       RP1L1 MUTATED RP1L1 WILD-TYPE
  CLUS_1             4              45
  CLUS_2            17              52
  CLUS_3            11              42
D119V8, multiclass
        clus
vv       RP1L1 MUTATED RP1L1 WILD-TYPE
  CLUS_1            11              39
  CLUS_2             9              59
  CLUS_3            12              41
D119V9, multiclass
        clus
vv       RP1L1 MUTATED RP1L1 WILD-TYPE
  CLUS_1             9              50
  CLUS_2            16              64
  CLUS_3             5              24
D119V10, multiclass
        clus
vv       RP1L1 MUTATED RP1L1 WILD-TYPE
  CLUS_1             2              18
  CLUS_2            20              71
  CLUS_3             8              49
D119V11, multiclass
        clus
vv       RP1L1 MUTATED RP1L1 WILD-TYPE
  CLUS_1            12              34
  CLUS_2             7              28
  CLUS_3             4              20
D119V12, multiclass
        clus
vv       RP1L1 MUTATED RP1L1 WILD-TYPE
  CLUS_1             0              11
  CLUS_2            12              34
  CLUS_3            11              37

Clustering(120) Variable = SIRPB1 MUTATION ANALYSIS
D120V1, multiclass
D120V2, multiclass
D120V3, multiclass
        clus
vv       SIRPB1 MUTATED SIRPB1 WILD-TYPE
  CLUS_1              3               67
  CLUS_2              2               66
  CLUS_3              1               33
D120V4, multiclass
        clus
vv       SIRPB1 MUTATED SIRPB1 WILD-TYPE
  CLUS_1              0               34
  CLUS_2              3               30
  CLUS_3              2               41
D120V5, multiclass
        clus
vv       SIRPB1 MUTATED SIRPB1 WILD-TYPE
  CLUS_1              3               70
  CLUS_2              1               22
  CLUS_3              2               37
D120V6, multiclass
        clus
vv       SIRPB1 MUTATED SIRPB1 WILD-TYPE
  CLUS_1              3               74
  CLUS_2              2               24
  CLUS_3              1               31
D120V7, multiclass
        clus
vv       SIRPB1 MUTATED SIRPB1 WILD-TYPE
  CLUS_1              1               48
  CLUS_2              2               67
  CLUS_3              3               50
D120V8, multiclass
        clus
vv       SIRPB1 MUTATED SIRPB1 WILD-TYPE
  CLUS_1              2               48
  CLUS_2              2               66
  CLUS_3              2               51
D120V9, multiclass
        clus
vv       SIRPB1 MUTATED SIRPB1 WILD-TYPE
  CLUS_1              0               59
  CLUS_2              5               75
  CLUS_3              1               28
D120V10, multiclass
        clus
vv       SIRPB1 MUTATED SIRPB1 WILD-TYPE
  CLUS_1              0               20
  CLUS_2              5               86
  CLUS_3              1               56
D120V11, multiclass
        clus
vv       SIRPB1 MUTATED SIRPB1 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              2               33
  CLUS_3              0               24
D120V12, multiclass
        clus
vv       SIRPB1 MUTATED SIRPB1 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              3               43
  CLUS_3              2               46

Clustering(121) Variable = GTF2I MUTATION ANALYSIS
D121V1, multiclass
[1] "Remove cluster labels:" "GTF2I MUTATED"         
clus
  GTF2I MUTATED GTF2I WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2665 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
D121V2, multiclass
[1] "Remove cluster labels:" "GTF2I MUTATED"         
clus
  GTF2I MUTATED GTF2I WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2665 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
D121V3, multiclass
        clus
vv       GTF2I MUTATED GTF2I WILD-TYPE
  CLUS_1             1              69
  CLUS_2             2              66
  CLUS_3             0              34
D121V4, multiclass
[1] "Remove cluster labels:" "GTF2I MUTATED"         
clus
  GTF2I MUTATED GTF2I WILD-TYPE 
              2             108 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4405      TCGA-05-4410 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4424      TCGA-05-4425 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4433      TCGA-05-5420      TCGA-05-5423 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-5425      TCGA-05-5428      TCGA-05-5429      TCGA-05-5715 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-35-5375      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-3918      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4487 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4512      TCGA-49-4514 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-6742      TCGA-49-6743      TCGA-49-6744      TCGA-49-6745 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-6767      TCGA-50-5044      TCGA-50-5045      TCGA-50-5049 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5051      TCGA-50-5055      TCGA-50-5066      TCGA-50-5068 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5072      TCGA-50-5930      TCGA-50-5931      TCGA-50-5932 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5933      TCGA-50-5935      TCGA-50-5936      TCGA-50-5939 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5941      TCGA-50-5942      TCGA-50-5944      TCGA-50-5946 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-6590      TCGA-50-6591      TCGA-50-6592      TCGA-50-6593 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-6594      TCGA-50-6595      TCGA-50-6597      TCGA-55-5899 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-55-6543      TCGA-55-6642      TCGA-55-6712      TCGA-64-5774 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-5775      TCGA-64-5778      TCGA-64-5779      TCGA-64-5781 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-5815      TCGA-67-4679      TCGA-67-6215      TCGA-67-6216 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-67-6217      TCGA-71-6725      TCGA-73-4658      TCGA-73-4676 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-75-5122      TCGA-75-5125      TCGA-75-5126      TCGA-75-5146 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-75-5147      TCGA-75-6203      TCGA-75-6205      TCGA-75-6207 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-75-6211      TCGA-80-5611      TCGA-86-6562      TCGA-91-6828 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-91-6829      TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
D121V5, multiclass
[1] "Remove cluster labels:" "GTF2I MUTATED"         
clus
  GTF2I MUTATED GTF2I WILD-TYPE 
              2             133 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-05-4384 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4397      TCGA-05-4398      TCGA-05-4402      TCGA-05-4405 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4410      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4426      TCGA-05-4427      TCGA-05-4430 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4629      TCGA-38-6178      TCGA-44-2656 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2661      TCGA-44-2665      TCGA-44-2668 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4494      TCGA-49-4501      TCGA-49-4505 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4506      TCGA-49-4507      TCGA-49-4510      TCGA-49-4512 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4514      TCGA-49-6742      TCGA-49-6743      TCGA-49-6744 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-6745      TCGA-49-6767      TCGA-50-5044      TCGA-50-5045 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5066      TCGA-50-5068 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5072      TCGA-50-5930      TCGA-50-5931      TCGA-50-5932 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5933      TCGA-50-5936      TCGA-50-5939      TCGA-50-5941 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5942      TCGA-50-5944      TCGA-50-5946      TCGA-50-6590 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-6591      TCGA-50-6592      TCGA-50-6593      TCGA-50-6594 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-6595      TCGA-50-6597      TCGA-55-1592      TCGA-55-1594 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6712 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5778      TCGA-64-5779      TCGA-64-5781 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-5815      TCGA-67-3771      TCGA-67-6215      TCGA-67-6216 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-67-6217      TCGA-71-6725      TCGA-73-4658      TCGA-73-4659 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-75-5122 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-75-5125      TCGA-75-6203      TCGA-75-6205      TCGA-75-6206 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-75-6207      TCGA-75-6211      TCGA-80-5611      TCGA-86-6562 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-91-6836 
"GTF2I WILD-TYPE" 
D121V6, multiclass
[1] "Remove cluster labels:" "GTF2I MUTATED"         
clus
  GTF2I MUTATED GTF2I WILD-TYPE 
              2             133 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-05-4384 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4397      TCGA-05-4398      TCGA-05-4402      TCGA-05-4405 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4410      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4426      TCGA-05-4427      TCGA-05-4430 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4629      TCGA-38-6178      TCGA-44-2656 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2661      TCGA-44-2665      TCGA-44-2668 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-3396      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-4112      TCGA-44-5643      TCGA-44-5645      TCGA-44-6144 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6145      TCGA-44-6146      TCGA-44-6147      TCGA-44-6148 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6774      TCGA-44-6775      TCGA-44-6776      TCGA-44-6777 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6778      TCGA-44-6779      TCGA-49-4486      TCGA-49-4487 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4494      TCGA-49-4501      TCGA-49-4505 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4506      TCGA-49-4507      TCGA-49-4510      TCGA-49-4512 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4514      TCGA-49-6742      TCGA-49-6743      TCGA-49-6744 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-6745      TCGA-49-6767      TCGA-50-5044      TCGA-50-5045 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5049      TCGA-50-5051      TCGA-50-5066      TCGA-50-5068 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5072      TCGA-50-5930      TCGA-50-5931      TCGA-50-5932 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5933      TCGA-50-5936      TCGA-50-5939      TCGA-50-5941 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5942      TCGA-50-5944      TCGA-50-5946      TCGA-50-6590 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-6591      TCGA-50-6592      TCGA-50-6593      TCGA-50-6594 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-6595      TCGA-50-6597      TCGA-55-1592      TCGA-55-1594 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-55-1596      TCGA-55-5899      TCGA-55-6543      TCGA-55-6712 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-1676      TCGA-64-1677      TCGA-64-1678      TCGA-64-1680 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-5774      TCGA-64-5778      TCGA-64-5779      TCGA-64-5781 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-5815      TCGA-67-3771      TCGA-67-6215      TCGA-67-6216 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-67-6217      TCGA-71-6725      TCGA-73-4658      TCGA-73-4659 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-73-4670      TCGA-73-4675      TCGA-73-4676      TCGA-75-5122 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-75-5125      TCGA-75-6203      TCGA-75-6205      TCGA-75-6206 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-75-6207      TCGA-75-6211      TCGA-80-5611      TCGA-86-6562 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-91-6836 
"GTF2I WILD-TYPE" 
D121V7, multiclass
        clus
vv       GTF2I MUTATED GTF2I WILD-TYPE
  CLUS_1             1              48
  CLUS_2             1              68
  CLUS_3             1              52
D121V8, multiclass
        clus
vv       GTF2I MUTATED GTF2I WILD-TYPE
  CLUS_1             1              49
  CLUS_2             2              66
  CLUS_3             0              53
D121V9, multiclass
        clus
vv       GTF2I MUTATED GTF2I WILD-TYPE
  CLUS_1             1              58
  CLUS_2             2              78
  CLUS_3             0              29
D121V10, multiclass
        clus
vv       GTF2I MUTATED GTF2I WILD-TYPE
  CLUS_1             1              19
  CLUS_2             2              89
  CLUS_3             0              57
D121V11, multiclass
[1] "Remove cluster labels:" "GTF2I MUTATED"         
clus
  GTF2I MUTATED GTF2I WILD-TYPE 
              2             103 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4405      TCGA-05-4410 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4424      TCGA-05-4425 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4433      TCGA-05-5420      TCGA-05-5423 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-5425      TCGA-05-5428      TCGA-05-5429      TCGA-05-5715 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-35-5375      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-5643      TCGA-44-5645      TCGA-44-6144      TCGA-44-6145 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6146      TCGA-44-6147      TCGA-44-6148      TCGA-44-6774 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6775      TCGA-44-6776      TCGA-44-6777      TCGA-44-6778 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6779      TCGA-49-4487      TCGA-49-4488      TCGA-49-4490 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-49-6767      TCGA-50-5044 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-6597      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-55-6712      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-4679 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4676      TCGA-75-5122      TCGA-75-5125 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-75-5126      TCGA-75-5146      TCGA-75-5147      TCGA-75-6203 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-75-6205      TCGA-75-6206      TCGA-75-6207      TCGA-75-6211 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-80-5611      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
D121V12, multiclass
[1] "Remove cluster labels:" "GTF2I MUTATED"         
clus
  GTF2I MUTATED GTF2I WILD-TYPE 
              2             103 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4405      TCGA-05-4410 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4424      TCGA-05-4425 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4433      TCGA-05-5420      TCGA-05-5423 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-05-5425      TCGA-05-5428      TCGA-05-5429      TCGA-05-5715 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-35-5375      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-5643      TCGA-44-5645      TCGA-44-6144      TCGA-44-6145 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6146      TCGA-44-6147      TCGA-44-6148      TCGA-44-6774 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6775      TCGA-44-6776      TCGA-44-6777      TCGA-44-6778 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-44-6779      TCGA-49-4487      TCGA-49-4488      TCGA-49-4490 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-49-6767      TCGA-50-5044 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-50-6597      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-55-6712      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-4679 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4676      TCGA-75-5122      TCGA-75-5125 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-75-5126      TCGA-75-5146      TCGA-75-5147      TCGA-75-6203 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-75-6205      TCGA-75-6206      TCGA-75-6207      TCGA-75-6211 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-80-5611      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"GTF2I WILD-TYPE" "GTF2I WILD-TYPE" "GTF2I WILD-TYPE" 

Clustering(122) Variable = COL3A1 MUTATION ANALYSIS
D122V1, multiclass
        clus
vv       COL3A1 MUTATED COL3A1 WILD-TYPE
  CLUS_1              0                5
  CLUS_2              2                7
  CLUS_3              3                9
  CLUS_4              1                5
D122V2, multiclass
        clus
vv       COL3A1 MUTATED COL3A1 WILD-TYPE
  CLUS_1              1                6
  CLUS_2              4                9
  CLUS_3              1               11
D122V3, multiclass
        clus
vv       COL3A1 MUTATED COL3A1 WILD-TYPE
  CLUS_1             11               59
  CLUS_2              8               60
  CLUS_3              3               31
D122V4, multiclass
        clus
vv       COL3A1 MUTATED COL3A1 WILD-TYPE
  CLUS_1              1               33
  CLUS_2              6               27
  CLUS_3              7               36
D122V5, multiclass
        clus
vv       COL3A1 MUTATED COL3A1 WILD-TYPE
  CLUS_1              9               64
  CLUS_2              2               21
  CLUS_3              7               32
D122V6, multiclass
        clus
vv       COL3A1 MUTATED COL3A1 WILD-TYPE
  CLUS_1             11               66
  CLUS_2              2               24
  CLUS_3              5               27
D122V7, multiclass
        clus
vv       COL3A1 MUTATED COL3A1 WILD-TYPE
  CLUS_1              3               46
  CLUS_2             12               57
  CLUS_3              7               46
D122V8, multiclass
        clus
vv       COL3A1 MUTATED COL3A1 WILD-TYPE
  CLUS_1              8               42
  CLUS_2              6               62
  CLUS_3              8               45
D122V9, multiclass
        clus
vv       COL3A1 MUTATED COL3A1 WILD-TYPE
  CLUS_1              5               54
  CLUS_2             12               68
  CLUS_3              5               24
D122V10, multiclass
        clus
vv       COL3A1 MUTATED COL3A1 WILD-TYPE
  CLUS_1              2               18
  CLUS_2             16               75
  CLUS_3              4               53
D122V11, multiclass
        clus
vv       COL3A1 MUTATED COL3A1 WILD-TYPE
  CLUS_1              5               41
  CLUS_2              4               31
  CLUS_3              3               21
D122V12, multiclass
        clus
vv       COL3A1 MUTATED COL3A1 WILD-TYPE
  CLUS_1              2                9
  CLUS_2              6               40
  CLUS_3              4               44

Clustering(123) Variable = MUC16 MUTATION ANALYSIS
D123V1, multiclass
        clus
vv       MUC16 MUTATED MUC16 WILD-TYPE
  CLUS_1             3               2
  CLUS_2             8               1
  CLUS_3             5               7
  CLUS_4             3               3
D123V2, multiclass
        clus
vv       MUC16 MUTATED MUC16 WILD-TYPE
  CLUS_1             4               3
  CLUS_2             6               7
  CLUS_3             9               3
D123V3, multiclass
        clus
vv       MUC16 MUTATED MUC16 WILD-TYPE
  CLUS_1            36              34
  CLUS_2            28              40
  CLUS_3            15              19
D123V4, multiclass
        clus
vv       MUC16 MUTATED MUC16 WILD-TYPE
  CLUS_1            12              22
  CLUS_2            19              14
  CLUS_3            17              26
D123V5, multiclass
        clus
vv       MUC16 MUTATED MUC16 WILD-TYPE
  CLUS_1            34              39
  CLUS_2             6              17
  CLUS_3            22              17
D123V6, multiclass
        clus
vv       MUC16 MUTATED MUC16 WILD-TYPE
  CLUS_1            35              42
  CLUS_2             8              18
  CLUS_3            19              13
D123V7, multiclass
        clus
vv       MUC16 MUTATED MUC16 WILD-TYPE
  CLUS_1            16              33
  CLUS_2            39              30
  CLUS_3            23              30
D123V8, multiclass
        clus
vv       MUC16 MUTATED MUC16 WILD-TYPE
  CLUS_1            28              22
  CLUS_2            25              43
  CLUS_3            25              28
D123V9, multiclass
        clus
vv       MUC16 MUTATED MUC16 WILD-TYPE
  CLUS_1            26              33
  CLUS_2            40              40
  CLUS_3            11              18
D123V10, multiclass
        clus
vv       MUC16 MUTATED MUC16 WILD-TYPE
  CLUS_1            10              10
  CLUS_2            45              46
  CLUS_3            22              35
D123V11, multiclass
        clus
vv       MUC16 MUTATED MUC16 WILD-TYPE
  CLUS_1            19              27
  CLUS_2            15              20
  CLUS_3             9              15
D123V12, multiclass
        clus
vv       MUC16 MUTATED MUC16 WILD-TYPE
  CLUS_1             4               7
  CLUS_2            21              25
  CLUS_3            18              30

Clustering(124) Variable = VPS13C MUTATION ANALYSIS
D124V1, multiclass
        clus
vv       VPS13C MUTATED VPS13C WILD-TYPE
  CLUS_1              1                4
  CLUS_2              2                7
  CLUS_3              0               12
  CLUS_4              3                3
D124V2, multiclass
        clus
vv       VPS13C MUTATED VPS13C WILD-TYPE
  CLUS_1              3                4
  CLUS_2              1               12
  CLUS_3              2               10
D124V3, multiclass
        clus
vv       VPS13C MUTATED VPS13C WILD-TYPE
  CLUS_1              9               61
  CLUS_2              8               60
  CLUS_3              2               32
D124V4, multiclass
        clus
vv       VPS13C MUTATED VPS13C WILD-TYPE
  CLUS_1              1               33
  CLUS_2              4               29
  CLUS_3              5               38
D124V5, multiclass
        clus
vv       VPS13C MUTATED VPS13C WILD-TYPE
  CLUS_1             11               62
  CLUS_2              0               23
  CLUS_3              3               36
D124V6, multiclass
        clus
vv       VPS13C MUTATED VPS13C WILD-TYPE
  CLUS_1             12               65
  CLUS_2              1               25
  CLUS_3              1               31
D124V7, multiclass
        clus
vv       VPS13C MUTATED VPS13C WILD-TYPE
  CLUS_1              5               44
  CLUS_2              7               62
  CLUS_3              7               46
D124V8, multiclass
        clus
vv       VPS13C MUTATED VPS13C WILD-TYPE
  CLUS_1              6               44
  CLUS_2              6               62
  CLUS_3              7               46
D124V9, multiclass
        clus
vv       VPS13C MUTATED VPS13C WILD-TYPE
  CLUS_1              4               55
  CLUS_2             12               68
  CLUS_3              2               27
D124V10, multiclass
        clus
vv       VPS13C MUTATED VPS13C WILD-TYPE
  CLUS_1              1               19
  CLUS_2             13               78
  CLUS_3              4               53
D124V11, multiclass
        clus
vv       VPS13C MUTATED VPS13C WILD-TYPE
  CLUS_1              5               41
  CLUS_2              3               32
  CLUS_3              1               23
D124V12, multiclass
        clus
vv       VPS13C MUTATED VPS13C WILD-TYPE
  CLUS_1              0               11
  CLUS_2              4               42
  CLUS_3              5               43

Clustering(125) Variable = HOXA3 MUTATION ANALYSIS
D125V1, multiclass
D125V2, multiclass
D125V3, multiclass
        clus
vv       HOXA3 MUTATED HOXA3 WILD-TYPE
  CLUS_1             4              66
  CLUS_2             2              66
  CLUS_3             0              34
D125V4, multiclass
        clus
vv       HOXA3 MUTATED HOXA3 WILD-TYPE
  CLUS_1             1              33
  CLUS_2             3              30
  CLUS_3             1              42
D125V5, multiclass
        clus
vv       HOXA3 MUTATED HOXA3 WILD-TYPE
  CLUS_1             4              69
  CLUS_2             0              23
  CLUS_3             1              38
D125V6, multiclass
        clus
vv       HOXA3 MUTATED HOXA3 WILD-TYPE
  CLUS_1             3              74
  CLUS_2             1              25
  CLUS_3             1              31
D125V7, multiclass
        clus
vv       HOXA3 MUTATED HOXA3 WILD-TYPE
  CLUS_1             0              49
  CLUS_2             4              65
  CLUS_3             2              51
D125V8, multiclass
        clus
vv       HOXA3 MUTATED HOXA3 WILD-TYPE
  CLUS_1             3              47
  CLUS_2             2              66
  CLUS_3             1              52
D125V9, multiclass
        clus
vv       HOXA3 MUTATED HOXA3 WILD-TYPE
  CLUS_1             1              58
  CLUS_2             4              76
  CLUS_3             1              28
D125V10, multiclass
        clus
vv       HOXA3 MUTATED HOXA3 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             5              86
  CLUS_3             1              56
D125V11, multiclass
        clus
vv       HOXA3 MUTATED HOXA3 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             4              31
  CLUS_3             0              24
D125V12, multiclass
        clus
vv       HOXA3 MUTATED HOXA3 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             4              42
  CLUS_3             1              47

Clustering(126) Variable = TBX15 MUTATION ANALYSIS
D126V1, multiclass
[1] "Remove cluster labels:" "TBX15 MUTATED"         
clus
  TBX15 MUTATED TBX15 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
D126V2, multiclass
[1] "Remove cluster labels:" "TBX15 MUTATED"         
clus
  TBX15 MUTATED TBX15 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"TBX15 WILD-TYPE" "TBX15 WILD-TYPE" "TBX15 WILD-TYPE" 
D126V3, multiclass
        clus
vv       TBX15 MUTATED TBX15 WILD-TYPE
  CLUS_1             7              63
  CLUS_2             3              65
  CLUS_3             1              33
D126V4, multiclass
        clus
vv       TBX15 MUTATED TBX15 WILD-TYPE
  CLUS_1             2              32
  CLUS_2             4              29
  CLUS_3             1              42
D126V5, multiclass
        clus
vv       TBX15 MUTATED TBX15 WILD-TYPE
  CLUS_1             4              69
  CLUS_2             0              23
  CLUS_3             2              37
D126V6, multiclass
        clus
vv       TBX15 MUTATED TBX15 WILD-TYPE
  CLUS_1             4              73
  CLUS_2             1              25
  CLUS_3             1              31
D126V7, multiclass
        clus
vv       TBX15 MUTATED TBX15 WILD-TYPE
  CLUS_1             2              47
  CLUS_2             6              63
  CLUS_3             3              50
D126V8, multiclass
        clus
vv       TBX15 MUTATED TBX15 WILD-TYPE
  CLUS_1             4              46
  CLUS_2             3              65
  CLUS_3             4              49
D126V9, multiclass
        clus
vv       TBX15 MUTATED TBX15 WILD-TYPE
  CLUS_1             2              57
  CLUS_2             8              72
  CLUS_3             1              28
D126V10, multiclass
        clus
vv       TBX15 MUTATED TBX15 WILD-TYPE
  CLUS_1             0              20
  CLUS_2            10              81
  CLUS_3             1              56
D126V11, multiclass
        clus
vv       TBX15 MUTATED TBX15 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             3              32
  CLUS_3             1              23
D126V12, multiclass
        clus
vv       TBX15 MUTATED TBX15 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             5              41
  CLUS_3             1              47

Clustering(127) Variable = OR56A4 MUTATION ANALYSIS
D127V1, multiclass
[1] "Remove cluster labels:" "OR56A4 MUTATED"        
clus
  OR56A4 MUTATED OR56A4 WILD-TYPE 
               2               30 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-3918       TCGA-44-3919       TCGA-44-4112       TCGA-55-1594 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1677       TCGA-64-1678 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-64-1680       TCGA-67-3770       TCGA-67-3771       TCGA-67-3772 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
D127V2, multiclass
[1] "Remove cluster labels:" "OR56A4 MUTATED"        
clus
  OR56A4 MUTATED OR56A4 WILD-TYPE 
               2               30 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-3918       TCGA-44-3919       TCGA-44-4112       TCGA-55-1594 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1677       TCGA-64-1678 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-64-1680       TCGA-67-3770       TCGA-67-3771       TCGA-67-3772 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
D127V3, multiclass
        clus
vv       OR56A4 MUTATED OR56A4 WILD-TYPE
  CLUS_1              3               67
  CLUS_2              2               66
  CLUS_3              1               33
D127V4, multiclass
[1] "Remove cluster labels:" "OR56A4 MUTATED"        
clus
  OR56A4 MUTATED OR56A4 WILD-TYPE 
               2              108 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4396       TCGA-05-4405 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-05-4410       TCGA-05-4415       TCGA-05-4417       TCGA-05-4424 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-05-4425       TCGA-05-4427       TCGA-05-4433       TCGA-05-5420 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-05-5423       TCGA-05-5425       TCGA-05-5428       TCGA-05-5429 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-05-5715       TCGA-35-5375       TCGA-38-4631       TCGA-38-4632 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-38-6178       TCGA-44-2656       TCGA-44-2665       TCGA-44-2666 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3918       TCGA-44-4112       TCGA-44-5643 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-5645       TCGA-44-6144       TCGA-44-6145       TCGA-44-6146 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-6147       TCGA-44-6148       TCGA-44-6774       TCGA-44-6775 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-6776       TCGA-44-6777       TCGA-44-6779       TCGA-49-4487 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4512       TCGA-49-4514 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-49-6742       TCGA-49-6743       TCGA-49-6744       TCGA-49-6745 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-49-6767       TCGA-50-5044       TCGA-50-5045       TCGA-50-5049 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-50-5051       TCGA-50-5055       TCGA-50-5066       TCGA-50-5068 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-50-5072       TCGA-50-5930       TCGA-50-5931       TCGA-50-5932 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-50-5933       TCGA-50-5935       TCGA-50-5936       TCGA-50-5939 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-50-5941       TCGA-50-5942       TCGA-50-5944       TCGA-50-5946 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-50-6591       TCGA-50-6592       TCGA-50-6593       TCGA-50-6594 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-50-6595       TCGA-50-6597       TCGA-55-5899       TCGA-55-6543 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-55-6642       TCGA-55-6712       TCGA-64-5774       TCGA-64-5775 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-64-5778       TCGA-64-5779       TCGA-64-5781       TCGA-64-5815 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-67-4679       TCGA-67-6215       TCGA-67-6216       TCGA-67-6217 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-71-6725       TCGA-73-4658       TCGA-73-4676       TCGA-75-5122 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-75-5125       TCGA-75-5126       TCGA-75-5146       TCGA-75-5147 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-75-6203       TCGA-75-6205       TCGA-75-6207       TCGA-75-6211 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-75-6212       TCGA-80-5611       TCGA-86-6562       TCGA-91-6828 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-91-6829       TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
D127V5, multiclass
        clus
vv       OR56A4 MUTATED OR56A4 WILD-TYPE
  CLUS_1              3               70
  CLUS_2              0               23
  CLUS_3              1               38
D127V6, multiclass
        clus
vv       OR56A4 MUTATED OR56A4 WILD-TYPE
  CLUS_1              3               74
  CLUS_2              0               26
  CLUS_3              1               31
D127V7, multiclass
        clus
vv       OR56A4 MUTATED OR56A4 WILD-TYPE
  CLUS_1              1               48
  CLUS_2              3               66
  CLUS_3              2               51
D127V8, multiclass
        clus
vv       OR56A4 MUTATED OR56A4 WILD-TYPE
  CLUS_1              2               48
  CLUS_2              1               67
  CLUS_3              3               50
D127V9, multiclass
        clus
vv       OR56A4 MUTATED OR56A4 WILD-TYPE
  CLUS_1              1               58
  CLUS_2              3               77
  CLUS_3              2               27
D127V10, multiclass
        clus
vv       OR56A4 MUTATED OR56A4 WILD-TYPE
  CLUS_1              0               20
  CLUS_2              6               85
  CLUS_3              0               57
D127V11, multiclass
[1] "Remove cluster labels:" "OR56A4 MUTATED"        
clus
  OR56A4 MUTATED OR56A4 WILD-TYPE 
               2              103 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4396       TCGA-05-4405 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-05-4410       TCGA-05-4415       TCGA-05-4417       TCGA-05-4424 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-05-4425       TCGA-05-4427       TCGA-05-4433       TCGA-05-5420 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-05-5423       TCGA-05-5425       TCGA-05-5428       TCGA-05-5429 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-05-5715       TCGA-35-5375       TCGA-38-4631       TCGA-38-4632 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-38-6178       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-6779       TCGA-49-4487       TCGA-49-4488       TCGA-49-4490 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-49-6767       TCGA-50-5044 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6591       TCGA-50-6592 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-4679       TCGA-67-6215 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-73-4676       TCGA-75-5122       TCGA-75-5125       TCGA-75-5126 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-75-5146       TCGA-75-5147       TCGA-75-6203       TCGA-75-6205 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-75-6206       TCGA-75-6207       TCGA-75-6211       TCGA-75-6212 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-80-5611       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
D127V12, multiclass
[1] "Remove cluster labels:" "OR56A4 MUTATED"        
clus
  OR56A4 MUTATED OR56A4 WILD-TYPE 
               2              103 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4396       TCGA-05-4405 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-05-4410       TCGA-05-4415       TCGA-05-4417       TCGA-05-4424 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-05-4425       TCGA-05-4427       TCGA-05-4433       TCGA-05-5420 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-05-5423       TCGA-05-5425       TCGA-05-5428       TCGA-05-5429 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-05-5715       TCGA-35-5375       TCGA-38-4631       TCGA-38-4632 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-38-6178       TCGA-44-5643       TCGA-44-5645       TCGA-44-6144 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-6145       TCGA-44-6146       TCGA-44-6147       TCGA-44-6148 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-6774       TCGA-44-6775       TCGA-44-6776       TCGA-44-6777 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-44-6779       TCGA-49-4487       TCGA-49-4488       TCGA-49-4490 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-49-6767       TCGA-50-5044 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6591       TCGA-50-6592 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-50-6593       TCGA-50-6594       TCGA-50-6595       TCGA-50-6597 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-55-5899       TCGA-55-6543       TCGA-55-6642       TCGA-55-6712 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-64-5774       TCGA-64-5775       TCGA-64-5778       TCGA-64-5779 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-64-5781       TCGA-64-5815       TCGA-67-4679       TCGA-67-6215 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-67-6216       TCGA-67-6217       TCGA-71-6725       TCGA-73-4658 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-73-4676       TCGA-75-5122       TCGA-75-5125       TCGA-75-5126 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-75-5146       TCGA-75-5147       TCGA-75-6203       TCGA-75-6205 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-75-6206       TCGA-75-6207       TCGA-75-6211       TCGA-75-6212 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-80-5611       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" "OR56A4 WILD-TYPE" 

Clustering(128) Variable = HCK MUTATION ANALYSIS
D128V1, multiclass
[1] "Remove cluster labels:" "HCK MUTATED"           
clus
  HCK MUTATED HCK WILD-TYPE 
            2            30 
   TCGA-05-4244    TCGA-05-4249    TCGA-05-4250    TCGA-35-3615    TCGA-35-4122 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-35-4123    TCGA-44-2655    TCGA-44-2656    TCGA-44-2657    TCGA-44-2659 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-44-2661    TCGA-44-2662    TCGA-44-2665    TCGA-44-2666    TCGA-44-2668 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-44-3398    TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-55-1592 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-55-1594    TCGA-55-1595    TCGA-55-1596    TCGA-64-1676    TCGA-64-1677 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-64-1678    TCGA-64-1680    TCGA-67-3770    TCGA-67-3773    TCGA-67-3774 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
D128V2, multiclass
[1] "Remove cluster labels:" "HCK MUTATED"           
clus
  HCK MUTATED HCK WILD-TYPE 
            2            30 
   TCGA-05-4244    TCGA-05-4249    TCGA-05-4250    TCGA-35-3615    TCGA-35-4122 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-35-4123    TCGA-44-2655    TCGA-44-2656    TCGA-44-2657    TCGA-44-2659 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-44-2661    TCGA-44-2662    TCGA-44-2665    TCGA-44-2666    TCGA-44-2668 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-44-3398    TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-55-1592 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-55-1594    TCGA-55-1595    TCGA-55-1596    TCGA-64-1676    TCGA-64-1677 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
   TCGA-64-1678    TCGA-64-1680    TCGA-67-3770    TCGA-67-3773    TCGA-67-3774 
"HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" "HCK WILD-TYPE" 
D128V3, multiclass
        clus
vv       HCK MUTATED HCK WILD-TYPE
  CLUS_1           3            67
  CLUS_2           0            68
  CLUS_3           3            31
D128V4, multiclass
        clus
vv       HCK MUTATED HCK WILD-TYPE
  CLUS_1           2            32
  CLUS_2           0            33
  CLUS_3           1            42
D128V5, multiclass
        clus
vv       HCK MUTATED HCK WILD-TYPE
  CLUS_1           4            69
  CLUS_2           0            23
  CLUS_3           1            38
D128V6, multiclass
        clus
vv       HCK MUTATED HCK WILD-TYPE
  CLUS_1           2            75
  CLUS_2           0            26
  CLUS_3           3            29
D128V7, multiclass
        clus
vv       HCK MUTATED HCK WILD-TYPE
  CLUS_1           1            48
  CLUS_2           2            67
  CLUS_3           2            51
D128V8, multiclass
        clus
vv       HCK MUTATED HCK WILD-TYPE
  CLUS_1           2            48
  CLUS_2           1            67
  CLUS_3           2            51
D128V9, multiclass
        clus
vv       HCK MUTATED HCK WILD-TYPE
  CLUS_1           1            58
  CLUS_2           4            76
  CLUS_3           1            28
D128V10, multiclass
        clus
vv       HCK MUTATED HCK WILD-TYPE
  CLUS_1           0            20
  CLUS_2           5            86
  CLUS_3           1            56
D128V11, multiclass
        clus
vv       HCK MUTATED HCK WILD-TYPE
  CLUS_1           1            45
  CLUS_2           1            34
  CLUS_3           1            23
D128V12, multiclass
        clus
vv       HCK MUTATED HCK WILD-TYPE
  CLUS_1           0            11
  CLUS_2           2            44
  CLUS_3           1            47

Clustering(129) Variable = KDR MUTATION ANALYSIS
D129V1, multiclass
        clus
vv       KDR MUTATED KDR WILD-TYPE
  CLUS_1           0             5
  CLUS_2           0             9
  CLUS_3           3             9
  CLUS_4           0             6
D129V2, multiclass
        clus
vv       KDR MUTATED KDR WILD-TYPE
  CLUS_1           0             7
  CLUS_2           3            10
  CLUS_3           0            12
D129V3, multiclass
        clus
vv       KDR MUTATED KDR WILD-TYPE
  CLUS_1           6            64
  CLUS_2          11            57
  CLUS_3           3            31
D129V4, multiclass
        clus
vv       KDR MUTATED KDR WILD-TYPE
  CLUS_1           6            28
  CLUS_2           4            29
  CLUS_3           3            40
D129V5, multiclass
        clus
vv       KDR MUTATED KDR WILD-TYPE
  CLUS_1           8            65
  CLUS_2           2            21
  CLUS_3           2            37
D129V6, multiclass
        clus
vv       KDR MUTATED KDR WILD-TYPE
  CLUS_1           7            70
  CLUS_2           4            22
  CLUS_3           1            31
D129V7, multiclass
        clus
vv       KDR MUTATED KDR WILD-TYPE
  CLUS_1           5            44
  CLUS_2          12            57
  CLUS_3           3            50
D129V8, multiclass
        clus
vv       KDR MUTATED KDR WILD-TYPE
  CLUS_1           7            43
  CLUS_2           9            59
  CLUS_3           4            49
D129V9, multiclass
        clus
vv       KDR MUTATED KDR WILD-TYPE
  CLUS_1           6            53
  CLUS_2          10            70
  CLUS_3           2            27
D129V10, multiclass
        clus
vv       KDR MUTATED KDR WILD-TYPE
  CLUS_1           1            19
  CLUS_2          13            78
  CLUS_3           4            53
D129V11, multiclass
        clus
vv       KDR MUTATED KDR WILD-TYPE
  CLUS_1           4            42
  CLUS_2           7            28
  CLUS_3           1            23
D129V12, multiclass
        clus
vv       KDR MUTATED KDR WILD-TYPE
  CLUS_1           0            11
  CLUS_2           9            37
  CLUS_3           3            45

Clustering(130) Variable = BRS3 MUTATION ANALYSIS
D130V1, multiclass
[1] "Remove cluster labels:" "BRS3 MUTATED"          
clus
  BRS3 MUTATED BRS3 WILD-TYPE 
             1             31 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2656 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2659     TCGA-44-2661     TCGA-44-2662 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-44-2665     TCGA-44-2666     TCGA-44-2668     TCGA-44-3398 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-44-3918     TCGA-44-3919     TCGA-44-4112     TCGA-55-1592 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-55-1594     TCGA-55-1595     TCGA-55-1596     TCGA-64-1676 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-64-1677     TCGA-64-1678     TCGA-64-1680     TCGA-67-3770 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
D130V2, multiclass
[1] "Remove cluster labels:" "BRS3 MUTATED"          
clus
  BRS3 MUTATED BRS3 WILD-TYPE 
             1             31 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2656 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2659     TCGA-44-2661     TCGA-44-2662 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-44-2665     TCGA-44-2666     TCGA-44-2668     TCGA-44-3398 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-44-3918     TCGA-44-3919     TCGA-44-4112     TCGA-55-1592 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-55-1594     TCGA-55-1595     TCGA-55-1596     TCGA-64-1676 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-64-1677     TCGA-64-1678     TCGA-64-1680     TCGA-67-3770 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"BRS3 WILD-TYPE" "BRS3 WILD-TYPE" "BRS3 WILD-TYPE" 
D130V3, multiclass
        clus
vv       BRS3 MUTATED BRS3 WILD-TYPE
  CLUS_1            2             68
  CLUS_2            1             67
  CLUS_3            4             30
D130V4, multiclass
        clus
vv       BRS3 MUTATED BRS3 WILD-TYPE
  CLUS_1            3             31
  CLUS_2            1             32
  CLUS_3            1             42
D130V5, multiclass
        clus
vv       BRS3 MUTATED BRS3 WILD-TYPE
  CLUS_1            3             70
  CLUS_2            0             23
  CLUS_3            1             38
D130V6, multiclass
        clus
vv       BRS3 MUTATED BRS3 WILD-TYPE
  CLUS_1            1             76
  CLUS_2            1             25
  CLUS_3            2             30
D130V7, multiclass
        clus
vv       BRS3 MUTATED BRS3 WILD-TYPE
  CLUS_1            2             47
  CLUS_2            0             69
  CLUS_3            5             48
D130V8, multiclass
        clus
vv       BRS3 MUTATED BRS3 WILD-TYPE
  CLUS_1            0             50
  CLUS_2            3             65
  CLUS_3            4             49
D130V9, multiclass
        clus
vv       BRS3 MUTATED BRS3 WILD-TYPE
  CLUS_1            2             57
  CLUS_2            5             75
  CLUS_3            0             29
D130V10, multiclass
        clus
vv       BRS3 MUTATED BRS3 WILD-TYPE
  CLUS_1            0             20
  CLUS_2            6             85
  CLUS_3            1             56
D130V11, multiclass
        clus
vv       BRS3 MUTATED BRS3 WILD-TYPE
  CLUS_1            3             43
  CLUS_2            2             33
  CLUS_3            0             24
D130V12, multiclass
        clus
vv       BRS3 MUTATED BRS3 WILD-TYPE
  CLUS_1            0             11
  CLUS_2            3             43
  CLUS_3            2             46

Clustering(131) Variable = LPPR4 MUTATION ANALYSIS
D131V1, multiclass
        clus
vv       LPPR4 MUTATED LPPR4 WILD-TYPE
  CLUS_1             0               5
  CLUS_2             2               7
  CLUS_3             2              10
  CLUS_4             0               6
D131V2, multiclass
        clus
vv       LPPR4 MUTATED LPPR4 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             3              10
  CLUS_3             1              11
D131V3, multiclass
        clus
vv       LPPR4 MUTATED LPPR4 WILD-TYPE
  CLUS_1             7              63
  CLUS_2             5              63
  CLUS_3             2              32
D131V4, multiclass
        clus
vv       LPPR4 MUTATED LPPR4 WILD-TYPE
  CLUS_1             2              32
  CLUS_2             5              28
  CLUS_3             3              40
D131V5, multiclass
        clus
vv       LPPR4 MUTATED LPPR4 WILD-TYPE
  CLUS_1             8              65
  CLUS_2             0              23
  CLUS_3             2              37
D131V6, multiclass
        clus
vv       LPPR4 MUTATED LPPR4 WILD-TYPE
  CLUS_1             8              69
  CLUS_2             1              25
  CLUS_3             1              31
D131V7, multiclass
        clus
vv       LPPR4 MUTATED LPPR4 WILD-TYPE
  CLUS_1             2              47
  CLUS_2             8              61
  CLUS_3             4              49
D131V8, multiclass
        clus
vv       LPPR4 MUTATED LPPR4 WILD-TYPE
  CLUS_1             6              44
  CLUS_2             4              64
  CLUS_3             4              49
D131V9, multiclass
        clus
vv       LPPR4 MUTATED LPPR4 WILD-TYPE
  CLUS_1             5              54
  CLUS_2             6              74
  CLUS_3             2              27
D131V10, multiclass
        clus
vv       LPPR4 MUTATED LPPR4 WILD-TYPE
  CLUS_1             1              19
  CLUS_2             8              83
  CLUS_3             4              53
D131V11, multiclass
        clus
vv       LPPR4 MUTATED LPPR4 WILD-TYPE
  CLUS_1             4              42
  CLUS_2             2              33
  CLUS_3             2              22
D131V12, multiclass
        clus
vv       LPPR4 MUTATED LPPR4 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             3              43
  CLUS_3             5              43

Clustering(132) Variable = KDM5C MUTATION ANALYSIS
D132V1, multiclass
[1] "Remove cluster labels:" "KDM5C MUTATED"         
clus
  KDM5C MUTATED KDM5C WILD-TYPE 
              2              30 
     TCGA-05-4249      TCGA-05-4250      TCGA-35-3615      TCGA-35-4122 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-35-4123      TCGA-44-2655      TCGA-44-2656      TCGA-44-2657 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1678 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-64-1680      TCGA-67-3770      TCGA-67-3771      TCGA-67-3772 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-67-3773      TCGA-67-3774 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
D132V2, multiclass
[1] "Remove cluster labels:" "KDM5C MUTATED"         
clus
  KDM5C MUTATED KDM5C WILD-TYPE 
              2              30 
     TCGA-05-4249      TCGA-05-4250      TCGA-35-3615      TCGA-35-4122 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-35-4123      TCGA-44-2655      TCGA-44-2656      TCGA-44-2657 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1678 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-64-1680      TCGA-67-3770      TCGA-67-3771      TCGA-67-3772 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
     TCGA-67-3773      TCGA-67-3774 
"KDM5C WILD-TYPE" "KDM5C WILD-TYPE" 
D132V3, multiclass
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  CLUS_1             2              68
  CLUS_2             3              65
  CLUS_3             3              31
D132V4, multiclass
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  CLUS_1             1              33
  CLUS_2             2              31
  CLUS_3             0              43
D132V5, multiclass
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  CLUS_1             4              69
  CLUS_2             1              22
  CLUS_3             2              37
D132V6, multiclass
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  CLUS_1             2              75
  CLUS_2             2              24
  CLUS_3             3              29
D132V7, multiclass
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  CLUS_1             3              46
  CLUS_2             1              68
  CLUS_3             4              49
D132V8, multiclass
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  CLUS_1             0              50
  CLUS_2             4              64
  CLUS_3             4              49
D132V9, multiclass
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  CLUS_1             2              57
  CLUS_2             6              74
  CLUS_3             0              29
D132V10, multiclass
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  CLUS_1             0              20
  CLUS_2             7              84
  CLUS_3             1              56
D132V11, multiclass
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  CLUS_1             1              45
  CLUS_2             1              34
  CLUS_3             1              23
D132V12, multiclass
        clus
vv       KDM5C MUTATED KDM5C WILD-TYPE
  CLUS_1             1              10
  CLUS_2             1              45
  CLUS_3             1              47

Clustering(133) Variable = TRPC1 MUTATION ANALYSIS
D133V1, multiclass
[1] "Remove cluster labels:" "TRPC1 MUTATED"         
clus
  TRPC1 MUTATED TRPC1 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2666      TCGA-44-2668      TCGA-44-3398 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-44-3918      TCGA-44-3919      TCGA-44-4112      TCGA-55-1592 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1595      TCGA-64-1676      TCGA-64-1677 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
D133V2, multiclass
[1] "Remove cluster labels:" "TRPC1 MUTATED"         
clus
  TRPC1 MUTATED TRPC1 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2666      TCGA-44-2668      TCGA-44-3398 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-44-3918      TCGA-44-3919      TCGA-44-4112      TCGA-55-1592 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1595      TCGA-64-1676      TCGA-64-1677 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" "TRPC1 WILD-TYPE" 
D133V3, multiclass
        clus
vv       TRPC1 MUTATED TRPC1 WILD-TYPE
  CLUS_1             2              68
  CLUS_2             5              63
  CLUS_3             0              34
D133V4, multiclass
        clus
vv       TRPC1 MUTATED TRPC1 WILD-TYPE
  CLUS_1             2              32
  CLUS_2             1              32
  CLUS_3             3              40
D133V5, multiclass
        clus
vv       TRPC1 MUTATED TRPC1 WILD-TYPE
  CLUS_1             4              69
  CLUS_2             1              22
  CLUS_3             0              39
D133V6, multiclass
        clus
vv       TRPC1 MUTATED TRPC1 WILD-TYPE
  CLUS_1             3              74
  CLUS_2             2              24
  CLUS_3             0              32
D133V7, multiclass
        clus
vv       TRPC1 MUTATED TRPC1 WILD-TYPE
  CLUS_1             2              47
  CLUS_2             2              67
  CLUS_3             3              50
D133V8, multiclass
        clus
vv       TRPC1 MUTATED TRPC1 WILD-TYPE
  CLUS_1             0              50
  CLUS_2             5              63
  CLUS_3             2              51
D133V9, multiclass
        clus
vv       TRPC1 MUTATED TRPC1 WILD-TYPE
  CLUS_1             2              57
  CLUS_2             4              76
  CLUS_3             1              28
D133V10, multiclass
        clus
vv       TRPC1 MUTATED TRPC1 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             5              86
  CLUS_3             2              55
D133V11, multiclass
        clus
vv       TRPC1 MUTATED TRPC1 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             3              32
  CLUS_3             0              24
D133V12, multiclass
        clus
vv       TRPC1 MUTATED TRPC1 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             3              43
  CLUS_3             3              45

Clustering(134) Variable = HAX1 MUTATION ANALYSIS
D134V1, multiclass
D134V2, multiclass
D134V3, multiclass
        clus
vv       HAX1 MUTATED HAX1 WILD-TYPE
  CLUS_1            1             69
  CLUS_2            2             66
  CLUS_3            1             33
D134V4, multiclass
        clus
vv       HAX1 MUTATED HAX1 WILD-TYPE
  CLUS_1            0             34
  CLUS_2            2             31
  CLUS_3            1             42
D134V5, multiclass
        clus
vv       HAX1 MUTATED HAX1 WILD-TYPE
  CLUS_1            2             71
  CLUS_2            0             23
  CLUS_3            2             37
D134V6, multiclass
        clus
vv       HAX1 MUTATED HAX1 WILD-TYPE
  CLUS_1            2             75
  CLUS_2            1             25
  CLUS_3            1             31
D134V7, multiclass
        clus
vv       HAX1 MUTATED HAX1 WILD-TYPE
  CLUS_1            1             48
  CLUS_2            2             67
  CLUS_3            1             52
D134V8, multiclass
        clus
vv       HAX1 MUTATED HAX1 WILD-TYPE
  CLUS_1            2             48
  CLUS_2            2             66
  CLUS_3            0             53
D134V9, multiclass
        clus
vv       HAX1 MUTATED HAX1 WILD-TYPE
  CLUS_1            1             58
  CLUS_2            3             77
  CLUS_3            0             29
D134V10, multiclass
        clus
vv       HAX1 MUTATED HAX1 WILD-TYPE
  CLUS_1            0             20
  CLUS_2            3             88
  CLUS_3            1             56
D134V11, multiclass
        clus
vv       HAX1 MUTATED HAX1 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            1             34
  CLUS_3            0             24
D134V12, multiclass
        clus
vv       HAX1 MUTATED HAX1 WILD-TYPE
  CLUS_1            0             11
  CLUS_2            1             45
  CLUS_3            2             46

Clustering(135) Variable = ZNF260 MUTATION ANALYSIS
D135V1, multiclass
D135V2, multiclass
D135V3, multiclass
        clus
vv       ZNF260 MUTATED ZNF260 WILD-TYPE
  CLUS_1              1               69
  CLUS_2              1               67
  CLUS_3              2               32
D135V4, multiclass
        clus
vv       ZNF260 MUTATED ZNF260 WILD-TYPE
  CLUS_1              1               33
  CLUS_2              1               32
  CLUS_3              2               41
D135V5, multiclass
        clus
vv       ZNF260 MUTATED ZNF260 WILD-TYPE
  CLUS_1              1               72
  CLUS_2              0               23
  CLUS_3              2               37
D135V6, multiclass
        clus
vv       ZNF260 MUTATED ZNF260 WILD-TYPE
  CLUS_1              2               75
  CLUS_2              0               26
  CLUS_3              1               31
D135V7, multiclass
        clus
vv       ZNF260 MUTATED ZNF260 WILD-TYPE
  CLUS_1              1               48
  CLUS_2              0               69
  CLUS_3              3               50
D135V8, multiclass
        clus
vv       ZNF260 MUTATED ZNF260 WILD-TYPE
  CLUS_1              0               50
  CLUS_2              2               66
  CLUS_3              2               51
D135V9, multiclass
        clus
vv       ZNF260 MUTATED ZNF260 WILD-TYPE
  CLUS_1              2               57
  CLUS_2              1               79
  CLUS_3              1               28
D135V10, multiclass
        clus
vv       ZNF260 MUTATED ZNF260 WILD-TYPE
  CLUS_1              1               19
  CLUS_2              1               90
  CLUS_3              2               55
D135V11, multiclass
        clus
vv       ZNF260 MUTATED ZNF260 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              0               35
  CLUS_3              1               23
D135V12, multiclass
        clus
vv       ZNF260 MUTATED ZNF260 WILD-TYPE
  CLUS_1              1               10
  CLUS_2              1               45
  CLUS_3              2               46

Clustering(136) Variable = OLAH MUTATION ANALYSIS
D136V1, multiclass
[1] "Remove cluster labels:" "OLAH MUTATED"          
clus
  OLAH MUTATED OLAH WILD-TYPE 
             2             30 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2656 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2659     TCGA-44-2661     TCGA-44-2662 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-2665     TCGA-44-2666     TCGA-44-2668     TCGA-44-3398 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-3918     TCGA-44-3919     TCGA-44-4112     TCGA-55-1592 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-55-1594     TCGA-55-1595     TCGA-55-1596     TCGA-64-1676 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-64-1677     TCGA-64-1680     TCGA-67-3770     TCGA-67-3772 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-67-3773     TCGA-67-3774 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" 
D136V2, multiclass
[1] "Remove cluster labels:" "OLAH MUTATED"          
clus
  OLAH MUTATED OLAH WILD-TYPE 
             2             30 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2656 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2659     TCGA-44-2661     TCGA-44-2662 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-2665     TCGA-44-2666     TCGA-44-2668     TCGA-44-3398 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-44-3918     TCGA-44-3919     TCGA-44-4112     TCGA-55-1592 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-55-1594     TCGA-55-1595     TCGA-55-1596     TCGA-64-1676 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-64-1677     TCGA-64-1680     TCGA-67-3770     TCGA-67-3772 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" "OLAH WILD-TYPE" 
    TCGA-67-3773     TCGA-67-3774 
"OLAH WILD-TYPE" "OLAH WILD-TYPE" 
D136V3, multiclass
        clus
vv       OLAH MUTATED OLAH WILD-TYPE
  CLUS_1            2             68
  CLUS_2            1             67
  CLUS_3            4             30
D136V4, multiclass
        clus
vv       OLAH MUTATED OLAH WILD-TYPE
  CLUS_1            3             31
  CLUS_2            1             32
  CLUS_3            0             43
D136V5, multiclass
        clus
vv       OLAH MUTATED OLAH WILD-TYPE
  CLUS_1            2             71
  CLUS_2            0             23
  CLUS_3            3             36
D136V6, multiclass
        clus
vv       OLAH MUTATED OLAH WILD-TYPE
  CLUS_1            0             77
  CLUS_2            1             25
  CLUS_3            4             28
D136V7, multiclass
        clus
vv       OLAH MUTATED OLAH WILD-TYPE
  CLUS_1            0             49
  CLUS_2            1             68
  CLUS_3            6             47
D136V8, multiclass
        clus
vv       OLAH MUTATED OLAH WILD-TYPE
  CLUS_1            0             50
  CLUS_2            1             67
  CLUS_3            6             47
D136V9, multiclass
        clus
vv       OLAH MUTATED OLAH WILD-TYPE
  CLUS_1            0             59
  CLUS_2            7             73
  CLUS_3            0             29
D136V10, multiclass
        clus
vv       OLAH MUTATED OLAH WILD-TYPE
  CLUS_1            0             20
  CLUS_2            7             84
  CLUS_3            0             57
D136V11, multiclass
        clus
vv       OLAH MUTATED OLAH WILD-TYPE
  CLUS_1            1             45
  CLUS_2            3             32
  CLUS_3            0             24
D136V12, multiclass
        clus
vv       OLAH MUTATED OLAH WILD-TYPE
  CLUS_1            0             11
  CLUS_2            3             43
  CLUS_3            1             47

Clustering(137) Variable = C9ORF64 MUTATION ANALYSIS
D137V1, multiclass
        clus
vv       C9ORF64 MUTATED C9ORF64 WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               3                 6
  CLUS_3               0                12
  CLUS_4               0                 6
D137V2, multiclass
        clus
vv       C9ORF64 MUTATED C9ORF64 WILD-TYPE
  CLUS_1               0                 7
  CLUS_2               1                12
  CLUS_3               2                10
D137V3, multiclass
        clus
vv       C9ORF64 MUTATED C9ORF64 WILD-TYPE
  CLUS_1               2                68
  CLUS_2               1                67
  CLUS_3               0                34
D137V4, multiclass
[1] "Remove cluster labels:" "C9ORF64 MUTATED"       
clus
  C9ORF64 MUTATED C9ORF64 WILD-TYPE 
                2               108 
       TCGA-05-4384        TCGA-05-4390        TCGA-05-4396        TCGA-05-4405 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4410        TCGA-05-4415        TCGA-05-4417        TCGA-05-4424 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-4425        TCGA-05-4427        TCGA-05-4433        TCGA-05-5420 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-5423        TCGA-05-5425        TCGA-05-5428        TCGA-05-5429 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-05-5715        TCGA-35-5375        TCGA-38-4631        TCGA-38-4632 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-38-6178        TCGA-44-2665        TCGA-44-2666        TCGA-44-3918 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-4112        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4487        TCGA-49-4488 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-49-6767 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-50-5044        TCGA-50-5045        TCGA-50-5049        TCGA-50-5051 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-50-5055        TCGA-50-5066        TCGA-50-5068        TCGA-50-5072 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-50-5930        TCGA-50-5931        TCGA-50-5932        TCGA-50-5933 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-50-5935        TCGA-50-5936        TCGA-50-5939        TCGA-50-5941 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-50-5942        TCGA-50-5944        TCGA-50-5946        TCGA-50-6590 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-50-6591        TCGA-50-6592        TCGA-50-6593        TCGA-50-6594 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-50-6595        TCGA-50-6597        TCGA-55-5899        TCGA-55-6543 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-64-5774        TCGA-64-5775 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-67-4679        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4676        TCGA-75-5122 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-75-5125        TCGA-75-5126        TCGA-75-5146        TCGA-75-5147 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-75-6203        TCGA-75-6205        TCGA-75-6207        TCGA-75-6211 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-75-6212        TCGA-80-5611        TCGA-86-6562        TCGA-91-6828 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" "C9ORF64 WILD-TYPE" 
D137V5, multiclass
        clus
vv       C9ORF64 MUTATED C9ORF64 WILD-TYPE
  CLUS_1               2                71
  CLUS_2               0                23
  CLUS_3               1                38
D137V6, multiclass
        clus
vv       C9ORF64 MUTATED C9ORF64 WILD-TYPE
  CLUS_1               2                75
  CLUS_2               0                26
  CLUS_3               1                31
D137V7, multiclass
        clus
vv       C9ORF64 MUTATED C9ORF64 WILD-TYPE
  CLUS_1               0                49
  CLUS_2               3                66
  CLUS_3               0                53
D137V8, multiclass
        clus
vv       C9ORF64 MUTATED C9ORF64 WILD-TYPE
  CLUS_1               3                47
  CLUS_2               0                68
  CLUS_3               0                53
D137V9, multiclass
        clus
vv       C9ORF64 MUTATED C9ORF64 WILD-TYPE
  CLUS_1               0                59
  CLUS_2               2                78
  CLUS_3               1                28
D137V10, multiclass
        clus
vv       C9ORF64 MUTATED C9ORF64 WILD-TYPE
  CLUS_1               0                20
  CLUS_2               3                88
  CLUS_3               0                57
D137V11, multiclass
D137V12, multiclass

Clustering(138) Variable = ATM MUTATION ANALYSIS
D138V1, multiclass
[1] "Remove cluster labels:" "ATM MUTATED"           
clus
  ATM MUTATED ATM WILD-TYPE 
            2            30 
   TCGA-05-4249    TCGA-05-4250    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-44-2655    TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-44-2662    TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3398 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-55-1592    TCGA-55-1594 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-55-1596    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773    TCGA-67-3774 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
D138V2, multiclass
[1] "Remove cluster labels:" "ATM MUTATED"           
clus
  ATM MUTATED ATM WILD-TYPE 
            2            30 
   TCGA-05-4249    TCGA-05-4250    TCGA-35-3615    TCGA-35-4122    TCGA-35-4123 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-44-2655    TCGA-44-2656    TCGA-44-2657    TCGA-44-2659    TCGA-44-2661 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-44-2662    TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3398 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-55-1592    TCGA-55-1594 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-55-1596    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773    TCGA-67-3774 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
D138V3, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           4            66
  CLUS_2           5            63
  CLUS_3           6            28
D138V4, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           2            32
  CLUS_2           6            27
  CLUS_3           0            43
D138V5, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           4            69
  CLUS_2           3            20
  CLUS_3           3            36
D138V6, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           3            74
  CLUS_2           4            22
  CLUS_3           3            29
D138V7, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           4            45
  CLUS_2           4            65
  CLUS_3           7            46
D138V8, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           3            47
  CLUS_2           5            63
  CLUS_3           7            46
D138V9, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           4            55
  CLUS_2          10            70
  CLUS_3           1            28
D138V10, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           0            20
  CLUS_2          11            80
  CLUS_3           4            53
D138V11, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           2            44
  CLUS_2           4            31
  CLUS_3           2            22
D138V12, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           2             9
  CLUS_2           4            42
  CLUS_3           2            46

Clustering(139) Variable = POLR3B MUTATION ANALYSIS
D139V1, multiclass
        clus
vv       POLR3B MUTATED POLR3B WILD-TYPE
  CLUS_1              0                5
  CLUS_2              0                9
  CLUS_3              1               11
  CLUS_4              2                4
D139V2, multiclass
        clus
vv       POLR3B MUTATED POLR3B WILD-TYPE
  CLUS_1              2                5
  CLUS_2              1               12
  CLUS_3              0               12
D139V3, multiclass
        clus
vv       POLR3B MUTATED POLR3B WILD-TYPE
  CLUS_1              1               69
  CLUS_2              5               63
  CLUS_3              5               29
D139V4, multiclass
        clus
vv       POLR3B MUTATED POLR3B WILD-TYPE
  CLUS_1              1               33
  CLUS_2              2               31
  CLUS_3              2               41
D139V5, multiclass
        clus
vv       POLR3B MUTATED POLR3B WILD-TYPE
  CLUS_1              4               69
  CLUS_2              0               23
  CLUS_3              3               36
D139V6, multiclass
        clus
vv       POLR3B MUTATED POLR3B WILD-TYPE
  CLUS_1              3               74
  CLUS_2              1               25
  CLUS_3              3               29
D139V7, multiclass
        clus
vv       POLR3B MUTATED POLR3B WILD-TYPE
  CLUS_1              2               47
  CLUS_2              5               64
  CLUS_3              4               49
D139V8, multiclass
        clus
vv       POLR3B MUTATED POLR3B WILD-TYPE
  CLUS_1              2               48
  CLUS_2              3               65
  CLUS_3              6               47
D139V9, multiclass
        clus
vv       POLR3B MUTATED POLR3B WILD-TYPE
  CLUS_1              1               58
  CLUS_2              7               73
  CLUS_3              2               27
D139V10, multiclass
        clus
vv       POLR3B MUTATED POLR3B WILD-TYPE
  CLUS_1              1               19
  CLUS_2              9               82
  CLUS_3              0               57
D139V11, multiclass
        clus
vv       POLR3B MUTATED POLR3B WILD-TYPE
  CLUS_1              3               43
  CLUS_2              2               33
  CLUS_3              0               24
D139V12, multiclass
        clus
vv       POLR3B MUTATED POLR3B WILD-TYPE
  CLUS_1              0               11
  CLUS_2              3               43
  CLUS_3              2               46

Clustering(140) Variable = C1ORF49 MUTATION ANALYSIS
D140V1, multiclass
[1] "Remove cluster labels:" "C1ORF49 MUTATED"       
clus
  C1ORF49 MUTATED C1ORF49 WILD-TYPE 
                1                31 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2656 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3398 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-55-1592 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-55-1594        TCGA-55-1595        TCGA-55-1596        TCGA-64-1676 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1680        TCGA-67-3770        TCGA-67-3771 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
D140V2, multiclass
[1] "Remove cluster labels:" "C1ORF49 MUTATED"       
clus
  C1ORF49 MUTATED C1ORF49 WILD-TYPE 
                1                31 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2656 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3398 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-55-1592 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-55-1594        TCGA-55-1595        TCGA-55-1596        TCGA-64-1676 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1680        TCGA-67-3770        TCGA-67-3771 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" "C1ORF49 WILD-TYPE" 
D140V3, multiclass
        clus
vv       C1ORF49 MUTATED C1ORF49 WILD-TYPE
  CLUS_1               3                67
  CLUS_2               0                68
  CLUS_3               3                31
D140V4, multiclass
        clus
vv       C1ORF49 MUTATED C1ORF49 WILD-TYPE
  CLUS_1               3                31
  CLUS_2               2                31
  CLUS_3               0                43
D140V5, multiclass
        clus
vv       C1ORF49 MUTATED C1ORF49 WILD-TYPE
  CLUS_1               2                71
  CLUS_2               0                23
  CLUS_3               3                36
D140V6, multiclass
        clus
vv       C1ORF49 MUTATED C1ORF49 WILD-TYPE
  CLUS_1               2                75
  CLUS_2               0                26
  CLUS_3               3                29
D140V7, multiclass
        clus
vv       C1ORF49 MUTATED C1ORF49 WILD-TYPE
  CLUS_1               0                49
  CLUS_2               4                65
  CLUS_3               2                51
D140V8, multiclass
        clus
vv       C1ORF49 MUTATED C1ORF49 WILD-TYPE
  CLUS_1               2                48
  CLUS_2               1                67
  CLUS_3               3                50
D140V9, multiclass
        clus
vv       C1ORF49 MUTATED C1ORF49 WILD-TYPE
  CLUS_1               2                57
  CLUS_2               4                76
  CLUS_3               0                29
D140V10, multiclass
        clus
vv       C1ORF49 MUTATED C1ORF49 WILD-TYPE
  CLUS_1               0                20
  CLUS_2               4                87
  CLUS_3               2                55
D140V11, multiclass
        clus
vv       C1ORF49 MUTATED C1ORF49 WILD-TYPE
  CLUS_1               2                44
  CLUS_2               3                32
  CLUS_3               0                24
D140V12, multiclass
        clus
vv       C1ORF49 MUTATED C1ORF49 WILD-TYPE
  CLUS_1               0                11
  CLUS_2               4                42
  CLUS_3               1                47

Clustering(141) Variable = MFSD8 MUTATION ANALYSIS
D141V1, multiclass
        clus
vv       MFSD8 MUTATED MFSD8 WILD-TYPE
  CLUS_1             0               5
  CLUS_2             1               8
  CLUS_3             0              12
  CLUS_4             3               3
D141V2, multiclass
        clus
vv       MFSD8 MUTATED MFSD8 WILD-TYPE
  CLUS_1             3               4
  CLUS_2             0              13
  CLUS_3             1              11
D141V3, multiclass
        clus
vv       MFSD8 MUTATED MFSD8 WILD-TYPE
  CLUS_1             3              67
  CLUS_2             1              67
  CLUS_3             1              33
D141V4, multiclass
[1] "Remove cluster labels:" "MFSD8 MUTATED"         
clus
  MFSD8 MUTATED MFSD8 WILD-TYPE 
              1             109 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4405      TCGA-05-4410 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4424      TCGA-05-4425 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4433      TCGA-05-5420      TCGA-05-5423 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-05-5425      TCGA-05-5428      TCGA-05-5429      TCGA-05-5715 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-35-5375      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-44-3918      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4487 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4512      TCGA-49-4514 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-49-6742      TCGA-49-6743      TCGA-49-6744      TCGA-49-6745 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-49-6767      TCGA-50-5044      TCGA-50-5045      TCGA-50-5049 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-5051      TCGA-50-5055      TCGA-50-5066      TCGA-50-5068 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-5072      TCGA-50-5930      TCGA-50-5931      TCGA-50-5932 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-5933      TCGA-50-5935      TCGA-50-5936      TCGA-50-5939 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-5941      TCGA-50-5942      TCGA-50-5944      TCGA-50-5946 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-6590      TCGA-50-6591      TCGA-50-6592      TCGA-50-6593 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-6594      TCGA-50-6595      TCGA-50-6597      TCGA-55-5899 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-55-6543      TCGA-55-6642      TCGA-55-6712      TCGA-64-5774 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-64-5775      TCGA-64-5778      TCGA-64-5779      TCGA-64-5781 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-64-5815      TCGA-67-4679      TCGA-67-6215      TCGA-67-6216 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-67-6217      TCGA-71-6725      TCGA-73-4658      TCGA-73-4676 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-75-5122      TCGA-75-5125      TCGA-75-5126      TCGA-75-5146 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-75-5147      TCGA-75-6203      TCGA-75-6205      TCGA-75-6207 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-75-6211      TCGA-75-6212      TCGA-80-5611      TCGA-86-6562 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-91-6836 
"MFSD8 WILD-TYPE" 
D141V5, multiclass
        clus
vv       MFSD8 MUTATED MFSD8 WILD-TYPE
  CLUS_1             2              71
  CLUS_2             0              23
  CLUS_3             2              37
D141V6, multiclass
        clus
vv       MFSD8 MUTATED MFSD8 WILD-TYPE
  CLUS_1             1              76
  CLUS_2             1              25
  CLUS_3             2              30
D141V7, multiclass
        clus
vv       MFSD8 MUTATED MFSD8 WILD-TYPE
  CLUS_1             0              49
  CLUS_2             1              68
  CLUS_3             4              49
D141V8, multiclass
        clus
vv       MFSD8 MUTATED MFSD8 WILD-TYPE
  CLUS_1             1              49
  CLUS_2             1              67
  CLUS_3             3              50
D141V9, multiclass
        clus
vv       MFSD8 MUTATED MFSD8 WILD-TYPE
  CLUS_1             0              59
  CLUS_2             5              75
  CLUS_3             0              29
D141V10, multiclass
        clus
vv       MFSD8 MUTATED MFSD8 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             5              86
  CLUS_3             0              57
D141V11, multiclass
[1] "Remove cluster labels:" "MFSD8 MUTATED"         
clus
  MFSD8 MUTATED MFSD8 WILD-TYPE 
              1             104 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4405      TCGA-05-4410 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4424      TCGA-05-4425 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4433      TCGA-05-5420      TCGA-05-5423 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-05-5425      TCGA-05-5428      TCGA-05-5429      TCGA-05-5715 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-35-5375      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-44-5643      TCGA-44-5645      TCGA-44-6144      TCGA-44-6145 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-44-6146      TCGA-44-6147      TCGA-44-6148      TCGA-44-6774 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-44-6775      TCGA-44-6776      TCGA-44-6777      TCGA-44-6778 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-44-6779      TCGA-49-4487      TCGA-49-4488      TCGA-49-4490 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-49-6767      TCGA-50-5044 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-4679 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4676      TCGA-75-5122      TCGA-75-5125 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-75-5126      TCGA-75-5146      TCGA-75-5147      TCGA-75-6203 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-75-6205      TCGA-75-6206      TCGA-75-6207      TCGA-75-6211 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-75-6212      TCGA-80-5611      TCGA-86-6562      TCGA-91-6828 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-91-6829      TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
D141V12, multiclass
[1] "Remove cluster labels:" "MFSD8 MUTATED"         
clus
  MFSD8 MUTATED MFSD8 WILD-TYPE 
              1             104 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4405      TCGA-05-4410 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4424      TCGA-05-4425 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4433      TCGA-05-5420      TCGA-05-5423 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-05-5425      TCGA-05-5428      TCGA-05-5429      TCGA-05-5715 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-35-5375      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-44-5643      TCGA-44-5645      TCGA-44-6144      TCGA-44-6145 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-44-6146      TCGA-44-6147      TCGA-44-6148      TCGA-44-6774 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-44-6775      TCGA-44-6776      TCGA-44-6777      TCGA-44-6778 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-44-6779      TCGA-49-4487      TCGA-49-4488      TCGA-49-4490 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-49-6767      TCGA-50-5044 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-4679 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4676      TCGA-75-5122      TCGA-75-5125 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-75-5126      TCGA-75-5146      TCGA-75-5147      TCGA-75-6203 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-75-6205      TCGA-75-6206      TCGA-75-6207      TCGA-75-6211 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-75-6212      TCGA-80-5611      TCGA-86-6562      TCGA-91-6828 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 
     TCGA-91-6829      TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" "MFSD8 WILD-TYPE" 

Clustering(142) Variable = OR4A15 MUTATION ANALYSIS
D142V1, multiclass
[1] "Remove cluster labels:" "OR4A15 MUTATED"        
clus
  OR4A15 MUTATED OR4A15 WILD-TYPE 
               2               30 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2657 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-44-2659       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3398       TCGA-44-3918 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1677       TCGA-64-1678 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-64-1680       TCGA-67-3770       TCGA-67-3771       TCGA-67-3772 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
D142V2, multiclass
[1] "Remove cluster labels:" "OR4A15 MUTATED"        
clus
  OR4A15 MUTATED OR4A15 WILD-TYPE 
               2               30 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2657 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-44-2659       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3398       TCGA-44-3918 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1677       TCGA-64-1678 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-64-1680       TCGA-67-3770       TCGA-67-3771       TCGA-67-3772 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
D142V3, multiclass
        clus
vv       OR4A15 MUTATED OR4A15 WILD-TYPE
  CLUS_1              9               61
  CLUS_2              0               68
  CLUS_3              5               29
D142V4, multiclass
        clus
vv       OR4A15 MUTATED OR4A15 WILD-TYPE
  CLUS_1              3               31
  CLUS_2              4               29
  CLUS_3              1               42
D142V5, multiclass
        clus
vv       OR4A15 MUTATED OR4A15 WILD-TYPE
  CLUS_1              7               66
  CLUS_2              1               22
  CLUS_3              2               37
D142V6, multiclass
        clus
vv       OR4A15 MUTATED OR4A15 WILD-TYPE
  CLUS_1              8               69
  CLUS_2              1               25
  CLUS_3              1               31
D142V7, multiclass
        clus
vv       OR4A15 MUTATED OR4A15 WILD-TYPE
  CLUS_1              0               49
  CLUS_2             10               59
  CLUS_3              4               49
D142V8, multiclass
        clus
vv       OR4A15 MUTATED OR4A15 WILD-TYPE
  CLUS_1              8               42
  CLUS_2              1               67
  CLUS_3              5               48
D142V9, multiclass
        clus
vv       OR4A15 MUTATED OR4A15 WILD-TYPE
  CLUS_1              2               57
  CLUS_2             10               70
  CLUS_3              2               27
D142V10, multiclass
        clus
vv       OR4A15 MUTATED OR4A15 WILD-TYPE
  CLUS_1              1               19
  CLUS_2             12               79
  CLUS_3              1               56
D142V11, multiclass
        clus
vv       OR4A15 MUTATED OR4A15 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              3               32
  CLUS_3              3               21
D142V12, multiclass
        clus
vv       OR4A15 MUTATED OR4A15 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              6               40
  CLUS_3              1               47

Clustering(143) Variable = LELP1 MUTATION ANALYSIS
D143V1, multiclass
[1] "Remove cluster labels:" "LELP1 MUTATED"         
clus
  LELP1 MUTATED LELP1 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2657 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
D143V2, multiclass
[1] "Remove cluster labels:" "LELP1 MUTATED"         
clus
  LELP1 MUTATED LELP1 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2657 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
D143V3, multiclass
        clus
vv       LELP1 MUTATED LELP1 WILD-TYPE
  CLUS_1             2              68
  CLUS_2             0              68
  CLUS_3             1              33
D143V4, multiclass
        clus
vv       LELP1 MUTATED LELP1 WILD-TYPE
  CLUS_1             0              34
  CLUS_2             3              30
  CLUS_3             0              43
D143V5, multiclass
[1] "Remove cluster labels:" "LELP1 MUTATED"         
clus
  LELP1 MUTATED LELP1 WILD-TYPE 
              2             133 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-05-4384 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4396      TCGA-05-4397      TCGA-05-4398      TCGA-05-4402 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4405      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4426      TCGA-05-4427      TCGA-05-4430 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4629      TCGA-38-6178      TCGA-44-2657 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2665      TCGA-44-2668      TCGA-44-3396 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-3398      TCGA-44-3918      TCGA-44-3919      TCGA-44-4112 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-5643      TCGA-44-5645      TCGA-44-6144      TCGA-44-6145 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-6146      TCGA-44-6147      TCGA-44-6148      TCGA-44-6774 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-6775      TCGA-44-6776      TCGA-44-6777      TCGA-44-6778 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-6779      TCGA-49-4486      TCGA-49-4487      TCGA-49-4488 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-49-4494      TCGA-49-4501      TCGA-49-4505      TCGA-49-4506 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-49-4507      TCGA-49-4510      TCGA-49-4512      TCGA-49-4514 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-49-6742      TCGA-49-6743      TCGA-49-6744      TCGA-49-6745 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-49-6767      TCGA-50-5044      TCGA-50-5045      TCGA-50-5049 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5051      TCGA-50-5066      TCGA-50-5068      TCGA-50-5072 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5930      TCGA-50-5931      TCGA-50-5932      TCGA-50-5933 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1596 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6712      TCGA-64-1676 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-64-1677      TCGA-64-1678      TCGA-64-1680      TCGA-64-5774 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-64-5778      TCGA-64-5779      TCGA-64-5781      TCGA-64-5815 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-6215      TCGA-67-6216      TCGA-67-6217 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4658      TCGA-73-4659      TCGA-73-4670 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-73-4675      TCGA-73-4676      TCGA-75-5122      TCGA-75-5125 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-75-6203      TCGA-75-6205      TCGA-75-6206      TCGA-75-6207 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-75-6211      TCGA-75-6212      TCGA-80-5611      TCGA-86-6562 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-91-6836 
"LELP1 WILD-TYPE" 
D143V6, multiclass
[1] "Remove cluster labels:" "LELP1 MUTATED"         
clus
  LELP1 MUTATED LELP1 WILD-TYPE 
              2             133 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-05-4384 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4396      TCGA-05-4397      TCGA-05-4398      TCGA-05-4402 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4405      TCGA-05-4417      TCGA-05-4418      TCGA-05-4420 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4422      TCGA-05-4426      TCGA-05-4427      TCGA-05-4430 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4434      TCGA-05-5420      TCGA-05-5423      TCGA-05-5425 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-5429      TCGA-05-5715      TCGA-35-3615      TCGA-35-4122 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4629      TCGA-38-6178      TCGA-44-2657 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-2661      TCGA-44-2665      TCGA-44-2668      TCGA-44-3396 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-3398      TCGA-44-3918      TCGA-44-3919      TCGA-44-4112 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-5643      TCGA-44-5645      TCGA-44-6144      TCGA-44-6145 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-6146      TCGA-44-6147      TCGA-44-6148      TCGA-44-6774 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-6775      TCGA-44-6776      TCGA-44-6777      TCGA-44-6778 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-6779      TCGA-49-4486      TCGA-49-4487      TCGA-49-4488 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-49-4494      TCGA-49-4501      TCGA-49-4505      TCGA-49-4506 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-49-4507      TCGA-49-4510      TCGA-49-4512      TCGA-49-4514 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-49-6742      TCGA-49-6743      TCGA-49-6744      TCGA-49-6745 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-49-6767      TCGA-50-5044      TCGA-50-5045      TCGA-50-5049 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5051      TCGA-50-5066      TCGA-50-5068      TCGA-50-5072 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5930      TCGA-50-5931      TCGA-50-5932      TCGA-50-5933 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1596 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6712      TCGA-64-1676 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-64-1677      TCGA-64-1678      TCGA-64-1680      TCGA-64-5774 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-64-5778      TCGA-64-5779      TCGA-64-5781      TCGA-64-5815 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-6215      TCGA-67-6216      TCGA-67-6217 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4658      TCGA-73-4659      TCGA-73-4670 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-73-4675      TCGA-73-4676      TCGA-75-5122      TCGA-75-5125 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-75-6203      TCGA-75-6205      TCGA-75-6206      TCGA-75-6207 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-75-6211      TCGA-75-6212      TCGA-80-5611      TCGA-86-6562 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-91-6836 
"LELP1 WILD-TYPE" 
D143V7, multiclass
        clus
vv       LELP1 MUTATED LELP1 WILD-TYPE
  CLUS_1             1              48
  CLUS_2             2              67
  CLUS_3             0              53
D143V8, multiclass
        clus
vv       LELP1 MUTATED LELP1 WILD-TYPE
  CLUS_1             2              48
  CLUS_2             1              67
  CLUS_3             0              53
D143V9, multiclass
        clus
vv       LELP1 MUTATED LELP1 WILD-TYPE
  CLUS_1             1              58
  CLUS_2             2              78
  CLUS_3             0              29
D143V10, multiclass
        clus
vv       LELP1 MUTATED LELP1 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             2              89
  CLUS_3             1              56
D143V11, multiclass
[1] "Remove cluster labels:" "LELP1 MUTATED"         
clus
  LELP1 MUTATED LELP1 WILD-TYPE 
              2             103 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4396      TCGA-05-4405 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4424      TCGA-05-4425 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4433      TCGA-05-5420      TCGA-05-5423 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-5425      TCGA-05-5428      TCGA-05-5429      TCGA-05-5715 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-35-5375      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-5643      TCGA-44-5645      TCGA-44-6144      TCGA-44-6145 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-6146      TCGA-44-6147      TCGA-44-6148      TCGA-44-6774 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-6775      TCGA-44-6776      TCGA-44-6777      TCGA-44-6778 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-6779      TCGA-49-4487      TCGA-49-4488      TCGA-49-4490 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-49-6767      TCGA-50-5044 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-5774      TCGA-64-5778      TCGA-64-5779 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-4679      TCGA-67-6215 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-73-4676      TCGA-75-5122      TCGA-75-5125      TCGA-75-5126 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-75-5146      TCGA-75-5147      TCGA-75-6203      TCGA-75-6205 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-75-6206      TCGA-75-6207      TCGA-75-6211      TCGA-75-6212 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-80-5611      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
D143V12, multiclass
[1] "Remove cluster labels:" "LELP1 MUTATED"         
clus
  LELP1 MUTATED LELP1 WILD-TYPE 
              2             103 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4396      TCGA-05-4405 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4424      TCGA-05-4425 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4433      TCGA-05-5420      TCGA-05-5423 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-05-5425      TCGA-05-5428      TCGA-05-5429      TCGA-05-5715 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-35-5375      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-5643      TCGA-44-5645      TCGA-44-6144      TCGA-44-6145 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-6146      TCGA-44-6147      TCGA-44-6148      TCGA-44-6774 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-6775      TCGA-44-6776      TCGA-44-6777      TCGA-44-6778 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-44-6779      TCGA-49-4487      TCGA-49-4488      TCGA-49-4490 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-49-6767      TCGA-50-5044 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-5774      TCGA-64-5778      TCGA-64-5779 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-64-5781      TCGA-64-5815      TCGA-67-4679      TCGA-67-6215 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-67-6216      TCGA-67-6217      TCGA-71-6725      TCGA-73-4658 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-73-4676      TCGA-75-5122      TCGA-75-5125      TCGA-75-5126 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-75-5146      TCGA-75-5147      TCGA-75-6203      TCGA-75-6205 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-75-6206      TCGA-75-6207      TCGA-75-6211      TCGA-75-6212 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-80-5611      TCGA-86-6562      TCGA-91-6828      TCGA-91-6829 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 
     TCGA-91-6831      TCGA-91-6835      TCGA-91-6836 
"LELP1 WILD-TYPE" "LELP1 WILD-TYPE" "LELP1 WILD-TYPE" 

Clustering(144) Variable = AOAH MUTATION ANALYSIS
D144V1, multiclass
D144V2, multiclass
D144V3, multiclass
        clus
vv       AOAH MUTATED AOAH WILD-TYPE
  CLUS_1            2             68
  CLUS_2            5             63
  CLUS_3            1             33
D144V4, multiclass
        clus
vv       AOAH MUTATED AOAH WILD-TYPE
  CLUS_1            0             34
  CLUS_2            3             30
  CLUS_3            3             40
D144V5, multiclass
        clus
vv       AOAH MUTATED AOAH WILD-TYPE
  CLUS_1            6             67
  CLUS_2            1             22
  CLUS_3            0             39
D144V6, multiclass
        clus
vv       AOAH MUTATED AOAH WILD-TYPE
  CLUS_1            4             73
  CLUS_2            2             24
  CLUS_3            1             31
D144V7, multiclass
        clus
vv       AOAH MUTATED AOAH WILD-TYPE
  CLUS_1            3             46
  CLUS_2            2             67
  CLUS_3            3             50
D144V8, multiclass
        clus
vv       AOAH MUTATED AOAH WILD-TYPE
  CLUS_1            2             48
  CLUS_2            4             64
  CLUS_3            2             51
D144V9, multiclass
        clus
vv       AOAH MUTATED AOAH WILD-TYPE
  CLUS_1            3             56
  CLUS_2            5             75
  CLUS_3            0             29
D144V10, multiclass
        clus
vv       AOAH MUTATED AOAH WILD-TYPE
  CLUS_1            0             20
  CLUS_2            6             85
  CLUS_3            2             55
D144V11, multiclass
        clus
vv       AOAH MUTATED AOAH WILD-TYPE
  CLUS_1            3             43
  CLUS_2            2             33
  CLUS_3            1             23
D144V12, multiclass
        clus
vv       AOAH MUTATED AOAH WILD-TYPE
  CLUS_1            1             10
  CLUS_2            2             44
  CLUS_3            3             45

Clustering(145) Variable = GRK5 MUTATION ANALYSIS
D145V1, multiclass
[1] "Remove cluster labels:" "GRK5 MUTATED"          
clus
  GRK5 MUTATED GRK5 WILD-TYPE 
             2             30 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2656 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2659     TCGA-44-2661     TCGA-44-2662 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-44-2665     TCGA-44-2666     TCGA-44-3398     TCGA-44-3918 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-44-3919     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-55-1596     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-64-1680     TCGA-67-3770     TCGA-67-3771     TCGA-67-3772 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-67-3773     TCGA-67-3774 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
D145V2, multiclass
[1] "Remove cluster labels:" "GRK5 MUTATED"          
clus
  GRK5 MUTATED GRK5 WILD-TYPE 
             2             30 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2656 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2659     TCGA-44-2661     TCGA-44-2662 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-44-2665     TCGA-44-2666     TCGA-44-3398     TCGA-44-3918 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-44-3919     TCGA-55-1592     TCGA-55-1594     TCGA-55-1595 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-55-1596     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-64-1680     TCGA-67-3770     TCGA-67-3771     TCGA-67-3772 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
    TCGA-67-3773     TCGA-67-3774 
"GRK5 WILD-TYPE" "GRK5 WILD-TYPE" 
D145V3, multiclass
        clus
vv       GRK5 MUTATED GRK5 WILD-TYPE
  CLUS_1            4             66
  CLUS_2            2             66
  CLUS_3            1             33
D145V4, multiclass
        clus
vv       GRK5 MUTATED GRK5 WILD-TYPE
  CLUS_1            3             31
  CLUS_2            3             30
  CLUS_3            1             42
D145V5, multiclass
        clus
vv       GRK5 MUTATED GRK5 WILD-TYPE
  CLUS_1            3             70
  CLUS_2            1             22
  CLUS_3            2             37
D145V6, multiclass
        clus
vv       GRK5 MUTATED GRK5 WILD-TYPE
  CLUS_1            3             74
  CLUS_2            1             25
  CLUS_3            2             30
D145V7, multiclass
        clus
vv       GRK5 MUTATED GRK5 WILD-TYPE
  CLUS_1            1             48
  CLUS_2            3             66
  CLUS_3            3             50
D145V8, multiclass
        clus
vv       GRK5 MUTATED GRK5 WILD-TYPE
  CLUS_1            2             48
  CLUS_2            3             65
  CLUS_3            2             51
D145V9, multiclass
        clus
vv       GRK5 MUTATED GRK5 WILD-TYPE
  CLUS_1            4             55
  CLUS_2            3             77
  CLUS_3            0             29
D145V10, multiclass
        clus
vv       GRK5 MUTATED GRK5 WILD-TYPE
  CLUS_1            0             20
  CLUS_2            3             88
  CLUS_3            4             53
D145V11, multiclass
        clus
vv       GRK5 MUTATED GRK5 WILD-TYPE
  CLUS_1            2             44
  CLUS_2            1             34
  CLUS_3            2             22
D145V12, multiclass
        clus
vv       GRK5 MUTATED GRK5 WILD-TYPE
  CLUS_1            1             10
  CLUS_2            2             44
  CLUS_3            2             46

Clustering(146) Variable = FCRL4 MUTATION ANALYSIS
D146V1, multiclass
[1] "Remove cluster labels:" "FCRL4 MUTATED"         
clus
  FCRL4 MUTATED FCRL4 WILD-TYPE 
              2              30 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2657 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3772 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-67-3773      TCGA-67-3774 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
D146V2, multiclass
[1] "Remove cluster labels:" "FCRL4 MUTATED"         
clus
  FCRL4 MUTATED FCRL4 WILD-TYPE 
              2              30 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2657 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3772 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
     TCGA-67-3773      TCGA-67-3774 
"FCRL4 WILD-TYPE" "FCRL4 WILD-TYPE" 
D146V3, multiclass
        clus
vv       FCRL4 MUTATED FCRL4 WILD-TYPE
  CLUS_1             3              67
  CLUS_2             3              65
  CLUS_3             1              33
D146V4, multiclass
        clus
vv       FCRL4 MUTATED FCRL4 WILD-TYPE
  CLUS_1             1              33
  CLUS_2             3              30
  CLUS_3             0              43
D146V5, multiclass
        clus
vv       FCRL4 MUTATED FCRL4 WILD-TYPE
  CLUS_1             3              70
  CLUS_2             2              21
  CLUS_3             1              38
D146V6, multiclass
        clus
vv       FCRL4 MUTATED FCRL4 WILD-TYPE
  CLUS_1             1              76
  CLUS_2             3              23
  CLUS_3             2              30
D146V7, multiclass
        clus
vv       FCRL4 MUTATED FCRL4 WILD-TYPE
  CLUS_1             2              47
  CLUS_2             2              67
  CLUS_3             2              51
D146V8, multiclass
        clus
vv       FCRL4 MUTATED FCRL4 WILD-TYPE
  CLUS_1             2              48
  CLUS_2             3              65
  CLUS_3             1              52
D146V9, multiclass
        clus
vv       FCRL4 MUTATED FCRL4 WILD-TYPE
  CLUS_1             2              57
  CLUS_2             4              76
  CLUS_3             1              28
D146V10, multiclass
        clus
vv       FCRL4 MUTATED FCRL4 WILD-TYPE
  CLUS_1             1              19
  CLUS_2             6              85
  CLUS_3             0              57
D146V11, multiclass
        clus
vv       FCRL4 MUTATED FCRL4 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             1              34
  CLUS_3             1              23
D146V12, multiclass
        clus
vv       FCRL4 MUTATED FCRL4 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             2              44
  CLUS_3             1              47

Clustering(147) Variable = NT5DC3 MUTATION ANALYSIS
D147V1, multiclass
[1] "Remove cluster labels:" "NT5DC3 MUTATED"        
clus
  NT5DC3 MUTATED NT5DC3 WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-35-3615       TCGA-35-4122 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-35-4123       TCGA-44-2655       TCGA-44-2656       TCGA-44-2657 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-44-2659       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3398       TCGA-44-3918 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
D147V2, multiclass
[1] "Remove cluster labels:" "NT5DC3 MUTATED"        
clus
  NT5DC3 MUTATED NT5DC3 WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-35-3615       TCGA-35-4122 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-35-4123       TCGA-44-2655       TCGA-44-2656       TCGA-44-2657 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-44-2659       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3398       TCGA-44-3918 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" "NT5DC3 WILD-TYPE" 
D147V3, multiclass
        clus
vv       NT5DC3 MUTATED NT5DC3 WILD-TYPE
  CLUS_1              1               69
  CLUS_2              3               65
  CLUS_3              1               33
D147V4, multiclass
        clus
vv       NT5DC3 MUTATED NT5DC3 WILD-TYPE
  CLUS_1              1               33
  CLUS_2              2               31
  CLUS_3              1               42
D147V5, multiclass
        clus
vv       NT5DC3 MUTATED NT5DC3 WILD-TYPE
  CLUS_1              5               68
  CLUS_2              0               23
  CLUS_3              0               39
D147V6, multiclass
        clus
vv       NT5DC3 MUTATED NT5DC3 WILD-TYPE
  CLUS_1              4               73
  CLUS_2              1               25
  CLUS_3              0               32
D147V7, multiclass
        clus
vv       NT5DC3 MUTATED NT5DC3 WILD-TYPE
  CLUS_1              1               48
  CLUS_2              3               66
  CLUS_3              1               52
D147V8, multiclass
        clus
vv       NT5DC3 MUTATED NT5DC3 WILD-TYPE
  CLUS_1              1               49
  CLUS_2              4               64
  CLUS_3              0               53
D147V9, multiclass
        clus
vv       NT5DC3 MUTATED NT5DC3 WILD-TYPE
  CLUS_1              3               56
  CLUS_2              2               78
  CLUS_3              0               29
D147V10, multiclass
        clus
vv       NT5DC3 MUTATED NT5DC3 WILD-TYPE
  CLUS_1              0               20
  CLUS_2              2               89
  CLUS_3              3               54
D147V11, multiclass
        clus
vv       NT5DC3 MUTATED NT5DC3 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              2               33
  CLUS_3              0               24
D147V12, multiclass
        clus
vv       NT5DC3 MUTATED NT5DC3 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              2               44
  CLUS_3              2               46

Clustering(148) Variable = NAALAD2 MUTATION ANALYSIS
D148V1, multiclass
[1] "Remove cluster labels:" "NAALAD2 MUTATED"       
clus
  NAALAD2 MUTATED NAALAD2 WILD-TYPE 
                1                31 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2656 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3398        TCGA-44-3918 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-55-1592        TCGA-55-1594 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-64-1676        TCGA-64-1677 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1680        TCGA-67-3770        TCGA-67-3771 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
D148V2, multiclass
[1] "Remove cluster labels:" "NAALAD2 MUTATED"       
clus
  NAALAD2 MUTATED NAALAD2 WILD-TYPE 
                1                31 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2656 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3398        TCGA-44-3918 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-55-1592        TCGA-55-1594 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-64-1676        TCGA-64-1677 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1680        TCGA-67-3770        TCGA-67-3771 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
D148V3, multiclass
        clus
vv       NAALAD2 MUTATED NAALAD2 WILD-TYPE
  CLUS_1               4                66
  CLUS_2               3                65
  CLUS_3               2                32
D148V4, multiclass
        clus
vv       NAALAD2 MUTATED NAALAD2 WILD-TYPE
  CLUS_1               1                33
  CLUS_2               2                31
  CLUS_3               3                40
D148V5, multiclass
        clus
vv       NAALAD2 MUTATED NAALAD2 WILD-TYPE
  CLUS_1               2                71
  CLUS_2               0                23
  CLUS_3               3                36
D148V6, multiclass
        clus
vv       NAALAD2 MUTATED NAALAD2 WILD-TYPE
  CLUS_1               3                74
  CLUS_2               0                26
  CLUS_3               2                30
D148V7, multiclass
        clus
vv       NAALAD2 MUTATED NAALAD2 WILD-TYPE
  CLUS_1               0                49
  CLUS_2               7                62
  CLUS_3               2                51
D148V8, multiclass
        clus
vv       NAALAD2 MUTATED NAALAD2 WILD-TYPE
  CLUS_1               5                45
  CLUS_2               2                66
  CLUS_3               2                51
D148V9, multiclass
        clus
vv       NAALAD2 MUTATED NAALAD2 WILD-TYPE
  CLUS_1               0                59
  CLUS_2               8                72
  CLUS_3               1                28
D148V10, multiclass
        clus
vv       NAALAD2 MUTATED NAALAD2 WILD-TYPE
  CLUS_1               1                19
  CLUS_2               8                83
  CLUS_3               0                57
D148V11, multiclass
        clus
vv       NAALAD2 MUTATED NAALAD2 WILD-TYPE
  CLUS_1               2                44
  CLUS_2               3                32
  CLUS_3               1                23
D148V12, multiclass
        clus
vv       NAALAD2 MUTATED NAALAD2 WILD-TYPE
  CLUS_1               1                10
  CLUS_2               5                41
  CLUS_3               0                48

Clustering(149) Variable = C8ORF37 MUTATION ANALYSIS
D149V1, multiclass
D149V2, multiclass
D149V3, multiclass
        clus
vv       C8ORF37 MUTATED C8ORF37 WILD-TYPE
  CLUS_1               4                66
  CLUS_2               2                66
  CLUS_3               0                34
D149V4, multiclass
        clus
vv       C8ORF37 MUTATED C8ORF37 WILD-TYPE
  CLUS_1               1                33
  CLUS_2               4                29
  CLUS_3               1                42
D149V5, multiclass
        clus
vv       C8ORF37 MUTATED C8ORF37 WILD-TYPE
  CLUS_1               4                69
  CLUS_2               0                23
  CLUS_3               1                38
D149V6, multiclass
        clus
vv       C8ORF37 MUTATED C8ORF37 WILD-TYPE
  CLUS_1               4                73
  CLUS_2               1                25
  CLUS_3               0                32
D149V7, multiclass
        clus
vv       C8ORF37 MUTATED C8ORF37 WILD-TYPE
  CLUS_1               2                47
  CLUS_2               2                67
  CLUS_3               2                51
D149V8, multiclass
        clus
vv       C8ORF37 MUTATED C8ORF37 WILD-TYPE
  CLUS_1               1                49
  CLUS_2               4                64
  CLUS_3               1                52
D149V9, multiclass
        clus
vv       C8ORF37 MUTATED C8ORF37 WILD-TYPE
  CLUS_1               1                58
  CLUS_2               5                75
  CLUS_3               0                29
D149V10, multiclass
        clus
vv       C8ORF37 MUTATED C8ORF37 WILD-TYPE
  CLUS_1               0                20
  CLUS_2               4                87
  CLUS_3               2                55
D149V11, multiclass
        clus
vv       C8ORF37 MUTATED C8ORF37 WILD-TYPE
  CLUS_1               4                42
  CLUS_2               1                34
  CLUS_3               1                23
D149V12, multiclass
        clus
vv       C8ORF37 MUTATED C8ORF37 WILD-TYPE
  CLUS_1               0                11
  CLUS_2               3                43
  CLUS_3               3                45

Clustering(150) Variable = XIRP2 MUTATION ANALYSIS
D150V1, multiclass
        clus
vv       XIRP2 MUTATED XIRP2 WILD-TYPE
  CLUS_1             0               5
  CLUS_2             2               7
  CLUS_3             2              10
  CLUS_4             3               3
D150V2, multiclass
        clus
vv       XIRP2 MUTATED XIRP2 WILD-TYPE
  CLUS_1             3               4
  CLUS_2             2              11
  CLUS_3             2              10
D150V3, multiclass
        clus
vv       XIRP2 MUTATED XIRP2 WILD-TYPE
  CLUS_1            18              52
  CLUS_2            19              49
  CLUS_3            10              24
D150V4, multiclass
        clus
vv       XIRP2 MUTATED XIRP2 WILD-TYPE
  CLUS_1            11              23
  CLUS_2            12              21
  CLUS_3            12              31
D150V5, multiclass
        clus
vv       XIRP2 MUTATED XIRP2 WILD-TYPE
  CLUS_1            21              52
  CLUS_2             3              20
  CLUS_3            10              29
D150V6, multiclass
        clus
vv       XIRP2 MUTATED XIRP2 WILD-TYPE
  CLUS_1            23              54
  CLUS_2             5              21
  CLUS_3             6              26
D150V7, multiclass
        clus
vv       XIRP2 MUTATED XIRP2 WILD-TYPE
  CLUS_1             8              41
  CLUS_2            23              46
  CLUS_3            16              37
D150V8, multiclass
        clus
vv       XIRP2 MUTATED XIRP2 WILD-TYPE
  CLUS_1            17              33
  CLUS_2            11              57
  CLUS_3            19              34
D150V9, multiclass
        clus
vv       XIRP2 MUTATED XIRP2 WILD-TYPE
  CLUS_1            14              45
  CLUS_2            25              55
  CLUS_3             7              22
D150V10, multiclass
        clus
vv       XIRP2 MUTATED XIRP2 WILD-TYPE
  CLUS_1             3              17
  CLUS_2            29              62
  CLUS_3            14              43
D150V11, multiclass
        clus
vv       XIRP2 MUTATED XIRP2 WILD-TYPE
  CLUS_1            14              32
  CLUS_2            11              24
  CLUS_3             7              17
D150V12, multiclass
        clus
vv       XIRP2 MUTATED XIRP2 WILD-TYPE
  CLUS_1             2               9
  CLUS_2            16              30
  CLUS_3            14              34

Clustering(151) Variable = PTH MUTATION ANALYSIS
D151V1, multiclass
[1] "Remove cluster labels:" "PTH MUTATED"           
clus
  PTH MUTATED PTH WILD-TYPE 
            1            31 
   TCGA-05-4244    TCGA-05-4249    TCGA-05-4250    TCGA-35-3615    TCGA-35-4122 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-35-4123    TCGA-44-2655    TCGA-44-2656    TCGA-44-2659    TCGA-44-2661 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-2662    TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3398 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-55-1592    TCGA-55-1594 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-64-1680    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-67-3774 
"PTH WILD-TYPE" 
D151V2, multiclass
[1] "Remove cluster labels:" "PTH MUTATED"           
clus
  PTH MUTATED PTH WILD-TYPE 
            1            31 
   TCGA-05-4244    TCGA-05-4249    TCGA-05-4250    TCGA-35-3615    TCGA-35-4122 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-35-4123    TCGA-44-2655    TCGA-44-2656    TCGA-44-2659    TCGA-44-2661 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-2662    TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3398 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-55-1592    TCGA-55-1594 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-64-1680    TCGA-67-3770    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-67-3774 
"PTH WILD-TYPE" 
D151V3, multiclass
        clus
vv       PTH MUTATED PTH WILD-TYPE
  CLUS_1           1            69
  CLUS_2           1            67
  CLUS_3           1            33
D151V4, multiclass
[1] "Remove cluster labels:" "PTH MUTATED"           
clus
  PTH MUTATED PTH WILD-TYPE 
            1           109 
   TCGA-05-4384    TCGA-05-4390    TCGA-05-4396    TCGA-05-4405    TCGA-05-4410 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4417    TCGA-05-4424    TCGA-05-4425    TCGA-05-4427    TCGA-05-4433 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428    TCGA-05-5429 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-5715    TCGA-35-5375    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3918 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-4112    TCGA-44-5643    TCGA-44-5645    TCGA-44-6144    TCGA-44-6145 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6146    TCGA-44-6147    TCGA-44-6148    TCGA-44-6774    TCGA-44-6775 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6776    TCGA-44-6777    TCGA-44-6778    TCGA-44-6779    TCGA-49-4487 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-4488    TCGA-49-4490    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-6743    TCGA-49-6744    TCGA-49-6745    TCGA-49-6767    TCGA-50-5044 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5045    TCGA-50-5049    TCGA-50-5051    TCGA-50-5055    TCGA-50-5066 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5068    TCGA-50-5072    TCGA-50-5930    TCGA-50-5931    TCGA-50-5932 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5933    TCGA-50-5935    TCGA-50-5936    TCGA-50-5939    TCGA-50-5941 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5942    TCGA-50-5944    TCGA-50-5946    TCGA-50-6590    TCGA-50-6591 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-6592    TCGA-50-6593    TCGA-50-6594    TCGA-50-6595    TCGA-50-6597 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-55-5899    TCGA-55-6543    TCGA-55-6642    TCGA-55-6712    TCGA-64-5774 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781    TCGA-64-5815 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-67-4679    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4676    TCGA-75-5122    TCGA-75-5125    TCGA-75-5126 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-75-5146    TCGA-75-5147    TCGA-75-6203    TCGA-75-6205    TCGA-75-6207 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-75-6211    TCGA-75-6212    TCGA-80-5611    TCGA-86-6562    TCGA-91-6828 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
D151V5, multiclass
[1] "Remove cluster labels:" "PTH MUTATED"           
clus
  PTH MUTATED PTH WILD-TYPE 
            2           133 
   TCGA-05-4244    TCGA-05-4249    TCGA-05-4250    TCGA-05-4384    TCGA-05-4396 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405    TCGA-05-4410 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4422    TCGA-05-4426 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4434    TCGA-05-5420    TCGA-05-5423 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-5425    TCGA-05-5429    TCGA-05-5715    TCGA-35-3615    TCGA-35-4122 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-35-4123    TCGA-35-5375    TCGA-38-4625    TCGA-38-4626    TCGA-38-4627 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-38-4629    TCGA-38-6178    TCGA-44-2656    TCGA-44-2661    TCGA-44-2665 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-2668    TCGA-44-3396    TCGA-44-3398    TCGA-44-3918    TCGA-44-3919 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-4112    TCGA-44-5643    TCGA-44-5645    TCGA-44-6144    TCGA-44-6145 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6146    TCGA-44-6147    TCGA-44-6148    TCGA-44-6774    TCGA-44-6775 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6776    TCGA-44-6777    TCGA-44-6778    TCGA-44-6779    TCGA-49-4486 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-4487    TCGA-49-4488    TCGA-49-4494    TCGA-49-4501    TCGA-49-4506 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-4507    TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-6743    TCGA-49-6744    TCGA-49-6745    TCGA-49-6767    TCGA-50-5044 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5045    TCGA-50-5049    TCGA-50-5051    TCGA-50-5066    TCGA-50-5068 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5072    TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6712    TCGA-64-1676 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-64-1677    TCGA-64-1678    TCGA-64-1680    TCGA-64-5774    TCGA-64-5778 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-64-5779    TCGA-64-5781    TCGA-64-5815    TCGA-67-3771    TCGA-67-6215 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-67-6216    TCGA-67-6217    TCGA-71-6725    TCGA-73-4658    TCGA-73-4659 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-75-5122    TCGA-75-5125 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-75-6203    TCGA-75-6205    TCGA-75-6206    TCGA-75-6207    TCGA-75-6211 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-75-6212    TCGA-80-5611    TCGA-86-6562    TCGA-91-6828    TCGA-91-6829 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
D151V6, multiclass
[1] "Remove cluster labels:" "PTH MUTATED"           
clus
  PTH MUTATED PTH WILD-TYPE 
            2           133 
   TCGA-05-4244    TCGA-05-4249    TCGA-05-4250    TCGA-05-4384    TCGA-05-4396 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405    TCGA-05-4410 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4422    TCGA-05-4426 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4434    TCGA-05-5420    TCGA-05-5423 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-5425    TCGA-05-5429    TCGA-05-5715    TCGA-35-3615    TCGA-35-4122 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-35-4123    TCGA-35-5375    TCGA-38-4625    TCGA-38-4626    TCGA-38-4627 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-38-4629    TCGA-38-6178    TCGA-44-2656    TCGA-44-2661    TCGA-44-2665 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-2668    TCGA-44-3396    TCGA-44-3398    TCGA-44-3918    TCGA-44-3919 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-4112    TCGA-44-5643    TCGA-44-5645    TCGA-44-6144    TCGA-44-6145 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6146    TCGA-44-6147    TCGA-44-6148    TCGA-44-6774    TCGA-44-6775 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6776    TCGA-44-6777    TCGA-44-6778    TCGA-44-6779    TCGA-49-4486 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-4487    TCGA-49-4488    TCGA-49-4494    TCGA-49-4501    TCGA-49-4506 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-4507    TCGA-49-4510    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-6743    TCGA-49-6744    TCGA-49-6745    TCGA-49-6767    TCGA-50-5044 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5045    TCGA-50-5049    TCGA-50-5051    TCGA-50-5066    TCGA-50-5068 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5072    TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942    TCGA-50-5944 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592    TCGA-50-6593 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592    TCGA-55-1594 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6712    TCGA-64-1676 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-64-1677    TCGA-64-1678    TCGA-64-1680    TCGA-64-5774    TCGA-64-5778 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-64-5779    TCGA-64-5781    TCGA-64-5815    TCGA-67-3771    TCGA-67-6215 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-67-6216    TCGA-67-6217    TCGA-71-6725    TCGA-73-4658    TCGA-73-4659 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-75-5122    TCGA-75-5125 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-75-6203    TCGA-75-6205    TCGA-75-6206    TCGA-75-6207    TCGA-75-6211 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-75-6212    TCGA-80-5611    TCGA-86-6562    TCGA-91-6828    TCGA-91-6829 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
D151V7, multiclass
        clus
vv       PTH MUTATED PTH WILD-TYPE
  CLUS_1           1            48
  CLUS_2           1            68
  CLUS_3           1            52
D151V8, multiclass
        clus
vv       PTH MUTATED PTH WILD-TYPE
  CLUS_1           1            49
  CLUS_2           1            67
  CLUS_3           1            52
D151V9, multiclass
        clus
vv       PTH MUTATED PTH WILD-TYPE
  CLUS_1           2            57
  CLUS_2           1            79
  CLUS_3           0            29
D151V10, multiclass
        clus
vv       PTH MUTATED PTH WILD-TYPE
  CLUS_1           0            20
  CLUS_2           1            90
  CLUS_3           2            55
D151V11, multiclass
[1] "Remove cluster labels:" "PTH MUTATED"           
clus
  PTH MUTATED PTH WILD-TYPE 
            1           104 
   TCGA-05-4384    TCGA-05-4390    TCGA-05-4396    TCGA-05-4405    TCGA-05-4410 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4417    TCGA-05-4424    TCGA-05-4425    TCGA-05-4427    TCGA-05-4433 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428    TCGA-05-5429 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-5715    TCGA-35-5375    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-5643    TCGA-44-5645    TCGA-44-6144    TCGA-44-6145    TCGA-44-6146 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6147    TCGA-44-6148    TCGA-44-6774    TCGA-44-6775    TCGA-44-6776 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6777    TCGA-44-6778    TCGA-44-6779    TCGA-49-4487    TCGA-49-4488 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-4490    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-49-6767    TCGA-50-5044    TCGA-50-5045 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5049    TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5072    TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5935    TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5944    TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-6593    TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-5899 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-55-6543    TCGA-55-6642    TCGA-55-6712    TCGA-64-5774    TCGA-64-5775 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-64-5778    TCGA-64-5779    TCGA-64-5781    TCGA-64-5815    TCGA-67-4679 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725    TCGA-73-4658 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-73-4676    TCGA-75-5122    TCGA-75-5125    TCGA-75-5126    TCGA-75-5146 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-75-5147    TCGA-75-6203    TCGA-75-6205    TCGA-75-6206    TCGA-75-6207 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-75-6211    TCGA-75-6212    TCGA-80-5611    TCGA-86-6562    TCGA-91-6828 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
D151V12, multiclass
[1] "Remove cluster labels:" "PTH MUTATED"           
clus
  PTH MUTATED PTH WILD-TYPE 
            1           104 
   TCGA-05-4384    TCGA-05-4390    TCGA-05-4396    TCGA-05-4405    TCGA-05-4410 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-4417    TCGA-05-4424    TCGA-05-4425    TCGA-05-4427    TCGA-05-4433 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428    TCGA-05-5429 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-05-5715    TCGA-35-5375    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-5643    TCGA-44-5645    TCGA-44-6144    TCGA-44-6145    TCGA-44-6146 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6147    TCGA-44-6148    TCGA-44-6774    TCGA-44-6775    TCGA-44-6776 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-44-6777    TCGA-44-6778    TCGA-44-6779    TCGA-49-4487    TCGA-49-4488 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-4490    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-49-6767    TCGA-50-5044    TCGA-50-5045 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5049    TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5072    TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5935    TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-5944    TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-50-6593    TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-5899 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-55-6543    TCGA-55-6642    TCGA-55-6712    TCGA-64-5774    TCGA-64-5775 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-64-5778    TCGA-64-5779    TCGA-64-5781    TCGA-64-5815    TCGA-67-4679 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725    TCGA-73-4658 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-73-4676    TCGA-75-5122    TCGA-75-5125    TCGA-75-5126    TCGA-75-5146 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-75-5147    TCGA-75-6203    TCGA-75-6205    TCGA-75-6206    TCGA-75-6207 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-75-6211    TCGA-75-6212    TCGA-80-5611    TCGA-86-6562    TCGA-91-6828 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 
   TCGA-91-6829    TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" "PTH WILD-TYPE" 

Clustering(152) Variable = STAC3 MUTATION ANALYSIS
D152V1, multiclass
D152V2, multiclass
D152V3, multiclass
        clus
vv       STAC3 MUTATED STAC3 WILD-TYPE
  CLUS_1             1              69
  CLUS_2             2              66
  CLUS_3             0              34
D152V4, multiclass
[1] "Remove cluster labels:" "STAC3 MUTATED"         
clus
  STAC3 MUTATED STAC3 WILD-TYPE 
              2             108 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4405      TCGA-05-4410 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4424      TCGA-05-4425 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4433      TCGA-05-5420      TCGA-05-5423 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-5425      TCGA-05-5428      TCGA-05-5429      TCGA-05-5715 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-35-5375      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-2656      TCGA-44-2665      TCGA-44-2666      TCGA-44-2668 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-3918      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4487 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4512      TCGA-49-4514 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-6742      TCGA-49-6743      TCGA-49-6744      TCGA-49-6745 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-6767      TCGA-50-5044      TCGA-50-5045      TCGA-50-5049 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5051      TCGA-50-5055      TCGA-50-5066      TCGA-50-5068 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5072      TCGA-50-5930      TCGA-50-5931      TCGA-50-5932 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5933      TCGA-50-5935      TCGA-50-5936      TCGA-50-5939 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5941      TCGA-50-5942      TCGA-50-5944      TCGA-50-5946 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-6590      TCGA-50-6591      TCGA-50-6592      TCGA-50-6593 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-6594      TCGA-50-6595      TCGA-50-6597      TCGA-55-5899 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-55-6543      TCGA-55-6642      TCGA-55-6712      TCGA-64-5774 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-64-5775      TCGA-64-5778      TCGA-64-5779      TCGA-64-5781 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-64-5815      TCGA-67-4679      TCGA-67-6215      TCGA-67-6216 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-67-6217      TCGA-71-6725      TCGA-73-4658      TCGA-73-4676 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-75-5122      TCGA-75-5125      TCGA-75-5126      TCGA-75-5146 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-75-5147      TCGA-75-6203      TCGA-75-6205      TCGA-75-6207 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-75-6211      TCGA-75-6212      TCGA-80-5611      TCGA-86-6562 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
D152V5, multiclass
        clus
vv       STAC3 MUTATED STAC3 WILD-TYPE
  CLUS_1             2              71
  CLUS_2             0              23
  CLUS_3             1              38
D152V6, multiclass
        clus
vv       STAC3 MUTATED STAC3 WILD-TYPE
  CLUS_1             1              76
  CLUS_2             1              25
  CLUS_3             1              31
D152V7, multiclass
        clus
vv       STAC3 MUTATED STAC3 WILD-TYPE
  CLUS_1             1              48
  CLUS_2             1              68
  CLUS_3             1              52
D152V8, multiclass
        clus
vv       STAC3 MUTATED STAC3 WILD-TYPE
  CLUS_1             1              49
  CLUS_2             2              66
  CLUS_3             0              53
D152V9, multiclass
        clus
vv       STAC3 MUTATED STAC3 WILD-TYPE
  CLUS_1             0              59
  CLUS_2             3              77
  CLUS_3             0              29
D152V10, multiclass
        clus
vv       STAC3 MUTATED STAC3 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             3              88
  CLUS_3             0              57
D152V11, multiclass
[1] "Remove cluster labels:" "STAC3 MUTATED"         
clus
  STAC3 MUTATED STAC3 WILD-TYPE 
              2             103 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4405      TCGA-05-4410 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4424      TCGA-05-4425 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4433      TCGA-05-5420      TCGA-05-5423 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-5425      TCGA-05-5428      TCGA-05-5429      TCGA-05-5715 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-35-5375      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-5643      TCGA-44-5645      TCGA-44-6144      TCGA-44-6145 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6146      TCGA-44-6147      TCGA-44-6148      TCGA-44-6774 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6775      TCGA-44-6776      TCGA-44-6777      TCGA-44-6778 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6779      TCGA-49-4487      TCGA-49-4488      TCGA-49-4490 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-49-6767      TCGA-50-5044 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-4679 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4676      TCGA-75-5122      TCGA-75-5125 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-75-5126      TCGA-75-5146      TCGA-75-5147      TCGA-75-6203 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-75-6205      TCGA-75-6206      TCGA-75-6207      TCGA-75-6211 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-75-6212      TCGA-80-5611      TCGA-86-6562      TCGA-91-6828 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
D152V12, multiclass
[1] "Remove cluster labels:" "STAC3 MUTATED"         
clus
  STAC3 MUTATED STAC3 WILD-TYPE 
              2             103 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4405      TCGA-05-4410 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4415      TCGA-05-4417      TCGA-05-4424      TCGA-05-4425 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-4427      TCGA-05-4433      TCGA-05-5420      TCGA-05-5423 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-05-5425      TCGA-05-5428      TCGA-05-5429      TCGA-05-5715 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-35-5375      TCGA-38-4631      TCGA-38-4632      TCGA-38-6178 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-5643      TCGA-44-5645      TCGA-44-6144      TCGA-44-6145 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6146      TCGA-44-6147      TCGA-44-6148      TCGA-44-6774 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6775      TCGA-44-6776      TCGA-44-6777      TCGA-44-6778 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-44-6779      TCGA-49-4487      TCGA-49-4488      TCGA-49-4490 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-4512      TCGA-49-4514      TCGA-49-6742      TCGA-49-6743 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-49-6744      TCGA-49-6745      TCGA-49-6767      TCGA-50-5044 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5045      TCGA-50-5049      TCGA-50-5051      TCGA-50-5055 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5066      TCGA-50-5068      TCGA-50-5072      TCGA-50-5930 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5931      TCGA-50-5932      TCGA-50-5933      TCGA-50-5935 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-5899      TCGA-55-6543      TCGA-55-6642 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-55-6712      TCGA-64-5774      TCGA-64-5775      TCGA-64-5778 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-64-5779      TCGA-64-5781      TCGA-64-5815      TCGA-67-4679 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-67-6215      TCGA-67-6216      TCGA-67-6217      TCGA-71-6725 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-73-4658      TCGA-73-4676      TCGA-75-5122      TCGA-75-5125 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-75-5126      TCGA-75-5146      TCGA-75-5147      TCGA-75-6203 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-75-6205      TCGA-75-6206      TCGA-75-6207      TCGA-75-6211 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-75-6212      TCGA-80-5611      TCGA-86-6562      TCGA-91-6828 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 
     TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"STAC3 WILD-TYPE" "STAC3 WILD-TYPE" "STAC3 WILD-TYPE" 

Clustering(153) Variable = IL18RAP MUTATION ANALYSIS
D153V1, multiclass
[1] "Remove cluster labels:" "IL18RAP MUTATED"       
clus
  IL18RAP MUTATED IL18RAP WILD-TYPE 
                1                31 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2656 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-3398        TCGA-44-3918 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-55-1592        TCGA-55-1594 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-64-1676        TCGA-64-1677 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1680        TCGA-67-3770        TCGA-67-3771 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
D153V2, multiclass
[1] "Remove cluster labels:" "IL18RAP MUTATED"       
clus
  IL18RAP MUTATED IL18RAP WILD-TYPE 
                1                31 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2656 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-3398        TCGA-44-3918 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-55-1592        TCGA-55-1594 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-64-1676        TCGA-64-1677 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1680        TCGA-67-3770        TCGA-67-3771 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" "IL18RAP WILD-TYPE" 
D153V3, multiclass
        clus
vv       IL18RAP MUTATED IL18RAP WILD-TYPE
  CLUS_1               1                69
  CLUS_2               3                65
  CLUS_3               1                33
D153V4, multiclass
        clus
vv       IL18RAP MUTATED IL18RAP WILD-TYPE
  CLUS_1               1                33
  CLUS_2               1                32
  CLUS_3               2                41
D153V5, multiclass
        clus
vv       IL18RAP MUTATED IL18RAP WILD-TYPE
  CLUS_1               2                71
  CLUS_2               0                23
  CLUS_3               2                37
D153V6, multiclass
        clus
vv       IL18RAP MUTATED IL18RAP WILD-TYPE
  CLUS_1               3                74
  CLUS_2               0                26
  CLUS_3               1                31
D153V7, multiclass
        clus
vv       IL18RAP MUTATED IL18RAP WILD-TYPE
  CLUS_1               1                48
  CLUS_2               2                67
  CLUS_3               2                51
D153V8, multiclass
        clus
vv       IL18RAP MUTATED IL18RAP WILD-TYPE
  CLUS_1               2                48
  CLUS_2               1                67
  CLUS_3               2                51
D153V9, multiclass
        clus
vv       IL18RAP MUTATED IL18RAP WILD-TYPE
  CLUS_1               1                58
  CLUS_2               4                76
  CLUS_3               0                29
D153V10, multiclass
        clus
vv       IL18RAP MUTATED IL18RAP WILD-TYPE
  CLUS_1               0                20
  CLUS_2               4                87
  CLUS_3               1                56
D153V11, multiclass
        clus
vv       IL18RAP MUTATED IL18RAP WILD-TYPE
  CLUS_1               1                45
  CLUS_2               2                33
  CLUS_3               0                24
D153V12, multiclass
        clus
vv       IL18RAP MUTATED IL18RAP WILD-TYPE
  CLUS_1               0                11
  CLUS_2               2                44
  CLUS_3               1                47

Clustering(154) Variable = TAAR5 MUTATION ANALYSIS
D154V1, multiclass
[1] "Remove cluster labels:" "TAAR5 MUTATED"         
clus
  TAAR5 MUTATED TAAR5 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-35-4122      TCGA-44-2655      TCGA-44-2656      TCGA-44-2657 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
D154V2, multiclass
[1] "Remove cluster labels:" "TAAR5 MUTATED"         
clus
  TAAR5 MUTATED TAAR5 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-35-4122      TCGA-44-2655      TCGA-44-2656      TCGA-44-2657 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1676      TCGA-64-1677 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" "TAAR5 WILD-TYPE" 
D154V3, multiclass
        clus
vv       TAAR5 MUTATED TAAR5 WILD-TYPE
  CLUS_1             1              69
  CLUS_2             2              66
  CLUS_3             4              30
D154V4, multiclass
        clus
vv       TAAR5 MUTATED TAAR5 WILD-TYPE
  CLUS_1             1              33
  CLUS_2             1              32
  CLUS_3             1              42
D154V5, multiclass
        clus
vv       TAAR5 MUTATED TAAR5 WILD-TYPE
  CLUS_1             0              73
  CLUS_2             1              22
  CLUS_3             4              35
D154V6, multiclass
        clus
vv       TAAR5 MUTATED TAAR5 WILD-TYPE
  CLUS_1             2              75
  CLUS_2             1              25
  CLUS_3             2              30
D154V7, multiclass
        clus
vv       TAAR5 MUTATED TAAR5 WILD-TYPE
  CLUS_1             1              48
  CLUS_2             4              65
  CLUS_3             2              51
D154V8, multiclass
        clus
vv       TAAR5 MUTATED TAAR5 WILD-TYPE
  CLUS_1             4              46
  CLUS_2             1              67
  CLUS_3             2              51
D154V9, multiclass
        clus
vv       TAAR5 MUTATED TAAR5 WILD-TYPE
  CLUS_1             1              58
  CLUS_2             3              77
  CLUS_3             2              27
D154V10, multiclass
        clus
vv       TAAR5 MUTATED TAAR5 WILD-TYPE
  CLUS_1             2              18
  CLUS_2             3              88
  CLUS_3             1              56
D154V11, multiclass
        clus
vv       TAAR5 MUTATED TAAR5 WILD-TYPE
  CLUS_1             0              46
  CLUS_2             1              34
  CLUS_3             2              22
D154V12, multiclass
        clus
vv       TAAR5 MUTATED TAAR5 WILD-TYPE
  CLUS_1             2               9
  CLUS_2             1              45
  CLUS_3             0              48

Clustering(155) Variable = C2ORF39 MUTATION ANALYSIS
D155V1, multiclass
        clus
vv       C2ORF39 MUTATED C2ORF39 WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               1                 8
  CLUS_3               1                11
  CLUS_4               2                 4
D155V2, multiclass
        clus
vv       C2ORF39 MUTATED C2ORF39 WILD-TYPE
  CLUS_1               2                 5
  CLUS_2               1                12
  CLUS_3               1                11
D155V3, multiclass
        clus
vv       C2ORF39 MUTATED C2ORF39 WILD-TYPE
  CLUS_1               2                68
  CLUS_2               3                65
  CLUS_3               3                31
D155V4, multiclass
        clus
vv       C2ORF39 MUTATED C2ORF39 WILD-TYPE
  CLUS_1               0                34
  CLUS_2               2                31
  CLUS_3               1                42
D155V5, multiclass
        clus
vv       C2ORF39 MUTATED C2ORF39 WILD-TYPE
  CLUS_1               2                71
  CLUS_2               0                23
  CLUS_3               2                37
D155V6, multiclass
        clus
vv       C2ORF39 MUTATED C2ORF39 WILD-TYPE
  CLUS_1               2                75
  CLUS_2               0                26
  CLUS_3               2                30
D155V7, multiclass
        clus
vv       C2ORF39 MUTATED C2ORF39 WILD-TYPE
  CLUS_1               2                47
  CLUS_2               3                66
  CLUS_3               3                50
D155V8, multiclass
        clus
vv       C2ORF39 MUTATED C2ORF39 WILD-TYPE
  CLUS_1               1                49
  CLUS_2               2                66
  CLUS_3               5                48
D155V9, multiclass
        clus
vv       C2ORF39 MUTATED C2ORF39 WILD-TYPE
  CLUS_1               2                57
  CLUS_2               6                74
  CLUS_3               0                29
D155V10, multiclass
        clus
vv       C2ORF39 MUTATED C2ORF39 WILD-TYPE
  CLUS_1               1                19
  CLUS_2               6                85
  CLUS_3               1                56
D155V11, multiclass
[1] "Remove cluster labels:" "C2ORF39 MUTATED"       
clus
  C2ORF39 MUTATED C2ORF39 WILD-TYPE 
                2               103 
       TCGA-05-4384        TCGA-05-4390        TCGA-05-4396        TCGA-05-4405 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-05-4410        TCGA-05-4415        TCGA-05-4417        TCGA-05-4424 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-05-4425        TCGA-05-4427        TCGA-05-4433        TCGA-05-5420 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-05-5423        TCGA-05-5425        TCGA-05-5428        TCGA-05-5429 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-05-5715        TCGA-35-5375        TCGA-38-4631        TCGA-38-4632 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-38-6178        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4487        TCGA-49-4488 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-49-6767 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-50-5044        TCGA-50-5045        TCGA-50-5049        TCGA-50-5051 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-50-5055        TCGA-50-5066        TCGA-50-5068        TCGA-50-5072 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-50-5930        TCGA-50-5931        TCGA-50-5932        TCGA-50-5933 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-50-5935        TCGA-50-5936        TCGA-50-5939        TCGA-50-5941 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-50-5942        TCGA-50-5944        TCGA-50-5946        TCGA-50-6590 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-50-6591        TCGA-50-6592        TCGA-50-6593        TCGA-50-6594 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-50-6595        TCGA-50-6597        TCGA-55-5899        TCGA-55-6543 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-64-5774        TCGA-64-5775 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-67-4679        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4676        TCGA-75-5122 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-75-5125        TCGA-75-5146        TCGA-75-5147        TCGA-75-6203 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-75-6205        TCGA-75-6206        TCGA-75-6207        TCGA-75-6212 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-80-5611        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
D155V12, multiclass
[1] "Remove cluster labels:" "C2ORF39 MUTATED"       
clus
  C2ORF39 MUTATED C2ORF39 WILD-TYPE 
                2               103 
       TCGA-05-4384        TCGA-05-4390        TCGA-05-4396        TCGA-05-4405 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-05-4410        TCGA-05-4415        TCGA-05-4417        TCGA-05-4424 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-05-4425        TCGA-05-4427        TCGA-05-4433        TCGA-05-5420 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-05-5423        TCGA-05-5425        TCGA-05-5428        TCGA-05-5429 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-05-5715        TCGA-35-5375        TCGA-38-4631        TCGA-38-4632 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-38-6178        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4487        TCGA-49-4488 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4512        TCGA-49-4514        TCGA-49-6742 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-49-6743        TCGA-49-6744        TCGA-49-6745        TCGA-49-6767 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-50-5044        TCGA-50-5045        TCGA-50-5049        TCGA-50-5051 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-50-5055        TCGA-50-5066        TCGA-50-5068        TCGA-50-5072 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-50-5930        TCGA-50-5931        TCGA-50-5932        TCGA-50-5933 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-50-5935        TCGA-50-5936        TCGA-50-5939        TCGA-50-5941 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-50-5942        TCGA-50-5944        TCGA-50-5946        TCGA-50-6590 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-50-6591        TCGA-50-6592        TCGA-50-6593        TCGA-50-6594 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-50-6595        TCGA-50-6597        TCGA-55-5899        TCGA-55-6543 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-64-5774        TCGA-64-5775 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-64-5778        TCGA-64-5779        TCGA-64-5781        TCGA-64-5815 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-67-4679        TCGA-67-6215        TCGA-67-6216        TCGA-67-6217 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-71-6725        TCGA-73-4658        TCGA-73-4676        TCGA-75-5122 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-75-5125        TCGA-75-5146        TCGA-75-5147        TCGA-75-6203 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-75-6205        TCGA-75-6206        TCGA-75-6207        TCGA-75-6212 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-80-5611        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" "C2ORF39 WILD-TYPE" 

Clustering(156) Variable = OR13G1 MUTATION ANALYSIS
D156V1, multiclass
[1] "Remove cluster labels:" "OR13G1 MUTATED"        
clus
  OR13G1 MUTATED OR13G1 WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-3918       TCGA-44-3919       TCGA-44-4112       TCGA-55-1592 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-55-1594       TCGA-55-1595       TCGA-55-1596       TCGA-64-1676 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-64-1677       TCGA-64-1678       TCGA-64-1680       TCGA-67-3770 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
D156V2, multiclass
[1] "Remove cluster labels:" "OR13G1 MUTATED"        
clus
  OR13G1 MUTATED OR13G1 WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-44-3918       TCGA-44-3919       TCGA-44-4112       TCGA-55-1592 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-55-1594       TCGA-55-1595       TCGA-55-1596       TCGA-64-1676 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-64-1677       TCGA-64-1678       TCGA-64-1680       TCGA-67-3770 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" "OR13G1 WILD-TYPE" 
D156V3, multiclass
        clus
vv       OR13G1 MUTATED OR13G1 WILD-TYPE
  CLUS_1              3               67
  CLUS_2              4               64
  CLUS_3              2               32
D156V4, multiclass
        clus
vv       OR13G1 MUTATED OR13G1 WILD-TYPE
  CLUS_1              2               32
  CLUS_2              1               32
  CLUS_3              2               41
D156V5, multiclass
        clus
vv       OR13G1 MUTATED OR13G1 WILD-TYPE
  CLUS_1              3               70
  CLUS_2              0               23
  CLUS_3              4               35
D156V6, multiclass
        clus
vv       OR13G1 MUTATED OR13G1 WILD-TYPE
  CLUS_1              5               72
  CLUS_2              0               26
  CLUS_3              2               30
D156V7, multiclass
        clus
vv       OR13G1 MUTATED OR13G1 WILD-TYPE
  CLUS_1              1               48
  CLUS_2              6               63
  CLUS_3              2               51
D156V8, multiclass
        clus
vv       OR13G1 MUTATED OR13G1 WILD-TYPE
  CLUS_1              2               48
  CLUS_2              2               66
  CLUS_3              5               48
D156V9, multiclass
        clus
vv       OR13G1 MUTATED OR13G1 WILD-TYPE
  CLUS_1              1               58
  CLUS_2              5               75
  CLUS_3              2               27
D156V10, multiclass
        clus
vv       OR13G1 MUTATED OR13G1 WILD-TYPE
  CLUS_1              0               20
  CLUS_2              7               84
  CLUS_3              1               56
D156V11, multiclass
        clus
vv       OR13G1 MUTATED OR13G1 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              2               33
  CLUS_3              1               23
D156V12, multiclass
        clus
vv       OR13G1 MUTATED OR13G1 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              4               42
  CLUS_3              1               47

Clustering(157) Variable = OR2G2 MUTATION ANALYSIS
D157V1, multiclass
        clus
vv       OR2G2 MUTATED OR2G2 WILD-TYPE
  CLUS_1             0               5
  CLUS_2             2               7
  CLUS_3             1              11
  CLUS_4             1               5
D157V2, multiclass
        clus
vv       OR2G2 MUTATED OR2G2 WILD-TYPE
  CLUS_1             1               6
  CLUS_2             2              11
  CLUS_3             1              11
D157V3, multiclass
        clus
vv       OR2G2 MUTATED OR2G2 WILD-TYPE
  CLUS_1             4              66
  CLUS_2             4              64
  CLUS_3             4              30
D157V4, multiclass
        clus
vv       OR2G2 MUTATED OR2G2 WILD-TYPE
  CLUS_1             2              32
  CLUS_2             3              30
  CLUS_3             2              41
D157V5, multiclass
        clus
vv       OR2G2 MUTATED OR2G2 WILD-TYPE
  CLUS_1             7              66
  CLUS_2             2              21
  CLUS_3             0              39
D157V6, multiclass
        clus
vv       OR2G2 MUTATED OR2G2 WILD-TYPE
  CLUS_1             6              71
  CLUS_2             3              23
  CLUS_3             0              32
D157V7, multiclass
        clus
vv       OR2G2 MUTATED OR2G2 WILD-TYPE
  CLUS_1             1              48
  CLUS_2             7              62
  CLUS_3             4              49
D157V8, multiclass
        clus
vv       OR2G2 MUTATED OR2G2 WILD-TYPE
  CLUS_1             3              47
  CLUS_2             3              65
  CLUS_3             6              47
D157V9, multiclass
        clus
vv       OR2G2 MUTATED OR2G2 WILD-TYPE
  CLUS_1             3              56
  CLUS_2             6              74
  CLUS_3             2              27
D157V10, multiclass
        clus
vv       OR2G2 MUTATED OR2G2 WILD-TYPE
  CLUS_1             1              19
  CLUS_2             9              82
  CLUS_3             1              56
D157V11, multiclass
        clus
vv       OR2G2 MUTATED OR2G2 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             1              34
  CLUS_3             2              22
D157V12, multiclass
        clus
vv       OR2G2 MUTATED OR2G2 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             2              44
  CLUS_3             3              45

Clustering(158) Variable = ADAMTS2 MUTATION ANALYSIS
D158V1, multiclass
[1] "Remove cluster labels:" "ADAMTS2 MUTATED"       
clus
  ADAMTS2 MUTATED ADAMTS2 WILD-TYPE 
                2                30 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2656 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3398 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-55-1592        TCGA-55-1594 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-64-1677        TCGA-64-1678 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-64-1680        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
D158V2, multiclass
[1] "Remove cluster labels:" "ADAMTS2 MUTATED"       
clus
  ADAMTS2 MUTATED ADAMTS2 WILD-TYPE 
                2                30 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2656 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3398 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-55-1592        TCGA-55-1594 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-64-1677        TCGA-64-1678 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-64-1680        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774 
"ADAMTS2 WILD-TYPE" "ADAMTS2 WILD-TYPE" 
D158V3, multiclass
        clus
vv       ADAMTS2 MUTATED ADAMTS2 WILD-TYPE
  CLUS_1               6                64
  CLUS_2               5                63
  CLUS_3               3                31
D158V4, multiclass
        clus
vv       ADAMTS2 MUTATED ADAMTS2 WILD-TYPE
  CLUS_1               3                31
  CLUS_2               3                30
  CLUS_3               2                41
D158V5, multiclass
        clus
vv       ADAMTS2 MUTATED ADAMTS2 WILD-TYPE
  CLUS_1               4                69
  CLUS_2               2                21
  CLUS_3               3                36
D158V6, multiclass
        clus
vv       ADAMTS2 MUTATED ADAMTS2 WILD-TYPE
  CLUS_1               6                71
  CLUS_2               1                25
  CLUS_3               2                30
D158V7, multiclass
        clus
vv       ADAMTS2 MUTATED ADAMTS2 WILD-TYPE
  CLUS_1               2                47
  CLUS_2               7                62
  CLUS_3               5                48
D158V8, multiclass
        clus
vv       ADAMTS2 MUTATED ADAMTS2 WILD-TYPE
  CLUS_1               5                45
  CLUS_2               2                66
  CLUS_3               7                46
D158V9, multiclass
        clus
vv       ADAMTS2 MUTATED ADAMTS2 WILD-TYPE
  CLUS_1               3                56
  CLUS_2               8                72
  CLUS_3               3                26
D158V10, multiclass
        clus
vv       ADAMTS2 MUTATED ADAMTS2 WILD-TYPE
  CLUS_1               0                20
  CLUS_2              10                81
  CLUS_3               4                53
D158V11, multiclass
        clus
vv       ADAMTS2 MUTATED ADAMTS2 WILD-TYPE
  CLUS_1               4                42
  CLUS_2               2                33
  CLUS_3               1                23
D158V12, multiclass
        clus
vv       ADAMTS2 MUTATED ADAMTS2 WILD-TYPE
  CLUS_1               1                10
  CLUS_2               3                43
  CLUS_3               3                45

Clustering(159) Variable = FBN2 MUTATION ANALYSIS
D159V1, multiclass
        clus
vv       FBN2 MUTATED FBN2 WILD-TYPE
  CLUS_1            0              5
  CLUS_2            6              3
  CLUS_3            2             10
  CLUS_4            3              3
D159V2, multiclass
        clus
vv       FBN2 MUTATED FBN2 WILD-TYPE
  CLUS_1            3              4
  CLUS_2            3             10
  CLUS_3            5              7
D159V3, multiclass
        clus
vv       FBN2 MUTATED FBN2 WILD-TYPE
  CLUS_1           12             58
  CLUS_2            7             61
  CLUS_3           10             24
D159V4, multiclass
        clus
vv       FBN2 MUTATED FBN2 WILD-TYPE
  CLUS_1            5             29
  CLUS_2            7             26
  CLUS_3            7             36
D159V5, multiclass
        clus
vv       FBN2 MUTATED FBN2 WILD-TYPE
  CLUS_1           15             58
  CLUS_2            1             22
  CLUS_3            7             32
D159V6, multiclass
        clus
vv       FBN2 MUTATED FBN2 WILD-TYPE
  CLUS_1           15             62
  CLUS_2            1             25
  CLUS_3            7             25
D159V7, multiclass
        clus
vv       FBN2 MUTATED FBN2 WILD-TYPE
  CLUS_1            5             44
  CLUS_2           13             56
  CLUS_3           11             42
D159V8, multiclass
        clus
vv       FBN2 MUTATED FBN2 WILD-TYPE
  CLUS_1            9             41
  CLUS_2            9             59
  CLUS_3           11             42
D159V9, multiclass
        clus
vv       FBN2 MUTATED FBN2 WILD-TYPE
  CLUS_1            8             51
  CLUS_2           15             65
  CLUS_3            5             24
D159V10, multiclass
        clus
vv       FBN2 MUTATED FBN2 WILD-TYPE
  CLUS_1            2             18
  CLUS_2           18             73
  CLUS_3            8             49
D159V11, multiclass
        clus
vv       FBN2 MUTATED FBN2 WILD-TYPE
  CLUS_1            8             38
  CLUS_2            4             31
  CLUS_3            3             21
D159V12, multiclass
        clus
vv       FBN2 MUTATED FBN2 WILD-TYPE
  CLUS_1            1             10
  CLUS_2            8             38
  CLUS_3            6             42

Clustering(160) Variable = BTK MUTATION ANALYSIS
D160V1, multiclass
[1] "Remove cluster labels:" "BTK MUTATED"           
clus
  BTK MUTATED BTK WILD-TYPE 
            2            30 
   TCGA-05-4244    TCGA-05-4249    TCGA-05-4250    TCGA-35-3615    TCGA-35-4122 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-35-4123    TCGA-44-2655    TCGA-44-2656    TCGA-44-2657    TCGA-44-2659 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-44-2661    TCGA-44-2662    TCGA-44-2665    TCGA-44-2666    TCGA-44-2668 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-55-1592    TCGA-55-1594 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-64-1680    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773    TCGA-67-3774 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
D160V2, multiclass
[1] "Remove cluster labels:" "BTK MUTATED"           
clus
  BTK MUTATED BTK WILD-TYPE 
            2            30 
   TCGA-05-4244    TCGA-05-4249    TCGA-05-4250    TCGA-35-3615    TCGA-35-4122 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-35-4123    TCGA-44-2655    TCGA-44-2656    TCGA-44-2657    TCGA-44-2659 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-44-2661    TCGA-44-2662    TCGA-44-2665    TCGA-44-2666    TCGA-44-2668 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-44-3918    TCGA-44-3919    TCGA-44-4112    TCGA-55-1592    TCGA-55-1594 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-55-1595    TCGA-55-1596    TCGA-64-1676    TCGA-64-1677    TCGA-64-1678 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-64-1680    TCGA-67-3771    TCGA-67-3772    TCGA-67-3773    TCGA-67-3774 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
D160V3, multiclass
        clus
vv       BTK MUTATED BTK WILD-TYPE
  CLUS_1           3            67
  CLUS_2           2            66
  CLUS_3           2            32
D160V4, multiclass
[1] "Remove cluster labels:" "BTK MUTATED"           
clus
  BTK MUTATED BTK WILD-TYPE 
            2           108 
   TCGA-05-4384    TCGA-05-4396    TCGA-05-4405    TCGA-05-4410    TCGA-05-4415 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-05-4417    TCGA-05-4424    TCGA-05-4425    TCGA-05-4427    TCGA-05-4433 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428    TCGA-05-5429 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-05-5715    TCGA-35-5375    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-44-2656    TCGA-44-2665    TCGA-44-2666    TCGA-44-2668    TCGA-44-3918 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-44-4112    TCGA-44-5643    TCGA-44-5645    TCGA-44-6144    TCGA-44-6145 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-44-6146    TCGA-44-6147    TCGA-44-6148    TCGA-44-6774    TCGA-44-6775 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-44-6776    TCGA-44-6777    TCGA-44-6778    TCGA-44-6779    TCGA-49-4487 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-49-4488    TCGA-49-4490    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-49-6743    TCGA-49-6744    TCGA-49-6745    TCGA-49-6767    TCGA-50-5044 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-50-5045    TCGA-50-5049    TCGA-50-5051    TCGA-50-5055    TCGA-50-5066 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-50-5068    TCGA-50-5072    TCGA-50-5930    TCGA-50-5931    TCGA-50-5932 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-50-5933    TCGA-50-5935    TCGA-50-5936    TCGA-50-5939    TCGA-50-5941 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-50-5942    TCGA-50-5944    TCGA-50-5946    TCGA-50-6590    TCGA-50-6591 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-50-6592    TCGA-50-6593    TCGA-50-6594    TCGA-50-6595    TCGA-50-6597 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-55-5899    TCGA-55-6543    TCGA-55-6642    TCGA-55-6712    TCGA-64-5774 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-64-5775    TCGA-64-5778    TCGA-64-5779    TCGA-64-5781    TCGA-64-5815 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-67-4679    TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-73-4658    TCGA-73-4676    TCGA-75-5122    TCGA-75-5125    TCGA-75-5126 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-75-5146    TCGA-75-5147    TCGA-75-6203    TCGA-75-6205    TCGA-75-6207 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-75-6212    TCGA-80-5611    TCGA-86-6562    TCGA-91-6828    TCGA-91-6829 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
D160V5, multiclass
[1] "Remove cluster labels:" "BTK MUTATED"           
clus
  BTK MUTATED BTK WILD-TYPE 
            2           133 
   TCGA-05-4244    TCGA-05-4249    TCGA-05-4250    TCGA-05-4384    TCGA-05-4396 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405    TCGA-05-4410 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4422    TCGA-05-4426 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4434    TCGA-05-5420    TCGA-05-5423 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-05-5425    TCGA-05-5429    TCGA-05-5715    TCGA-35-3615    TCGA-35-4122 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-35-4123    TCGA-35-5375    TCGA-38-4625    TCGA-38-4626    TCGA-38-4627 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-38-4629    TCGA-38-6178    TCGA-44-2656    TCGA-44-2657    TCGA-44-2661 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2668    TCGA-44-3396    TCGA-44-3918    TCGA-44-3919 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-44-4112    TCGA-44-5643    TCGA-44-5645    TCGA-44-6144    TCGA-44-6145 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-44-6146    TCGA-44-6147    TCGA-44-6148    TCGA-44-6774    TCGA-44-6775 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-44-6776    TCGA-44-6777    TCGA-44-6778    TCGA-44-6779    TCGA-49-4486 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-49-4487    TCGA-49-4488    TCGA-49-4494    TCGA-49-4501    TCGA-49-4505 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-49-4506    TCGA-49-4507    TCGA-49-4510    TCGA-49-4512    TCGA-49-4514 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-49-6742    TCGA-49-6743    TCGA-49-6744    TCGA-49-6745    TCGA-49-6767 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-50-5044    TCGA-50-5045    TCGA-50-5049    TCGA-50-5051    TCGA-50-5066 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-50-5068    TCGA-50-5072    TCGA-50-5930    TCGA-50-5931    TCGA-50-5932 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-50-5933    TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-50-5944    TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-50-6593    TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-55-1594    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6712 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680    TCGA-64-5774 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-64-5778    TCGA-64-5779    TCGA-64-5781    TCGA-64-5815    TCGA-67-3771 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725    TCGA-73-4658 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-73-4659    TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-75-5122 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-75-5125    TCGA-75-6203    TCGA-75-6205    TCGA-75-6206    TCGA-75-6207 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-75-6212    TCGA-80-5611    TCGA-86-6562    TCGA-91-6828    TCGA-91-6829 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
D160V6, multiclass
[1] "Remove cluster labels:" "BTK MUTATED"           
clus
  BTK MUTATED BTK WILD-TYPE 
            2           133 
   TCGA-05-4244    TCGA-05-4249    TCGA-05-4250    TCGA-05-4384    TCGA-05-4396 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-05-4397    TCGA-05-4398    TCGA-05-4402    TCGA-05-4405    TCGA-05-4410 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-05-4417    TCGA-05-4418    TCGA-05-4420    TCGA-05-4422    TCGA-05-4426 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-05-4427    TCGA-05-4430    TCGA-05-4434    TCGA-05-5420    TCGA-05-5423 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-05-5425    TCGA-05-5429    TCGA-05-5715    TCGA-35-3615    TCGA-35-4122 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-35-4123    TCGA-35-5375    TCGA-38-4625    TCGA-38-4626    TCGA-38-4627 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-38-4629    TCGA-38-6178    TCGA-44-2656    TCGA-44-2657    TCGA-44-2661 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-44-2665    TCGA-44-2668    TCGA-44-3396    TCGA-44-3918    TCGA-44-3919 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-44-4112    TCGA-44-5643    TCGA-44-5645    TCGA-44-6144    TCGA-44-6145 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-44-6146    TCGA-44-6147    TCGA-44-6148    TCGA-44-6774    TCGA-44-6775 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-44-6776    TCGA-44-6777    TCGA-44-6778    TCGA-44-6779    TCGA-49-4486 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-49-4487    TCGA-49-4488    TCGA-49-4494    TCGA-49-4501    TCGA-49-4505 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-49-4506    TCGA-49-4507    TCGA-49-4510    TCGA-49-4512    TCGA-49-4514 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-49-6742    TCGA-49-6743    TCGA-49-6744    TCGA-49-6745    TCGA-49-6767 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-50-5044    TCGA-50-5045    TCGA-50-5049    TCGA-50-5051    TCGA-50-5066 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-50-5068    TCGA-50-5072    TCGA-50-5930    TCGA-50-5931    TCGA-50-5932 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-50-5933    TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-50-5944    TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-50-6593    TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-1592 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-55-1594    TCGA-55-1596    TCGA-55-5899    TCGA-55-6543    TCGA-55-6712 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-64-1676    TCGA-64-1677    TCGA-64-1678    TCGA-64-1680    TCGA-64-5774 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-64-5778    TCGA-64-5779    TCGA-64-5781    TCGA-64-5815    TCGA-67-3771 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725    TCGA-73-4658 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-73-4659    TCGA-73-4670    TCGA-73-4675    TCGA-73-4676    TCGA-75-5122 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-75-5125    TCGA-75-6203    TCGA-75-6205    TCGA-75-6206    TCGA-75-6207 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-75-6212    TCGA-80-5611    TCGA-86-6562    TCGA-91-6828    TCGA-91-6829 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
D160V7, multiclass
        clus
vv       BTK MUTATED BTK WILD-TYPE
  CLUS_1           2            47
  CLUS_2           2            67
  CLUS_3           3            50
D160V8, multiclass
        clus
vv       BTK MUTATED BTK WILD-TYPE
  CLUS_1           0            50
  CLUS_2           3            65
  CLUS_3           4            49
D160V9, multiclass
        clus
vv       BTK MUTATED BTK WILD-TYPE
  CLUS_1           3            56
  CLUS_2           4            76
  CLUS_3           0            29
D160V10, multiclass
        clus
vv       BTK MUTATED BTK WILD-TYPE
  CLUS_1           0            20
  CLUS_2           5            86
  CLUS_3           2            55
D160V11, multiclass
[1] "Remove cluster labels:" "BTK MUTATED"           
clus
  BTK MUTATED BTK WILD-TYPE 
            2           103 
   TCGA-05-4384    TCGA-05-4396    TCGA-05-4405    TCGA-05-4410    TCGA-05-4415 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-05-4417    TCGA-05-4424    TCGA-05-4425    TCGA-05-4427    TCGA-05-4433 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428    TCGA-05-5429 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-05-5715    TCGA-35-5375    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-44-5643    TCGA-44-5645    TCGA-44-6144    TCGA-44-6145    TCGA-44-6146 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-44-6147    TCGA-44-6148    TCGA-44-6774    TCGA-44-6775    TCGA-44-6776 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-44-6777    TCGA-44-6778    TCGA-44-6779    TCGA-49-4487    TCGA-49-4488 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-49-4490    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-49-6767    TCGA-50-5044    TCGA-50-5045 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-50-5049    TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-50-5072    TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-50-5935    TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-50-5944    TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-50-6593    TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-5899 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-55-6543    TCGA-55-6642    TCGA-55-6712    TCGA-64-5774    TCGA-64-5775 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-64-5778    TCGA-64-5779    TCGA-64-5781    TCGA-64-5815    TCGA-67-4679 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725    TCGA-73-4658 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-73-4676    TCGA-75-5122    TCGA-75-5125    TCGA-75-5126    TCGA-75-5146 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-75-5147    TCGA-75-6203    TCGA-75-6205    TCGA-75-6206    TCGA-75-6207 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-75-6212    TCGA-80-5611    TCGA-86-6562    TCGA-91-6828    TCGA-91-6829 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
D160V12, multiclass
[1] "Remove cluster labels:" "BTK MUTATED"           
clus
  BTK MUTATED BTK WILD-TYPE 
            2           103 
   TCGA-05-4384    TCGA-05-4396    TCGA-05-4405    TCGA-05-4410    TCGA-05-4415 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-05-4417    TCGA-05-4424    TCGA-05-4425    TCGA-05-4427    TCGA-05-4433 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-05-5420    TCGA-05-5423    TCGA-05-5425    TCGA-05-5428    TCGA-05-5429 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-05-5715    TCGA-35-5375    TCGA-38-4631    TCGA-38-4632    TCGA-38-6178 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-44-5643    TCGA-44-5645    TCGA-44-6144    TCGA-44-6145    TCGA-44-6146 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-44-6147    TCGA-44-6148    TCGA-44-6774    TCGA-44-6775    TCGA-44-6776 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-44-6777    TCGA-44-6778    TCGA-44-6779    TCGA-49-4487    TCGA-49-4488 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-49-4490    TCGA-49-4512    TCGA-49-4514    TCGA-49-6742    TCGA-49-6743 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-49-6744    TCGA-49-6745    TCGA-49-6767    TCGA-50-5044    TCGA-50-5045 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-50-5049    TCGA-50-5051    TCGA-50-5055    TCGA-50-5066    TCGA-50-5068 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-50-5072    TCGA-50-5930    TCGA-50-5931    TCGA-50-5932    TCGA-50-5933 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-50-5935    TCGA-50-5936    TCGA-50-5939    TCGA-50-5941    TCGA-50-5942 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-50-5944    TCGA-50-5946    TCGA-50-6590    TCGA-50-6591    TCGA-50-6592 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-50-6593    TCGA-50-6594    TCGA-50-6595    TCGA-50-6597    TCGA-55-5899 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-55-6543    TCGA-55-6642    TCGA-55-6712    TCGA-64-5774    TCGA-64-5775 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-64-5778    TCGA-64-5779    TCGA-64-5781    TCGA-64-5815    TCGA-67-4679 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-67-6215    TCGA-67-6216    TCGA-67-6217    TCGA-71-6725    TCGA-73-4658 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-73-4676    TCGA-75-5122    TCGA-75-5125    TCGA-75-5126    TCGA-75-5146 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-75-5147    TCGA-75-6203    TCGA-75-6205    TCGA-75-6206    TCGA-75-6207 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-75-6212    TCGA-80-5611    TCGA-86-6562    TCGA-91-6828    TCGA-91-6829 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 
   TCGA-91-6831    TCGA-91-6835    TCGA-91-6836 
"BTK WILD-TYPE" "BTK WILD-TYPE" "BTK WILD-TYPE" 

Clustering(161) Variable = REG1B MUTATION ANALYSIS
D161V1, multiclass
        clus
vv       REG1B MUTATED REG1B WILD-TYPE
  CLUS_1             0               5
  CLUS_2             2               7
  CLUS_3             2              10
  CLUS_4             1               5
D161V2, multiclass
        clus
vv       REG1B MUTATED REG1B WILD-TYPE
  CLUS_1             1               6
  CLUS_2             2              11
  CLUS_3             2              10
D161V3, multiclass
        clus
vv       REG1B MUTATED REG1B WILD-TYPE
  CLUS_1             4              66
  CLUS_2             4              64
  CLUS_3             5              29
D161V4, multiclass
        clus
vv       REG1B MUTATED REG1B WILD-TYPE
  CLUS_1             1              33
  CLUS_2             4              29
  CLUS_3             2              41
D161V5, multiclass
        clus
vv       REG1B MUTATED REG1B WILD-TYPE
  CLUS_1             5              68
  CLUS_2             4              19
  CLUS_3             3              36
D161V6, multiclass
        clus
vv       REG1B MUTATED REG1B WILD-TYPE
  CLUS_1             6              71
  CLUS_2             4              22
  CLUS_3             2              30
D161V7, multiclass
        clus
vv       REG1B MUTATED REG1B WILD-TYPE
  CLUS_1             3              46
  CLUS_2             7              62
  CLUS_3             3              50
D161V8, multiclass
        clus
vv       REG1B MUTATED REG1B WILD-TYPE
  CLUS_1             5              45
  CLUS_2             5              63
  CLUS_3             3              50
D161V9, multiclass
        clus
vv       REG1B MUTATED REG1B WILD-TYPE
  CLUS_1             6              53
  CLUS_2             6              74
  CLUS_3             0              29
D161V10, multiclass
        clus
vv       REG1B MUTATED REG1B WILD-TYPE
  CLUS_1             1              19
  CLUS_2             6              85
  CLUS_3             5              52
D161V11, multiclass
        clus
vv       REG1B MUTATED REG1B WILD-TYPE
  CLUS_1             2              44
  CLUS_2             2              33
  CLUS_3             2              22
D161V12, multiclass
        clus
vv       REG1B MUTATED REG1B WILD-TYPE
  CLUS_1             1              10
  CLUS_2             3              43
  CLUS_3             2              46

Clustering(162) Variable = COL5A2 MUTATION ANALYSIS
D162V1, multiclass
[1] "Remove cluster labels:" "COL5A2 MUTATED"        
clus
  COL5A2 MUTATED COL5A2 WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2657 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-44-2659       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3398       TCGA-44-3918 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
D162V2, multiclass
[1] "Remove cluster labels:" "COL5A2 MUTATED"        
clus
  COL5A2 MUTATED COL5A2 WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2657 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-44-2659       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3398       TCGA-44-3918 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" "COL5A2 WILD-TYPE" 
D162V3, multiclass
        clus
vv       COL5A2 MUTATED COL5A2 WILD-TYPE
  CLUS_1              9               61
  CLUS_2              6               62
  CLUS_3              3               31
D162V4, multiclass
        clus
vv       COL5A2 MUTATED COL5A2 WILD-TYPE
  CLUS_1              5               29
  CLUS_2              5               28
  CLUS_3              3               40
D162V5, multiclass
        clus
vv       COL5A2 MUTATED COL5A2 WILD-TYPE
  CLUS_1              8               65
  CLUS_2              0               23
  CLUS_3              6               33
D162V6, multiclass
        clus
vv       COL5A2 MUTATED COL5A2 WILD-TYPE
  CLUS_1              8               69
  CLUS_2              1               25
  CLUS_3              5               27
D162V7, multiclass
        clus
vv       COL5A2 MUTATED COL5A2 WILD-TYPE
  CLUS_1              2               47
  CLUS_2              9               60
  CLUS_3              7               46
D162V8, multiclass
        clus
vv       COL5A2 MUTATED COL5A2 WILD-TYPE
  CLUS_1              6               44
  CLUS_2              4               64
  CLUS_3              8               45
D162V9, multiclass
        clus
vv       COL5A2 MUTATED COL5A2 WILD-TYPE
  CLUS_1              1               58
  CLUS_2             12               68
  CLUS_3              4               25
D162V10, multiclass
        clus
vv       COL5A2 MUTATED COL5A2 WILD-TYPE
  CLUS_1              1               19
  CLUS_2             14               77
  CLUS_3              2               55
D162V11, multiclass
        clus
vv       COL5A2 MUTATED COL5A2 WILD-TYPE
  CLUS_1              5               41
  CLUS_2              5               30
  CLUS_3              2               22
D162V12, multiclass
        clus
vv       COL5A2 MUTATED COL5A2 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              6               40
  CLUS_3              6               42

Clustering(163) Variable = NHEDC1 MUTATION ANALYSIS
D163V1, multiclass
[1] "Remove cluster labels:" "NHEDC1 MUTATED"        
clus
  NHEDC1 MUTATED NHEDC1 WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
D163V2, multiclass
[1] "Remove cluster labels:" "NHEDC1 MUTATED"        
clus
  NHEDC1 MUTATED NHEDC1 WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" "NHEDC1 WILD-TYPE" 
D163V3, multiclass
        clus
vv       NHEDC1 MUTATED NHEDC1 WILD-TYPE
  CLUS_1              3               67
  CLUS_2              4               64
  CLUS_3              2               32
D163V4, multiclass
        clus
vv       NHEDC1 MUTATED NHEDC1 WILD-TYPE
  CLUS_1              3               31
  CLUS_2              3               30
  CLUS_3              1               42
D163V5, multiclass
        clus
vv       NHEDC1 MUTATED NHEDC1 WILD-TYPE
  CLUS_1              4               69
  CLUS_2              2               21
  CLUS_3              1               38
D163V6, multiclass
        clus
vv       NHEDC1 MUTATED NHEDC1 WILD-TYPE
  CLUS_1              3               74
  CLUS_2              3               23
  CLUS_3              1               31
D163V7, multiclass
        clus
vv       NHEDC1 MUTATED NHEDC1 WILD-TYPE
  CLUS_1              1               48
  CLUS_2              4               65
  CLUS_3              4               49
D163V8, multiclass
        clus
vv       NHEDC1 MUTATED NHEDC1 WILD-TYPE
  CLUS_1              2               48
  CLUS_2              2               66
  CLUS_3              5               48
D163V9, multiclass
        clus
vv       NHEDC1 MUTATED NHEDC1 WILD-TYPE
  CLUS_1              1               58
  CLUS_2              6               74
  CLUS_3              2               27
D163V10, multiclass
        clus
vv       NHEDC1 MUTATED NHEDC1 WILD-TYPE
  CLUS_1              1               19
  CLUS_2              8               83
  CLUS_3              0               57
D163V11, multiclass
        clus
vv       NHEDC1 MUTATED NHEDC1 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              4               31
  CLUS_3              1               23
D163V12, multiclass
        clus
vv       NHEDC1 MUTATED NHEDC1 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              5               41
  CLUS_3              1               47

Clustering(164) Variable = IL1RAPL1 MUTATION ANALYSIS
D164V1, multiclass
        clus
vv       IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  CLUS_1                1                  4
  CLUS_2                1                  8
  CLUS_3                1                 11
  CLUS_4                1                  5
D164V2, multiclass
        clus
vv       IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  CLUS_1                1                  6
  CLUS_2                1                 12
  CLUS_3                2                 10
D164V3, multiclass
        clus
vv       IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  CLUS_1                5                 65
  CLUS_2                3                 65
  CLUS_3                3                 31
D164V4, multiclass
        clus
vv       IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  CLUS_1                1                 33
  CLUS_2                3                 30
  CLUS_3                2                 41
D164V5, multiclass
        clus
vv       IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  CLUS_1                3                 70
  CLUS_2                1                 22
  CLUS_3                3                 36
D164V6, multiclass
        clus
vv       IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  CLUS_1                4                 73
  CLUS_2                1                 25
  CLUS_3                2                 30
D164V7, multiclass
        clus
vv       IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  CLUS_1                2                 47
  CLUS_2                7                 62
  CLUS_3                2                 51
D164V8, multiclass
        clus
vv       IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  CLUS_1                6                 44
  CLUS_2                2                 66
  CLUS_3                3                 50
D164V9, multiclass
        clus
vv       IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  CLUS_1                3                 56
  CLUS_2                6                 74
  CLUS_3                2                 27
D164V10, multiclass
        clus
vv       IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  CLUS_1                3                 17
  CLUS_2                7                 84
  CLUS_3                1                 56
D164V11, multiclass
        clus
vv       IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  CLUS_1                0                 46
  CLUS_2                4                 31
  CLUS_3                1                 23
D164V12, multiclass
        clus
vv       IL1RAPL1 MUTATED IL1RAPL1 WILD-TYPE
  CLUS_1                1                 10
  CLUS_2                4                 42
  CLUS_3                0                 48

Clustering(165) Variable = DGKB MUTATION ANALYSIS
D165V1, multiclass
[1] "Remove cluster labels:" "DGKB MUTATED"          
clus
  DGKB MUTATED DGKB WILD-TYPE 
             2             30 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2657 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-44-2659     TCGA-44-2661     TCGA-44-2662     TCGA-44-2665 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-44-2666     TCGA-44-2668     TCGA-44-3398     TCGA-44-3918 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-55-1594     TCGA-55-1595 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-55-1596     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-64-1680     TCGA-67-3770     TCGA-67-3771     TCGA-67-3772 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-67-3773     TCGA-67-3774 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" 
D165V2, multiclass
[1] "Remove cluster labels:" "DGKB MUTATED"          
clus
  DGKB MUTATED DGKB WILD-TYPE 
             2             30 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2657 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-44-2659     TCGA-44-2661     TCGA-44-2662     TCGA-44-2665 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-44-2666     TCGA-44-2668     TCGA-44-3398     TCGA-44-3918 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-55-1594     TCGA-55-1595 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-55-1596     TCGA-64-1676     TCGA-64-1677     TCGA-64-1678 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-64-1680     TCGA-67-3770     TCGA-67-3771     TCGA-67-3772 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" "DGKB WILD-TYPE" 
    TCGA-67-3773     TCGA-67-3774 
"DGKB WILD-TYPE" "DGKB WILD-TYPE" 
D165V3, multiclass
        clus
vv       DGKB MUTATED DGKB WILD-TYPE
  CLUS_1            6             64
  CLUS_2            3             65
  CLUS_3            2             32
D165V4, multiclass
        clus
vv       DGKB MUTATED DGKB WILD-TYPE
  CLUS_1            3             31
  CLUS_2            3             30
  CLUS_3            3             40
D165V5, multiclass
        clus
vv       DGKB MUTATED DGKB WILD-TYPE
  CLUS_1           10             63
  CLUS_2            0             23
  CLUS_3            1             38
D165V6, multiclass
        clus
vv       DGKB MUTATED DGKB WILD-TYPE
  CLUS_1           10             67
  CLUS_2            0             26
  CLUS_3            1             31
D165V7, multiclass
        clus
vv       DGKB MUTATED DGKB WILD-TYPE
  CLUS_1            0             49
  CLUS_2            7             62
  CLUS_3            3             50
D165V8, multiclass
        clus
vv       DGKB MUTATED DGKB WILD-TYPE
  CLUS_1            5             45
  CLUS_2            1             67
  CLUS_3            4             49
D165V9, multiclass
        clus
vv       DGKB MUTATED DGKB WILD-TYPE
  CLUS_1            2             57
  CLUS_2            6             74
  CLUS_3            3             26
D165V10, multiclass
        clus
vv       DGKB MUTATED DGKB WILD-TYPE
  CLUS_1            1             19
  CLUS_2            8             83
  CLUS_3            2             55
D165V11, multiclass
        clus
vv       DGKB MUTATED DGKB WILD-TYPE
  CLUS_1            3             43
  CLUS_2            3             32
  CLUS_3            2             22
D165V12, multiclass
        clus
vv       DGKB MUTATED DGKB WILD-TYPE
  CLUS_1            0             11
  CLUS_2            5             41
  CLUS_3            3             45

Clustering(166) Variable = COL25A1 MUTATION ANALYSIS
D166V1, multiclass
        clus
vv       COL25A1 MUTATED COL25A1 WILD-TYPE
  CLUS_1               1                 4
  CLUS_2               2                 7
  CLUS_3               0                12
  CLUS_4               0                 6
D166V2, multiclass
        clus
vv       COL25A1 MUTATED COL25A1 WILD-TYPE
  CLUS_1               0                 7
  CLUS_2               1                12
  CLUS_3               2                10
D166V3, multiclass
        clus
vv       COL25A1 MUTATED COL25A1 WILD-TYPE
  CLUS_1               5                65
  CLUS_2               5                63
  CLUS_3               1                33
D166V4, multiclass
        clus
vv       COL25A1 MUTATED COL25A1 WILD-TYPE
  CLUS_1               3                31
  CLUS_2               3                30
  CLUS_3               2                41
D166V5, multiclass
        clus
vv       COL25A1 MUTATED COL25A1 WILD-TYPE
  CLUS_1               5                68
  CLUS_2               2                21
  CLUS_3               1                38
D166V6, multiclass
        clus
vv       COL25A1 MUTATED COL25A1 WILD-TYPE
  CLUS_1               5                72
  CLUS_2               2                24
  CLUS_3               1                31
D166V7, multiclass
        clus
vv       COL25A1 MUTATED COL25A1 WILD-TYPE
  CLUS_1               3                46
  CLUS_2               5                64
  CLUS_3               3                50
D166V8, multiclass
        clus
vv       COL25A1 MUTATED COL25A1 WILD-TYPE
  CLUS_1               2                48
  CLUS_2               6                62
  CLUS_3               3                50
D166V9, multiclass
        clus
vv       COL25A1 MUTATED COL25A1 WILD-TYPE
  CLUS_1               4                55
  CLUS_2               6                74
  CLUS_3               1                28
D166V10, multiclass
        clus
vv       COL25A1 MUTATED COL25A1 WILD-TYPE
  CLUS_1               1                19
  CLUS_2               6                85
  CLUS_3               4                53
D166V11, multiclass
        clus
vv       COL25A1 MUTATED COL25A1 WILD-TYPE
  CLUS_1               3                43
  CLUS_2               2                33
  CLUS_3               1                23
D166V12, multiclass
        clus
vv       COL25A1 MUTATED COL25A1 WILD-TYPE
  CLUS_1               0                11
  CLUS_2               3                43
  CLUS_3               3                45

Clustering(167) Variable = SEMA5A MUTATION ANALYSIS
D167V1, multiclass
        clus
vv       SEMA5A MUTATED SEMA5A WILD-TYPE
  CLUS_1              0                5
  CLUS_2              2                7
  CLUS_3              0               12
  CLUS_4              1                5
D167V2, multiclass
        clus
vv       SEMA5A MUTATED SEMA5A WILD-TYPE
  CLUS_1              1                6
  CLUS_2              0               13
  CLUS_3              2               10
D167V3, multiclass
        clus
vv       SEMA5A MUTATED SEMA5A WILD-TYPE
  CLUS_1              5               65
  CLUS_2              7               61
  CLUS_3              3               31
D167V4, multiclass
        clus
vv       SEMA5A MUTATED SEMA5A WILD-TYPE
  CLUS_1              2               32
  CLUS_2              3               30
  CLUS_3              5               38
D167V5, multiclass
        clus
vv       SEMA5A MUTATED SEMA5A WILD-TYPE
  CLUS_1              5               68
  CLUS_2              2               21
  CLUS_3              7               32
D167V6, multiclass
        clus
vv       SEMA5A MUTATED SEMA5A WILD-TYPE
  CLUS_1              6               71
  CLUS_2              2               24
  CLUS_3              6               26
D167V7, multiclass
        clus
vv       SEMA5A MUTATED SEMA5A WILD-TYPE
  CLUS_1              1               48
  CLUS_2              7               62
  CLUS_3              7               46
D167V8, multiclass
        clus
vv       SEMA5A MUTATED SEMA5A WILD-TYPE
  CLUS_1              4               46
  CLUS_2              4               64
  CLUS_3              7               46
D167V9, multiclass
        clus
vv       SEMA5A MUTATED SEMA5A WILD-TYPE
  CLUS_1              4               55
  CLUS_2              9               71
  CLUS_3              2               27
D167V10, multiclass
        clus
vv       SEMA5A MUTATED SEMA5A WILD-TYPE
  CLUS_1              0               20
  CLUS_2             11               80
  CLUS_3              4               53
D167V11, multiclass
        clus
vv       SEMA5A MUTATED SEMA5A WILD-TYPE
  CLUS_1              4               42
  CLUS_2              4               31
  CLUS_3              2               22
D167V12, multiclass
        clus
vv       SEMA5A MUTATED SEMA5A WILD-TYPE
  CLUS_1              0               11
  CLUS_2              6               40
  CLUS_3              4               44

Clustering(168) Variable = BHMT MUTATION ANALYSIS
D168V1, multiclass
        clus
vv       BHMT MUTATED BHMT WILD-TYPE
  CLUS_1            1              4
  CLUS_2            0              9
  CLUS_3            0             12
  CLUS_4            2              4
D168V2, multiclass
        clus
vv       BHMT MUTATED BHMT WILD-TYPE
  CLUS_1            2              5
  CLUS_2            0             13
  CLUS_3            1             11
D168V3, multiclass
        clus
vv       BHMT MUTATED BHMT WILD-TYPE
  CLUS_1            3             67
  CLUS_2            1             67
  CLUS_3            1             33
D168V4, multiclass
[1] "Remove cluster labels:" "BHMT MUTATED"          
clus
  BHMT MUTATED BHMT WILD-TYPE 
             2            108 
    TCGA-05-4384     TCGA-05-4390     TCGA-05-4396     TCGA-05-4405 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-05-4410     TCGA-05-4415     TCGA-05-4417     TCGA-05-4424 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-05-4425     TCGA-05-4427     TCGA-05-4433     TCGA-05-5420 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-05-5423     TCGA-05-5425     TCGA-05-5429     TCGA-05-5715 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-35-5375     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-44-2656     TCGA-44-2665     TCGA-44-2666     TCGA-44-2668 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-44-3918     TCGA-44-4112     TCGA-44-5643     TCGA-44-5645 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-44-6144     TCGA-44-6145     TCGA-44-6146     TCGA-44-6147 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-44-6148     TCGA-44-6774     TCGA-44-6775     TCGA-44-6776 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-44-6777     TCGA-44-6778     TCGA-44-6779     TCGA-49-4487 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4490     TCGA-49-4512     TCGA-49-4514 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-49-6742     TCGA-49-6743     TCGA-49-6744     TCGA-49-6745 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-49-6767     TCGA-50-5045     TCGA-50-5049     TCGA-50-5051 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-50-5055     TCGA-50-5066     TCGA-50-5068     TCGA-50-5072 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-50-5930     TCGA-50-5931     TCGA-50-5932     TCGA-50-5933 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-50-5935     TCGA-50-5936     TCGA-50-5939     TCGA-50-5941 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-50-5942     TCGA-50-5944     TCGA-50-5946     TCGA-50-6590 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-50-6591     TCGA-50-6592     TCGA-50-6593     TCGA-50-6594 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-50-6595     TCGA-50-6597     TCGA-55-5899     TCGA-55-6543 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-55-6642     TCGA-55-6712     TCGA-64-5774     TCGA-64-5775 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-64-5778     TCGA-64-5779     TCGA-64-5781     TCGA-64-5815 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-67-4679     TCGA-67-6215     TCGA-67-6216     TCGA-67-6217 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-71-6725     TCGA-73-4658     TCGA-73-4676     TCGA-75-5122 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-75-5125     TCGA-75-5126     TCGA-75-5146     TCGA-75-5147 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-75-6203     TCGA-75-6205     TCGA-75-6207     TCGA-75-6211 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-75-6212     TCGA-80-5611     TCGA-86-6562     TCGA-91-6828 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-91-6829     TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
D168V5, multiclass
        clus
vv       BHMT MUTATED BHMT WILD-TYPE
  CLUS_1            3             70
  CLUS_2            0             23
  CLUS_3            1             38
D168V6, multiclass
        clus
vv       BHMT MUTATED BHMT WILD-TYPE
  CLUS_1            3             74
  CLUS_2            0             26
  CLUS_3            1             31
D168V7, multiclass
        clus
vv       BHMT MUTATED BHMT WILD-TYPE
  CLUS_1            1             48
  CLUS_2            2             67
  CLUS_3            2             51
D168V8, multiclass
        clus
vv       BHMT MUTATED BHMT WILD-TYPE
  CLUS_1            2             48
  CLUS_2            1             67
  CLUS_3            2             51
D168V9, multiclass
        clus
vv       BHMT MUTATED BHMT WILD-TYPE
  CLUS_1            2             57
  CLUS_2            3             77
  CLUS_3            0             29
D168V10, multiclass
        clus
vv       BHMT MUTATED BHMT WILD-TYPE
  CLUS_1            0             20
  CLUS_2            3             88
  CLUS_3            2             55
D168V11, multiclass
[1] "Remove cluster labels:" "BHMT MUTATED"          
clus
  BHMT MUTATED BHMT WILD-TYPE 
             2            103 
    TCGA-05-4384     TCGA-05-4390     TCGA-05-4396     TCGA-05-4405 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-05-4410     TCGA-05-4415     TCGA-05-4417     TCGA-05-4424 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-05-4425     TCGA-05-4427     TCGA-05-4433     TCGA-05-5420 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-05-5423     TCGA-05-5425     TCGA-05-5429     TCGA-05-5715 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-35-5375     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-44-5643     TCGA-44-5645     TCGA-44-6144     TCGA-44-6145 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-44-6146     TCGA-44-6147     TCGA-44-6148     TCGA-44-6774 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-44-6775     TCGA-44-6776     TCGA-44-6777     TCGA-44-6778 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-44-6779     TCGA-49-4487     TCGA-49-4488     TCGA-49-4490 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-49-6767     TCGA-50-5045 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-4679     TCGA-67-6215 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-73-4676     TCGA-75-5122     TCGA-75-5125     TCGA-75-5126 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-75-5146     TCGA-75-5147     TCGA-75-6203     TCGA-75-6205 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-75-6206     TCGA-75-6207     TCGA-75-6211     TCGA-75-6212 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-80-5611     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
D168V12, multiclass
[1] "Remove cluster labels:" "BHMT MUTATED"          
clus
  BHMT MUTATED BHMT WILD-TYPE 
             2            103 
    TCGA-05-4384     TCGA-05-4390     TCGA-05-4396     TCGA-05-4405 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-05-4410     TCGA-05-4415     TCGA-05-4417     TCGA-05-4424 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-05-4425     TCGA-05-4427     TCGA-05-4433     TCGA-05-5420 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-05-5423     TCGA-05-5425     TCGA-05-5429     TCGA-05-5715 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-35-5375     TCGA-38-4631     TCGA-38-4632     TCGA-38-6178 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-44-5643     TCGA-44-5645     TCGA-44-6144     TCGA-44-6145 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-44-6146     TCGA-44-6147     TCGA-44-6148     TCGA-44-6774 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-44-6775     TCGA-44-6776     TCGA-44-6777     TCGA-44-6778 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-44-6779     TCGA-49-4487     TCGA-49-4488     TCGA-49-4490 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-49-4512     TCGA-49-4514     TCGA-49-6742     TCGA-49-6743 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-49-6744     TCGA-49-6745     TCGA-49-6767     TCGA-50-5045 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5055     TCGA-50-5066 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-50-5068     TCGA-50-5072     TCGA-50-5930     TCGA-50-5931 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-50-5932     TCGA-50-5933     TCGA-50-5935     TCGA-50-5936 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-50-5939     TCGA-50-5941     TCGA-50-5942     TCGA-50-5944 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-50-5946     TCGA-50-6590     TCGA-50-6591     TCGA-50-6592 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-50-6593     TCGA-50-6594     TCGA-50-6595     TCGA-50-6597 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-55-5899     TCGA-55-6543     TCGA-55-6642     TCGA-55-6712 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-64-5774     TCGA-64-5775     TCGA-64-5778     TCGA-64-5779 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-64-5781     TCGA-64-5815     TCGA-67-4679     TCGA-67-6215 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-67-6216     TCGA-67-6217     TCGA-71-6725     TCGA-73-4658 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-73-4676     TCGA-75-5122     TCGA-75-5125     TCGA-75-5126 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-75-5146     TCGA-75-5147     TCGA-75-6203     TCGA-75-6205 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-75-6206     TCGA-75-6207     TCGA-75-6211     TCGA-75-6212 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-80-5611     TCGA-86-6562     TCGA-91-6828     TCGA-91-6829 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 
    TCGA-91-6831     TCGA-91-6835     TCGA-91-6836 
"BHMT WILD-TYPE" "BHMT WILD-TYPE" "BHMT WILD-TYPE" 

Clustering(169) Variable = CXCL6 MUTATION ANALYSIS
D169V1, multiclass
[1] "Remove cluster labels:" "CXCL6 MUTATED"         
clus
  CXCL6 MUTATED CXCL6 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2666      TCGA-44-2668      TCGA-44-3398 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-3918      TCGA-44-3919      TCGA-44-4112      TCGA-55-1592 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1595      TCGA-55-1596      TCGA-64-1677 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
D169V2, multiclass
[1] "Remove cluster labels:" "CXCL6 MUTATED"         
clus
  CXCL6 MUTATED CXCL6 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2666      TCGA-44-2668      TCGA-44-3398 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-44-3918      TCGA-44-3919      TCGA-44-4112      TCGA-55-1592 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1595      TCGA-55-1596      TCGA-64-1677 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3770      TCGA-67-3771 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" "CXCL6 WILD-TYPE" 
D169V3, multiclass
        clus
vv       CXCL6 MUTATED CXCL6 WILD-TYPE
  CLUS_1             2              68
  CLUS_2             1              67
  CLUS_3             1              33
D169V4, multiclass
        clus
vv       CXCL6 MUTATED CXCL6 WILD-TYPE
  CLUS_1             1              33
  CLUS_2             2              31
  CLUS_3             0              43
D169V5, multiclass
        clus
vv       CXCL6 MUTATED CXCL6 WILD-TYPE
  CLUS_1             2              71
  CLUS_2             0              23
  CLUS_3             2              37
D169V6, multiclass
        clus
vv       CXCL6 MUTATED CXCL6 WILD-TYPE
  CLUS_1             2              75
  CLUS_2             1              25
  CLUS_3             1              31
D169V7, multiclass
        clus
vv       CXCL6 MUTATED CXCL6 WILD-TYPE
  CLUS_1             0              49
  CLUS_2             2              67
  CLUS_3             2              51
D169V8, multiclass
        clus
vv       CXCL6 MUTATED CXCL6 WILD-TYPE
  CLUS_1             2              48
  CLUS_2             1              67
  CLUS_3             1              52
D169V9, multiclass
        clus
vv       CXCL6 MUTATED CXCL6 WILD-TYPE
  CLUS_1             0              59
  CLUS_2             3              77
  CLUS_3             1              28
D169V10, multiclass
        clus
vv       CXCL6 MUTATED CXCL6 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             4              87
  CLUS_3             0              57
D169V11, multiclass
        clus
vv       CXCL6 MUTATED CXCL6 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             2              33
  CLUS_3             0              24
D169V12, multiclass
        clus
vv       CXCL6 MUTATED CXCL6 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             2              44
  CLUS_3             1              47

Clustering(170) Variable = CLEC12B MUTATION ANALYSIS
D170V1, multiclass
[1] "Remove cluster labels:" "CLEC12B MUTATED"       
clus
  CLEC12B MUTATED CLEC12B WILD-TYPE 
                1                31 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2656 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3398        TCGA-44-3918 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-55-1592        TCGA-55-1594 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-64-1676        TCGA-64-1677 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1680        TCGA-67-3770        TCGA-67-3771 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
D170V2, multiclass
[1] "Remove cluster labels:" "CLEC12B MUTATED"       
clus
  CLEC12B MUTATED CLEC12B WILD-TYPE 
                1                31 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2656 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3398        TCGA-44-3918 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-55-1592        TCGA-55-1594 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-64-1676        TCGA-64-1677 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1680        TCGA-67-3770        TCGA-67-3771 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
D170V3, multiclass
        clus
vv       CLEC12B MUTATED CLEC12B WILD-TYPE
  CLUS_1               1                69
  CLUS_2               1                67
  CLUS_3               1                33
D170V4, multiclass
[1] "Remove cluster labels:" "CLEC12B MUTATED"       
clus
  CLEC12B MUTATED CLEC12B WILD-TYPE 
                1               109 
       TCGA-05-4384        TCGA-05-4390        TCGA-05-4396        TCGA-05-4405 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4410        TCGA-05-4415        TCGA-05-4417        TCGA-05-4424 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4425        TCGA-05-4427        TCGA-05-4433        TCGA-05-5420 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-5423        TCGA-05-5425        TCGA-05-5428        TCGA-05-5429 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-5715        TCGA-35-5375        TCGA-38-4631        TCGA-38-4632 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-38-6178        TCGA-44-2656        TCGA-44-2665        TCGA-44-2666 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3918        TCGA-44-4112        TCGA-44-5643 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-5645        TCGA-44-6144        TCGA-44-6145        TCGA-44-6146 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4490        TCGA-49-4512        TCGA-49-4514 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-49-6767        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-55-5899 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-55-6543        TCGA-55-6642        TCGA-55-6712        TCGA-64-5774 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-64-5815        TCGA-67-4679        TCGA-67-6215        TCGA-67-6216 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-67-6217        TCGA-71-6725        TCGA-73-4658        TCGA-73-4676 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-75-5122        TCGA-75-5125        TCGA-75-5126        TCGA-75-5146 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-75-5147        TCGA-75-6203        TCGA-75-6205        TCGA-75-6207 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-75-6211        TCGA-75-6212        TCGA-80-5611        TCGA-86-6562 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6831        TCGA-91-6835 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-91-6836 
"CLEC12B WILD-TYPE" 
D170V5, multiclass
        clus
vv       CLEC12B MUTATED CLEC12B WILD-TYPE
  CLUS_1               1                72
  CLUS_2               2                21
  CLUS_3               0                39
D170V6, multiclass
        clus
vv       CLEC12B MUTATED CLEC12B WILD-TYPE
  CLUS_1               1                76
  CLUS_2               2                24
  CLUS_3               0                32
D170V7, multiclass
        clus
vv       CLEC12B MUTATED CLEC12B WILD-TYPE
  CLUS_1               2                47
  CLUS_2               1                68
  CLUS_3               0                53
D170V8, multiclass
        clus
vv       CLEC12B MUTATED CLEC12B WILD-TYPE
  CLUS_1               1                49
  CLUS_2               2                66
  CLUS_3               0                53
D170V9, multiclass
        clus
vv       CLEC12B MUTATED CLEC12B WILD-TYPE
  CLUS_1               2                57
  CLUS_2               1                79
  CLUS_3               0                29
D170V10, multiclass
        clus
vv       CLEC12B MUTATED CLEC12B WILD-TYPE
  CLUS_1               0                20
  CLUS_2               1                90
  CLUS_3               2                55
D170V11, multiclass
[1] "Remove cluster labels:" "CLEC12B MUTATED"       
clus
  CLEC12B MUTATED CLEC12B WILD-TYPE 
                1               104 
       TCGA-05-4384        TCGA-05-4390        TCGA-05-4396        TCGA-05-4405 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4410        TCGA-05-4415        TCGA-05-4417        TCGA-05-4424 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4425        TCGA-05-4427        TCGA-05-4433        TCGA-05-5420 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-5423        TCGA-05-5425        TCGA-05-5428        TCGA-05-5429 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-5715        TCGA-35-5375        TCGA-38-4631        TCGA-38-4632 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-38-6178        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4487        TCGA-49-4490 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6767        TCGA-50-5044 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-6597        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-55-6712        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-4679 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4676        TCGA-75-5122        TCGA-75-5125 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-75-5126        TCGA-75-5146        TCGA-75-5147        TCGA-75-6203 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-75-6205        TCGA-75-6206        TCGA-75-6207        TCGA-75-6211 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-75-6212        TCGA-80-5611        TCGA-86-6562        TCGA-91-6828 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
D170V12, multiclass
[1] "Remove cluster labels:" "CLEC12B MUTATED"       
clus
  CLEC12B MUTATED CLEC12B WILD-TYPE 
                1               104 
       TCGA-05-4384        TCGA-05-4390        TCGA-05-4396        TCGA-05-4405 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4410        TCGA-05-4415        TCGA-05-4417        TCGA-05-4424 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-4425        TCGA-05-4427        TCGA-05-4433        TCGA-05-5420 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-5423        TCGA-05-5425        TCGA-05-5428        TCGA-05-5429 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-05-5715        TCGA-35-5375        TCGA-38-4631        TCGA-38-4632 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-38-6178        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-49-4487        TCGA-49-4490 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6767        TCGA-50-5044 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-50-6597        TCGA-55-5899        TCGA-55-6543        TCGA-55-6642 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-55-6712        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-64-5815        TCGA-67-4679 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-67-6215        TCGA-67-6216        TCGA-67-6217        TCGA-71-6725 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4676        TCGA-75-5122        TCGA-75-5125 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-75-5126        TCGA-75-5146        TCGA-75-5147        TCGA-75-6203 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-75-6205        TCGA-75-6206        TCGA-75-6207        TCGA-75-6211 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-75-6212        TCGA-80-5611        TCGA-86-6562        TCGA-91-6828 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" "CLEC12B WILD-TYPE" 

Clustering(171) Variable = DYDC2 MUTATION ANALYSIS
D171V1, multiclass
[1] "Remove cluster labels:" "DYDC2 MUTATED"         
clus
  DYDC2 MUTATED DYDC2 WILD-TYPE 
              2              30 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-4122 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-35-4123      TCGA-44-2655      TCGA-44-2656      TCGA-44-2657 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-4112      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-55-1596      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-64-1680      TCGA-67-3770      TCGA-67-3771      TCGA-67-3772 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-67-3773      TCGA-67-3774 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
D171V2, multiclass
[1] "Remove cluster labels:" "DYDC2 MUTATED"         
clus
  DYDC2 MUTATED DYDC2 WILD-TYPE 
              2              30 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-4122 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-35-4123      TCGA-44-2655      TCGA-44-2656      TCGA-44-2657 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-4112      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-55-1596      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-64-1680      TCGA-67-3770      TCGA-67-3771      TCGA-67-3772 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-67-3773      TCGA-67-3774 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
D171V3, multiclass
        clus
vv       DYDC2 MUTATED DYDC2 WILD-TYPE
  CLUS_1             0              70
  CLUS_2             2              66
  CLUS_3             1              33
D171V4, multiclass
[1] "Remove cluster labels:" "DYDC2 MUTATED"         
clus
  DYDC2 MUTATED DYDC2 WILD-TYPE 
              1             109 
     TCGA-05-4384      TCGA-05-4390      TCGA-05-4396      TCGA-05-4405 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4410      TCGA-05-4415      TCGA-05-4417      TCGA-05-4424 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4425      TCGA-05-4427      TCGA-05-4433      TCGA-05-5420 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-5423      TCGA-05-5425      TCGA-05-5428      TCGA-05-5429 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-5715      TCGA-35-5375      TCGA-38-4631      TCGA-38-4632 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-38-6178      TCGA-44-2656      TCGA-44-2665      TCGA-44-2666 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-3918      TCGA-44-4112      TCGA-44-5643      TCGA-44-5645 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-6144      TCGA-44-6145      TCGA-44-6146      TCGA-44-6147 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-6148      TCGA-44-6774      TCGA-44-6775      TCGA-44-6776 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-6777      TCGA-44-6778      TCGA-44-6779      TCGA-49-4487 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-49-4488      TCGA-49-4490      TCGA-49-4512      TCGA-49-4514 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-49-6742      TCGA-49-6743      TCGA-49-6744      TCGA-49-6745 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-49-6767      TCGA-50-5044      TCGA-50-5045      TCGA-50-5049 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-5051      TCGA-50-5055      TCGA-50-5066      TCGA-50-5068 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-5072      TCGA-50-5930      TCGA-50-5931      TCGA-50-5932 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-5933      TCGA-50-5935      TCGA-50-5936      TCGA-50-5939 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-5941      TCGA-50-5942      TCGA-50-5944      TCGA-50-5946 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-6590      TCGA-50-6591      TCGA-50-6592      TCGA-50-6593 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-6594      TCGA-50-6595      TCGA-50-6597      TCGA-55-5899 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-55-6543      TCGA-55-6642      TCGA-55-6712      TCGA-64-5774 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-64-5775      TCGA-64-5778      TCGA-64-5779      TCGA-64-5781 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-64-5815      TCGA-67-4679      TCGA-67-6215      TCGA-67-6216 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-67-6217      TCGA-71-6725      TCGA-73-4658      TCGA-73-4676 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-75-5122      TCGA-75-5125      TCGA-75-5126      TCGA-75-5146 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-75-5147      TCGA-75-6203      TCGA-75-6205      TCGA-75-6207 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-75-6211      TCGA-75-6212      TCGA-80-5611      TCGA-86-6562 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-91-6836 
"DYDC2 WILD-TYPE" 
D171V5, multiclass
[1] "Remove cluster labels:" "DYDC2 MUTATED"         
clus
  DYDC2 MUTATED DYDC2 WILD-TYPE 
              2             133 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-05-4384 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4396      TCGA-05-4397      TCGA-05-4398      TCGA-05-4402 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4405      TCGA-05-4410      TCGA-05-4417      TCGA-05-4418 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4420      TCGA-05-4422      TCGA-05-4426      TCGA-05-4427 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4430      TCGA-05-4434      TCGA-05-5420      TCGA-05-5423 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-5425      TCGA-05-5429      TCGA-05-5715      TCGA-35-4122 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4629      TCGA-38-6178      TCGA-44-2656 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2661      TCGA-44-2665      TCGA-44-3396 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-3398      TCGA-44-3918      TCGA-44-3919      TCGA-44-4112 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-5643      TCGA-44-5645      TCGA-44-6144      TCGA-44-6145 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-6146      TCGA-44-6147      TCGA-44-6148      TCGA-44-6774 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-6775      TCGA-44-6776      TCGA-44-6777      TCGA-44-6778 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-6779      TCGA-49-4486      TCGA-49-4487      TCGA-49-4488 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-49-4494      TCGA-49-4501      TCGA-49-4505      TCGA-49-4506 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-49-4507      TCGA-49-4510      TCGA-49-4512      TCGA-49-4514 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-49-6742      TCGA-49-6743      TCGA-49-6744      TCGA-49-6745 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-49-6767      TCGA-50-5044      TCGA-50-5045      TCGA-50-5049 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-5051      TCGA-50-5066      TCGA-50-5068      TCGA-50-5072 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-5930      TCGA-50-5931      TCGA-50-5932      TCGA-50-5933 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1596 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6712      TCGA-64-1676 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-64-1677      TCGA-64-1678      TCGA-64-1680      TCGA-64-5774 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-64-5778      TCGA-64-5779      TCGA-64-5781      TCGA-64-5815 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-6215      TCGA-67-6216      TCGA-67-6217 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4658      TCGA-73-4659      TCGA-73-4670 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-73-4675      TCGA-73-4676      TCGA-75-5122      TCGA-75-5125 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-75-6203      TCGA-75-6205      TCGA-75-6206      TCGA-75-6207 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-75-6211      TCGA-75-6212      TCGA-80-5611      TCGA-86-6562 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-91-6836 
"DYDC2 WILD-TYPE" 
D171V6, multiclass
[1] "Remove cluster labels:" "DYDC2 MUTATED"         
clus
  DYDC2 MUTATED DYDC2 WILD-TYPE 
              2             133 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-05-4384 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4396      TCGA-05-4397      TCGA-05-4398      TCGA-05-4402 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4405      TCGA-05-4410      TCGA-05-4417      TCGA-05-4418 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4420      TCGA-05-4422      TCGA-05-4426      TCGA-05-4427 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-4430      TCGA-05-4434      TCGA-05-5420      TCGA-05-5423 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-05-5425      TCGA-05-5429      TCGA-05-5715      TCGA-35-4122 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-35-4123      TCGA-35-5375      TCGA-38-4625      TCGA-38-4626 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-38-4627      TCGA-38-4629      TCGA-38-6178      TCGA-44-2656 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2661      TCGA-44-2665      TCGA-44-3396 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-3398      TCGA-44-3918      TCGA-44-3919      TCGA-44-4112 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-5643      TCGA-44-5645      TCGA-44-6144      TCGA-44-6145 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-6146      TCGA-44-6147      TCGA-44-6148      TCGA-44-6774 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-6775      TCGA-44-6776      TCGA-44-6777      TCGA-44-6778 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-44-6779      TCGA-49-4486      TCGA-49-4487      TCGA-49-4488 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-49-4494      TCGA-49-4501      TCGA-49-4505      TCGA-49-4506 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-49-4507      TCGA-49-4510      TCGA-49-4512      TCGA-49-4514 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-49-6742      TCGA-49-6743      TCGA-49-6744      TCGA-49-6745 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-49-6767      TCGA-50-5044      TCGA-50-5045      TCGA-50-5049 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-5051      TCGA-50-5066      TCGA-50-5068      TCGA-50-5072 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-5930      TCGA-50-5931      TCGA-50-5932      TCGA-50-5933 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-5936      TCGA-50-5939      TCGA-50-5941      TCGA-50-5942 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-5944      TCGA-50-5946      TCGA-50-6590      TCGA-50-6591 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-6592      TCGA-50-6593      TCGA-50-6594      TCGA-50-6595 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-50-6597      TCGA-55-1592      TCGA-55-1594      TCGA-55-1596 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-55-5899      TCGA-55-6543      TCGA-55-6712      TCGA-64-1676 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-64-1677      TCGA-64-1678      TCGA-64-1680      TCGA-64-5774 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-64-5778      TCGA-64-5779      TCGA-64-5781      TCGA-64-5815 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-67-3771      TCGA-67-6215      TCGA-67-6216      TCGA-67-6217 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-71-6725      TCGA-73-4658      TCGA-73-4659      TCGA-73-4670 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-73-4675      TCGA-73-4676      TCGA-75-5122      TCGA-75-5125 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-75-6203      TCGA-75-6205      TCGA-75-6206      TCGA-75-6207 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-75-6211      TCGA-75-6212      TCGA-80-5611      TCGA-86-6562 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-91-6828      TCGA-91-6829      TCGA-91-6831      TCGA-91-6835 
"DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" "DYDC2 WILD-TYPE" 
     TCGA-91-6836 
"DYDC2 WILD-TYPE" 
D171V7, multiclass
        clus
vv       DYDC2 MUTATED DYDC2 WILD-TYPE
  CLUS_1             1              48
  CLUS_2             1              68
  CLUS_3             1              52
D171V8, multiclass
        clus
vv       DYDC2 MUTATED DYDC2 WILD-TYPE
  CLUS_1             1              49
  CLUS_2             1              67
  CLUS_3             1              52
D171V9, multiclass
        clus
vv       DYDC2 MUTATED DYDC2 WILD-TYPE
  CLUS_1             1              58
  CLUS_2             2              78
  CLUS_3             0              29
D171V10, multiclass
        clus
vv       DYDC2 MUTATED DYDC2 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             2              89
  CLUS_3             1              56
D171V11, multiclass
D171V12, multiclass

Clustering(172) Variable = AKR1B10 MUTATION ANALYSIS
D172V1, multiclass
D172V2, multiclass
D172V3, multiclass
        clus
vv       AKR1B10 MUTATED AKR1B10 WILD-TYPE
  CLUS_1               3                67
  CLUS_2               1                67
  CLUS_3               0                34
D172V4, multiclass
        clus
vv       AKR1B10 MUTATED AKR1B10 WILD-TYPE
  CLUS_1               1                33
  CLUS_2               0                33
  CLUS_3               3                40
D172V5, multiclass
        clus
vv       AKR1B10 MUTATED AKR1B10 WILD-TYPE
  CLUS_1               4                69
  CLUS_2               0                23
  CLUS_3               0                39
D172V6, multiclass
        clus
vv       AKR1B10 MUTATED AKR1B10 WILD-TYPE
  CLUS_1               4                73
  CLUS_2               0                26
  CLUS_3               0                32
D172V7, multiclass
        clus
vv       AKR1B10 MUTATED AKR1B10 WILD-TYPE
  CLUS_1               0                49
  CLUS_2               3                66
  CLUS_3               1                52
D172V8, multiclass
        clus
vv       AKR1B10 MUTATED AKR1B10 WILD-TYPE
  CLUS_1               2                48
  CLUS_2               0                68
  CLUS_3               2                51
D172V9, multiclass
        clus
vv       AKR1B10 MUTATED AKR1B10 WILD-TYPE
  CLUS_1               1                58
  CLUS_2               2                78
  CLUS_3               1                28
D172V10, multiclass
        clus
vv       AKR1B10 MUTATED AKR1B10 WILD-TYPE
  CLUS_1               0                20
  CLUS_2               3                88
  CLUS_3               1                56
D172V11, multiclass
        clus
vv       AKR1B10 MUTATED AKR1B10 WILD-TYPE
  CLUS_1               1                45
  CLUS_2               2                33
  CLUS_3               1                23
D172V12, multiclass
        clus
vv       AKR1B10 MUTATED AKR1B10 WILD-TYPE
  CLUS_1               0                11
  CLUS_2               3                43
  CLUS_3               1                47

Clustering(173) Variable = CMA1 MUTATION ANALYSIS
D173V1, multiclass
[1] "Remove cluster labels:" "CMA1 MUTATED"          
clus
  CMA1 MUTATED CMA1 WILD-TYPE 
             1             31 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2656 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2659     TCGA-44-2661     TCGA-44-2662 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-2665     TCGA-44-2666     TCGA-44-2668     TCGA-44-3398 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-3918     TCGA-44-3919     TCGA-44-4112     TCGA-55-1592 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-55-1594     TCGA-55-1595     TCGA-55-1596     TCGA-64-1676 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-64-1677     TCGA-64-1680     TCGA-67-3770     TCGA-67-3771 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
D173V2, multiclass
[1] "Remove cluster labels:" "CMA1 MUTATED"          
clus
  CMA1 MUTATED CMA1 WILD-TYPE 
             1             31 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-35-4122     TCGA-35-4123     TCGA-44-2655     TCGA-44-2656 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2659     TCGA-44-2661     TCGA-44-2662 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-2665     TCGA-44-2666     TCGA-44-2668     TCGA-44-3398 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-3918     TCGA-44-3919     TCGA-44-4112     TCGA-55-1592 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-55-1594     TCGA-55-1595     TCGA-55-1596     TCGA-64-1676 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-64-1677     TCGA-64-1680     TCGA-67-3770     TCGA-67-3771 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
D173V3, multiclass
        clus
vv       CMA1 MUTATED CMA1 WILD-TYPE
  CLUS_1            1             69
  CLUS_2            3             65
  CLUS_3            0             34
D173V4, multiclass
        clus
vv       CMA1 MUTATED CMA1 WILD-TYPE
  CLUS_1            1             33
  CLUS_2            1             32
  CLUS_3            1             42
D173V5, multiclass
[1] "Remove cluster labels:" "CMA1 MUTATED"          
clus
  CMA1 MUTATED CMA1 WILD-TYPE 
             2            133 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-05-4384 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-4397     TCGA-05-4398     TCGA-05-4402     TCGA-05-4405 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-4410     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4426     TCGA-05-4427     TCGA-05-4430 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4629     TCGA-38-6178     TCGA-44-2656 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2661     TCGA-44-2665     TCGA-44-2668 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4494     TCGA-49-4501     TCGA-49-4505 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-49-4506     TCGA-49-4507     TCGA-49-4510     TCGA-49-4512 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-49-4514     TCGA-49-6742     TCGA-49-6743     TCGA-49-6744 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-49-6745     TCGA-49-6767     TCGA-50-5044     TCGA-50-5045 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5066     TCGA-50-5068 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-5072     TCGA-50-5930     TCGA-50-5931     TCGA-50-5932 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-5933     TCGA-50-5936     TCGA-50-5939     TCGA-50-5941 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-5942     TCGA-50-5944     TCGA-50-5946     TCGA-50-6590 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-6591     TCGA-50-6592     TCGA-50-6593     TCGA-50-6594 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-6595     TCGA-50-6597     TCGA-55-1592     TCGA-55-1594 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6712 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1680     TCGA-64-5774 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-64-5778     TCGA-64-5779     TCGA-64-5781     TCGA-64-5815 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-6215     TCGA-67-6216     TCGA-67-6217 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-71-6725     TCGA-73-4658     TCGA-73-4659     TCGA-73-4670 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-73-4675     TCGA-73-4676     TCGA-75-5122     TCGA-75-5125 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-75-6203     TCGA-75-6205     TCGA-75-6206     TCGA-75-6207 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-75-6211     TCGA-75-6212     TCGA-80-5611     TCGA-86-6562 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-91-6836 
"CMA1 WILD-TYPE" 
D173V6, multiclass
[1] "Remove cluster labels:" "CMA1 MUTATED"          
clus
  CMA1 MUTATED CMA1 WILD-TYPE 
             2            133 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-05-4384 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-4397     TCGA-05-4398     TCGA-05-4402     TCGA-05-4405 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-4410     TCGA-05-4417     TCGA-05-4418     TCGA-05-4420 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-4422     TCGA-05-4426     TCGA-05-4427     TCGA-05-4430 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-4434     TCGA-05-5420     TCGA-05-5423     TCGA-05-5425 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-05-5429     TCGA-05-5715     TCGA-35-3615     TCGA-35-4122 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-35-4123     TCGA-35-5375     TCGA-38-4625     TCGA-38-4626 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-38-4627     TCGA-38-4629     TCGA-38-6178     TCGA-44-2656 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-2657     TCGA-44-2661     TCGA-44-2665     TCGA-44-2668 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-3396     TCGA-44-3398     TCGA-44-3918     TCGA-44-3919 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-4112     TCGA-44-5643     TCGA-44-5645     TCGA-44-6144 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-6145     TCGA-44-6146     TCGA-44-6147     TCGA-44-6148 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-6774     TCGA-44-6775     TCGA-44-6776     TCGA-44-6777 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-44-6778     TCGA-44-6779     TCGA-49-4486     TCGA-49-4487 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-49-4488     TCGA-49-4494     TCGA-49-4501     TCGA-49-4505 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-49-4506     TCGA-49-4507     TCGA-49-4510     TCGA-49-4512 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-49-4514     TCGA-49-6742     TCGA-49-6743     TCGA-49-6744 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-49-6745     TCGA-49-6767     TCGA-50-5044     TCGA-50-5045 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-5049     TCGA-50-5051     TCGA-50-5066     TCGA-50-5068 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-5072     TCGA-50-5930     TCGA-50-5931     TCGA-50-5932 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-5933     TCGA-50-5936     TCGA-50-5939     TCGA-50-5941 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-5942     TCGA-50-5944     TCGA-50-5946     TCGA-50-6590 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-6591     TCGA-50-6592     TCGA-50-6593     TCGA-50-6594 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-50-6595     TCGA-50-6597     TCGA-55-1592     TCGA-55-1594 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-55-1596     TCGA-55-5899     TCGA-55-6543     TCGA-55-6712 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-64-1676     TCGA-64-1677     TCGA-64-1680     TCGA-64-5774 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-64-5778     TCGA-64-5779     TCGA-64-5781     TCGA-64-5815 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-67-3771     TCGA-67-6215     TCGA-67-6216     TCGA-67-6217 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-71-6725     TCGA-73-4658     TCGA-73-4659     TCGA-73-4670 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-73-4675     TCGA-73-4676     TCGA-75-5122     TCGA-75-5125 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-75-6203     TCGA-75-6205     TCGA-75-6206     TCGA-75-6207 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-75-6211     TCGA-75-6212     TCGA-80-5611     TCGA-86-6562 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-91-6828     TCGA-91-6829     TCGA-91-6831     TCGA-91-6835 
"CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" "CMA1 WILD-TYPE" 
    TCGA-91-6836 
"CMA1 WILD-TYPE" 
D173V7, multiclass
        clus
vv       CMA1 MUTATED CMA1 WILD-TYPE
  CLUS_1            2             47
  CLUS_2            0             69
  CLUS_3            2             51
D173V8, multiclass
        clus
vv       CMA1 MUTATED CMA1 WILD-TYPE
  CLUS_1            0             50
  CLUS_2            3             65
  CLUS_3            1             52
D173V9, multiclass
        clus
vv       CMA1 MUTATED CMA1 WILD-TYPE
  CLUS_1            2             57
  CLUS_2            2             78
  CLUS_3            0             29
D173V10, multiclass
        clus
vv       CMA1 MUTATED CMA1 WILD-TYPE
  CLUS_1            0             20
  CLUS_2            2             89
  CLUS_3            2             55
D173V11, multiclass
        clus
vv       CMA1 MUTATED CMA1 WILD-TYPE
  CLUS_1            3             43
  CLUS_2            0             35
  CLUS_3            0             24
D173V12, multiclass
        clus
vv       CMA1 MUTATED CMA1 WILD-TYPE
  CLUS_1            0             11
  CLUS_2            0             46
  CLUS_3            3             45

Clustering(174) Variable = KRTAP1-5 MUTATION ANALYSIS
D174V1, multiclass
D174V2, multiclass
D174V3, multiclass
        clus
vv       KRTAP1-5 MUTATED KRTAP1-5 WILD-TYPE
  CLUS_1                4                 66
  CLUS_2                1                 67
  CLUS_3                2                 32
D174V4, multiclass
        clus
vv       KRTAP1-5 MUTATED KRTAP1-5 WILD-TYPE
  CLUS_1                2                 32
  CLUS_2                3                 30
  CLUS_3                2                 41
D174V5, multiclass
        clus
vv       KRTAP1-5 MUTATED KRTAP1-5 WILD-TYPE
  CLUS_1                2                 71
  CLUS_2                0                 23
  CLUS_3                2                 37
D174V6, multiclass
        clus
vv       KRTAP1-5 MUTATED KRTAP1-5 WILD-TYPE
  CLUS_1                2                 75
  CLUS_2                1                 25
  CLUS_3                1                 31
D174V7, multiclass
        clus
vv       KRTAP1-5 MUTATED KRTAP1-5 WILD-TYPE
  CLUS_1                1                 48
  CLUS_2                4                 65
  CLUS_3                2                 51
D174V8, multiclass
        clus
vv       KRTAP1-5 MUTATED KRTAP1-5 WILD-TYPE
  CLUS_1                4                 46
  CLUS_2                2                 66
  CLUS_3                1                 52
D174V9, multiclass
        clus
vv       KRTAP1-5 MUTATED KRTAP1-5 WILD-TYPE
  CLUS_1                1                 58
  CLUS_2                4                 76
  CLUS_3                2                 27
D174V10, multiclass
        clus
vv       KRTAP1-5 MUTATED KRTAP1-5 WILD-TYPE
  CLUS_1                2                 18
  CLUS_2                4                 87
  CLUS_3                1                 56
D174V11, multiclass
        clus
vv       KRTAP1-5 MUTATED KRTAP1-5 WILD-TYPE
  CLUS_1                3                 43
  CLUS_2                3                 32
  CLUS_3                1                 23
D174V12, multiclass
        clus
vv       KRTAP1-5 MUTATED KRTAP1-5 WILD-TYPE
  CLUS_1                1                 10
  CLUS_2                4                 42
  CLUS_3                2                 46

Clustering(175) Variable = STX2 MUTATION ANALYSIS
D175V1, multiclass
[1] "Remove cluster labels:" "STX2 MUTATED"          
clus
  STX2 MUTATED STX2 WILD-TYPE 
             1             31 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-35-4122     TCGA-44-2655     TCGA-44-2656     TCGA-44-2657 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-44-2659     TCGA-44-2661     TCGA-44-2662     TCGA-44-2665 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-44-2666     TCGA-44-2668     TCGA-44-3398     TCGA-44-3918 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-55-1592     TCGA-55-1594 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-55-1595     TCGA-55-1596     TCGA-64-1676     TCGA-64-1677 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-64-1678     TCGA-64-1680     TCGA-67-3770     TCGA-67-3771 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
D175V2, multiclass
[1] "Remove cluster labels:" "STX2 MUTATED"          
clus
  STX2 MUTATED STX2 WILD-TYPE 
             1             31 
    TCGA-05-4244     TCGA-05-4249     TCGA-05-4250     TCGA-35-3615 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-35-4122     TCGA-44-2655     TCGA-44-2656     TCGA-44-2657 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-44-2659     TCGA-44-2661     TCGA-44-2662     TCGA-44-2665 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-44-2666     TCGA-44-2668     TCGA-44-3398     TCGA-44-3918 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-44-3919     TCGA-44-4112     TCGA-55-1592     TCGA-55-1594 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-55-1595     TCGA-55-1596     TCGA-64-1676     TCGA-64-1677 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-64-1678     TCGA-64-1680     TCGA-67-3770     TCGA-67-3771 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
    TCGA-67-3772     TCGA-67-3773     TCGA-67-3774 
"STX2 WILD-TYPE" "STX2 WILD-TYPE" "STX2 WILD-TYPE" 
D175V3, multiclass
        clus
vv       STX2 MUTATED STX2 WILD-TYPE
  CLUS_1            1             69
  CLUS_2            2             66
  CLUS_3            1             33
D175V4, multiclass
        clus
vv       STX2 MUTATED STX2 WILD-TYPE
  CLUS_1            0             34
  CLUS_2            1             32
  CLUS_3            2             41
D175V5, multiclass
        clus
vv       STX2 MUTATED STX2 WILD-TYPE
  CLUS_1            2             71
  CLUS_2            0             23
  CLUS_3            2             37
D175V6, multiclass
        clus
vv       STX2 MUTATED STX2 WILD-TYPE
  CLUS_1            2             75
  CLUS_2            1             25
  CLUS_3            1             31
D175V7, multiclass
        clus
vv       STX2 MUTATED STX2 WILD-TYPE
  CLUS_1            0             49
  CLUS_2            2             67
  CLUS_3            2             51
D175V8, multiclass
        clus
vv       STX2 MUTATED STX2 WILD-TYPE
  CLUS_1            2             48
  CLUS_2            1             67
  CLUS_3            1             52
D175V9, multiclass
        clus
vv       STX2 MUTATED STX2 WILD-TYPE
  CLUS_1            0             59
  CLUS_2            3             77
  CLUS_3            1             28
D175V10, multiclass
        clus
vv       STX2 MUTATED STX2 WILD-TYPE
  CLUS_1            1             19
  CLUS_2            3             88
  CLUS_3            0             57
D175V11, multiclass
        clus
vv       STX2 MUTATED STX2 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            1             34
  CLUS_3            1             23
D175V12, multiclass
        clus
vv       STX2 MUTATED STX2 WILD-TYPE
  CLUS_1            1             10
  CLUS_2            1             45
  CLUS_3            1             47

Clustering(176) Variable = AQP10 MUTATION ANALYSIS
D176V1, multiclass
[1] "Remove cluster labels:" "AQP10 MUTATED"         
clus
  AQP10 MUTATED AQP10 WILD-TYPE 
              2              30 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-44-4112      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-55-1596      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-64-1680      TCGA-67-3770      TCGA-67-3771      TCGA-67-3772 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-67-3773      TCGA-67-3774 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
D176V2, multiclass
[1] "Remove cluster labels:" "AQP10 MUTATED"         
clus
  AQP10 MUTATED AQP10 WILD-TYPE 
              2              30 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-3398      TCGA-44-3918      TCGA-44-3919 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-44-4112      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-55-1596      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-64-1680      TCGA-67-3770      TCGA-67-3771      TCGA-67-3772 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
     TCGA-67-3773      TCGA-67-3774 
"AQP10 WILD-TYPE" "AQP10 WILD-TYPE" 
D176V3, multiclass
        clus
vv       AQP10 MUTATED AQP10 WILD-TYPE
  CLUS_1             0              70
  CLUS_2             5              63
  CLUS_3             1              33
D176V4, multiclass
        clus
vv       AQP10 MUTATED AQP10 WILD-TYPE
  CLUS_1             1              33
  CLUS_2             0              33
  CLUS_3             4              39
D176V5, multiclass
        clus
vv       AQP10 MUTATED AQP10 WILD-TYPE
  CLUS_1             2              71
  CLUS_2             1              22
  CLUS_3             2              37
D176V6, multiclass
        clus
vv       AQP10 MUTATED AQP10 WILD-TYPE
  CLUS_1             2              75
  CLUS_2             1              25
  CLUS_3             2              30
D176V7, multiclass
        clus
vv       AQP10 MUTATED AQP10 WILD-TYPE
  CLUS_1             2              47
  CLUS_2             3              66
  CLUS_3             1              52
D176V8, multiclass
        clus
vv       AQP10 MUTATED AQP10 WILD-TYPE
  CLUS_1             2              48
  CLUS_2             2              66
  CLUS_3             2              51
D176V9, multiclass
        clus
vv       AQP10 MUTATED AQP10 WILD-TYPE
  CLUS_1             2              57
  CLUS_2             2              78
  CLUS_3             2              27
D176V10, multiclass
        clus
vv       AQP10 MUTATED AQP10 WILD-TYPE
  CLUS_1             2              18
  CLUS_2             3              88
  CLUS_3             1              56
D176V11, multiclass
        clus
vv       AQP10 MUTATED AQP10 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             2              33
  CLUS_3             0              24
D176V12, multiclass
        clus
vv       AQP10 MUTATED AQP10 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             2              44
  CLUS_3             1              47

Clustering(177) Variable = P2RX7 MUTATION ANALYSIS
D177V1, multiclass
D177V2, multiclass
D177V3, multiclass
        clus
vv       P2RX7 MUTATED P2RX7 WILD-TYPE
  CLUS_1             1              69
  CLUS_2             3              65
  CLUS_3             0              34
D177V4, multiclass
        clus
vv       P2RX7 MUTATED P2RX7 WILD-TYPE
  CLUS_1             0              34
  CLUS_2             2              31
  CLUS_3             1              42
D177V5, multiclass
        clus
vv       P2RX7 MUTATED P2RX7 WILD-TYPE
  CLUS_1             3              70
  CLUS_2             0              23
  CLUS_3             1              38
D177V6, multiclass
        clus
vv       P2RX7 MUTATED P2RX7 WILD-TYPE
  CLUS_1             2              75
  CLUS_2             1              25
  CLUS_3             1              31
D177V7, multiclass
        clus
vv       P2RX7 MUTATED P2RX7 WILD-TYPE
  CLUS_1             1              48
  CLUS_2             1              68
  CLUS_3             2              51
D177V8, multiclass
        clus
vv       P2RX7 MUTATED P2RX7 WILD-TYPE
  CLUS_1             1              49
  CLUS_2             2              66
  CLUS_3             1              52
D177V9, multiclass
        clus
vv       P2RX7 MUTATED P2RX7 WILD-TYPE
  CLUS_1             0              59
  CLUS_2             4              76
  CLUS_3             0              29
D177V10, multiclass
        clus
vv       P2RX7 MUTATED P2RX7 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             4              87
  CLUS_3             0              57
D177V11, multiclass
        clus
vv       P2RX7 MUTATED P2RX7 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             2              33
  CLUS_3             0              24
D177V12, multiclass
        clus
vv       P2RX7 MUTATED P2RX7 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             2              44
  CLUS_3             1              47

Clustering(178) Variable = NETO1 MUTATION ANALYSIS
D178V1, multiclass
[1] "Remove cluster labels:" "NETO1 MUTATED"         
clus
  NETO1 MUTATED NETO1 WILD-TYPE 
              2              30 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2656      TCGA-44-2657 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3919 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-44-4112      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-55-1596      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-64-1680      TCGA-67-3770      TCGA-67-3771      TCGA-67-3772 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-67-3773      TCGA-67-3774 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
D178V2, multiclass
[1] "Remove cluster labels:" "NETO1 MUTATED"         
clus
  NETO1 MUTATED NETO1 WILD-TYPE 
              2              30 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2656      TCGA-44-2657 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3919 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-44-4112      TCGA-55-1592      TCGA-55-1594      TCGA-55-1595 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-55-1596      TCGA-64-1676      TCGA-64-1677      TCGA-64-1678 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-64-1680      TCGA-67-3770      TCGA-67-3771      TCGA-67-3772 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
     TCGA-67-3773      TCGA-67-3774 
"NETO1 WILD-TYPE" "NETO1 WILD-TYPE" 
D178V3, multiclass
        clus
vv       NETO1 MUTATED NETO1 WILD-TYPE
  CLUS_1             2              68
  CLUS_2             7              61
  CLUS_3             5              29
D178V4, multiclass
        clus
vv       NETO1 MUTATED NETO1 WILD-TYPE
  CLUS_1             3              31
  CLUS_2             2              31
  CLUS_3             5              38
D178V5, multiclass
        clus
vv       NETO1 MUTATED NETO1 WILD-TYPE
  CLUS_1             8              65
  CLUS_2             1              22
  CLUS_3             3              36
D178V6, multiclass
        clus
vv       NETO1 MUTATED NETO1 WILD-TYPE
  CLUS_1             8              69
  CLUS_2             2              24
  CLUS_3             2              30
D178V7, multiclass
        clus
vv       NETO1 MUTATED NETO1 WILD-TYPE
  CLUS_1             2              47
  CLUS_2             5              64
  CLUS_3             7              46
D178V8, multiclass
        clus
vv       NETO1 MUTATED NETO1 WILD-TYPE
  CLUS_1             2              48
  CLUS_2             6              62
  CLUS_3             6              47
D178V9, multiclass
        clus
vv       NETO1 MUTATED NETO1 WILD-TYPE
  CLUS_1             6              53
  CLUS_2             7              73
  CLUS_3             1              28
D178V10, multiclass
        clus
vv       NETO1 MUTATED NETO1 WILD-TYPE
  CLUS_1             2              18
  CLUS_2             8              83
  CLUS_3             4              53
D178V11, multiclass
        clus
vv       NETO1 MUTATED NETO1 WILD-TYPE
  CLUS_1             5              41
  CLUS_2             4              31
  CLUS_3             1              23
D178V12, multiclass
        clus
vv       NETO1 MUTATED NETO1 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             4              42
  CLUS_3             6              42

Clustering(179) Variable = MGAT4C MUTATION ANALYSIS
D179V1, multiclass
        clus
vv       MGAT4C MUTATED MGAT4C WILD-TYPE
  CLUS_1              0                5
  CLUS_2              1                8
  CLUS_3              0               12
  CLUS_4              2                4
D179V2, multiclass
        clus
vv       MGAT4C MUTATED MGAT4C WILD-TYPE
  CLUS_1              2                5
  CLUS_2              0               13
  CLUS_3              1               11
D179V3, multiclass
        clus
vv       MGAT4C MUTATED MGAT4C WILD-TYPE
  CLUS_1              2               68
  CLUS_2              3               65
  CLUS_3              2               32
D179V4, multiclass
        clus
vv       MGAT4C MUTATED MGAT4C WILD-TYPE
  CLUS_1              1               33
  CLUS_2              2               31
  CLUS_3              1               42
D179V5, multiclass
        clus
vv       MGAT4C MUTATED MGAT4C WILD-TYPE
  CLUS_1              6               67
  CLUS_2              0               23
  CLUS_3              1               38
D179V6, multiclass
        clus
vv       MGAT4C MUTATED MGAT4C WILD-TYPE
  CLUS_1              5               72
  CLUS_2              1               25
  CLUS_3              1               31
D179V7, multiclass
        clus
vv       MGAT4C MUTATED MGAT4C WILD-TYPE
  CLUS_1              2               47
  CLUS_2              4               65
  CLUS_3              1               52
D179V8, multiclass
        clus
vv       MGAT4C MUTATED MGAT4C WILD-TYPE
  CLUS_1              3               47
  CLUS_2              2               66
  CLUS_3              2               51
D179V9, multiclass
        clus
vv       MGAT4C MUTATED MGAT4C WILD-TYPE
  CLUS_1              3               56
  CLUS_2              4               76
  CLUS_3              0               29
D179V10, multiclass
        clus
vv       MGAT4C MUTATED MGAT4C WILD-TYPE
  CLUS_1              0               20
  CLUS_2              4               87
  CLUS_3              3               54
D179V11, multiclass
        clus
vv       MGAT4C MUTATED MGAT4C WILD-TYPE
  CLUS_1              2               44
  CLUS_2              2               33
  CLUS_3              0               24
D179V12, multiclass
        clus
vv       MGAT4C MUTATED MGAT4C WILD-TYPE
  CLUS_1              0               11
  CLUS_2              2               44
  CLUS_3              2               46

Clustering(180) Variable = SLC34A2 MUTATION ANALYSIS
D180V1, multiclass
[1] "Remove cluster labels:" "SLC34A2 MUTATED"       
clus
  SLC34A2 MUTATED SLC34A2 WILD-TYPE 
                1                31 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2656 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3398 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-55-1594 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-64-1676        TCGA-64-1677 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1680        TCGA-67-3770        TCGA-67-3771 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
D180V2, multiclass
[1] "Remove cluster labels:" "SLC34A2 MUTATED"       
clus
  SLC34A2 MUTATED SLC34A2 WILD-TYPE 
                1                31 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2656 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3398 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-55-1594 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-64-1676        TCGA-64-1677 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1680        TCGA-67-3770        TCGA-67-3771 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" "SLC34A2 WILD-TYPE" 
D180V3, multiclass
        clus
vv       SLC34A2 MUTATED SLC34A2 WILD-TYPE
  CLUS_1               5                65
  CLUS_2               3                65
  CLUS_3               0                34
D180V4, multiclass
        clus
vv       SLC34A2 MUTATED SLC34A2 WILD-TYPE
  CLUS_1               2                32
  CLUS_2               2                31
  CLUS_3               1                42
D180V5, multiclass
        clus
vv       SLC34A2 MUTATED SLC34A2 WILD-TYPE
  CLUS_1               4                69
  CLUS_2               0                23
  CLUS_3               0                39
D180V6, multiclass
        clus
vv       SLC34A2 MUTATED SLC34A2 WILD-TYPE
  CLUS_1               3                74
  CLUS_2               1                25
  CLUS_3               0                32
D180V7, multiclass
        clus
vv       SLC34A2 MUTATED SLC34A2 WILD-TYPE
  CLUS_1               2                47
  CLUS_2               2                67
  CLUS_3               4                49
D180V8, multiclass
        clus
vv       SLC34A2 MUTATED SLC34A2 WILD-TYPE
  CLUS_1               2                48
  CLUS_2               4                64
  CLUS_3               2                51
D180V9, multiclass
        clus
vv       SLC34A2 MUTATED SLC34A2 WILD-TYPE
  CLUS_1               3                56
  CLUS_2               5                75
  CLUS_3               0                29
D180V10, multiclass
        clus
vv       SLC34A2 MUTATED SLC34A2 WILD-TYPE
  CLUS_1               0                20
  CLUS_2               5                86
  CLUS_3               3                54
D180V11, multiclass
        clus
vv       SLC34A2 MUTATED SLC34A2 WILD-TYPE
  CLUS_1               2                44
  CLUS_2               2                33
  CLUS_3               1                23
D180V12, multiclass
        clus
vv       SLC34A2 MUTATED SLC34A2 WILD-TYPE
  CLUS_1               0                11
  CLUS_2               3                43
  CLUS_3               2                46

Clustering(181) Variable = NTRK1 MUTATION ANALYSIS
D181V1, multiclass
[1] "Remove cluster labels:" "NTRK1 MUTATED"         
clus
  NTRK1 MUTATED NTRK1 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2666      TCGA-44-2668      TCGA-44-3398 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-44-3918      TCGA-44-3919      TCGA-44-4112      TCGA-55-1592 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1595      TCGA-55-1596      TCGA-64-1676 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-64-1677      TCGA-64-1678      TCGA-64-1680      TCGA-67-3771 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
D181V2, multiclass
[1] "Remove cluster labels:" "NTRK1 MUTATED"         
clus
  NTRK1 MUTATED NTRK1 WILD-TYPE 
              1              31 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2666      TCGA-44-2668      TCGA-44-3398 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-44-3918      TCGA-44-3919      TCGA-44-4112      TCGA-55-1592 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1595      TCGA-55-1596      TCGA-64-1676 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-64-1677      TCGA-64-1678      TCGA-64-1680      TCGA-67-3771 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
     TCGA-67-3772      TCGA-67-3773      TCGA-67-3774 
"NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" "NTRK1 WILD-TYPE" 
D181V3, multiclass
        clus
vv       NTRK1 MUTATED NTRK1 WILD-TYPE
  CLUS_1             2              68
  CLUS_2             3              65
  CLUS_3             2              32
D181V4, multiclass
        clus
vv       NTRK1 MUTATED NTRK1 WILD-TYPE
  CLUS_1             1              33
  CLUS_2             1              32
  CLUS_3             1              42
D181V5, multiclass
        clus
vv       NTRK1 MUTATED NTRK1 WILD-TYPE
  CLUS_1             4              69
  CLUS_2             1              22
  CLUS_3             0              39
D181V6, multiclass
        clus
vv       NTRK1 MUTATED NTRK1 WILD-TYPE
  CLUS_1             2              75
  CLUS_2             3              23
  CLUS_3             0              32
D181V7, multiclass
        clus
vv       NTRK1 MUTATED NTRK1 WILD-TYPE
  CLUS_1             1              48
  CLUS_2             2              67
  CLUS_3             4              49
D181V8, multiclass
        clus
vv       NTRK1 MUTATED NTRK1 WILD-TYPE
  CLUS_1             2              48
  CLUS_2             2              66
  CLUS_3             3              50
D181V9, multiclass
        clus
vv       NTRK1 MUTATED NTRK1 WILD-TYPE
  CLUS_1             1              58
  CLUS_2             6              74
  CLUS_3             0              29
D181V10, multiclass
        clus
vv       NTRK1 MUTATED NTRK1 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             6              85
  CLUS_3             1              56
D181V11, multiclass
        clus
vv       NTRK1 MUTATED NTRK1 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             1              34
  CLUS_3             0              24
D181V12, multiclass
        clus
vv       NTRK1 MUTATED NTRK1 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             2              44
  CLUS_3             1              47

Clustering(182) Variable = VEGFC MUTATION ANALYSIS
D182V1, multiclass
[1] "Remove cluster labels:" "VEGFC MUTATED"         
clus
  VEGFC MUTATED VEGFC WILD-TYPE 
              2              30 
     TCGA-05-4244      TCGA-05-4249      TCGA-35-3615      TCGA-35-4122 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-35-4123      TCGA-44-2655      TCGA-44-2656      TCGA-44-2657 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1677      TCGA-64-1678 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-64-1680      TCGA-67-3770      TCGA-67-3771      TCGA-67-3772 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-67-3773      TCGA-67-3774 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
D182V2, multiclass
[1] "Remove cluster labels:" "VEGFC MUTATED"         
clus
  VEGFC MUTATED VEGFC WILD-TYPE 
              2              30 
     TCGA-05-4244      TCGA-05-4249      TCGA-35-3615      TCGA-35-4122 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-35-4123      TCGA-44-2655      TCGA-44-2656      TCGA-44-2657 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-44-2659      TCGA-44-2661      TCGA-44-2662      TCGA-44-2665 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-44-2666      TCGA-44-2668      TCGA-44-3398      TCGA-44-3918 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-44-3919      TCGA-44-4112      TCGA-55-1592      TCGA-55-1594 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-55-1595      TCGA-55-1596      TCGA-64-1677      TCGA-64-1678 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-64-1680      TCGA-67-3770      TCGA-67-3771      TCGA-67-3772 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
     TCGA-67-3773      TCGA-67-3774 
"VEGFC WILD-TYPE" "VEGFC WILD-TYPE" 
D182V3, multiclass
        clus
vv       VEGFC MUTATED VEGFC WILD-TYPE
  CLUS_1             2              68
  CLUS_2             6              62
  CLUS_3             1              33
D182V4, multiclass
        clus
vv       VEGFC MUTATED VEGFC WILD-TYPE
  CLUS_1             0              34
  CLUS_2             3              30
  CLUS_3             2              41
D182V5, multiclass
        clus
vv       VEGFC MUTATED VEGFC WILD-TYPE
  CLUS_1             7              66
  CLUS_2             0              23
  CLUS_3             1              38
D182V6, multiclass
        clus
vv       VEGFC MUTATED VEGFC WILD-TYPE
  CLUS_1             7              70
  CLUS_2             1              25
  CLUS_3             0              32
D182V7, multiclass
        clus
vv       VEGFC MUTATED VEGFC WILD-TYPE
  CLUS_1             1              48
  CLUS_2             8              61
  CLUS_3             0              53
D182V8, multiclass
        clus
vv       VEGFC MUTATED VEGFC WILD-TYPE
  CLUS_1             6              44
  CLUS_2             1              67
  CLUS_3             2              51
D182V9, multiclass
        clus
vv       VEGFC MUTATED VEGFC WILD-TYPE
  CLUS_1             3              56
  CLUS_2             4              76
  CLUS_3             2              27
D182V10, multiclass
        clus
vv       VEGFC MUTATED VEGFC WILD-TYPE
  CLUS_1             0              20
  CLUS_2             6              85
  CLUS_3             3              54
D182V11, multiclass
        clus
vv       VEGFC MUTATED VEGFC WILD-TYPE
  CLUS_1             1              45
  CLUS_2             3              32
  CLUS_3             1              23
D182V12, multiclass
        clus
vv       VEGFC MUTATED VEGFC WILD-TYPE
  CLUS_1             0              11
  CLUS_2             3              43
  CLUS_3             2              46

Clustering(183) Variable = GC MUTATION ANALYSIS
D183V1, multiclass
[1] "Remove cluster labels:" "GC MUTATED"            
clus
  GC MUTATED GC WILD-TYPE 
           2           30 
  TCGA-05-4244   TCGA-05-4250   TCGA-35-3615   TCGA-35-4122   TCGA-35-4123 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-2655   TCGA-44-2656   TCGA-44-2657   TCGA-44-2659   TCGA-44-2661 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-2662   TCGA-44-2665   TCGA-44-2666   TCGA-44-3398   TCGA-44-3918 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-3919   TCGA-44-4112   TCGA-55-1592   TCGA-55-1594   TCGA-55-1595 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-55-1596   TCGA-64-1676   TCGA-64-1677   TCGA-64-1678   TCGA-64-1680 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-67-3770   TCGA-67-3771   TCGA-67-3772   TCGA-67-3773   TCGA-67-3774 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
D183V2, multiclass
[1] "Remove cluster labels:" "GC MUTATED"            
clus
  GC MUTATED GC WILD-TYPE 
           2           30 
  TCGA-05-4244   TCGA-05-4250   TCGA-35-3615   TCGA-35-4122   TCGA-35-4123 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-2655   TCGA-44-2656   TCGA-44-2657   TCGA-44-2659   TCGA-44-2661 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-2662   TCGA-44-2665   TCGA-44-2666   TCGA-44-3398   TCGA-44-3918 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-3919   TCGA-44-4112   TCGA-55-1592   TCGA-55-1594   TCGA-55-1595 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-55-1596   TCGA-64-1676   TCGA-64-1677   TCGA-64-1678   TCGA-64-1680 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-67-3770   TCGA-67-3771   TCGA-67-3772   TCGA-67-3773   TCGA-67-3774 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
D183V3, multiclass
        clus
vv       GC MUTATED GC WILD-TYPE
  CLUS_1          0           70
  CLUS_2          4           64
  CLUS_3          1           33
D183V4, multiclass
        clus
vv       GC MUTATED GC WILD-TYPE
  CLUS_1          1           33
  CLUS_2          1           32
  CLUS_3          1           42
D183V5, multiclass
        clus
vv       GC MUTATED GC WILD-TYPE
  CLUS_1          2           71
  CLUS_2          1           22
  CLUS_3          2           37
D183V6, multiclass
        clus
vv       GC MUTATED GC WILD-TYPE
  CLUS_1          1           76
  CLUS_2          2           24
  CLUS_3          2           30
D183V7, multiclass
        clus
vv       GC MUTATED GC WILD-TYPE
  CLUS_1          1           48
  CLUS_2          1           68
  CLUS_3          3           50
D183V8, multiclass
        clus
vv       GC MUTATED GC WILD-TYPE
  CLUS_1          1           49
  CLUS_2          2           66
  CLUS_3          2           51
D183V9, multiclass
        clus
vv       GC MUTATED GC WILD-TYPE
  CLUS_1          0           59
  CLUS_2          4           76
  CLUS_3          1           28
D183V10, multiclass
        clus
vv       GC MUTATED GC WILD-TYPE
  CLUS_1          1           19
  CLUS_2          4           87
  CLUS_3          0           57
D183V11, multiclass
[1] "Remove cluster labels:" "GC MUTATED"            
clus
  GC MUTATED GC WILD-TYPE 
           2          103 
  TCGA-05-4384   TCGA-05-4390   TCGA-05-4405   TCGA-05-4410   TCGA-05-4415 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-4417   TCGA-05-4424   TCGA-05-4425   TCGA-05-4427   TCGA-05-4433 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-5420   TCGA-05-5423   TCGA-05-5425   TCGA-05-5428   TCGA-05-5429 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-5715   TCGA-35-5375   TCGA-38-4631   TCGA-38-4632   TCGA-38-6178 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-5643   TCGA-44-5645   TCGA-44-6144   TCGA-44-6145   TCGA-44-6146 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-6147   TCGA-44-6148   TCGA-44-6774   TCGA-44-6775   TCGA-44-6776 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-6777   TCGA-44-6778   TCGA-44-6779   TCGA-49-4487   TCGA-49-4488 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-49-4490   TCGA-49-4512   TCGA-49-4514   TCGA-49-6742   TCGA-49-6743 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-49-6744   TCGA-49-6745   TCGA-49-6767   TCGA-50-5044   TCGA-50-5045 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-5049   TCGA-50-5051   TCGA-50-5055   TCGA-50-5066   TCGA-50-5068 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-5072   TCGA-50-5930   TCGA-50-5931   TCGA-50-5932   TCGA-50-5933 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-5935   TCGA-50-5936   TCGA-50-5939   TCGA-50-5941   TCGA-50-5942 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-5944   TCGA-50-5946   TCGA-50-6590   TCGA-50-6591   TCGA-50-6592 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-6593   TCGA-50-6594   TCGA-50-6595   TCGA-50-6597   TCGA-55-5899 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-55-6543   TCGA-55-6642   TCGA-55-6712   TCGA-64-5774   TCGA-64-5775 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-64-5778   TCGA-64-5781   TCGA-64-5815   TCGA-67-4679   TCGA-67-6215 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-67-6216   TCGA-67-6217   TCGA-71-6725   TCGA-73-4658   TCGA-73-4676 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-75-5122   TCGA-75-5125   TCGA-75-5126   TCGA-75-5146   TCGA-75-5147 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-75-6203   TCGA-75-6205   TCGA-75-6206   TCGA-75-6207   TCGA-75-6211 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-75-6212   TCGA-80-5611   TCGA-86-6562   TCGA-91-6828   TCGA-91-6829 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-91-6831   TCGA-91-6835   TCGA-91-6836 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
D183V12, multiclass
[1] "Remove cluster labels:" "GC MUTATED"            
clus
  GC MUTATED GC WILD-TYPE 
           2          103 
  TCGA-05-4384   TCGA-05-4390   TCGA-05-4405   TCGA-05-4410   TCGA-05-4415 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-4417   TCGA-05-4424   TCGA-05-4425   TCGA-05-4427   TCGA-05-4433 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-5420   TCGA-05-5423   TCGA-05-5425   TCGA-05-5428   TCGA-05-5429 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-05-5715   TCGA-35-5375   TCGA-38-4631   TCGA-38-4632   TCGA-38-6178 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-5643   TCGA-44-5645   TCGA-44-6144   TCGA-44-6145   TCGA-44-6146 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-6147   TCGA-44-6148   TCGA-44-6774   TCGA-44-6775   TCGA-44-6776 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-44-6777   TCGA-44-6778   TCGA-44-6779   TCGA-49-4487   TCGA-49-4488 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-49-4490   TCGA-49-4512   TCGA-49-4514   TCGA-49-6742   TCGA-49-6743 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-49-6744   TCGA-49-6745   TCGA-49-6767   TCGA-50-5044   TCGA-50-5045 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-5049   TCGA-50-5051   TCGA-50-5055   TCGA-50-5066   TCGA-50-5068 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-5072   TCGA-50-5930   TCGA-50-5931   TCGA-50-5932   TCGA-50-5933 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-5935   TCGA-50-5936   TCGA-50-5939   TCGA-50-5941   TCGA-50-5942 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-5944   TCGA-50-5946   TCGA-50-6590   TCGA-50-6591   TCGA-50-6592 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-50-6593   TCGA-50-6594   TCGA-50-6595   TCGA-50-6597   TCGA-55-5899 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-55-6543   TCGA-55-6642   TCGA-55-6712   TCGA-64-5774   TCGA-64-5775 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-64-5778   TCGA-64-5781   TCGA-64-5815   TCGA-67-4679   TCGA-67-6215 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-67-6216   TCGA-67-6217   TCGA-71-6725   TCGA-73-4658   TCGA-73-4676 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-75-5122   TCGA-75-5125   TCGA-75-5126   TCGA-75-5146   TCGA-75-5147 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-75-6203   TCGA-75-6205   TCGA-75-6206   TCGA-75-6207   TCGA-75-6211 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-75-6212   TCGA-80-5611   TCGA-86-6562   TCGA-91-6828   TCGA-91-6829 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 
  TCGA-91-6831   TCGA-91-6835   TCGA-91-6836 
"GC WILD-TYPE" "GC WILD-TYPE" "GC WILD-TYPE" 

Clustering(184) Variable = CTCFL MUTATION ANALYSIS
D184V1, multiclass
[1] "Remove cluster labels:" "CTCFL MUTATED"         
clus
  CTCFL MUTATED CTCFL WILD-TYPE 
              2              30 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2666      TCGA-44-2668      TCGA-44-3398 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-44-3918      TCGA-44-3919      TCGA-44-4112      TCGA-55-1592 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1595      TCGA-55-1596      TCGA-64-1677 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3771      TCGA-67-3772 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-67-3773      TCGA-67-3774 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
D184V2, multiclass
[1] "Remove cluster labels:" "CTCFL MUTATED"         
clus
  CTCFL MUTATED CTCFL WILD-TYPE 
              2              30 
     TCGA-05-4244      TCGA-05-4249      TCGA-05-4250      TCGA-35-3615 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-35-4122      TCGA-35-4123      TCGA-44-2655      TCGA-44-2656 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-44-2657      TCGA-44-2659      TCGA-44-2661      TCGA-44-2662 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-44-2665      TCGA-44-2666      TCGA-44-2668      TCGA-44-3398 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-44-3918      TCGA-44-3919      TCGA-44-4112      TCGA-55-1592 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-55-1594      TCGA-55-1595      TCGA-55-1596      TCGA-64-1677 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-64-1678      TCGA-64-1680      TCGA-67-3771      TCGA-67-3772 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
     TCGA-67-3773      TCGA-67-3774 
"CTCFL WILD-TYPE" "CTCFL WILD-TYPE" 
D184V3, multiclass
        clus
vv       CTCFL MUTATED CTCFL WILD-TYPE
  CLUS_1             5              65
  CLUS_2             3              65
  CLUS_3             3              31
D184V4, multiclass
        clus
vv       CTCFL MUTATED CTCFL WILD-TYPE
  CLUS_1             2              32
  CLUS_2             3              30
  CLUS_3             3              40
D184V5, multiclass
        clus
vv       CTCFL MUTATED CTCFL WILD-TYPE
  CLUS_1             5              68
  CLUS_2             0              23
  CLUS_3             2              37
D184V6, multiclass
        clus
vv       CTCFL MUTATED CTCFL WILD-TYPE
  CLUS_1             5              72
  CLUS_2             1              25
  CLUS_3             1              31
D184V7, multiclass
        clus
vv       CTCFL MUTATED CTCFL WILD-TYPE
  CLUS_1             1              48
  CLUS_2             6              63
  CLUS_3             4              49
D184V8, multiclass
        clus
vv       CTCFL MUTATED CTCFL WILD-TYPE
  CLUS_1             5              45
  CLUS_2             3              65
  CLUS_3             3              50
D184V9, multiclass
        clus
vv       CTCFL MUTATED CTCFL WILD-TYPE
  CLUS_1             3              56
  CLUS_2             7              73
  CLUS_3             1              28
D184V10, multiclass
        clus
vv       CTCFL MUTATED CTCFL WILD-TYPE
  CLUS_1             0              20
  CLUS_2             8              83
  CLUS_3             3              54
D184V11, multiclass
        clus
vv       CTCFL MUTATED CTCFL WILD-TYPE
  CLUS_1             3              43
  CLUS_2             4              31
  CLUS_3             1              23
D184V12, multiclass
        clus
vv       CTCFL MUTATED CTCFL WILD-TYPE
  CLUS_1             0              11
  CLUS_2             5              41
  CLUS_3             3              45

Clustering(185) Variable = DYTN MUTATION ANALYSIS
D185V1, multiclass
        clus
vv       DYTN MUTATED DYTN WILD-TYPE
  CLUS_1            0              5
  CLUS_2            1              8
  CLUS_3            1             11
  CLUS_4            1              5
D185V2, multiclass
        clus
vv       DYTN MUTATED DYTN WILD-TYPE
  CLUS_1            1              6
  CLUS_2            1             12
  CLUS_3            1             11
D185V3, multiclass
        clus
vv       DYTN MUTATED DYTN WILD-TYPE
  CLUS_1            4             66
  CLUS_2            3             65
  CLUS_3            3             31
D185V4, multiclass
        clus
vv       DYTN MUTATED DYTN WILD-TYPE
  CLUS_1            3             31
  CLUS_2            2             31
  CLUS_3            2             41
D185V5, multiclass
        clus
vv       DYTN MUTATED DYTN WILD-TYPE
  CLUS_1            5             68
  CLUS_2            1             22
  CLUS_3            2             37
D185V6, multiclass
        clus
vv       DYTN MUTATED DYTN WILD-TYPE
  CLUS_1            5             72
  CLUS_2            1             25
  CLUS_3            2             30
D185V7, multiclass
        clus
vv       DYTN MUTATED DYTN WILD-TYPE
  CLUS_1            2             47
  CLUS_2            4             65
  CLUS_3            4             49
D185V8, multiclass
        clus
vv       DYTN MUTATED DYTN WILD-TYPE
  CLUS_1            1             49
  CLUS_2            2             66
  CLUS_3            7             46
D185V9, multiclass
        clus
vv       DYTN MUTATED DYTN WILD-TYPE
  CLUS_1            2             57
  CLUS_2            5             75
  CLUS_3            3             26
D185V10, multiclass
        clus
vv       DYTN MUTATED DYTN WILD-TYPE
  CLUS_1            1             19
  CLUS_2            7             84
  CLUS_3            2             55
D185V11, multiclass
        clus
vv       DYTN MUTATED DYTN WILD-TYPE
  CLUS_1            1             45
  CLUS_2            4             31
  CLUS_3            1             23
D185V12, multiclass
        clus
vv       DYTN MUTATED DYTN WILD-TYPE
  CLUS_1            1             10
  CLUS_2            4             42
  CLUS_3            1             47

Clustering(186) Variable = EHHADH MUTATION ANALYSIS
D186V1, multiclass
[1] "Remove cluster labels:" "EHHADH MUTATED"        
clus
  EHHADH MUTATED EHHADH WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-35-4123       TCGA-44-2655       TCGA-44-2656       TCGA-44-2657 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-44-2659       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3398       TCGA-44-3918 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
D186V2, multiclass
[1] "Remove cluster labels:" "EHHADH MUTATED"        
clus
  EHHADH MUTATED EHHADH WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-35-4123       TCGA-44-2655       TCGA-44-2656       TCGA-44-2657 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-44-2659       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3398       TCGA-44-3918 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1594 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-55-1595       TCGA-55-1596       TCGA-64-1676       TCGA-64-1677 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"EHHADH WILD-TYPE" "EHHADH WILD-TYPE" "EHHADH WILD-TYPE" 
D186V3, multiclass
        clus
vv       EHHADH MUTATED EHHADH WILD-TYPE
  CLUS_1              0               70
  CLUS_2              3               65
  CLUS_3              1               33
D186V4, multiclass
        clus
vv       EHHADH MUTATED EHHADH WILD-TYPE
  CLUS_1              0               34
  CLUS_2              1               32
  CLUS_3              2               41
D186V5, multiclass
        clus
vv       EHHADH MUTATED EHHADH WILD-TYPE
  CLUS_1              3               70
  CLUS_2              0               23
  CLUS_3              1               38
D186V6, multiclass
        clus
vv       EHHADH MUTATED EHHADH WILD-TYPE
  CLUS_1              3               74
  CLUS_2              1               25
  CLUS_3              0               32
D186V7, multiclass
        clus
vv       EHHADH MUTATED EHHADH WILD-TYPE
  CLUS_1              0               49
  CLUS_2              3               66
  CLUS_3              1               52
D186V8, multiclass
        clus
vv       EHHADH MUTATED EHHADH WILD-TYPE
  CLUS_1              3               47
  CLUS_2              1               67
  CLUS_3              0               53
D186V9, multiclass
        clus
vv       EHHADH MUTATED EHHADH WILD-TYPE
  CLUS_1              2               57
  CLUS_2              2               78
  CLUS_3              0               29
D186V10, multiclass
        clus
vv       EHHADH MUTATED EHHADH WILD-TYPE
  CLUS_1              0               20
  CLUS_2              2               89
  CLUS_3              2               55
D186V11, multiclass
        clus
vv       EHHADH MUTATED EHHADH WILD-TYPE
  CLUS_1              2               44
  CLUS_2              1               34
  CLUS_3              0               24
D186V12, multiclass
        clus
vv       EHHADH MUTATED EHHADH WILD-TYPE
  CLUS_1              0               11
  CLUS_2              1               45
  CLUS_3              2               46

Clustering(187) Variable = COL4A2 MUTATION ANALYSIS
D187V1, multiclass
        clus
vv       COL4A2 MUTATED COL4A2 WILD-TYPE
  CLUS_1              0                5
  CLUS_2              2                7
  CLUS_3              2               10
  CLUS_4              0                6
D187V2, multiclass
        clus
vv       COL4A2 MUTATED COL4A2 WILD-TYPE
  CLUS_1              0                7
  CLUS_2              3               10
  CLUS_3              1               11
D187V3, multiclass
        clus
vv       COL4A2 MUTATED COL4A2 WILD-TYPE
  CLUS_1              3               67
  CLUS_2              5               63
  CLUS_3              3               31
D187V4, multiclass
        clus
vv       COL4A2 MUTATED COL4A2 WILD-TYPE
  CLUS_1              1               33
  CLUS_2              6               27
  CLUS_3              1               42
D187V5, multiclass
        clus
vv       COL4A2 MUTATED COL4A2 WILD-TYPE
  CLUS_1              4               69
  CLUS_2              2               21
  CLUS_3              3               36
D187V6, multiclass
        clus
vv       COL4A2 MUTATED COL4A2 WILD-TYPE
  CLUS_1              5               72
  CLUS_2              3               23
  CLUS_3              1               31
D187V7, multiclass
        clus
vv       COL4A2 MUTATED COL4A2 WILD-TYPE
  CLUS_1              2               47
  CLUS_2              7               62
  CLUS_3              2               51
D187V8, multiclass
        clus
vv       COL4A2 MUTATED COL4A2 WILD-TYPE
  CLUS_1              5               45
  CLUS_2              4               64
  CLUS_3              2               51
D187V9, multiclass
        clus
vv       COL4A2 MUTATED COL4A2 WILD-TYPE
  CLUS_1              3               56
  CLUS_2              7               73
  CLUS_3              1               28
D187V10, multiclass
        clus
vv       COL4A2 MUTATED COL4A2 WILD-TYPE
  CLUS_1              2               18
  CLUS_2              6               85
  CLUS_3              3               54
D187V11, multiclass
        clus
vv       COL4A2 MUTATED COL4A2 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              1               34
  CLUS_3              2               22
D187V12, multiclass
        clus
vv       COL4A2 MUTATED COL4A2 WILD-TYPE
  CLUS_1              1               10
  CLUS_2              1               45
  CLUS_3              3               45

Clustering(188) Variable = ABCG5 MUTATION ANALYSIS
D188V1, multiclass
D188V2, multiclass
D188V3, multiclass
        clus
vv       ABCG5 MUTATED ABCG5 WILD-TYPE
  CLUS_1             3              67
  CLUS_2             4              64
  CLUS_3             2              32
D188V4, multiclass
        clus
vv       ABCG5 MUTATED ABCG5 WILD-TYPE
  CLUS_1             3              31
  CLUS_2             3              30
  CLUS_3             0              43
D188V5, multiclass
        clus
vv       ABCG5 MUTATED ABCG5 WILD-TYPE
  CLUS_1             3              70
  CLUS_2             1              22
  CLUS_3             3              36
D188V6, multiclass
        clus
vv       ABCG5 MUTATED ABCG5 WILD-TYPE
  CLUS_1             1              76
  CLUS_2             2              24
  CLUS_3             4              28
D188V7, multiclass
        clus
vv       ABCG5 MUTATED ABCG5 WILD-TYPE
  CLUS_1             2              47
  CLUS_2             3              66
  CLUS_3             4              49
D188V8, multiclass
        clus
vv       ABCG5 MUTATED ABCG5 WILD-TYPE
  CLUS_1             3              47
  CLUS_2             4              64
  CLUS_3             2              51
D188V9, multiclass
        clus
vv       ABCG5 MUTATED ABCG5 WILD-TYPE
  CLUS_1             3              56
  CLUS_2             4              76
  CLUS_3             2              27
D188V10, multiclass
        clus
vv       ABCG5 MUTATED ABCG5 WILD-TYPE
  CLUS_1             0              20
  CLUS_2             6              85
  CLUS_3             3              54
D188V11, multiclass
        clus
vv       ABCG5 MUTATED ABCG5 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             2              33
  CLUS_3             1              23
D188V12, multiclass
        clus
vv       ABCG5 MUTATED ABCG5 WILD-TYPE
  CLUS_1             1              10
  CLUS_2             2              44
  CLUS_3             3              45

Clustering(189) Variable = OR10G2 MUTATION ANALYSIS
D189V1, multiclass
D189V2, multiclass
D189V3, multiclass
        clus
vv       OR10G2 MUTATED OR10G2 WILD-TYPE
  CLUS_1              2               68
  CLUS_2              3               65
  CLUS_3              0               34
D189V4, multiclass
        clus
vv       OR10G2 MUTATED OR10G2 WILD-TYPE
  CLUS_1              1               33
  CLUS_2              1               32
  CLUS_3              3               40
D189V5, multiclass
        clus
vv       OR10G2 MUTATED OR10G2 WILD-TYPE
  CLUS_1              4               69
  CLUS_2              0               23
  CLUS_3              0               39
D189V6, multiclass
        clus
vv       OR10G2 MUTATED OR10G2 WILD-TYPE
  CLUS_1              4               73
  CLUS_2              0               26
  CLUS_3              0               32
D189V7, multiclass
        clus
vv       OR10G2 MUTATED OR10G2 WILD-TYPE
  CLUS_1              1               48
  CLUS_2              2               67
  CLUS_3              2               51
D189V8, multiclass
        clus
vv       OR10G2 MUTATED OR10G2 WILD-TYPE
  CLUS_1              0               50
  CLUS_2              2               66
  CLUS_3              3               50
D189V9, multiclass
        clus
vv       OR10G2 MUTATED OR10G2 WILD-TYPE
  CLUS_1              0               59
  CLUS_2              2               78
  CLUS_3              3               26
D189V10, multiclass
        clus
vv       OR10G2 MUTATED OR10G2 WILD-TYPE
  CLUS_1              0               20
  CLUS_2              4               87
  CLUS_3              1               56
D189V11, multiclass
        clus
vv       OR10G2 MUTATED OR10G2 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              2               33
  CLUS_3              2               22
D189V12, multiclass
        clus
vv       OR10G2 MUTATED OR10G2 WILD-TYPE
  CLUS_1              1               10
  CLUS_2              3               43
  CLUS_3              1               47

Clustering(190) Variable = CYP4V2 MUTATION ANALYSIS
D190V1, multiclass
D190V2, multiclass
D190V3, multiclass
        clus
vv       CYP4V2 MUTATED CYP4V2 WILD-TYPE
  CLUS_1              4               66
  CLUS_2              2               66
  CLUS_3              0               34
D190V4, multiclass
        clus
vv       CYP4V2 MUTATED CYP4V2 WILD-TYPE
  CLUS_1              2               32
  CLUS_2              3               30
  CLUS_3              0               43
D190V5, multiclass
        clus
vv       CYP4V2 MUTATED CYP4V2 WILD-TYPE
  CLUS_1              4               69
  CLUS_2              1               22
  CLUS_3              0               39
D190V6, multiclass
        clus
vv       CYP4V2 MUTATED CYP4V2 WILD-TYPE
  CLUS_1              3               74
  CLUS_2              2               24
  CLUS_3              0               32
D190V7, multiclass
        clus
vv       CYP4V2 MUTATED CYP4V2 WILD-TYPE
  CLUS_1              2               47
  CLUS_2              3               66
  CLUS_3              1               52
D190V8, multiclass
        clus
vv       CYP4V2 MUTATED CYP4V2 WILD-TYPE
  CLUS_1              2               48
  CLUS_2              3               65
  CLUS_3              1               52
D190V9, multiclass
        clus
vv       CYP4V2 MUTATED CYP4V2 WILD-TYPE
  CLUS_1              2               57
  CLUS_2              3               77
  CLUS_3              1               28
D190V10, multiclass
        clus
vv       CYP4V2 MUTATED CYP4V2 WILD-TYPE
  CLUS_1              0               20
  CLUS_2              4               87
  CLUS_3              2               55
D190V11, multiclass
        clus
vv       CYP4V2 MUTATED CYP4V2 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              1               34
  CLUS_3              1               23
D190V12, multiclass
        clus
vv       CYP4V2 MUTATED CYP4V2 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              2               44
  CLUS_3              3               45

Clustering(191) Variable = EIF2C1 MUTATION ANALYSIS
D191V1, multiclass
[1] "Remove cluster labels:" "EIF2C1 MUTATED"        
clus
  EIF2C1 MUTATED EIF2C1 WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-44-3918       TCGA-44-3919       TCGA-44-4112       TCGA-55-1592 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-55-1594       TCGA-55-1595       TCGA-55-1596       TCGA-64-1677 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
D191V2, multiclass
[1] "Remove cluster labels:" "EIF2C1 MUTATED"        
clus
  EIF2C1 MUTATED EIF2C1 WILD-TYPE 
               1               31 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2659       TCGA-44-2661       TCGA-44-2662 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-44-2665       TCGA-44-2666       TCGA-44-2668       TCGA-44-3398 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-44-3918       TCGA-44-3919       TCGA-44-4112       TCGA-55-1592 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-55-1594       TCGA-55-1595       TCGA-55-1596       TCGA-64-1677 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-64-1678       TCGA-64-1680       TCGA-67-3770       TCGA-67-3771 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
      TCGA-67-3772       TCGA-67-3773       TCGA-67-3774 
"EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" "EIF2C1 WILD-TYPE" 
D191V3, multiclass
        clus
vv       EIF2C1 MUTATED EIF2C1 WILD-TYPE
  CLUS_1              1               69
  CLUS_2              3               65
  CLUS_3              0               34
D191V4, multiclass
        clus
vv       EIF2C1 MUTATED EIF2C1 WILD-TYPE
  CLUS_1              0               34
  CLUS_2              1               32
  CLUS_3              2               41
D191V5, multiclass
        clus
vv       EIF2C1 MUTATED EIF2C1 WILD-TYPE
  CLUS_1              4               69
  CLUS_2              0               23
  CLUS_3              0               39
D191V6, multiclass
        clus
vv       EIF2C1 MUTATED EIF2C1 WILD-TYPE
  CLUS_1              3               74
  CLUS_2              1               25
  CLUS_3              0               32
D191V7, multiclass
        clus
vv       EIF2C1 MUTATED EIF2C1 WILD-TYPE
  CLUS_1              1               48
  CLUS_2              2               67
  CLUS_3              1               52
D191V8, multiclass
        clus
vv       EIF2C1 MUTATED EIF2C1 WILD-TYPE
  CLUS_1              1               49
  CLUS_2              2               66
  CLUS_3              1               52
D191V9, multiclass
        clus
vv       EIF2C1 MUTATED EIF2C1 WILD-TYPE
  CLUS_1              1               58
  CLUS_2              1               79
  CLUS_3              2               27
D191V10, multiclass
        clus
vv       EIF2C1 MUTATED EIF2C1 WILD-TYPE
  CLUS_1              0               20
  CLUS_2              3               88
  CLUS_3              1               56
D191V11, multiclass
        clus
vv       EIF2C1 MUTATED EIF2C1 WILD-TYPE
  CLUS_1              2               44
  CLUS_2              1               34
  CLUS_3              0               24
D191V12, multiclass
        clus
vv       EIF2C1 MUTATED EIF2C1 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              1               45
  CLUS_3              2               46

Clustering(192) Variable = CCDC39 MUTATION ANALYSIS
D192V1, multiclass
[1] "Remove cluster labels:" "CCDC39 MUTATED"        
clus
  CCDC39 MUTATED CCDC39 WILD-TYPE 
               2               30 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3398       TCGA-44-3918 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1595 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-55-1596       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-64-1680       TCGA-67-3770       TCGA-67-3771       TCGA-67-3772 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
D192V2, multiclass
[1] "Remove cluster labels:" "CCDC39 MUTATED"        
clus
  CCDC39 MUTATED CCDC39 WILD-TYPE 
               2               30 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2655       TCGA-44-2656 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-44-2657       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3398       TCGA-44-3918 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-44-3919       TCGA-44-4112       TCGA-55-1592       TCGA-55-1595 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-55-1596       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-64-1680       TCGA-67-3770       TCGA-67-3771       TCGA-67-3772 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"CCDC39 WILD-TYPE" "CCDC39 WILD-TYPE" 
D192V3, multiclass
        clus
vv       CCDC39 MUTATED CCDC39 WILD-TYPE
  CLUS_1              5               65
  CLUS_2              2               66
  CLUS_3              0               34
D192V4, multiclass
        clus
vv       CCDC39 MUTATED CCDC39 WILD-TYPE
  CLUS_1              0               34
  CLUS_2              2               31
  CLUS_3              1               42
D192V5, multiclass
        clus
vv       CCDC39 MUTATED CCDC39 WILD-TYPE
  CLUS_1              5               68
  CLUS_2              0               23
  CLUS_3              0               39
D192V6, multiclass
        clus
vv       CCDC39 MUTATED CCDC39 WILD-TYPE
  CLUS_1              5               72
  CLUS_2              0               26
  CLUS_3              0               32
D192V7, multiclass
        clus
vv       CCDC39 MUTATED CCDC39 WILD-TYPE
  CLUS_1              0               49
  CLUS_2              4               65
  CLUS_3              3               50
D192V8, multiclass
        clus
vv       CCDC39 MUTATED CCDC39 WILD-TYPE
  CLUS_1              3               47
  CLUS_2              1               67
  CLUS_3              3               50
D192V9, multiclass
        clus
vv       CCDC39 MUTATED CCDC39 WILD-TYPE
  CLUS_1              0               59
  CLUS_2              4               76
  CLUS_3              2               27
D192V10, multiclass
        clus
vv       CCDC39 MUTATED CCDC39 WILD-TYPE
  CLUS_1              2               18
  CLUS_2              4               87
  CLUS_3              0               57
D192V11, multiclass
        clus
vv       CCDC39 MUTATED CCDC39 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              1               34
  CLUS_3              1               23
D192V12, multiclass
        clus
vv       CCDC39 MUTATED CCDC39 WILD-TYPE
  CLUS_1              1               10
  CLUS_2              1               45
  CLUS_3              1               47

Clustering(193) Variable = FAM5C MUTATION ANALYSIS
D193V1, multiclass
        clus
vv       FAM5C MUTATED FAM5C WILD-TYPE
  CLUS_1             0               5
  CLUS_2             3               6
  CLUS_3             1              11
  CLUS_4             3               3
D193V2, multiclass
        clus
vv       FAM5C MUTATED FAM5C WILD-TYPE
  CLUS_1             3               4
  CLUS_2             2              11
  CLUS_3             2              10
D193V3, multiclass
        clus
vv       FAM5C MUTATED FAM5C WILD-TYPE
  CLUS_1             9              61
  CLUS_2             6              62
  CLUS_3            13              21
D193V4, multiclass
        clus
vv       FAM5C MUTATED FAM5C WILD-TYPE
  CLUS_1             7              27
  CLUS_2             6              27
  CLUS_3             7              36
D193V5, multiclass
        clus
vv       FAM5C MUTATED FAM5C WILD-TYPE
  CLUS_1            12              61
  CLUS_2             1              22
  CLUS_3             7              32
D193V6, multiclass
        clus
vv       FAM5C MUTATED FAM5C WILD-TYPE
  CLUS_1            12              65
  CLUS_2             1              25
  CLUS_3             7              25
D193V7, multiclass
        clus
vv       FAM5C MUTATED FAM5C WILD-TYPE
  CLUS_1             5              44
  CLUS_2            11              58
  CLUS_3            12              41
D193V8, multiclass
        clus
vv       FAM5C MUTATED FAM5C WILD-TYPE
  CLUS_1             8              42
  CLUS_2             7              61
  CLUS_3            13              40
D193V9, multiclass
        clus
vv       FAM5C MUTATED FAM5C WILD-TYPE
  CLUS_1             6              53
  CLUS_2            16              64
  CLUS_3             5              24
D193V10, multiclass
        clus
vv       FAM5C MUTATED FAM5C WILD-TYPE
  CLUS_1             3              17
  CLUS_2            18              73
  CLUS_3             6              51
D193V11, multiclass
        clus
vv       FAM5C MUTATED FAM5C WILD-TYPE
  CLUS_1             7              39
  CLUS_2             7              28
  CLUS_3             4              20
D193V12, multiclass
        clus
vv       FAM5C MUTATED FAM5C WILD-TYPE
  CLUS_1             2               9
  CLUS_2            11              35
  CLUS_3             5              43

Clustering(194) Variable = TKTL1 MUTATION ANALYSIS
D194V1, multiclass
D194V2, multiclass
D194V3, multiclass
        clus
vv       TKTL1 MUTATED TKTL1 WILD-TYPE
  CLUS_1             2              68
  CLUS_2             3              65
  CLUS_3             0              34
D194V4, multiclass
        clus
vv       TKTL1 MUTATED TKTL1 WILD-TYPE
  CLUS_1             1              33
  CLUS_2             1              32
  CLUS_3             1              42
D194V5, multiclass
        clus
vv       TKTL1 MUTATED TKTL1 WILD-TYPE
  CLUS_1             3              70
  CLUS_2             1              22
  CLUS_3             0              39
D194V6, multiclass
        clus
vv       TKTL1 MUTATED TKTL1 WILD-TYPE
  CLUS_1             2              75
  CLUS_2             2              24
  CLUS_3             0              32
D194V7, multiclass
        clus
vv       TKTL1 MUTATED TKTL1 WILD-TYPE
  CLUS_1             2              47
  CLUS_2             1              68
  CLUS_3             2              51
D194V8, multiclass
        clus
vv       TKTL1 MUTATED TKTL1 WILD-TYPE
  CLUS_1             0              50
  CLUS_2             3              65
  CLUS_3             2              51
D194V9, multiclass
        clus
vv       TKTL1 MUTATED TKTL1 WILD-TYPE
  CLUS_1             2              57
  CLUS_2             3              77
  CLUS_3             0              29
D194V10, multiclass
        clus
vv       TKTL1 MUTATED TKTL1 WILD-TYPE
  CLUS_1             1              19
  CLUS_2             3              88
  CLUS_3             1              56
D194V11, multiclass
        clus
vv       TKTL1 MUTATED TKTL1 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0              35
  CLUS_3             1              23
D194V12, multiclass
        clus
vv       TKTL1 MUTATED TKTL1 WILD-TYPE
  CLUS_1             0              11
  CLUS_2             1              45
  CLUS_3             2              46

Clustering(195) Variable = SLC22A6 MUTATION ANALYSIS
D195V1, multiclass
        clus
vv       SLC22A6 MUTATED SLC22A6 WILD-TYPE
  CLUS_1               1                 4
  CLUS_2               2                 7
  CLUS_3               1                11
  CLUS_4               1                 5
D195V2, multiclass
        clus
vv       SLC22A6 MUTATED SLC22A6 WILD-TYPE
  CLUS_1               1                 6
  CLUS_2               2                11
  CLUS_3               2                10
D195V3, multiclass
        clus
vv       SLC22A6 MUTATED SLC22A6 WILD-TYPE
  CLUS_1               4                66
  CLUS_2               2                66
  CLUS_3               2                32
D195V4, multiclass
        clus
vv       SLC22A6 MUTATED SLC22A6 WILD-TYPE
  CLUS_1               1                33
  CLUS_2               1                32
  CLUS_3               2                41
D195V5, multiclass
        clus
vv       SLC22A6 MUTATED SLC22A6 WILD-TYPE
  CLUS_1               5                68
  CLUS_2               0                23
  CLUS_3               2                37
D195V6, multiclass
        clus
vv       SLC22A6 MUTATED SLC22A6 WILD-TYPE
  CLUS_1               5                72
  CLUS_2               0                26
  CLUS_3               2                30
D195V7, multiclass
        clus
vv       SLC22A6 MUTATED SLC22A6 WILD-TYPE
  CLUS_1               2                47
  CLUS_2               4                65
  CLUS_3               2                51
D195V8, multiclass
        clus
vv       SLC22A6 MUTATED SLC22A6 WILD-TYPE
  CLUS_1               4                46
  CLUS_2               2                66
  CLUS_3               2                51
D195V9, multiclass
        clus
vv       SLC22A6 MUTATED SLC22A6 WILD-TYPE
  CLUS_1               1                58
  CLUS_2               5                75
  CLUS_3               2                27
D195V10, multiclass
        clus
vv       SLC22A6 MUTATED SLC22A6 WILD-TYPE
  CLUS_1               1                19
  CLUS_2               6                85
  CLUS_3               1                56
D195V11, multiclass
[1] "Remove cluster labels:" "SLC22A6 MUTATED"       
clus
  SLC22A6 MUTATED SLC22A6 WILD-TYPE 
                2               103 
       TCGA-05-4384        TCGA-05-4390        TCGA-05-4396        TCGA-05-4405 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-05-4410        TCGA-05-4415        TCGA-05-4417        TCGA-05-4424 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-05-4425        TCGA-05-4427        TCGA-05-4433        TCGA-05-5420 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-05-5423        TCGA-05-5425        TCGA-05-5428        TCGA-05-5429 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-05-5715        TCGA-35-5375        TCGA-38-4631        TCGA-38-4632 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-38-6178        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-44-6779        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6767        TCGA-50-5044 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-4679        TCGA-67-6215 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-73-4676        TCGA-75-5122        TCGA-75-5125        TCGA-75-5126 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-75-5146        TCGA-75-5147        TCGA-75-6203        TCGA-75-6205 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-75-6206        TCGA-75-6207        TCGA-75-6211        TCGA-75-6212 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-80-5611        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
D195V12, multiclass
[1] "Remove cluster labels:" "SLC22A6 MUTATED"       
clus
  SLC22A6 MUTATED SLC22A6 WILD-TYPE 
                2               103 
       TCGA-05-4384        TCGA-05-4390        TCGA-05-4396        TCGA-05-4405 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-05-4410        TCGA-05-4415        TCGA-05-4417        TCGA-05-4424 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-05-4425        TCGA-05-4427        TCGA-05-4433        TCGA-05-5420 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-05-5423        TCGA-05-5425        TCGA-05-5428        TCGA-05-5429 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-05-5715        TCGA-35-5375        TCGA-38-4631        TCGA-38-4632 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-38-6178        TCGA-44-5643        TCGA-44-5645        TCGA-44-6144 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-44-6779        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-49-4512        TCGA-49-4514        TCGA-49-6742        TCGA-49-6743 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-49-6744        TCGA-49-6745        TCGA-49-6767        TCGA-50-5044 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-50-5045        TCGA-50-5049        TCGA-50-5051        TCGA-50-5055 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-50-5066        TCGA-50-5068        TCGA-50-5072        TCGA-50-5930 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5932        TCGA-50-5933        TCGA-50-5935 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-50-5936        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-50-5944        TCGA-50-5946        TCGA-50-6590        TCGA-50-6591 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-50-6592        TCGA-50-6593        TCGA-50-6594        TCGA-50-6595 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-50-6597        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-4679        TCGA-67-6215 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-71-6725        TCGA-73-4658 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-73-4676        TCGA-75-5122        TCGA-75-5125        TCGA-75-5126 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-75-5146        TCGA-75-5147        TCGA-75-6203        TCGA-75-6205 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-75-6206        TCGA-75-6207        TCGA-75-6211        TCGA-75-6212 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-80-5611        TCGA-86-6562        TCGA-91-6828        TCGA-91-6829 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" "SLC22A6 WILD-TYPE" 

Clustering(196) Variable = PPP3CA MUTATION ANALYSIS
D196V1, multiclass
D196V2, multiclass
D196V3, multiclass
        clus
vv       PPP3CA MUTATED PPP3CA WILD-TYPE
  CLUS_1              0               70
  CLUS_2              1               67
  CLUS_3              2               32
D196V4, multiclass
[1] "Remove cluster labels:" "PPP3CA MUTATED"        
clus
  PPP3CA MUTATED PPP3CA WILD-TYPE 
               2              108 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4396       TCGA-05-4405 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4410       TCGA-05-4415       TCGA-05-4417       TCGA-05-4424 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4425       TCGA-05-4427       TCGA-05-4433       TCGA-05-5420 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-5423       TCGA-05-5425       TCGA-05-5428       TCGA-05-5429 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-5715       TCGA-35-5375       TCGA-38-4631       TCGA-38-4632 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-38-6178       TCGA-44-2656       TCGA-44-2665       TCGA-44-2666 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-2668       TCGA-44-3918       TCGA-44-4112       TCGA-44-5645 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4487 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4512       TCGA-49-4514 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-6742       TCGA-49-6743       TCGA-49-6744       TCGA-49-6745 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-6767       TCGA-50-5044       TCGA-50-5045       TCGA-50-5049 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5051       TCGA-50-5055       TCGA-50-5066       TCGA-50-5068 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5072       TCGA-50-5930       TCGA-50-5931       TCGA-50-5932 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5933       TCGA-50-5935       TCGA-50-5936       TCGA-50-5939 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5941       TCGA-50-5942       TCGA-50-5944       TCGA-50-5946 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-6590       TCGA-50-6591       TCGA-50-6592       TCGA-50-6593 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-6594       TCGA-50-6595       TCGA-50-6597       TCGA-55-5899 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-55-6543       TCGA-55-6642       TCGA-55-6712       TCGA-64-5774 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-64-5775       TCGA-64-5778       TCGA-64-5779       TCGA-64-5781 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-64-5815       TCGA-67-4679       TCGA-67-6215       TCGA-67-6216 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-67-6217       TCGA-71-6725       TCGA-73-4658       TCGA-75-5122 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-75-5125       TCGA-75-5126       TCGA-75-5146       TCGA-75-5147 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-75-6203       TCGA-75-6205       TCGA-75-6207       TCGA-75-6211 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-75-6212       TCGA-80-5611       TCGA-86-6562       TCGA-91-6828 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-91-6829       TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
D196V5, multiclass
        clus
vv       PPP3CA MUTATED PPP3CA WILD-TYPE
  CLUS_1              1               72
  CLUS_2              1               22
  CLUS_3              1               38
D196V6, multiclass
        clus
vv       PPP3CA MUTATED PPP3CA WILD-TYPE
  CLUS_1              0               77
  CLUS_2              2               24
  CLUS_3              1               31
D196V7, multiclass
        clus
vv       PPP3CA MUTATED PPP3CA WILD-TYPE
  CLUS_1              0               49
  CLUS_2              1               68
  CLUS_3              2               51
D196V8, multiclass
        clus
vv       PPP3CA MUTATED PPP3CA WILD-TYPE
  CLUS_1              1               49
  CLUS_2              2               66
  CLUS_3              0               53
D196V9, multiclass
        clus
vv       PPP3CA MUTATED PPP3CA WILD-TYPE
  CLUS_1              1               58
  CLUS_2              2               78
  CLUS_3              0               29
D196V10, multiclass
        clus
vv       PPP3CA MUTATED PPP3CA WILD-TYPE
  CLUS_1              0               20
  CLUS_2              2               89
  CLUS_3              1               56
D196V11, multiclass
[1] "Remove cluster labels:" "PPP3CA MUTATED"        
clus
  PPP3CA MUTATED PPP3CA WILD-TYPE 
               2              103 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4396       TCGA-05-4405 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4410       TCGA-05-4415       TCGA-05-4417       TCGA-05-4424 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4425       TCGA-05-4427       TCGA-05-4433       TCGA-05-5420 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-5423       TCGA-05-5425       TCGA-05-5428       TCGA-05-5429 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-5715       TCGA-35-5375       TCGA-38-4631       TCGA-38-4632 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-38-6178       TCGA-44-5645       TCGA-44-6144       TCGA-44-6145 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-6146       TCGA-44-6147       TCGA-44-6148       TCGA-44-6774 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-6775       TCGA-44-6776       TCGA-44-6777       TCGA-44-6778 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-6779       TCGA-49-4487       TCGA-49-4488       TCGA-49-4490 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-49-6767       TCGA-50-5044 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-6597       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-55-6712       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-4679 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-73-4658       TCGA-75-5122       TCGA-75-5125       TCGA-75-5126 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-75-5146       TCGA-75-5147       TCGA-75-6203       TCGA-75-6205 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-75-6206       TCGA-75-6207       TCGA-75-6211       TCGA-75-6212 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-80-5611       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
D196V12, multiclass
[1] "Remove cluster labels:" "PPP3CA MUTATED"        
clus
  PPP3CA MUTATED PPP3CA WILD-TYPE 
               2              103 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4396       TCGA-05-4405 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4410       TCGA-05-4415       TCGA-05-4417       TCGA-05-4424 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-4425       TCGA-05-4427       TCGA-05-4433       TCGA-05-5420 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-5423       TCGA-05-5425       TCGA-05-5428       TCGA-05-5429 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-05-5715       TCGA-35-5375       TCGA-38-4631       TCGA-38-4632 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-38-6178       TCGA-44-5645       TCGA-44-6144       TCGA-44-6145 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-6146       TCGA-44-6147       TCGA-44-6148       TCGA-44-6774 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-6775       TCGA-44-6776       TCGA-44-6777       TCGA-44-6778 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-44-6779       TCGA-49-4487       TCGA-49-4488       TCGA-49-4490 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-4512       TCGA-49-4514       TCGA-49-6742       TCGA-49-6743 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-49-6744       TCGA-49-6745       TCGA-49-6767       TCGA-50-5044 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5045       TCGA-50-5049       TCGA-50-5051       TCGA-50-5055 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5066       TCGA-50-5068       TCGA-50-5072       TCGA-50-5930 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5931       TCGA-50-5932       TCGA-50-5933       TCGA-50-5935 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5936       TCGA-50-5939       TCGA-50-5941       TCGA-50-5942 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-5944       TCGA-50-5946       TCGA-50-6590       TCGA-50-6591 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-6592       TCGA-50-6593       TCGA-50-6594       TCGA-50-6595 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-50-6597       TCGA-55-5899       TCGA-55-6543       TCGA-55-6642 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-55-6712       TCGA-64-5774       TCGA-64-5775       TCGA-64-5778 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-64-5779       TCGA-64-5781       TCGA-64-5815       TCGA-67-4679 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-67-6215       TCGA-67-6216       TCGA-67-6217       TCGA-71-6725 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-73-4658       TCGA-75-5122       TCGA-75-5125       TCGA-75-5126 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-75-5146       TCGA-75-5147       TCGA-75-6203       TCGA-75-6205 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-75-6206       TCGA-75-6207       TCGA-75-6211       TCGA-75-6212 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-80-5611       TCGA-86-6562       TCGA-91-6828       TCGA-91-6829 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 
      TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" "PPP3CA WILD-TYPE" 

Clustering(197) Variable = C20ORF132 MUTATION ANALYSIS
D197V1, multiclass
[1] "Remove cluster labels:" "C20ORF132 MUTATED"     
clus
  C20ORF132 MUTATED C20ORF132 WILD-TYPE 
                  2                  30 
         TCGA-05-4244          TCGA-05-4249          TCGA-05-4250 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-35-3615          TCGA-35-4122          TCGA-35-4123 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2661 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-44-2662          TCGA-44-2665          TCGA-44-2666 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-44-2668          TCGA-44-3398          TCGA-44-3918 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-55-1592 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-55-1594          TCGA-55-1595          TCGA-55-1596 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-64-1676          TCGA-64-1677          TCGA-64-1678 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-64-1680          TCGA-67-3770          TCGA-67-3771 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-67-3772          TCGA-67-3773          TCGA-67-3774 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
D197V2, multiclass
[1] "Remove cluster labels:" "C20ORF132 MUTATED"     
clus
  C20ORF132 MUTATED C20ORF132 WILD-TYPE 
                  2                  30 
         TCGA-05-4244          TCGA-05-4249          TCGA-05-4250 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-35-3615          TCGA-35-4122          TCGA-35-4123 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2661 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-44-2662          TCGA-44-2665          TCGA-44-2666 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-44-2668          TCGA-44-3398          TCGA-44-3918 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-44-3919          TCGA-44-4112          TCGA-55-1592 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-55-1594          TCGA-55-1595          TCGA-55-1596 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-64-1676          TCGA-64-1677          TCGA-64-1678 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-64-1680          TCGA-67-3770          TCGA-67-3771 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
         TCGA-67-3772          TCGA-67-3773          TCGA-67-3774 
"C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" "C20ORF132 WILD-TYPE" 
D197V3, multiclass
        clus
vv       C20ORF132 MUTATED C20ORF132 WILD-TYPE
  CLUS_1                 4                  66
  CLUS_2                 3                  65
  CLUS_3                 1                  33
D197V4, multiclass
        clus
vv       C20ORF132 MUTATED C20ORF132 WILD-TYPE
  CLUS_1                 0                  34
  CLUS_2                 4                  29
  CLUS_3                 1                  42
D197V5, multiclass
        clus
vv       C20ORF132 MUTATED C20ORF132 WILD-TYPE
  CLUS_1                 5                  68
  CLUS_2                 1                  22
  CLUS_3                 0                  39
D197V6, multiclass
        clus
vv       C20ORF132 MUTATED C20ORF132 WILD-TYPE
  CLUS_1                 4                  73
  CLUS_2                 2                  24
  CLUS_3                 0                  32
D197V7, multiclass
        clus
vv       C20ORF132 MUTATED C20ORF132 WILD-TYPE
  CLUS_1                 3                  46
  CLUS_2                 3                  66
  CLUS_3                 2                  51
D197V8, multiclass
        clus
vv       C20ORF132 MUTATED C20ORF132 WILD-TYPE
  CLUS_1                 1                  49
  CLUS_2                 6                  62
  CLUS_3                 1                  52
D197V9, multiclass
        clus
vv       C20ORF132 MUTATED C20ORF132 WILD-TYPE
  CLUS_1                 2                  57
  CLUS_2                 6                  74
  CLUS_3                 0                  29
D197V10, multiclass
        clus
vv       C20ORF132 MUTATED C20ORF132 WILD-TYPE
  CLUS_1                 0                  20
  CLUS_2                 5                  86
  CLUS_3                 3                  54
D197V11, multiclass
        clus
vv       C20ORF132 MUTATED C20ORF132 WILD-TYPE
  CLUS_1                 3                  43
  CLUS_2                 2                  33
  CLUS_3                 0                  24
D197V12, multiclass
        clus
vv       C20ORF132 MUTATED C20ORF132 WILD-TYPE
  CLUS_1                 0                  11
  CLUS_2                 2                  44
  CLUS_3                 3                  45

Clustering(198) Variable = EIF4G3 MUTATION ANALYSIS
D198V1, multiclass
[1] "Remove cluster labels:" "EIF4G3 MUTATED"        
clus
  EIF4G3 MUTATED EIF4G3 WILD-TYPE 
               2               30 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2656       TCGA-44-2657 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-44-2659       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3918       TCGA-44-3919 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-44-4112       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-55-1596       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-64-1680       TCGA-67-3770       TCGA-67-3771       TCGA-67-3772 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
D198V2, multiclass
[1] "Remove cluster labels:" "EIF4G3 MUTATED"        
clus
  EIF4G3 MUTATED EIF4G3 WILD-TYPE 
               2               30 
      TCGA-05-4244       TCGA-05-4249       TCGA-05-4250       TCGA-35-3615 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-35-4122       TCGA-35-4123       TCGA-44-2656       TCGA-44-2657 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-44-2659       TCGA-44-2661       TCGA-44-2662       TCGA-44-2665 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-44-2666       TCGA-44-2668       TCGA-44-3918       TCGA-44-3919 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-44-4112       TCGA-55-1592       TCGA-55-1594       TCGA-55-1595 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-55-1596       TCGA-64-1676       TCGA-64-1677       TCGA-64-1678 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-64-1680       TCGA-67-3770       TCGA-67-3771       TCGA-67-3772 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-67-3773       TCGA-67-3774 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
D198V3, multiclass
        clus
vv       EIF4G3 MUTATED EIF4G3 WILD-TYPE
  CLUS_1              0               70
  CLUS_2              5               63
  CLUS_3              1               33
D198V4, multiclass
[1] "Remove cluster labels:" "EIF4G3 MUTATED"        
clus
  EIF4G3 MUTATED EIF4G3 WILD-TYPE 
               2              108 
      TCGA-05-4384       TCGA-05-4390       TCGA-05-4405       TCGA-05-4410 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-05-4415       TCGA-05-4417       TCGA-05-4424       TCGA-05-4425 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-05-4427       TCGA-05-4433       TCGA-05-5420       TCGA-05-5423 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-05-5425       TCGA-05-5428       TCGA-05-5429       TCGA-05-5715 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-35-5375       TCGA-38-4631       TCGA-38-4632       TCGA-38-6178 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-44-2656       TCGA-44-2665       TCGA-44-2666       TCGA-44-2668 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-44-3918       TCGA-44-4112       TCGA-44-5643       TCGA-44-5645 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-44-6144       TCGA-44-6145       TCGA-44-6146       TCGA-44-6147 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-44-6148       TCGA-44-6774       TCGA-44-6775       TCGA-44-6776 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-44-6777       TCGA-44-6778       TCGA-44-6779       TCGA-49-4487 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-49-4488       TCGA-49-4490       TCGA-49-4512       TCGA-49-4514 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-49-6742       TCGA-49-6743       TCGA-49-6744       TCGA-49-6745 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-49-6767       TCGA-50-5044       TCGA-50-5045       TCGA-50-5049 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-50-5051       TCGA-50-5055       TCGA-50-5066       TCGA-50-5068 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-50-5072       TCGA-50-5930       TCGA-50-5931       TCGA-50-5932 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-50-5933       TCGA-50-5935       TCGA-50-5936       TCGA-50-5939 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-50-5941       TCGA-50-5942       TCGA-50-5944       TCGA-50-5946 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-50-6590       TCGA-50-6591       TCGA-50-6592       TCGA-50-6593 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-50-6594       TCGA-50-6595       TCGA-50-6597       TCGA-55-5899 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-55-6543       TCGA-55-6642       TCGA-55-6712       TCGA-64-5774 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-64-5775       TCGA-64-5778       TCGA-64-5779       TCGA-64-5781 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-64-5815       TCGA-67-4679       TCGA-67-6215       TCGA-67-6216 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-67-6217       TCGA-71-6725       TCGA-73-4658       TCGA-73-4676 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-75-5122       TCGA-75-5125       TCGA-75-5146       TCGA-75-5147 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-75-6203       TCGA-75-6205       TCGA-75-6207       TCGA-75-6211 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-75-6212       TCGA-80-5611       TCGA-86-6562       TCGA-91-6828 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
      TCGA-91-6829       TCGA-91-6831       TCGA-91-6835       TCGA-91-6836 
"EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" "EIF4G3 WILD-TYPE" 
D198V5, multiclass
        clus
vv       EIF4G3 MUTATED EIF4G3 WILD-TYPE
  CLUS_1              2               71
  CLUS_2              1               22
  CLUS_3              0               39
D198V6, multiclass
        clus
vv       EIF4G3 MUTATED EIF4G3 WILD-TYPE
  CLUS_1              1               76
  CLUS_2              1               25
  CLUS_3              1               31
D198V7, multiclass
        clus
vv       EIF4G3 MUTATED EIF4G3 WILD-TYPE
  CLUS_1              2               47
  CLUS_2              2               67
  CLUS_3              2               51
D198V8, multiclass
        clus
vv       EIF4G3 MUTATED EIF4G3 WILD-TYPE
  CLUS_1              0               50
  CLUS_2              5               63
  CLUS_3              1               52
D198V9, multiclass
        clus
vv       EIF4G3 MUTATED EIF4G3 WILD-TYPE
  CLUS_1              4               55
  CLUS_2              2               78
  CLUS_3              0               29
D198V10, multiclass
        clus
vv       EIF4G3 MUTATED EIF4G3 WILD-TYPE
  CLUS_1              1               19
  CLUS_2              2               89
  CLUS_3              3               54
D198V11, multiclass
        clus
vv       EIF4G3 MUTATED EIF4G3 WILD-TYPE
  CLUS_1              3               43
  CLUS_2              0               35
  CLUS_3              0               24
D198V12, multiclass
        clus
vv       EIF4G3 MUTATED EIF4G3 WILD-TYPE
  CLUS_1              0               11
  CLUS_2              0               46
  CLUS_3              3               45

Clustering(199) Variable = PLCB1 MUTATION ANALYSIS
D199V1, multiclass
        clus
vv       PLCB1 MUTATED PLCB1 WILD-TYPE
  CLUS_1             0               5
  CLUS_2             1               8
  CLUS_3             2              10
  CLUS_4             1               5
D199V2, multiclass
        clus
vv       PLCB1 MUTATED PLCB1 WILD-TYPE
  CLUS_1             1               6
  CLUS_2             3              10
  CLUS_3             0              12
D199V3, multiclass
        clus
vv       PLCB1 MUTATED PLCB1 WILD-TYPE
  CLUS_1             3              67
  CLUS_2             5              63
  CLUS_3             4              30
D199V4, multiclass
        clus
vv       PLCB1 MUTATED PLCB1 WILD-TYPE
  CLUS_1             1              33
  CLUS_2             7              26
  CLUS_3             1              42
D199V5, multiclass
        clus
vv       PLCB1 MUTATED PLCB1 WILD-TYPE
  CLUS_1             6              67
  CLUS_2             2              21
  CLUS_3             3              36
D199V6, multiclass
        clus
vv       PLCB1 MUTATED PLCB1 WILD-TYPE
  CLUS_1             6              71
  CLUS_2             2              24
  CLUS_3             3              29
D199V7, multiclass
        clus
vv       PLCB1 MUTATED PLCB1 WILD-TYPE
  CLUS_1             1              48
  CLUS_2             6              63
  CLUS_3             5              48
D199V8, multiclass
        clus
vv       PLCB1 MUTATED PLCB1 WILD-TYPE
  CLUS_1             5              45
  CLUS_2             2              66
  CLUS_3             5              48
D199V9, multiclass
        clus
vv       PLCB1 MUTATED PLCB1 WILD-TYPE
  CLUS_1             3              56
  CLUS_2             7              73
  CLUS_3             2              27
D199V10, multiclass
        clus
vv       PLCB1 MUTATED PLCB1 WILD-TYPE
  CLUS_1             3              17
  CLUS_2             7              84
  CLUS_3             2              55
D199V11, multiclass
        clus
vv       PLCB1 MUTATED PLCB1 WILD-TYPE
  CLUS_1             3              43
  CLUS_2             2              33
  CLUS_3             2              22
D199V12, multiclass
        clus
vv       PLCB1 MUTATED PLCB1 WILD-TYPE
  CLUS_1             2               9
  CLUS_2             3              43
  CLUS_3             2              46

Clustering(200) Variable = KRTAP19-6 MUTATION ANALYSIS
D200V1, multiclass
[1] "Remove cluster labels:" "KRTAP19-6 MUTATED"     
clus
  KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE 
                  2                  30 
         TCGA-05-4244          TCGA-05-4249          TCGA-05-4250 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-35-3615          TCGA-35-4122          TCGA-35-4123 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-2661          TCGA-44-2662          TCGA-44-2665 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-2666          TCGA-44-2668          TCGA-44-3398 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-3918          TCGA-44-3919          TCGA-44-4112 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-55-1596          TCGA-64-1677          TCGA-64-1678 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-64-1680          TCGA-67-3770          TCGA-67-3771 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-67-3772          TCGA-67-3773          TCGA-67-3774 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
D200V2, multiclass
[1] "Remove cluster labels:" "KRTAP19-6 MUTATED"     
clus
  KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE 
                  2                  30 
         TCGA-05-4244          TCGA-05-4249          TCGA-05-4250 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-35-3615          TCGA-35-4122          TCGA-35-4123 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-2655          TCGA-44-2656          TCGA-44-2657 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-2661          TCGA-44-2662          TCGA-44-2665 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-2666          TCGA-44-2668          TCGA-44-3398 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-3918          TCGA-44-3919          TCGA-44-4112 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-55-1592          TCGA-55-1594          TCGA-55-1595 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-55-1596          TCGA-64-1677          TCGA-64-1678 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-64-1680          TCGA-67-3770          TCGA-67-3771 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-67-3772          TCGA-67-3773          TCGA-67-3774 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
D200V3, multiclass
        clus
vv       KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE
  CLUS_1                 4                  66
  CLUS_2                 0                  68
  CLUS_3                 0                  34
D200V4, multiclass
[1] "Remove cluster labels:" "KRTAP19-6 MUTATED"     
clus
  KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE 
                  2                 108 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4424          TCGA-05-4425          TCGA-05-4427 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4433          TCGA-05-5420          TCGA-05-5423 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-5425          TCGA-05-5428          TCGA-05-5429 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-5715          TCGA-35-5375          TCGA-38-4631 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-38-4632          TCGA-38-6178          TCGA-44-2656 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-2665          TCGA-44-2666          TCGA-44-2668 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-3918          TCGA-44-4112          TCGA-44-5643 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4487          TCGA-49-4488          TCGA-49-4490 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4512          TCGA-49-4514          TCGA-49-6742 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-6743          TCGA-49-6744          TCGA-49-6745 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-6767          TCGA-50-5044          TCGA-50-5045 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-55-5899          TCGA-55-6543          TCGA-55-6642 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-55-6712          TCGA-64-5774          TCGA-64-5775 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-67-4679          TCGA-67-6215          TCGA-67-6216 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-67-6217          TCGA-71-6725          TCGA-73-4658 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-73-4676          TCGA-75-5122          TCGA-75-5125 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-75-5126          TCGA-75-5146          TCGA-75-5147 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-75-6203          TCGA-75-6205          TCGA-75-6207 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-75-6211          TCGA-75-6212          TCGA-80-5611 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-86-6562          TCGA-91-6828          TCGA-91-6829 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-91-6831          TCGA-91-6835          TCGA-91-6836 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
D200V5, multiclass
        clus
vv       KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE
  CLUS_1                 3                  70
  CLUS_2                 0                  23
  CLUS_3                 0                  39
D200V6, multiclass
        clus
vv       KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE
  CLUS_1                 3                  74
  CLUS_2                 0                  26
  CLUS_3                 0                  32
D200V7, multiclass
        clus
vv       KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE
  CLUS_1                 1                  48
  CLUS_2                 3                  66
  CLUS_3                 0                  53
D200V8, multiclass
        clus
vv       KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE
  CLUS_1                 1                  49
  CLUS_2                 3                  65
  CLUS_3                 0                  53
D200V9, multiclass
        clus
vv       KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE
  CLUS_1                 2                  57
  CLUS_2                 1                  79
  CLUS_3                 1                  28
D200V10, multiclass
        clus
vv       KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE
  CLUS_1                 0                  20
  CLUS_2                 2                  89
  CLUS_3                 2                  55
D200V11, multiclass
[1] "Remove cluster labels:" "KRTAP19-6 MUTATED"     
clus
  KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE 
                  2                 103 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4424          TCGA-05-4425          TCGA-05-4427 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4433          TCGA-05-5420          TCGA-05-5423 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-5425          TCGA-05-5428          TCGA-05-5429 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-5715          TCGA-35-5375          TCGA-38-4631 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-38-4632          TCGA-38-6178          TCGA-44-5643 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4487          TCGA-49-4488          TCGA-49-4490 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4512          TCGA-49-4514          TCGA-49-6742 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-6743          TCGA-49-6744          TCGA-49-6745 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-6767          TCGA-50-5044          TCGA-50-5045 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-55-5899          TCGA-55-6543          TCGA-55-6642 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-55-6712          TCGA-64-5774          TCGA-64-5775 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-67-4679          TCGA-67-6215          TCGA-67-6216 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-67-6217          TCGA-71-6725          TCGA-73-4658 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-73-4676          TCGA-75-5122          TCGA-75-5125 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-75-5126          TCGA-75-5146          TCGA-75-5147 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-75-6203          TCGA-75-6205          TCGA-75-6206 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-75-6207          TCGA-75-6211          TCGA-75-6212 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-80-5611          TCGA-86-6562          TCGA-91-6828 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-91-6829          TCGA-91-6831          TCGA-91-6835 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-91-6836 
"KRTAP19-6 WILD-TYPE" 
D200V12, multiclass
[1] "Remove cluster labels:" "KRTAP19-6 MUTATED"     
clus
  KRTAP19-6 MUTATED KRTAP19-6 WILD-TYPE 
                  2                 103 
         TCGA-05-4384          TCGA-05-4390          TCGA-05-4396 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4405          TCGA-05-4415          TCGA-05-4417 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4424          TCGA-05-4425          TCGA-05-4427 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-4433          TCGA-05-5420          TCGA-05-5423 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-5425          TCGA-05-5428          TCGA-05-5429 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-05-5715          TCGA-35-5375          TCGA-38-4631 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-38-4632          TCGA-38-6178          TCGA-44-5643 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-5645          TCGA-44-6144          TCGA-44-6145 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-6146          TCGA-44-6147          TCGA-44-6148 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-6774          TCGA-44-6775          TCGA-44-6776 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-44-6777          TCGA-44-6778          TCGA-44-6779 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4487          TCGA-49-4488          TCGA-49-4490 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-4512          TCGA-49-4514          TCGA-49-6742 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-6743          TCGA-49-6744          TCGA-49-6745 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-49-6767          TCGA-50-5044          TCGA-50-5045 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5049          TCGA-50-5051          TCGA-50-5055 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5066          TCGA-50-5068          TCGA-50-5072 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5930          TCGA-50-5931          TCGA-50-5932 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5933          TCGA-50-5935          TCGA-50-5936 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5939          TCGA-50-5941          TCGA-50-5942 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-5944          TCGA-50-5946          TCGA-50-6590 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-6591          TCGA-50-6592          TCGA-50-6593 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-50-6594          TCGA-50-6595          TCGA-50-6597 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-55-5899          TCGA-55-6543          TCGA-55-6642 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-55-6712          TCGA-64-5774          TCGA-64-5775 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-64-5779          TCGA-64-5781          TCGA-64-5815 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-67-4679          TCGA-67-6215          TCGA-67-6216 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-67-6217          TCGA-71-6725          TCGA-73-4658 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-73-4676          TCGA-75-5122          TCGA-75-5125 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-75-5126          TCGA-75-5146          TCGA-75-5147 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-75-6203          TCGA-75-6205          TCGA-75-6206 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-75-6207          TCGA-75-6211          TCGA-75-6212 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-80-5611          TCGA-86-6562          TCGA-91-6828 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-91-6829          TCGA-91-6831          TCGA-91-6835 
"KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" "KRTAP19-6 WILD-TYPE" 
         TCGA-91-6836 
"KRTAP19-6 WILD-TYPE" 
                           V1                            V2 
                  "MRNA_CNMF"          "MRNA_CHIERARCHICAL" 
                           V3                            V4 
                    "CN_CNMF"            "METHLYATION_CNMF" 
                           V5                            V6 
                  "RPPA_CNMF"          "RPPA_CHIERARCHICAL" 
                           V7                            V8 
               "MRNASEQ_CNMF"       "MRNASEQ_CHIERARCHICAL" 
                           V9                           V10 
                "MIRSEQ_CNMF"        "MIRSEQ_CHIERARCHICAL" 
                          V11                           V12 
         "MIRSEQ_MATURE_CNMF" "MIRSEQ_MATURE_CHIERARCHICAL" 
> q(save="no")
